Citrus Sinensis ID: 000517
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1449 | 2.2.26 [Sep-21-2011] | |||||||
| Q5W274 | 1447 | Pleiotropic drug resistan | N/A | no | 0.997 | 0.998 | 0.714 | 0.0 | |
| Q9LFH0 | 1450 | ABC transporter G family | yes | no | 0.997 | 0.996 | 0.674 | 0.0 | |
| Q9ZUT8 | 1413 | ABC transporter G family | no | no | 0.960 | 0.985 | 0.679 | 0.0 | |
| Q7PC81 | 1390 | ABC transporter G family | no | no | 0.937 | 0.976 | 0.596 | 0.0 | |
| Q8GZ52 | 1400 | ABC transporter G family | no | no | 0.948 | 0.982 | 0.589 | 0.0 | |
| Q7PC83 | 1397 | ABC transporter G family | no | no | 0.941 | 0.976 | 0.595 | 0.0 | |
| Q7PC82 | 1392 | ABC transporter G family | no | no | 0.950 | 0.989 | 0.588 | 0.0 | |
| Q7PC86 | 1442 | ABC transporter G family | no | no | 0.975 | 0.979 | 0.537 | 0.0 | |
| Q9XIE2 | 1469 | ABC transporter G family | no | no | 0.969 | 0.956 | 0.534 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | yes | no | 0.977 | 0.976 | 0.517 | 0.0 |
| >sp|Q5W274|PDR3_TOBAC Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2215 bits (5740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1037/1451 (71%), Positives = 1245/1451 (85%), Gaps = 6/1451 (0%)
Query: 1 MAQMIGTDEIESVRIELAEIGRSLRSSFRLPTSSYRSSSAISSRKED--TDVEHALLWAE 58
MAQ++G+DEIES R++LAEIGRSLRSSFR +SS+RS+SA+S+ ++D D E+ L WA
Sbjct: 1 MAQLVGSDEIESFRMDLAEIGRSLRSSFRGQSSSFRSNSALSASQKDDAVDEENMLAWAA 60
Query: 59 IERLPTYDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFIEKLIKHIEHDNLQL 118
IERLPT+DRL++SLF+ +GN + + K V DVTKLGALERHVFIEK+IKHIEHDNLQL
Sbjct: 61 IERLPTFDRLRSSLFE-EINGNDANVKRKRVTDVTKLGALERHVFIEKMIKHIEHDNLQL 119
Query: 119 LWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYK 178
L KIRKR+DKVG++LPT+EVRYKNL +EA+CE+VHGKPLPTLWNS K + L +L G +
Sbjct: 120 LHKIRKRIDKVGVELPTVEVRYKNLTIEAECELVHGKPLPTLWNSLKSITMNLARLPGLQ 179
Query: 179 SLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKL 238
S AKI ILN VSG++KPGRMTLLLGPPGCGK++ LKALSGNLD SLKV+GE+SYNGYKL
Sbjct: 180 SELAKIKILNDVSGVIKPGRMTLLLGPPGCGKTSLLKALSGNLDKSLKVSGEISYNGYKL 239
Query: 239 EEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDP 298
EEFVP KTSAY+SQNDLHI EMTVRET+D+S+R QGVGSR E M ++SRREKEAG+VPDP
Sbjct: 240 EEFVPQKTSAYVSQNDLHIPEMTVRETLDYSSRFQGVGSRAEIMTDLSRREKEAGVVPDP 299
Query: 299 DIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIV 358
DIDTYMKAIS++G K+ LQTDYILKILGLD+CADT+VG+AMRRGISGGQKKRLTTGE+IV
Sbjct: 300 DIDTYMKAISIEGQKKNLQTDYILKILGLDICADTLVGDAMRRGISGGQKKRLTTGELIV 359
Query: 359 GPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418
GP KALFMDEI+NGLDSST YQI+AC+QQL HITD+T L+SLLQPAPETFDLFDDIILMA
Sbjct: 360 GPIKALFMDEISNGLDSSTTYQIVACLQQLAHITDATILVSLLQPAPETFDLFDDIILMA 419
Query: 419 EGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVD 478
EGKI+YHGP++ L FFE CGF+CPERKGV+DFLQEV S+KDQAQ+W T+ Y + SVD
Sbjct: 420 EGKILYHGPRNSALEFFESCGFKCPERKGVADFLQEVTSKKDQAQYWHGTKETYKFVSVD 479
Query: 479 MFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRN 538
M S+KFKESP KKL+EEL VPYD S+S +N+I+F YSL +WELF+ACMSRE LLM+RN
Sbjct: 480 MLSRKFKESPYRKKLNEELSVPYDNSRSHRNSITFRDYSLPKWELFRACMSREFLLMKRN 539
Query: 539 SFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELSMTI 598
SF+Y+FKT QL ++A++ MTVFLRTRM+ D+ H NYY+G+L+++L++LLVDG PELSMTI
Sbjct: 540 SFIYIFKTVQLAIIASITMTVFLRTRMDTDLVHANYYLGALFYALIILLVDGFPELSMTI 599
Query: 599 QRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQF 658
RL VFYKQ ELCFYPAWAY IPATILK+PLSL+ S+ W +TYYVIG+SPE RFFRQ
Sbjct: 600 TRLAVFYKQSELCFYPAWAYTIPATILKIPLSLLESVIWASMTYYVIGFSPEAGRFFRQL 659
Query: 659 ILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFW 718
+LLFA H TSISMFRF+ASV +T A+ AG + ILFV F GF+I RPSMP WLKWGFW
Sbjct: 660 LLLFAVHMTSISMFRFLASVCRTIVASTAAGGLSILFVLCFSGFIIPRPSMPIWLKWGFW 719
Query: 719 ISPVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIAL 778
ISP+TYGEIGL+VNEFLAPRWQK LPTNT+IG E+LESRGLNFDG+ +WIS+ ALFG +
Sbjct: 720 ISPLTYGEIGLAVNEFLAPRWQKTLPTNTSIGNEVLESRGLNFDGYFYWISVCALFGFTI 779
Query: 779 LLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKESYKG 838
L NIGFTLALTFLK+ G SR +IS +K ++++ S DS ENS++T +++ + G
Sbjct: 780 LFNIGFTLALTFLKAPG-SRAIISTDKYSQIEGSSDSIDKADAAENSKATMDSHERA--G 836
Query: 839 RMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGA 898
RMVLPFEPL++ FQD++YYVDTP M E GF ++L+LL D+TG+LRPG+LTALMGVSGA
Sbjct: 837 RMVLPFEPLSLVFQDVQYYVDTPAAMTELGFTQKRLQLLSDITGALRPGILTALMGVSGA 896
Query: 899 GKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFS 958
GKTTL+DVLAGRKT+GYVEGEIK+ GYPKVQETFARVSGYCEQTDIHSP ITVEESVIFS
Sbjct: 897 GKTTLLDVLAGRKTTGYVEGEIKVGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFS 956
Query: 959 AWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVAN 1018
AWLRL P+I+SKTK EFV EV+ETIELD IK LVG+PGV+GLSTEQRKRLTIAVELVAN
Sbjct: 957 AWLRLHPQIDSKTKYEFVKEVIETIELDGIKGMLVGMPGVSGLSTEQRKRLTIAVELVAN 1016
Query: 1019 PSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGG 1078
PSIIFMDEPTTGLDAR+AAIVMRAVKN+ +TGRTIVCTIHQPSIDIFEAFDELILLKTGG
Sbjct: 1017 PSIIFMDEPTTGLDARSAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELILLKTGG 1076
Query: 1079 RIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQIFRE 1138
R+IY G LG++S ++IEYFEGIS VPKI+NN+NPATW++EVTSTS+EA++ +DFA++++
Sbjct: 1077 RMIYWGHLGRNSCKMIEYFEGISCVPKIKNNHNPATWMLEVTSTSSEADISIDFAEVYKN 1136
Query: 1139 SVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRI 1198
S L++NN ELVK+L+ PP GSKDLHFPTRFS+N WGQFK+C WK + SYWRSPSYNLMR
Sbjct: 1137 SALHKNNEELVKKLSFPPAGSKDLHFPTRFSQNGWGQFKTCFWKQYWSYWRSPSYNLMRS 1196
Query: 1199 MHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARERTVM 1258
+H ASL+ G+LFWD G+KLDNQQ +F++ G+ + AV+F GINN SSV+P V ER+V+
Sbjct: 1197 LHMLFASLVSGLLFWDKGKKLDNQQSVFSVFGAMFTAVIFCGINNSSSVLPYVTTERSVL 1256
Query: 1259 YREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFCT 1318
YRE FAGMY+ WAYALAQV +EIPYLL QAL++ +I YPMIGYYWSAYK+FW FY MFCT
Sbjct: 1257 YRERFAGMYASWAYALAQVAIEIPYLLAQALAFTVITYPMIGYYWSAYKVFWYFYSMFCT 1316
Query: 1319 MMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSW 1378
++++ YLGM+LVS+TP+ +A+IL S YT+FNLFAGFL+P +IPKWWIW YY+ PTSW
Sbjct: 1317 LLYFTYLGMMLVSMTPSFPVAAILQSSFYTMFNLFAGFLMPKAQIPKWWIWFYYLTPTSW 1376
Query: 1379 ALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAFLFA 1438
LN M+TSQYGDI+KE+ VF E K +++F+ DYFGFHH++LPI A VLI YPLV A LFA
Sbjct: 1377 TLNGMLTSQYGDIEKEITVFQEKKTVAAFLGDYFGFHHNQLPIVAFVLIAYPLVFASLFA 1436
Query: 1439 FCIERLNFLRR 1449
F I +LNF RR
Sbjct: 1437 FFIGKLNFQRR 1447
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9LFH0|AB37G_ARATH ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2102 bits (5445), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 981/1454 (67%), Positives = 1217/1454 (83%), Gaps = 9/1454 (0%)
Query: 1 MAQMIGTDEIESVRIELAEIGRSLRSSFRLPTSSYRSSSAISSRKEDTDV-----EHALL 55
MA M+G D+IES+R+ELAEIGRS+RSSFR TSS+RSSS+I + D DV E+AL
Sbjct: 1 MAHMVGADDIESLRVELAEIGRSIRSSFRRHTSSFRSSSSIYEVENDGDVNDHDAEYALQ 60
Query: 56 WAEIERLPTYDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFIEKLIKHIEHDN 115
WAEIERLPT R++++L D + +G+ V+DVTKLGA+ERH+ IEKLIKHIE+DN
Sbjct: 61 WAEIERLPTVKRMRSTLLDDGDES--MTEKGRRVVDVTKLGAVERHLMIEKLIKHIENDN 118
Query: 116 LQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLS 175
L+LL KIR+R+D+VG++LPTIEVRY++L V A+CEVV GK LPTLWN+ K ++S L KL+
Sbjct: 119 LKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTLWNTAKRVLSELVKLT 178
Query: 176 GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG 235
G K+ EAKINI+N V+GI+KPGR+TLLLGPP CGK+T LKALSGNL+ +LK +GE+SYNG
Sbjct: 179 GAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLKCSGEISYNG 238
Query: 236 YKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIV 295
++L+EFVP KTSAYISQ DLHIAEMTVRETVDFSARCQGVGSR + MMEVS+REKE GI+
Sbjct: 239 HRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSKREKEKGII 298
Query: 296 PDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGE 355
PD ++D YMKAISV+G++R+LQTDYILKILGLD+CA+ ++G+ MRRGISGGQKKRLTT E
Sbjct: 299 PDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQKKRLTTAE 358
Query: 356 MIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415
MIVGPTKALFMDEITNGLDSSTA+QI+ +QQ HI+ +T L+SLLQPAPE++DLFDDI+
Sbjct: 359 MIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPESYDLFDDIM 418
Query: 416 LMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYF 475
LMA+G+IVYHGP+ VL FFEDCGFRCPERKGV+DFLQEV+S+KDQAQ+W H +LPYS+
Sbjct: 419 LMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWWHEDLPYSFV 478
Query: 476 SVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLM 535
SV+M SKKFK+ + KK+++ L PYD+SKS K+A+SFSVYSL WELF AC+SRE LLM
Sbjct: 479 SVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIACISREYLLM 538
Query: 536 RRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELS 595
+RN FVY+FKT QL+M A + MTVF+RTRM ID+ HGN YM +L+F+L++LLVDG PELS
Sbjct: 539 KRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIHGNSYMSALFFALIILLVDGFPELS 598
Query: 596 MTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFF 655
MT QRL VFYKQ++LCFYPAWAYAIPAT+LKVPLS SL WTCL+YYVIGY+PE RFF
Sbjct: 599 MTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFF 658
Query: 656 RQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKW 715
+QFILLFA HFTSISMFR +A++FQT A++TAGS ILF F+F GFVI PSMPAWLKW
Sbjct: 659 KQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKW 718
Query: 716 GFWISPVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFG 775
GFW +P++YGEIGLSVNEFLAPRW +M P N T+G+ IL++RG++++G+++W+SL AL G
Sbjct: 719 GFWANPLSYGEIGLSVNEFLAPRWNQMQPNNFTLGRTILQTRGMDYNGYMYWVSLCALLG 778
Query: 776 IALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKES 835
+L NI FTLALTFLKS SSR MIS +KL+++Q +E S+ V++ + +P+ +E
Sbjct: 779 FTVLFNIIFTLALTFLKSPTSSRAMISQDKLSELQGTEKSTEDSSVRKKTTDSPVKTEE- 837
Query: 836 YKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGV 895
+ +MVLPF+PLTV FQDL Y+VD P+EMR++G+ +KL+LL D+TG+ RPG+LTALMGV
Sbjct: 838 -EDKMVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGV 896
Query: 896 SGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESV 955
SGAGKTTL+DVLAGRKTSGY+EG+I+ISG+PKVQETFARVSGYCEQTDIHSPNITVEESV
Sbjct: 897 SGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESV 956
Query: 956 IFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVEL 1015
I+SAWLRLAPEI++ TK +FV +VLETIELD IKDSLVG+ GV+GLSTEQRKRLTIAVEL
Sbjct: 957 IYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVEL 1016
Query: 1016 VANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075
VANPSIIFMDEPTTGLDARAAAIVMRAVKN+ +TGRTIVCTIHQPSIDIFEAFDEL+LLK
Sbjct: 1017 VANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLK 1076
Query: 1076 TGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQI 1135
GGR+IY GPLG+HS +IEYFE + +PKI++N+NPATW+++V+S S E EL VDFA+I
Sbjct: 1077 RGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKI 1136
Query: 1136 FRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNL 1195
+ +S LY+ N ELVKQL+ P GS D+ F F++++WGQFKS LWK++LSYWRSPSYNL
Sbjct: 1137 YHDSALYKRNSELVKQLSQPDSGSSDIQFKRTFAQSWWGQFKSILWKMNLSYWRSPSYNL 1196
Query: 1196 MRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARER 1255
MR+MHT +SL+FG LFW GQ LD QQ +F + G+ Y V+FLGINNC+S + ER
Sbjct: 1197 MRMMHTLVSSLIFGALFWKQGQNLDTQQSMFTVFGAIYGLVLFLGINNCASALQYFETER 1256
Query: 1256 TVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGM 1315
VMYRE FAGMYS AYAL QV EIPY+ IQA +VI+ YPMIG+Y SAYK+FW+ Y M
Sbjct: 1257 NVMYRERFAGMYSATAYALGQVVTEIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSM 1316
Query: 1316 FCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMP 1375
FC+++ +NYL M LVS+TPN M+A+IL S+ Y FNLF+GFLIP ++P WWIW+YY+ P
Sbjct: 1317 FCSLLTFNYLAMFLVSITPNFMVAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTP 1376
Query: 1376 TSWALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAF 1435
TSW LN ++SQYGDI +E+ VFG++ ++ F++DYFGFHHD L +TA V I +P+ LA
Sbjct: 1377 TSWTLNGFISSQYGDIHEEINVFGQSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALAS 1436
Query: 1436 LFAFCIERLNFLRR 1449
+FAF + +LNF RR
Sbjct: 1437 MFAFFVGKLNFQRR 1450
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUT8|AB33G_ARATH ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2049 bits (5309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 953/1403 (67%), Positives = 1175/1403 (83%), Gaps = 11/1403 (0%)
Query: 49 DVEHALLWAEIERLPTYDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFIEKLI 108
+ EHAL WAEI+RLPT+ RL++SL D G +GK V+DVTKLGA+ERH+ IEKLI
Sbjct: 20 EAEHALQWAEIQRLPTFKRLRSSLVDKYGEGT---EKGKKVVDVTKLGAMERHLMIEKLI 76
Query: 109 KHIEHDNLQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMI 168
KHIE+DNL+LL KIR+R+++VG++ P+IEVRY++L VEA CEVV GK LPTLWNS K +
Sbjct: 77 KHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTLWNSLKHVF 136
Query: 169 SVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVT 228
L KLSG ++ EA I IL VSGI+ PGR+TLLLGPPGCGK+T LKALSGNL+ +LK
Sbjct: 137 LDLLKLSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLENNLKCY 196
Query: 229 GEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRR 288
GE+SYNG+ L E VP KTSAYISQ+DLHIAEMT RET+DFSARCQGVGSR + MMEVS+R
Sbjct: 197 GEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSRTDIMMEVSKR 256
Query: 289 EKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQK 348
EK+ GI+PDP+ID YMKAISVKG+KR+LQTDYILKILGLD+CA+T+VGNAM+RGISGGQK
Sbjct: 257 EKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRGISGGQK 316
Query: 349 KRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETF 408
KRLTT EMIVGPTKALFMDEITNGLDSSTA+QII +QQ+ HIT++T +SLLQPAPE++
Sbjct: 317 KRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQPAPESY 376
Query: 409 DLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHT 468
DLFDDI+LMAEGKIVYHGP+D VL FFE+CGF+CPERKGV+DFLQEV+S+KDQ Q+WLH
Sbjct: 377 DLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKKDQGQYWLHQ 436
Query: 469 ELPYSYFSVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACM 528
LP+S+ SVD SK+FK+ + +K++E L PYD SK+ K+A+SF+VYSL +WELF+AC+
Sbjct: 437 NLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLPKWELFRACI 496
Query: 529 SRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLV 588
SRE LLM+RN FVY+FKT QL++ A + MTVF+RTRM+ID+ HGN YM L+F+ VVLLV
Sbjct: 497 SREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDIDIIHGNSYMSCLFFATVVLLV 556
Query: 589 DGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYS 648
DG+PELSMT+QRL VFYKQ++LCFYPAWAYAIPAT+LK+PLS SL WTCLTYYVIGY+
Sbjct: 557 DGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTYYVIGYT 616
Query: 649 PEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPS 708
PE +RFFRQF++LFA HFTSISMFR +A++FQT AAMTAGS V+L F+F GF I
Sbjct: 617 PEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFVFAGFAIPYTD 676
Query: 709 MPAWLKWGFWISPVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWI 768
MP WLKWGFW++P++Y EIGLSVNEFLAPRWQKM PTN T+G+ ILESRGLN+D +++W+
Sbjct: 677 MPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQPTNVTLGRTILESRGLNYDDYMYWV 736
Query: 769 SLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENS--R 826
SL AL G+ ++ N FTLAL+FLKS SSR MIS +KL+++Q ++DSS VK+N
Sbjct: 737 SLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQGTKDSS----VKKNKPLD 792
Query: 827 STPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRP 886
S+ TN++ G+M+LPF+PLT+ FQDL YYVD P+EM+ +G+ ++KL+LL ++TG+ RP
Sbjct: 793 SSIKTNEDP--GKMILPFKPLTITFQDLNYYVDVPVEMKGQGYNEKKLQLLSEITGAFRP 850
Query: 887 GVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHS 946
GVLTALMG+SGAGKTTL+DVLAGRKTSGY+EGEI+ISG+ KVQETFARVSGYCEQTDIHS
Sbjct: 851 GVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETFARVSGYCEQTDIHS 910
Query: 947 PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQR 1006
P+ITVEES+I+SAWLRL PEIN +TK FV +VLETIEL+ IKD+LVG+ GV+GLSTEQR
Sbjct: 911 PSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIKDALVGVAGVSGLSTEQR 970
Query: 1007 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFE 1066
KRLT+AVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN+ TGRTIVCTIHQPSI IFE
Sbjct: 971 KRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTIVCTIHQPSIHIFE 1030
Query: 1067 AFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEA 1126
AFDEL+LLK GGR+IY GPLG+HSS VIEYF+ I GV KIR+ YNPATW++EVTS S E
Sbjct: 1031 AFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNPATWMLEVTSESVET 1090
Query: 1127 ELCVDFAQIFRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLS 1186
EL +DFA+I+ ES LY+NN ELVK+L+ P GS DLHF F++N+W QFKSCLWK+ LS
Sbjct: 1091 ELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFAQNWWEQFKSCLWKMSLS 1150
Query: 1187 YWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSS 1246
YWRSPSYNLMRI HT +S +FG+LFW+ G+K+D QQ+LF ++G+ Y V+F+GINNC+S
Sbjct: 1151 YWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDTQQNLFTVLGAIYGLVLFVGINNCTS 1210
Query: 1247 VIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAY 1306
+ ER VMYRE FAGMYS +AYALAQV EIPY+ IQ+ +VI+ YPMIG+Y S
Sbjct: 1211 ALQYFETERNVMYRERFAGMYSAFAYALAQVVTEIPYIFIQSAEFVIVIYPMIGFYASFS 1270
Query: 1307 KLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKW 1366
K+FW+ Y MFC ++ +NYL M L+S+TPN M+A+IL S+ +T FN+FAGFLIP P+IPKW
Sbjct: 1271 KVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTTFNIFAGFLIPKPQIPKW 1330
Query: 1367 WIWMYYMMPTSWALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVL 1426
W+W YY+ PTSW LN +SQYGDI +++ FGETK ++SF++DYFGFHHDRL ITA +L
Sbjct: 1331 WVWFYYITPTSWTLNLFFSSQYGDIHQKINAFGETKTVASFLEDYFGFHHDRLMITAIIL 1390
Query: 1427 IIYPLVLAFLFAFCIERLNFLRR 1449
I +P+ LA ++AF + +LNF +R
Sbjct: 1391 IAFPIALATMYAFFVAKLNFQKR 1413
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC81|AB43G_ARATH ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1768 bits (4579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 834/1398 (59%), Positives = 1067/1398 (76%), Gaps = 40/1398 (2%)
Query: 56 WAEIERLPTYDRLKASLFDVNSHGNLVDNQGKL----VIDVTKLGALERHVFIEKLIKHI 111
W IER PT R+ +LF D QGK V+DV+KL L+R +FI++LI+H+
Sbjct: 29 WVAIERSPTCKRITTALFCKR------DEQGKRSQRRVMDVSKLEDLDRRLFIDELIRHV 82
Query: 112 EHDNLQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVL 171
E DN LL KIR R D+VGI LP IEVR+ +L VEA+CEVVHGKP+PTLWN+ +S
Sbjct: 83 EDDNRVLLQKIRTRTDEVGIDLPKIEVRFSDLFVEAECEVVHGKPIPTLWNAIASKLSRF 142
Query: 172 PKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEV 231
+ E KI+IL VSGI++P RMTLLLGPPGCGK+T L ALSG LDPSLK GEV
Sbjct: 143 T----FSKQEDKISILKGVSGIIRPKRMTLLLGPPGCGKTTLLLALSGRLDPSLKTRGEV 198
Query: 232 SYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKE 291
SYNG+ EFVP KTS+Y+SQNDLHI E++VRET+DFS QG GSR E M E+SRREK
Sbjct: 199 SYNGHLFSEFVPEKTSSYVSQNDLHIPELSVRETLDFSGCFQGAGSRLEMMKEISRREKL 258
Query: 292 AGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRL 351
GIVPDPDID YMKA S++G K LQTDYILKILGL +CADT VG+A R GISGGQK+RL
Sbjct: 259 KGIVPDPDIDAYMKAASIEGSKTNLQTDYILKILGLTICADTRVGDASRPGISGGQKRRL 318
Query: 352 TTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLF 411
TTGEMIVGP K LFMDEI+NGLDSST +QI++C+QQ +++ T L+SLLQPAPETF+LF
Sbjct: 319 TTGEMIVGPIKTLFMDEISNGLDSSTTFQILSCLQQFARLSEGTILVSLLQPAPETFELF 378
Query: 412 DDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELP 471
DD+ILM EGKI+YHGP+D + +FFEDCGF+CP+RK V++FLQEV+SRKDQ Q+W H + P
Sbjct: 379 DDLILMGEGKIIYHGPRDFICSFFEDCGFKCPQRKSVAEFLQEVISRKDQEQYWCHRDKP 438
Query: 472 YSYFSVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRE 531
Y Y S+D F +KFK+S L +L +EL YDKS++ K+ + YSLS W++FKAC RE
Sbjct: 439 YCYVSIDSFIEKFKKSDLGLQLQDELSKTYDKSQTQKDGLCIRKYSLSNWDMFKACSRRE 498
Query: 532 LLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGM 591
LLM+RNSFVYVFK+ LI + ++AMTV+LRT D H NY MGSL+FSL+ LL DG+
Sbjct: 499 FLLMKRNSFVYVFKSGLLIFIGSIAMTVYLRTGSTRDSLHANYLMGSLFFSLIKLLADGL 558
Query: 592 PELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEV 651
PEL++T+ R+ VF KQ+EL FYPAWAYAIP+ ILK+P+S + S WT LTYYVIGYSPE
Sbjct: 559 PELTLTVSRIAVFCKQKELYFYPAWAYAIPSAILKIPISFLESFLWTMLTYYVIGYSPEA 618
Query: 652 WRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPA 711
RF RQ ++LFA H + ISMFR + +VF+ A T GS+ I+ + +FGGF++ +PSMP+
Sbjct: 619 GRFIRQVLILFALHLSCISMFRAIGAVFRDFDVATTIGSISIVLLSVFGGFIVRKPSMPS 678
Query: 712 WLKWGFWISPVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLG 771
WL+WGFW+SP++Y EIGL+ NEF AP W+KM N T+G+++L++RGLNF +W + G
Sbjct: 679 WLEWGFWLSPLSYAEIGLTSNEFFAPMWRKMTSENRTLGEQVLDARGLNFGNQSYWNAFG 738
Query: 772 ALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMT 831
AL G L N F LALTFLK+S SRV++SH+K N++S+
Sbjct: 739 ALIGFTLFFNTVFALALTFLKTSQRSRVIVSHDK------------------NTQSSEKD 780
Query: 832 NKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTA 891
+K + + LPFEPLT FQD++Y+++TP +KL+LL DVTG+ +PGVLTA
Sbjct: 781 SKIASHSKNALPFEPLTFTFQDVQYFIETP--------QGKKLQLLSDVTGAFKPGVLTA 832
Query: 892 LMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITV 951
LMGVSGAGKTTL+DVL+GRKT G ++G+I++ GY KVQ+TF+RVSGYCEQ DIHSPN+TV
Sbjct: 833 LMGVSGAGKTTLLDVLSGRKTRGDIKGQIEVGGYVKVQDTFSRVSGYCEQFDIHSPNLTV 892
Query: 952 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTI 1011
+ES+ +SAWLRL I+S+TK+ VNEVLETIEL+ IKDSLVG+PG++G++ EQRKRLTI
Sbjct: 893 QESLKYSAWLRLPCNISSETKSAIVNEVLETIELEEIKDSLVGVPGISGVTAEQRKRLTI 952
Query: 1012 AVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDEL 1071
AVELV+NPSIIFMDEPTTGLDARAAAIVMRAVKNI TGRT+VCTIHQPSIDIFEAFDEL
Sbjct: 953 AVELVSNPSIIFMDEPTTGLDARAAAIVMRAVKNIAETGRTVVCTIHQPSIDIFEAFDEL 1012
Query: 1072 ILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVD 1131
IL+K GG+IIY GPLG+HSS+VIEYF I GVPK++ N NPATW++++TS S+E +L VD
Sbjct: 1013 ILMKNGGKIIYYGPLGQHSSKVIEYFMSIPGVPKLKENSNPATWILDITSKSSEDKLGVD 1072
Query: 1132 FAQIFRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSP 1191
A I+ ES L++ N+ +++Q GS+ L +R+++ W QFK+CLWK HLSYWR+P
Sbjct: 1073 LAHIYEESTLFKENKMVIEQTRCTSLGSERLILSSRYAQTSWEQFKACLWKQHLSYWRNP 1132
Query: 1192 SYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNV 1251
SYNL RI+ +L G+LF ++++NQQDLFN+ GS + V+F GINNCS+VI V
Sbjct: 1133 SYNLTRIIFMCFTCMLCGILFLQKAKEINNQQDLFNVFGSMFTVVLFSGINNCSTVIFCV 1192
Query: 1252 ARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWN 1311
A ER V YRE F+ MY+PWAY+LAQV VEIPY L Q++ YVII YPM+GY+WS YK+FW+
Sbjct: 1193 ATERNVFYRERFSRMYNPWAYSLAQVLVEIPYSLFQSIIYVIIVYPMVGYHWSVYKVFWS 1252
Query: 1312 FYGMFCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMY 1371
FY +FC+++ +NY GMLLV +TPN IA L S Y + NLFAG+++P P IP+WWIWMY
Sbjct: 1253 FYSIFCSLLIFNYFGMLLVVVTPNVHIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMY 1312
Query: 1372 YMMPTSWALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVLIIYPL 1431
Y+ PTSW LN ++TSQYGD++KE++ FGE KK+S+F++DYFG+ +D L + A VLI +P+
Sbjct: 1313 YLSPTSWVLNGLLTSQYGDMEKEILAFGEKKKVSAFLEDYFGYRYDSLALVAVVLIAFPI 1372
Query: 1432 VLAFLFAFCIERLNFLRR 1449
+LA LFAF I +LNF ++
Sbjct: 1373 LLASLFAFFIGKLNFQKK 1390
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GZ52|AB30G_ARATH ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1763 bits (4566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 827/1403 (58%), Positives = 1074/1403 (76%), Gaps = 28/1403 (1%)
Query: 47 DTDVEHALLWAEIERLPTYDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFIEK 106
D + E L WA +ERLPT+ R+ +L + V +G+ VIDVT+L ER + IE
Sbjct: 26 DDEEELRLQWATVERLPTFKRVTTALLARDE----VSGKGR-VIDVTRLEGAERRLLIEM 80
Query: 107 LIKHIEHDNLQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKG 166
L+K IE DNL+LL KIRKR+DKVGI+LPT+EVR+ NL VEA+C+V+HGKP+PTLWN+ KG
Sbjct: 81 LVKQIEDDNLRLLRKIRKRIDKVGIELPTVEVRFNNLSVEAECQVIHGKPIPTLWNTIKG 140
Query: 167 MISVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLK 226
++S + K E KI IL VSGI++PGRMTLLLGPPGCGK+T L+ALSG S+K
Sbjct: 141 LLSEF--ICSKK--ETKIGILKGVSGIVRPGRMTLLLGPPGCGKTTLLQALSGKFSDSVK 196
Query: 227 VTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVS 286
V GEV YNG L EF+P KTS+YISQNDLHI E++VRET+DFSA CQG+GSR E M E+S
Sbjct: 197 VGGEVCYNGCSLSEFIPEKTSSYISQNDLHIPELSVRETLDFSACCQGIGSRMEIMKEIS 256
Query: 287 RREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGG 346
R EK I+PDP +D YMKA SV+G+K LQTDYILKILGLD+CADT VG+A R GISGG
Sbjct: 257 RMEKLQEIIPDPAVDAYMKATSVEGLKNNLQTDYILKILGLDICADTRVGDATRPGISGG 316
Query: 347 QKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPE 406
+K+RLTTGE++VGP LFMDEI+NGLDSST +QI++C+QQL HI ++T LISLLQPAPE
Sbjct: 317 EKRRLTTGELVVGPATTLFMDEISNGLDSSTTFQIVSCLQQLAHIAEATILISLLQPAPE 376
Query: 407 TFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWL 466
TF+LFDD+ILM EGKI+YH P+ + FFE+ GF+CPERKGV+DFLQE++S+KDQ Q+W
Sbjct: 377 TFELFDDVILMGEGKIIYHAPRADICRFFEEFGFKCPERKGVADFLQEIMSKKDQEQYWC 436
Query: 467 HTELPYSYFSVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKA 526
H + PYSY SVD F KFKES L L EEL P++KS++ K+ + + YSL +WE+ KA
Sbjct: 437 HRDKPYSYISVDSFINKFKESNLGLLLKEELSKPFNKSQTRKDGLCYKKYSLGKWEMLKA 496
Query: 527 CMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVL 586
C RE LLM+RNSF+Y+FK+ L+ A + MTVFL+ D HGNY MGSL+ +L L
Sbjct: 497 CSRREFLLMKRNSFIYLFKSALLVFNALVTMTVFLQVGATTDSLHGNYLMGSLFTALFRL 556
Query: 587 LVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIG 646
L DG+PEL++TI RL VF KQ++L FYPAWAYAIP+ ILK+PLS++ S WT LTYYVIG
Sbjct: 557 LADGLPELTLTISRLGVFCKQKDLYFYPAWAYAIPSIILKIPLSVLDSFIWTLLTYYVIG 616
Query: 647 YSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISR 706
YSPEV RFF QF++L + + +SMFR +A++F+T A+ G++ IL + LFGGFVI +
Sbjct: 617 YSPEVKRFFLQFLILSTFNLSCVSMFRAIAAIFRTIIASTITGAISILVLSLFGGFVIPK 676
Query: 707 PSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIF 766
SMPAWL WGFW+SP++Y EIGL+ NEF +PRW K++ + TT G+++L+ RGLNF +
Sbjct: 677 SSMPAWLGWGFWLSPLSYAEIGLTANEFFSPRWSKVISSKTTAGEQMLDIRGLNFGRHSY 736
Query: 767 WISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSR 826
W + GAL G L N + LALT+ + SR +ISHEK Y P++E+ +
Sbjct: 737 WTAFGALVGFVLFFNALYVLALTYQNNPQRSRAIISHEK-----------YSRPIEEDFK 785
Query: 827 STPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRP 886
P + G+++LPF+PLTV FQ+++YY++TP + +LL D+TG+L+P
Sbjct: 786 PCPKITSRAKTGKIILPFKPLTVTFQNVQYYIETP--------QGKTRQLLSDITGALKP 837
Query: 887 GVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHS 946
GVLT+LMGVSGAGKTTL+DVL+GRKT G ++GEIK+ GYPKVQETFARVSGYCEQ DIHS
Sbjct: 838 GVLTSLMGVSGAGKTTLLDVLSGRKTRGIIKGEIKVGGYPKVQETFARVSGYCEQFDIHS 897
Query: 947 PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQR 1006
PNITVEES+ +SAWLRL I+SKTK E V EVLET+ELD IKDS+VG+PG++GLS EQR
Sbjct: 898 PNITVEESLKYSAWLRLPYNIDSKTKNELVKEVLETVELDDIKDSVVGLPGISGLSIEQR 957
Query: 1007 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFE 1066
KRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN+ TGRT+VCTIHQPSIDIFE
Sbjct: 958 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTVVCTIHQPSIDIFE 1017
Query: 1067 AFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEA 1126
FDELIL+K GG+++Y GP G++SS+VIEYFE SG+PKI+ N NPATW++++TS SAE
Sbjct: 1018 TFDELILMKNGGQLVYYGPPGQNSSKVIEYFESFSGLPKIQKNCNPATWILDITSKSAEE 1077
Query: 1127 ELCVDFAQIFRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLS 1186
+L +DF+Q +++S LY+ N+ +V+QL++ GS+ L FP++FS+ W Q K+CLWK H S
Sbjct: 1078 KLGIDFSQSYKDSTLYKQNKMVVEQLSSASLGSEALRFPSQFSQTAWVQLKACLWKQHYS 1137
Query: 1187 YWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSS 1246
YWR+PS+N+ RI+ S L G+LFW + ++NQQDL +I GS Y VVF G+NNC++
Sbjct: 1138 YWRNPSHNITRIVFILLDSTLCGLLFWQKAEDINNQQDLISIFGSMYTLVVFPGMNNCAA 1197
Query: 1247 VIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAY 1306
VI +A ER V YRE FA MYS WAY+ +QV +E+PY L+Q+L II YP IGY+ S Y
Sbjct: 1198 VINFIAAERNVFYRERFARMYSSWAYSFSQVLIEVPYSLLQSLLCTIIVYPTIGYHMSVY 1257
Query: 1307 KLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKW 1366
K+FW+ Y +FC+++ +NY GML+V+LTPN +A L S +++ NLFAGF+IP KIPKW
Sbjct: 1258 KMFWSLYSIFCSLLIFNYSGMLMVALTPNIHMAVTLRSSFFSMLNLFAGFVIPKQKIPKW 1317
Query: 1367 WIWMYYMMPTSWALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVL 1426
WIWMYY+ PTSW L +++SQYGD+DKE++VFGE K++S+F++DYFG+ H+ L + A VL
Sbjct: 1318 WIWMYYLSPTSWVLEGLLSSQYGDVDKEILVFGEKKRVSAFLEDYFGYKHESLAVVAFVL 1377
Query: 1427 IIYPLVLAFLFAFCIERLNFLRR 1449
I YP+++A LFAF + +L+F ++
Sbjct: 1378 IAYPIIVATLFAFFMSKLSFQKK 1400
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC83|AB41G_ARATH ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1760 bits (4558), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 830/1394 (59%), Positives = 1068/1394 (76%), Gaps = 30/1394 (2%)
Query: 56 WAEIERLPTYDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFIEKLIKHIEHDN 115
WA +ERLPT+ R+ +L + +IDVTKL ER + IEKL+K IE DN
Sbjct: 34 WATVERLPTFKRVTTALLHTG-------DDSSDIIDVTKLEDAERRLLIEKLVKQIEADN 86
Query: 116 LQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLS 175
L+LL KIRKR+D+VGI+LPT+EVR+ +L VEA+C+VVHGKP+PTLWN+ KG +S K
Sbjct: 87 LRLLRKIRKRIDEVGIELPTVEVRFNDLSVEAECQVVHGKPIPTLWNTIKGSLS---KFV 143
Query: 176 GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG 235
K E KI IL VSGI++PGRMTLLLGPPGCGK+T L+ALSG L S+KV G+VSYNG
Sbjct: 144 CSKK-ETKIGILKGVSGIVRPGRMTLLLGPPGCGKTTLLQALSGRLSHSVKVGGKVSYNG 202
Query: 236 YKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIV 295
L EF+P KTS+YISQNDLHI E++VRET+DFSA CQG+GSR E M E+SRREK IV
Sbjct: 203 CLLSEFIPEKTSSYISQNDLHIPELSVRETLDFSACCQGIGSRMEIMKEISRREKLKEIV 262
Query: 296 PDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGE 355
PDPDID YMKAISV+G+K ++QTDYILKILGLD+CADT G+A R GISGGQK+RLTTGE
Sbjct: 263 PDPDIDAYMKAISVEGLKNSMQTDYILKILGLDICADTRAGDATRPGISGGQKRRLTTGE 322
Query: 356 MIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415
++VGP L MDEI+NGLDSST +QI++C+QQL HI +T LISLLQPAPETF+LFDD+I
Sbjct: 323 IVVGPATTLLMDEISNGLDSSTTFQIVSCLQQLAHIAGATILISLLQPAPETFELFDDVI 382
Query: 416 LMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYF 475
L+ EGKI+YH P+ + FFE CGF+CPERKGV+DFLQEV+SRKDQ Q+W H PYSY
Sbjct: 383 LLGEGKIIYHAPRADICKFFEGCGFKCPERKGVADFLQEVMSRKDQEQYWCHRSKPYSYI 442
Query: 476 SVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLM 535
SVD F KKF ES L L EEL P+DKS++ K+++ F YSLS+WE+ KAC RE+LLM
Sbjct: 443 SVDSFIKKFNESNLGFLLKEELSKPFDKSQTRKDSLCFRKYSLSKWEMLKACSRREILLM 502
Query: 536 RRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELS 595
+RNSF+Y+FK+ L+ A + MTVFL+ D HGNY MGS++ +L LL DG+PEL+
Sbjct: 503 KRNSFIYLFKSGLLVFNALVTMTVFLQAGATRDARHGNYLMGSMFTALFRLLADGLPELT 562
Query: 596 MTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFF 655
+TI RL VF KQ++L FYPAWAYAIP+ IL++PLS++ S WT LTYYVIGYSPEV RFF
Sbjct: 563 LTISRLGVFCKQKDLYFYPAWAYAIPSIILRIPLSVLDSFIWTVLTYYVIGYSPEVGRFF 622
Query: 656 RQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKW 715
R FI+L H + ISMFR +AS+ +T A G++ +L + LFGGFVI + SMP WL W
Sbjct: 623 RHFIILLTFHLSCISMFRAIASICRTFVACSITGAISVLLLALFGGFVIPKSSMPTWLGW 682
Query: 716 GFWISPVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFG 775
GFW+SP++Y EIGL+ NEF +PRW+K+ N T G+++L+ RGLNF +W + GAL G
Sbjct: 683 GFWLSPLSYAEIGLTANEFFSPRWRKLTSGNITAGEQVLDVRGLNFGRHSYWTAFGALVG 742
Query: 776 IALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKES 835
L N +TLALT+ + SR ++SH K ++ E E+ + P +
Sbjct: 743 FVLFFNALYTLALTYRNNPQRSRAIVSHGKNSQCSE-----------EDFKPCPEITSRA 791
Query: 836 YKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGV 895
G+++LPF+PLTV FQ+++YY++TP + +LL+D+TG+L+PGVLT+LMGV
Sbjct: 792 KTGKVILPFKPLTVTFQNVQYYIETP--------QGKTRQLLFDITGALKPGVLTSLMGV 843
Query: 896 SGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESV 955
SGAGKTTL+DVL+GRKT G ++GEI++ GYPKVQETFARVSGYCEQ DIHSPNITVEES+
Sbjct: 844 SGAGKTTLLDVLSGRKTRGIIKGEIRVGGYPKVQETFARVSGYCEQFDIHSPNITVEESL 903
Query: 956 IFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVEL 1015
+SAWLRL I++KTK E V EVLET+EL+ IKDS+VG+PG++GLSTEQRKRLTIAVEL
Sbjct: 904 KYSAWLRLPYNIDAKTKNELVKEVLETVELEDIKDSMVGLPGISGLSTEQRKRLTIAVEL 963
Query: 1016 VANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075
V+NPSIIF+DEPTTGLDARAAAIVMRAVKN+ TGRT+VCTIHQPSIDIFE FDELIL+K
Sbjct: 964 VSNPSIIFLDEPTTGLDARAAAIVMRAVKNVAETGRTVVCTIHQPSIDIFETFDELILMK 1023
Query: 1076 TGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQI 1135
GG+++Y GPLGKHSS+VI+YFE I GVPK++ N NPATW++++T SAE L +DFAQ
Sbjct: 1024 DGGQLVYYGPLGKHSSKVIKYFESIPGVPKVQKNCNPATWMLDITCKSAEHRLGMDFAQA 1083
Query: 1136 FRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNL 1195
+++S LY+ N+ +V+QL++ GS+ L FP+R+S+ WGQ K+CLWK H SYWR+PS+NL
Sbjct: 1084 YKDSTLYKENKMVVEQLSSASLGSEALSFPSRYSQTGWGQLKACLWKQHCSYWRNPSHNL 1143
Query: 1196 MRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARER 1255
RI+ SLL +LFW + ++NQQDLF+I GS Y V+F GINNC++V+ +A ER
Sbjct: 1144 TRIVFILLNSLLCSLLFWQKAKDINNQQDLFSIFGSMYTIVIFSGINNCATVMNFIATER 1203
Query: 1256 TVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGM 1315
V YRE FA MYS WAY+ +QV VE+PY L+Q+L II YPMIGY+ S YK+FW+ Y +
Sbjct: 1204 NVFYRERFARMYSSWAYSFSQVLVEVPYSLLQSLLCTIIVYPMIGYHMSVYKMFWSLYSI 1263
Query: 1316 FCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMP 1375
FC+++ +NY GML+V+LTPN +A L S +++ NLFAGF++P KIPKWWIWMYY+ P
Sbjct: 1264 FCSLLIFNYCGMLMVALTPNIHMALTLRSTFFSMVNLFAGFVMPKQKIPKWWIWMYYLSP 1323
Query: 1376 TSWALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAF 1435
TSW L +++SQYGD++KE+ VFGE K +S+F++DYFG+ HD L + A VLI +P+++A
Sbjct: 1324 TSWVLEGLLSSQYGDVEKEITVFGEKKSVSAFLEDYFGYKHDSLAVVAFVLIAFPIIVAS 1383
Query: 1436 LFAFCIERLNFLRR 1449
LFAF + +LNF ++
Sbjct: 1384 LFAFFMSKLNFQKK 1397
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC82|AB42G_ARATH ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1760 bits (4558), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 834/1417 (58%), Positives = 1073/1417 (75%), Gaps = 40/1417 (2%)
Query: 37 SSSAISSRKEDTDVEHALLWAEIERLPTYDRLKASLFDVNSHGNLVDNQGK----LVIDV 92
+S + D D + W IER PT++R+ +LF D +GK V+DV
Sbjct: 12 ASRNTNENGHDDDDQLRSQWVAIERSPTFERITTALFCKR------DEKGKKSQRRVMDV 65
Query: 93 TKLGALERHVFIEKLIKHIEHDNLQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVV 152
+KL L+R +FI+ LI+H+E+DN LL KIRKR+D+VGI LP IE R+ +L VEA+CEVV
Sbjct: 66 SKLDDLDRRLFIDDLIRHVENDNHVLLQKIRKRIDEVGIDLPKIEARFSDLFVEAECEVV 125
Query: 153 HGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKST 212
+GKP+PTLWN+ +S + K KI+IL VSGI++P RMTLLLGPP CGK+T
Sbjct: 126 YGKPIPTLWNAISSKLSRFMCSNQAK----KISILKGVSGIIRPKRMTLLLGPPSCGKTT 181
Query: 213 FLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARC 272
L ALSG LDPSLK G++SYNG+ EFVP KTS+Y+SQNDLHI E++VRET+DFS
Sbjct: 182 LLLALSGRLDPSLKTRGDISYNGHLFSEFVPEKTSSYVSQNDLHIPELSVRETLDFSGCF 241
Query: 273 QGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCAD 332
QG GSR E E+SRREK GIVPDPDID YMKA S++G K LQTDYILKILGL +CAD
Sbjct: 242 QGTGSRLEMTKEISRREKLKGIVPDPDIDAYMKAASIEGSKTNLQTDYILKILGLTICAD 301
Query: 333 TMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHIT 392
T VG+A R GISGGQK+RLTTGEMIVGP K LFMDEI+NGLDSST +QI++C+QQ ++
Sbjct: 302 TRVGDASRPGISGGQKRRLTTGEMIVGPIKTLFMDEISNGLDSSTTFQILSCLQQFARLS 361
Query: 393 DSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFL 452
+ T L+SLLQPAPETF+LFDD+ILM EGKI+YHGP+D V +FFEDCGF+CP RK V++FL
Sbjct: 362 EGTILVSLLQPAPETFELFDDLILMGEGKIIYHGPRDFVCSFFEDCGFKCPNRKSVAEFL 421
Query: 453 QEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAIS 512
QEV+SRKDQ Q+W H E Y Y S++ F +KFK+S L +L + L YDKS++ K+ +
Sbjct: 422 QEVISRKDQEQYWCHIEKTYCYVSIESFIEKFKKSDLGLELQDRLSKTYDKSQTQKDGLC 481
Query: 513 FSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHG 572
F YSLS W++ KAC RE LLM+RNSFVYVFK+ LI + +AMTV+LRT D H
Sbjct: 482 FRKYSLSNWDMLKACSRREFLLMKRNSFVYVFKSGLLIFIGFIAMTVYLRTGSTRDSLHA 541
Query: 573 NYYMGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLV 632
NY MGSL+FSL LL DG+PEL++TI R+ VF KQ+EL FYPAWAYAIP+ ILK+P+S +
Sbjct: 542 NYLMGSLFFSLFKLLADGLPELTLTISRIAVFCKQKELYFYPAWAYAIPSAILKIPISFL 601
Query: 633 ASLAWTCLTYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVV 692
S WT LTYYVIGYSPE+ RF RQF++LFA H + ISMFR +A+VF+ A T GS+
Sbjct: 602 ESFLWTMLTYYVIGYSPEMGRFIRQFLILFALHLSCISMFRAIAAVFRDFVVATTVGSIS 661
Query: 693 ILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQE 752
I+ + +FGGF++ +PSMP+WL+WGFW+SP++Y EIGL+ NEF APRW K+ N T+G++
Sbjct: 662 IVLLSVFGGFIVRKPSMPSWLEWGFWLSPLSYAEIGLTANEFFAPRWGKITSENRTLGEQ 721
Query: 753 ILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQES 812
+L++RGLNF +W + GAL G L N F LALTFLK+S SRV++SHEK
Sbjct: 722 VLDARGLNFGNQSYWNAFGALIGFTLFFNTVFALALTFLKTSQRSRVIVSHEK------- 774
Query: 813 EDSSYGEPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADR 872
N++S+ +K + + + LPFEPLT FQD++Y ++TP +
Sbjct: 775 -----------NTQSSENDSKIASRFKNALPFEPLTFTFQDVQYIIETP--------QGK 815
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETF 932
KL+LL VTG+ +PGVLTALMGVSGAGKTTL+DVL+GRKT G ++G+I++ GY KVQ+TF
Sbjct: 816 KLQLLSGVTGAFKPGVLTALMGVSGAGKTTLLDVLSGRKTFGDIKGQIEVGGYVKVQDTF 875
Query: 933 ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL 992
+RVSGYCEQ DIHSPN+TV+ES+ +SAWLRL I+S+TK VNEVLETIEL+ IKDS+
Sbjct: 876 SRVSGYCEQFDIHSPNLTVQESLKYSAWLRLTSNISSETKCAIVNEVLETIELEEIKDSI 935
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRT 1052
VGIPG++GL+TEQRKRLTIAVELV+NPSIIFMDEPTTGLDARAAAIVMRAVKNI TGRT
Sbjct: 936 VGIPGISGLTTEQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAAIVMRAVKNIAETGRT 995
Query: 1053 IVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNP 1112
+VCTIHQPSIDIFEAFDELIL+K GG+IIY GPLG+HSS+VIEYF I GVPK++ N NP
Sbjct: 996 VVCTIHQPSIDIFEAFDELILMKNGGKIIYYGPLGQHSSKVIEYFMRIHGVPKLKENSNP 1055
Query: 1113 ATWVIEVTSTSAEAELCVDFAQIFRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNF 1172
ATW++++TS S+E +L VD AQ++ ES L++ N+ +++Q GS+ L +R+++
Sbjct: 1056 ATWILDITSKSSEDKLGVDLAQMYEESTLFKENKMVIEQTRCTSLGSERLILSSRYAQTS 1115
Query: 1173 WGQFKSCLWKLHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSS 1232
W QFK+CLWK HLSYWR+PSYNL RI+ + +L G+LFW ++++NQQDLFN+ GS
Sbjct: 1116 WEQFKACLWKQHLSYWRNPSYNLTRIIFMSFTCMLCGILFWQKAKEINNQQDLFNVFGSM 1175
Query: 1233 YLAVVFLGINNCSSVIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYV 1292
+ V+F GINNCS+V+ +VA ER V YRE F+ MY+ WAY+LAQV VEIPY L Q++ YV
Sbjct: 1176 FTVVLFSGINNCSTVLFSVATERNVFYRERFSRMYNSWAYSLAQVLVEIPYSLFQSIVYV 1235
Query: 1293 IIGYPMIGYYWSAYKLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNL 1352
II YPM+GY+WS +K+FW+FY +FCT++ +NY GMLLV +TPN IA L S Y + NL
Sbjct: 1236 IIVYPMVGYHWSVFKVFWSFYSIFCTLLIFNYFGMLLVVVTPNVHIAFTLRSSFYAIVNL 1295
Query: 1353 FAGFLIPGPKIPKWWIWMYYMMPTSWALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYF 1412
FAG+++P P IP+WWIWMYY+ PTSW LN ++TSQYGD++KE++ FGE KK+S F++DYF
Sbjct: 1296 FAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEILAFGEKKKVSDFLEDYF 1355
Query: 1413 GFHHDRLPITAAVLIIYPLVLAFLFAFCIERLNFLRR 1449
G+ +D L + A VLI +P++LA LFAF I +LNF ++
Sbjct: 1356 GYRYDSLALVAVVLIAFPILLASLFAFFIGKLNFQKK 1392
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC86|AB35G_ARATH ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1572 bits (4071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 781/1452 (53%), Positives = 1047/1452 (72%), Gaps = 39/1452 (2%)
Query: 11 ESVRIELAEIGRSLRSSFRLPTSSYRSSSAISSRKEDTDVEHALLWAEIERLPTYDRLKA 70
+++ +++ R++ F TSS R+ S ED E AL WA IE+LPTY+RL+
Sbjct: 17 QTISRSVSKASRNMEDIFN--TSSRRTKSV----NED---EEALKWASIEKLPTYNRLRT 67
Query: 71 SLF----DVNSHGNLVDNQGKLVIDVTKLGALERHVFIEKLIKHIEHDNLQLLWKIRKRV 126
SL + + +GN + N+ +DVTKL ER FI+ + K E DN ++L K+R R+
Sbjct: 68 SLMPELGEDDVYGNQILNKA---VDVTKLDGEERQKFIDMVFKVAEQDNERILTKLRNRI 124
Query: 127 DKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYK-SLEAKIN 185
D+VGI+LPT+EVRY +L V+A C + LP+L N+ + M + G + + +A++
Sbjct: 125 DRVGIQLPTVEVRYDHLTVKADC-YTGDRSLPSLLNAVRNMGEAALGMIGIRLAKKAQLT 183
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
IL VSGI+KP RMTLLLGPP GK+T L AL+G LD SL V+GEV+YNGY+L EFVP K
Sbjct: 184 ILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIK 243
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
TSAYISQNDLH+ MTV+ET+DFSARCQGVG+R + + E++RREK+AGI P+ D+D +MK
Sbjct: 244 TSAYISQNDLHVGIMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMK 303
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
A + +GVK +L TDY LKILGLD+C DT+VG+ M RGISGGQKKR+TTGEMIVGPTK LF
Sbjct: 304 ASAAQGVKSSLITDYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLF 363
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYH 425
MDEI+ GLDSST +QI+ C+QQ+VH+T++T LISLLQPAPETFDLFDDIIL++EG+IVY
Sbjct: 364 MDEISTGLDSSTTFQIVKCLQQIVHLTEATVLISLLQPAPETFDLFDDIILLSEGQIVYQ 423
Query: 426 GPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFK 485
GP+DH+L FFE GF+CPERKG +DFLQEV S+KDQ Q+W+ PY Y V F+ FK
Sbjct: 424 GPRDHILEFFESFGFKCPERKGTADFLQEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFK 483
Query: 486 ESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFK 545
+ + KL EL VPYDKSKS K A+ F YS+ + EL K+C +E +LM+RNSF YVFK
Sbjct: 484 KFHVGSKLSNELSVPYDKSKSHKAALMFDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFK 543
Query: 546 TTQLIMLATMAMTVFLRTRM----EIDVFHGNYYMGSLYFSLVVLLVDGMPELSMTIQRL 601
T Q+I++A + T++LRT M EID N Y+GSL F+++V + +G+ E++MTIQRL
Sbjct: 544 TVQIIIIAAITSTLYLRTEMHTRNEID---ANIYVGSLLFAMIVNMFNGLAEMAMTIQRL 600
Query: 602 EVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFILL 661
VFYKQ++L F+P W Y +P +L +P+S+ S AW +TYY IGY+P+ RFF+QF+++
Sbjct: 601 PVFYKQRDLLFHPPWTYTLPTFLLGIPISIFESTAWMVVTYYSIGYAPDAERFFKQFLII 660
Query: 662 FASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISP 721
F + +FRF+AS +T A T G +V+L VFL GGF++ R +P W +W +WISP
Sbjct: 661 FLIQQMAAGIFRFIASTCRTMTIANTGGVLVLLVVFLTGGFLLPRSEIPVWWRWAYWISP 720
Query: 722 VTYGEIGLSVNEFLAPRWQKMLPTNTT--IGQEILESRGLNFDGFIFWISLGALFGIALL 779
++Y ++VNE APRW + N+T +G +L + D +WI +G L G ++
Sbjct: 721 LSYAFNAITVNELFAPRWMNKMSGNSTTRLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVI 780
Query: 780 LNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKESYKGR 839
N FTLALT+L G ++ ++ E+ E G +++ T M + + KG
Sbjct: 781 FNGFFTLALTYLDPLGKAQAILPKEE----DEEAKGKAG-----SNKETEMESVSAKKG- 830
Query: 840 MVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAG 899
MVLPF PL ++F D+KY+VD P EMRE+G + +L+LL VT + RPGVLTALMGVSGAG
Sbjct: 831 MVLPFTPLAMSFDDVKYFVDMPAEMREQGVQETRLQLLKGVTSAFRPGVLTALMGVSGAG 890
Query: 900 KTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSA 959
KTTLMDVLAGRKT GY+EG++++SG+PK QETFAR+SGYCEQTDIHSP +TV ES+IFSA
Sbjct: 891 KTTLMDVLAGRKTGGYIEGDVRVSGFPKKQETFARISGYCEQTDIHSPQVTVRESLIFSA 950
Query: 960 WLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP 1019
+LRLA E++ + K FV++V+E +EL ++D++VG+PGV GLSTEQRKRLTIAVELVANP
Sbjct: 951 FLRLAKEVSKEDKLMFVDQVMELVELVDLRDAIVGLPGVTGLSTEQRKRLTIAVELVANP 1010
Query: 1020 SIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079
SIIFMDEPT+GLDARAAAIVMRAV+N V+TGRT+VCTIHQPSIDIFEAFDEL+L+K GG
Sbjct: 1011 SIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGH 1070
Query: 1080 IIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQIFRES 1139
+IY GPLG++S +V+EYFE GVPKI YNPATW++E +S +AE +L VDFA++++ S
Sbjct: 1071 VIYSGPLGRNSHKVVEYFESFPGVPKIPEKYNPATWMLEASSLAAELKLGVDFAELYKAS 1130
Query: 1140 VLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIM 1199
L + N+ LV++L+ PP G+ DL+F T+FS+N WGQFKSCLWK +YWRSP YNL+R +
Sbjct: 1131 ALCQRNKALVQELSVPPQGATDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFI 1190
Query: 1200 HTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARERTVMY 1259
T SL+ G +FW G K N QDL ++G+ Y AVVF+GINNCS+V P VA ERTV Y
Sbjct: 1191 FTLATSLMIGSVFWQIGGKRSNVQDLTMVIGAIYAAVVFVGINNCSTVQPMVAVERTVFY 1250
Query: 1260 REGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFCTM 1319
RE AGMYS YA++QVT E+PY+LIQ Y +I Y M+G+ W A K W + + +
Sbjct: 1251 REKAAGMYSAIPYAISQVTCELPYVLIQTTYYSLIIYSMVGFEWKASKFLWFIFINYFSF 1310
Query: 1320 MFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWA 1379
+++ Y GM+ VSLTPN +ASI +S Y +FNLF+GF IP PKIPKWW+W Y++ P +W
Sbjct: 1311 LYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWVWYYWICPVAWT 1370
Query: 1380 LNAMVTSQYGDIDKEMIVFGETKKLS--SFIQDYFGFHHDRLPITAAVLIIYPLVLAFLF 1437
+ ++TSQYGD++ + + G L+ +I+D +GF D + A VL+ + + AF+F
Sbjct: 1371 IYGLITSQYGDVETPIALLGGAPGLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAFIF 1430
Query: 1438 AFCIERLNFLRR 1449
AFCI+ LNF R
Sbjct: 1431 AFCIKTLNFQSR 1442
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XIE2|AB36G_ARATH ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1561 bits (4041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 770/1440 (53%), Positives = 1034/1440 (71%), Gaps = 35/1440 (2%)
Query: 38 SSAISSRKEDTDVEHALLWAEIERLPTYDRLKASLFDVNSHGNLVDNQ-GKLVIDVTKLG 96
SS + D E AL WA IE+LPTY RL+ +L + ++ NQ +DVTKL
Sbjct: 37 SSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDVTKLD 96
Query: 97 ALERHVFIEKLIKHIEHDNLQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKP 156
+R FI+ + K E DN ++L K+R R+D+VGIKLPT+EVRY++L ++A C +
Sbjct: 97 GEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADC-YTGNRS 155
Query: 157 LPTLWNSFKGMISVLPKLSGYK-SLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLK 215
LPTL N + M + G + + +A++ IL +SG++KPGRMTLLLGPP GK+T L
Sbjct: 156 LPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTTLLL 215
Query: 216 ALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGV 275
AL+G LD SL+V+G+++YNGY+L+EFVP KTSAYISQNDLH+ MTV+ET+DFSARCQGV
Sbjct: 216 ALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARCQGV 275
Query: 276 GSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMV 335
G+R + + E++RREK+AGI P+ D+D +MKA + +GVK +L TDY LKILGLD+C DT+V
Sbjct: 276 GTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKDTIV 335
Query: 336 GNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDST 395
G+ M RGISGGQKKR+TTGEMIVGPTK LFMDEI+ GLDSST +QI+ C+QQ+VH+ ++T
Sbjct: 336 GDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLNEAT 395
Query: 396 ALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEV 455
L+SLLQPAPETFDLFDDIIL++EG+IVY GP+D++L FFE GF+CPERKG +DFLQEV
Sbjct: 396 VLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFLQEV 455
Query: 456 LSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSV 515
S+KDQ Q+W++ PY Y V F+ ++K + K+ EL VP+DKS+ K A+ F
Sbjct: 456 TSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALVFDK 515
Query: 516 YSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEI-DVFHGNY 574
YS+S+ EL K+C +E LLM+RN+F YVFKT Q++++A + T+FLRT M + N
Sbjct: 516 YSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGDANL 575
Query: 575 YMGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVAS 634
Y+G+L F +++ + +G E++M + RL VFYKQ++L FYP+W +++P +L +P S++ S
Sbjct: 576 YIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSILES 635
Query: 635 LAWTCLTYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVIL 694
AW +TYY IG++P+ RFF+QF+L+F + S+FR +ASV +T A T G++ +L
Sbjct: 636 TAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGALTLL 695
Query: 695 FVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRW-QKMLPTNTTI--GQ 751
VFL GGF++ + +P W W +W+SP+TY GL VNE APRW KM +N+TI G
Sbjct: 696 LVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIKLGT 755
Query: 752 EILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQE 811
+L + + +WIS+GAL L NI FTLALT+L G ++ E E
Sbjct: 756 MVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEE------E 809
Query: 812 SEDSSYGEPVKENSRSTPMTNK--ESYKGRM------------------VLPFEPLTVAF 851
+ED+ G+ S ST N+ E GRM VLPF PL ++F
Sbjct: 810 NEDADQGKDPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAGNKKGMVLPFTPLAMSF 869
Query: 852 QDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRK 911
D+KY+VD P EMR++G + +L+LL VTG+ RPGVLTALMGVSGAGKTTLMDVLAGRK
Sbjct: 870 DDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 929
Query: 912 TSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKT 971
T GY+EG+++ISG+PKVQETFAR+SGYCEQTDIHSP +TV ES+IFSA+LRL E+
Sbjct: 930 TGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDE 989
Query: 972 KAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031
K FV++V+E +ELD+++DS+VG+PGV GLSTEQRKRLTIAVELVANPSIIFMDEPT+GL
Sbjct: 990 KMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1049
Query: 1032 DARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSS 1091
DARAAAIVMRAV+N V+TGRT+VCTIHQPSIDIFEAFDEL+L+K GG++IY GPLG++S
Sbjct: 1050 DARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSH 1109
Query: 1092 QVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQIFRESVLYENNRELVKQ 1151
+V+EYFE GV KI YNPATW++E +S +AE +L VDFA+++ +S L++ N+ LVK+
Sbjct: 1110 KVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVKE 1169
Query: 1152 LNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIMHTATASLLFGVL 1211
L+ PP G+ DL+F T+FS+N WGQFKSCLWK +YWRSP YNL+R + T SLL G +
Sbjct: 1170 LSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGTV 1229
Query: 1212 FWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARERTVMYREGFAGMYSPWA 1271
FW G N DL ++G+ Y A++F+GINNCS+V P VA ERTV YRE AGMYS
Sbjct: 1230 FWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRERAAGMYSAMP 1289
Query: 1272 YALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFCTMMFYNYLGMLLVS 1331
YA++QVT E+PY+LIQ + Y +I Y M+G+ W A K FW + + + +++ Y GM+ VS
Sbjct: 1290 YAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTVS 1349
Query: 1332 LTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWALNAMVTSQYGDI 1391
LTPN +ASI +S Y +FNLF+GF IP PKIPKWWIW Y++ P +W + ++ SQYGD+
Sbjct: 1350 LTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDV 1409
Query: 1392 DKEMIVFGETKKLS--SFIQDYFGFHHDRLPITAAVLIIYPLVLAFLFAFCIERLNFLRR 1449
+ + V G L+ +I+D++GF D + AAVLI + + AF+FAFCI LNF R
Sbjct: 1410 ETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469
|
Key factor that controls the extent of cell death in the defense response. Neccessary for both callose deposition and glucosinolate activation in response to pathogens. Required for limiting invasion by nonadapted powdery mildews. Confers resistance to cadmium (Cd) and lead (Pb), probably as an efflux pump of Cd2+ or Cd conjugates, and possibly, of chemicals that mediate pathogen resistance. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1555 bits (4025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 751/1450 (51%), Positives = 1039/1450 (71%), Gaps = 34/1450 (2%)
Query: 26 SSFRLPTSSYRSSSAISSR-----KEDTDVEHALLWAEIERLPTYDRLKASLFDVNSHGN 80
+S R S +RS + SR +++ D E AL WA +ERLPTYDR++ + V+S
Sbjct: 9 ASLRREGSMWRSGGDVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDG 68
Query: 81 LVDNQGKLVIDVTKLGALERHVFIEKLIKHIEHDNLQLLWKIRKRVDKVGIKLPTIEVRY 140
+ K+ +DV +LGA E IE+L++ + D+ + L K+R+R+D+VGI PTIEVR+
Sbjct: 69 GAGGE-KVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRF 127
Query: 141 KNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPK-LSGYKSLEAKINILNHVSGILKPGRM 199
+NL VEA V + + LPTL NS + + L + + + +L+ VSGI+KP RM
Sbjct: 128 ENLEVEADVHVGN-RGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRM 186
Query: 200 TLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAE 259
TLLLGPPG GK+T L AL+G LD LKV+G+V+YNG+ + EFVP +T+AYISQ+DLHI E
Sbjct: 187 TLLLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGE 246
Query: 260 MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTD 319
MTVRET+ FSARCQGVG+R E + E++RREK A I PD DID YMKA ++ G + ++ TD
Sbjct: 247 MTVRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTD 306
Query: 320 YILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAY 379
YILKILGLD+CADT+VGN M RGISGGQ+KR+TTGEM+VGP +ALFMDEI+ GLDSST Y
Sbjct: 307 YILKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTY 366
Query: 380 QIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCG 439
QI+ ++Q +HI TA+ISLLQPAPET++LFDDIIL+++G++VY GP++HVL FFE G
Sbjct: 367 QIVNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMG 426
Query: 440 FRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLV 499
FRCP RKGV+DFLQEV SRKDQ Q+W + PY + V F+ F+ + + + EL
Sbjct: 427 FRCPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSE 486
Query: 500 PYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTV 559
P+D+++S A++ S Y +SR EL KA + RELLLM+RN+F+Y+FK L ++A + MT
Sbjct: 487 PFDRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTT 546
Query: 560 FLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYA 619
F RT M D +G Y+G+LYF+L ++ +G EL+MT+ +L VF+KQ++L F+PAWAY
Sbjct: 547 FFRTSMRHDRDYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYT 606
Query: 620 IPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVF 679
IP+ IL++P++ + + +TYYVIG+ P V RFF+Q++LL A + S ++FRF+A +
Sbjct: 607 IPSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIG 666
Query: 680 QTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRW 739
+ + T G + +L GGF+++RP + W WG+WISP++Y + +S NEFL W
Sbjct: 667 RDMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSW 726
Query: 740 QKMLP-TNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSR 798
++LP N T+G +L+SRG+ + +WI LGAL G LL N+ +T+AL+ L S
Sbjct: 727 SQILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSH 786
Query: 799 VMISHEKL-------------------AKMQESEDSSYGEPVKENSRSTPMTNKESYKGR 839
+S + L ++ QE E S + +NS + S KG
Sbjct: 787 ASMSEDALKEKHANLTGEVVEGQKDTKSRKQELELSHIAD---QNSGINSADSSASRKG- 842
Query: 840 MVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAG 899
MVLPF PL+++F D++Y VD P M+ +G + +L LL V+GS RPGVLTALMGVSGAG
Sbjct: 843 MVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAG 902
Query: 900 KTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSA 959
KTTLMDVLAGRKT GY+EG+I+ISGYPK QETFAR+SGYCEQ DIHSP++TV ES++FSA
Sbjct: 903 KTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSA 962
Query: 960 WLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP 1019
WLRL E++S+ + F+ EV++ +EL +++ +LVG+PGV+GLSTEQRKRLTIAVELVANP
Sbjct: 963 WLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANP 1022
Query: 1020 SIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079
SIIFMDEPT+GLDARAAAIVMR V+N VNTGRT+VCTIHQPSIDIFEAFDEL L+K GG
Sbjct: 1023 SIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGE 1082
Query: 1080 IIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQIFRES 1139
IY GP+G++SS++IEYFEGI GV +I++ YNPATW++EVTS++ E L VDF++I+R+S
Sbjct: 1083 EIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQS 1142
Query: 1140 VLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIM 1199
LY+ N+EL+++L+TPPPGS DL+FPT++SR+F Q +CLWK + SYWR+PSY +R++
Sbjct: 1143 ELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLL 1202
Query: 1200 HTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARERTVMY 1259
T +L+FG +FW+ G + QQDLFN +GS Y AV+++G+ N SV P V ERTV Y
Sbjct: 1203 FTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFY 1262
Query: 1260 REGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFCTM 1319
RE AGMYS + YA QV +E+PY+++Q L Y ++ Y MIG+ W+ K W + M+ T+
Sbjct: 1263 RERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTL 1322
Query: 1320 MFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWA 1379
+++ + GM+ V LTPN IA+I+SS Y ++NLF+G+LIP PKIP WW W ++ P +W
Sbjct: 1323 LYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWT 1382
Query: 1380 LNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAFLFAF 1439
L +V SQ+GDI + ++ G+T+ ++ F+ DYFGFHH+ L + A V +++ + AFLF+F
Sbjct: 1383 LYGLVASQFGDI--QHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSF 1440
Query: 1440 CIERLNFLRR 1449
I + NF RR
Sbjct: 1441 AIMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1449 | ||||||
| 225450466 | 1448 | PREDICTED: pleiotropic drug resistance p | 0.998 | 0.999 | 0.748 | 0.0 | |
| 296089838 | 1406 | unnamed protein product [Vitis vinifera] | 0.969 | 0.999 | 0.734 | 0.0 | |
| 147780242 | 1417 | hypothetical protein VITISV_037751 [Viti | 0.977 | 1.0 | 0.730 | 0.0 | |
| 75321780 | 1447 | RecName: Full=Pleiotropic drug resistanc | 0.997 | 0.998 | 0.714 | 0.0 | |
| 297816648 | 1450 | ATPDR9/PDR9 [Arabidopsis lyrata subsp. l | 0.997 | 0.996 | 0.680 | 0.0 | |
| 15231821 | 1450 | ABC transporter G family member 37 [Arab | 0.997 | 0.996 | 0.674 | 0.0 | |
| 356565445 | 1452 | PREDICTED: pleiotropic drug resistance p | 0.998 | 0.996 | 0.679 | 0.0 | |
| 359477643 | 1492 | PREDICTED: pleiotropic drug resistance p | 0.996 | 0.967 | 0.671 | 0.0 | |
| 224109722 | 1406 | predicted protein [Populus trichocarpa] | 0.968 | 0.997 | 0.677 | 0.0 | |
| 449445399 | 1440 | PREDICTED: pleiotropic drug resistance p | 0.989 | 0.995 | 0.675 | 0.0 |
| >gi|225450466|ref|XP_002280231.1| PREDICTED: pleiotropic drug resistance protein 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2295 bits (5947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1085/1450 (74%), Positives = 1272/1450 (87%), Gaps = 3/1450 (0%)
Query: 1 MAQMIGTDEIESVRIELAEIGRSLRSSFRLPTSSYRSSSAISSRKEDTDVEHALLWAEIE 60
MAQ++GTDEIES RIELAEIGRSLRSSFR TSS S+ +S K+D EH L W +IE
Sbjct: 1 MAQLVGTDEIESFRIELAEIGRSLRSSFRRHTSS--FRSSSASLKDDAVEEHDLQWTDIE 58
Query: 61 RLPTYDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFIEKLIKHIEHDNLQLLW 120
RLPT++RL++SLFD G+ VD +GK V+DVTK+GA ER +FIEKLIKHIE+DNL+LL
Sbjct: 59 RLPTFERLRSSLFDEYDDGSRVDGEGKRVVDVTKIGAPERRMFIEKLIKHIENDNLRLLQ 118
Query: 121 KIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSL 180
KIRKR+DKVG+KLPT+EVRYKNL VEA+CEVVHGKPLPTLWNS K + S KL G S
Sbjct: 119 KIRKRIDKVGVKLPTVEVRYKNLRVEAECEVVHGKPLPTLWNSLKSIPSDFTKLLGLGSH 178
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE 240
EA I+I+N VSG++KPGRMTLLLGPPGCGK++ L ALSGNLD SLKVTGEVSYNGY++EE
Sbjct: 179 EAHISIINGVSGVIKPGRMTLLLGPPGCGKTSLLLALSGNLDKSLKVTGEVSYNGYRMEE 238
Query: 241 FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI 300
FVP KTSAYISQ DLHI EMTVRET+DFSARCQGVGSR ETM EVSRREK+AGIVPDPDI
Sbjct: 239 FVPQKTSAYISQYDLHIPEMTVRETIDFSARCQGVGSRAETMSEVSRREKQAGIVPDPDI 298
Query: 301 DTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGP 360
DTYMKAISV+G+KRTLQTDYILKILGLD+CADTMVG+AMRRGISGGQKKRLTTGEMIVGP
Sbjct: 299 DTYMKAISVEGLKRTLQTDYILKILGLDICADTMVGDAMRRGISGGQKKRLTTGEMIVGP 358
Query: 361 TKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420
T+ALFMDEI+NGLDSST +QI+A ++QLVHI D+T L+SLLQPAPETFDLFDDIILMAEG
Sbjct: 359 TRALFMDEISNGLDSSTTFQIVAYLRQLVHIIDATILVSLLQPAPETFDLFDDIILMAEG 418
Query: 421 KIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMF 480
IVYHGP H+L FFEDCGFRCPERKGV+DFLQEV+SR+DQAQ+W HTE +SY SV F
Sbjct: 419 IIVYHGPCSHILEFFEDCGFRCPERKGVADFLQEVISRRDQAQYWYHTEQAHSYVSVHTF 478
Query: 481 SKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSF 540
S+KFKESP KKL+E+L P+DKS S KNA+SFS YSLS+WELF+ACMSRE LLM+RNSF
Sbjct: 479 SRKFKESPFGKKLEEKLSKPFDKSHSHKNALSFSKYSLSKWELFRACMSREFLLMKRNSF 538
Query: 541 VYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELSMTIQR 600
+YVFK+TQL+++A + MTVFLRTRM++D+ H NYY+GSL+++LV+LLVDG PELSMT+ R
Sbjct: 539 IYVFKSTQLVIIAAITMTVFLRTRMDVDIIHANYYLGSLFYALVILLVDGFPELSMTVSR 598
Query: 601 LEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFIL 660
L VFYKQ++LCFYPAWAY IPATILK+PLS V SL WT LTYYVIGYSPE RF RQFIL
Sbjct: 599 LPVFYKQRDLCFYPAWAYTIPATILKIPLSFVESLVWTSLTYYVIGYSPEFGRFLRQFIL 658
Query: 661 LFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWIS 720
F+ H +S+SMFRF ASV +T A+ TAGS IL V LFGGF+I +PSMP WLKW FWIS
Sbjct: 659 FFSVHLSSVSMFRFFASVSRTMVASATAGSFAILLVLLFGGFIIPQPSMPDWLKWAFWIS 718
Query: 721 PVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLL 780
P+TYGEIGL+VNEFLAPRWQK L TNTT+G+E LE+RGLNFDG++FWISL ALFG+ ++
Sbjct: 719 PMTYGEIGLAVNEFLAPRWQKTLSTNTTLGRETLENRGLNFDGYLFWISLAALFGVTIIF 778
Query: 781 NIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGE-PVKENSRSTPMTNKESYKGR 839
NIGFTLAL+FL++ G SR +ISHEKL+++Q + S+ G KE+ P T KE+ GR
Sbjct: 779 NIGFTLALSFLQAPGKSRAIISHEKLSQLQGRDQSTNGAYEEKESKNPPPKTTKEADIGR 838
Query: 840 MVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAG 899
MVLPF+PLTV+FQD++YYVDTP+EMR++GFA +KL LL+DVTGSLRPGVLTALMGVSGAG
Sbjct: 839 MVLPFQPLTVSFQDVQYYVDTPVEMRQKGFAQKKLHLLHDVTGSLRPGVLTALMGVSGAG 898
Query: 900 KTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSA 959
KTTLMDVLAGRKTSG +EGEI+I GYPKVQETFAR+SGYCEQTDIHSP IT+EESVIFSA
Sbjct: 899 KTTLMDVLAGRKTSGTIEGEIRIGGYPKVQETFARISGYCEQTDIHSPQITIEESVIFSA 958
Query: 960 WLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP 1019
WLRL+P+I+SKTKAEFVNEVLETIELD IKD+LVG+PGV GLSTEQRKRLTIAVELV+NP
Sbjct: 959 WLRLSPQIDSKTKAEFVNEVLETIELDGIKDALVGMPGVGGLSTEQRKRLTIAVELVSNP 1018
Query: 1020 SIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079
SIIFMDEPT+GLDARAAA+VMRAVKN+V+TGRTIVCTIHQPSIDIFEAFDELILLKTGG
Sbjct: 1019 SIIFMDEPTSGLDARAAAVVMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDELILLKTGGH 1078
Query: 1080 IIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQIFRES 1139
+IYCGPLG+HSS+VIEYFEGI GVPKIRNNYNPATW++EVTSTSAEAEL VDFAQI+++S
Sbjct: 1079 LIYCGPLGQHSSRVIEYFEGIPGVPKIRNNYNPATWMLEVTSTSAEAELGVDFAQIYKDS 1138
Query: 1140 VLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIM 1199
LYENN+ELVKQL+ PP GS+DLHFPTRF+RN W QFKSCLWK HLSYWRSPSYN+ R M
Sbjct: 1139 ALYENNKELVKQLSIPPHGSEDLHFPTRFARNGWSQFKSCLWKQHLSYWRSPSYNITRTM 1198
Query: 1200 HTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARERTVMY 1259
H ASLLFG+LFW G++L+NQQ +FN++GS Y+AV+FLGINNCS+V+P+V ERTV+Y
Sbjct: 1199 HMLVASLLFGILFWKQGKELNNQQGVFNVLGSMYVAVIFLGINNCSTVLPHVTNERTVLY 1258
Query: 1260 REGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFCTM 1319
RE FAGMYS WAY+LAQVT+EIPYL IQ L YVII YPMIGYY S YK+FW FY MFCT+
Sbjct: 1259 REKFAGMYSSWAYSLAQVTIEIPYLFIQTLIYVIITYPMIGYYSSVYKIFWYFYAMFCTL 1318
Query: 1320 MFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWA 1379
++YNYLGMLLV++TP+ +ASILSS YT+FNLFAGFLIP P++PKWW+W++Y+ PTSW+
Sbjct: 1319 LYYNYLGMLLVAMTPSFPVASILSSAFYTIFNLFAGFLIPQPQVPKWWLWLFYLTPTSWS 1378
Query: 1380 LNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAFLFAF 1439
+ M+TSQYGDI K+++VFGETK +++F++DY+GFHHDRL + A +LI +PL AFLF +
Sbjct: 1379 ITGMLTSQYGDIHKDILVFGETKTVATFLKDYYGFHHDRLAVVAVILIAFPLAFAFLFTY 1438
Query: 1440 CIERLNFLRR 1449
CI+RLNF RR
Sbjct: 1439 CIQRLNFQRR 1448
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089838|emb|CBI39657.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2250 bits (5830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1065/1450 (73%), Positives = 1245/1450 (85%), Gaps = 45/1450 (3%)
Query: 1 MAQMIGTDEIESVRIELAEIGRSLRSSFRLPTSSYRSSSAISSRKEDTDVEHALLWAEIE 60
MAQ++GTDEIES RIELAEIGRSLRSSFR TSS+RS
Sbjct: 1 MAQLVGTDEIESFRIELAEIGRSLRSSFRRHTSSFRS----------------------- 37
Query: 61 RLPTYDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFIEKLIKHIEHDNLQLLW 120
+D +GK V+DVTK+GA ER +FIEKLIKHIE+DNL+LL
Sbjct: 38 ---------------------IDGEGKRVVDVTKIGAPERRMFIEKLIKHIENDNLRLLQ 76
Query: 121 KIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSL 180
KIRKR+DKVG+KLPT+EVRYKNL VEA+CEVVHGKPLPTLWNS K + S KL G S
Sbjct: 77 KIRKRIDKVGVKLPTVEVRYKNLRVEAECEVVHGKPLPTLWNSLKSIPSDFTKLLGLGSH 136
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE 240
EA I+I+N VSG++KPGRMTLLLGPPGCGK++ L ALSGNLD SLKVTGEVSYNGY++EE
Sbjct: 137 EAHISIINGVSGVIKPGRMTLLLGPPGCGKTSLLLALSGNLDKSLKVTGEVSYNGYRMEE 196
Query: 241 FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI 300
FVP KTSAYISQ DLHI EMTVRET+DFSARCQGVGSR ETM EVSRREK+AGIVPDPDI
Sbjct: 197 FVPQKTSAYISQYDLHIPEMTVRETIDFSARCQGVGSRAETMSEVSRREKQAGIVPDPDI 256
Query: 301 DTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGP 360
DTYMKAISV+G+KRTLQTDYILKILGLD+CADTMVG+AMRRGISGGQKKRLTTGEMIVGP
Sbjct: 257 DTYMKAISVEGLKRTLQTDYILKILGLDICADTMVGDAMRRGISGGQKKRLTTGEMIVGP 316
Query: 361 TKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420
T+ALFMDEI+NGLDSST +QI+A ++QLVHI D+T L+SLLQPAPETFDLFDDIILMAEG
Sbjct: 317 TRALFMDEISNGLDSSTTFQIVAYLRQLVHIIDATILVSLLQPAPETFDLFDDIILMAEG 376
Query: 421 KIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMF 480
IVYHGP H+L FFEDCGFRCPERKGV+DFLQEV+SR+DQAQ+W HTE +SY SV F
Sbjct: 377 IIVYHGPCSHILEFFEDCGFRCPERKGVADFLQEVISRRDQAQYWYHTEQAHSYVSVHTF 436
Query: 481 SKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSF 540
S+KFKESP KKL+E+L P+DKS S KNA+SFS YSLS+WELF+ACMSRE LLM+RNSF
Sbjct: 437 SRKFKESPFGKKLEEKLSKPFDKSHSHKNALSFSKYSLSKWELFRACMSREFLLMKRNSF 496
Query: 541 VYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELSMTIQR 600
+YVFK+TQL+++A + MTVFLRTRM++D+ H NYY+GSL+++LV+LLVDG PELSMT+ R
Sbjct: 497 IYVFKSTQLVIIAAITMTVFLRTRMDVDIIHANYYLGSLFYALVILLVDGFPELSMTVSR 556
Query: 601 LEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFIL 660
L VFYKQ++LCFYPAWAY IPATILK+PLS V SL WT LTYYVIGYSPE RF RQFIL
Sbjct: 557 LPVFYKQRDLCFYPAWAYTIPATILKIPLSFVESLVWTSLTYYVIGYSPEFGRFLRQFIL 616
Query: 661 LFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWIS 720
F+ H +S+SMFRF ASV +T A+ TAGS IL V LFGGF+I +PSMP WLKW FWIS
Sbjct: 617 FFSVHLSSVSMFRFFASVSRTMVASATAGSFAILLVLLFGGFIIPQPSMPDWLKWAFWIS 676
Query: 721 PVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLL 780
P+TYGEIGL+VNEFLAPRWQK L TNTT+G+E LE+RGLNFDG++FWISL ALFG+ ++
Sbjct: 677 PMTYGEIGLAVNEFLAPRWQKTLSTNTTLGRETLENRGLNFDGYLFWISLAALFGVTIIF 736
Query: 781 NIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGE-PVKENSRSTPMTNKESYKGR 839
NIGFTLAL+FL++ G SR +ISHEKL+++Q + S+ G KE+ P T KE+ GR
Sbjct: 737 NIGFTLALSFLQAPGKSRAIISHEKLSQLQGRDQSTNGAYEEKESKNPPPKTTKEADIGR 796
Query: 840 MVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAG 899
MVLPF+PLTV+FQD++YYVDTP+EMR++GFA +KL LL+DVTGSLRPGVLTALMGVSGAG
Sbjct: 797 MVLPFQPLTVSFQDVQYYVDTPVEMRQKGFAQKKLHLLHDVTGSLRPGVLTALMGVSGAG 856
Query: 900 KTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSA 959
KTTLMDVLAGRKTSG +EGEI+I GYPKVQETFAR+SGYCEQTDIHSP IT+EESVIFSA
Sbjct: 857 KTTLMDVLAGRKTSGTIEGEIRIGGYPKVQETFARISGYCEQTDIHSPQITIEESVIFSA 916
Query: 960 WLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP 1019
WLRL+P+I+SKTKAEFVNEVLETIELD IKD+LVG+PGV GLSTEQRKRLTIAVELV+NP
Sbjct: 917 WLRLSPQIDSKTKAEFVNEVLETIELDGIKDALVGMPGVGGLSTEQRKRLTIAVELVSNP 976
Query: 1020 SIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079
SIIFMDEPT+GLDARAAA+VMRAVKN+V+TGRTIVCTIHQPSIDIFEAFDELILLKTGG
Sbjct: 977 SIIFMDEPTSGLDARAAAVVMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDELILLKTGGH 1036
Query: 1080 IIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQIFRES 1139
+IYCGPLG+HSS+VIEYFEGI GVPKIRNNYNPATW++EVTSTSAEAEL VDFAQI+++S
Sbjct: 1037 LIYCGPLGQHSSRVIEYFEGIPGVPKIRNNYNPATWMLEVTSTSAEAELGVDFAQIYKDS 1096
Query: 1140 VLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIM 1199
LYENN+ELVKQL+ PP GS+DLHFPTRF+RN W QFKSCLWK HLSYWRSPSYN+ R M
Sbjct: 1097 ALYENNKELVKQLSIPPHGSEDLHFPTRFARNGWSQFKSCLWKQHLSYWRSPSYNITRTM 1156
Query: 1200 HTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARERTVMY 1259
H ASLLFG+LFW G++L+NQQ +FN++GS Y+AV+FLGINNCS+V+P+V ERTV+Y
Sbjct: 1157 HMLVASLLFGILFWKQGKELNNQQGVFNVLGSMYVAVIFLGINNCSTVLPHVTNERTVLY 1216
Query: 1260 REGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFCTM 1319
RE FAGMYS WAY+LAQVT+EIPYL IQ L YVII YPMIGYY S YK+FW FY MFCT+
Sbjct: 1217 REKFAGMYSSWAYSLAQVTIEIPYLFIQTLIYVIITYPMIGYYSSVYKIFWYFYAMFCTL 1276
Query: 1320 MFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWA 1379
++YNYLGMLLV++TP+ +ASILSS YT+FNLFAGFLIP P++PKWW+W++Y+ PTSW+
Sbjct: 1277 LYYNYLGMLLVAMTPSFPVASILSSAFYTIFNLFAGFLIPQPQVPKWWLWLFYLTPTSWS 1336
Query: 1380 LNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAFLFAF 1439
+ M+TSQYGDI K+++VFGETK +++F++DY+GFHHDRL + A +LI +PL AFLF +
Sbjct: 1337 ITGMLTSQYGDIHKDILVFGETKTVATFLKDYYGFHHDRLAVVAVILIAFPLAFAFLFTY 1396
Query: 1440 CIERLNFLRR 1449
CI+RLNF RR
Sbjct: 1397 CIQRLNFQRR 1406
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147780242|emb|CAN65735.1| hypothetical protein VITISV_037751 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2224 bits (5763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1059/1449 (73%), Positives = 1244/1449 (85%), Gaps = 32/1449 (2%)
Query: 1 MAQMIGTDEIESVRIELAEIGRSLRSSFRLPTSSYRSSSAISSRKEDTDVEHALLWAEIE 60
MAQ++GTDEIES RIEL EIGRSLRSSFR TSS S+ +S K+D E+ L W EIE
Sbjct: 1 MAQLVGTDEIESFRIELTEIGRSLRSSFRRHTSS--FRSSSASLKDDAVEENDLQWTEIE 58
Query: 61 RLPTYDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFIEKLIKHIEHDNLQLLW 120
RLPT++RL++SLFD G++VD +GK V+DVTK+GA ER +FIEKLIKH E+DNL+LL
Sbjct: 59 RLPTFERLRSSLFDEYDDGSVVDGEGKRVVDVTKIGAPERRMFIEKLIKHTENDNLRLLQ 118
Query: 121 KIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSL 180
KIRKR DKVG+KLPT+EVRYKNL VEA+CEVVHGKPLPTLWNS K + S KL G S
Sbjct: 119 KIRKRTDKVGVKLPTVEVRYKNLRVEAECEVVHGKPLPTLWNSLKSIPSDFTKLLGLGSH 178
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE 240
EA I+I+N VSG++KPGRMTLLLGPPGCGK++ L ALSGNLD SLKVTGEVSYNGYK+EE
Sbjct: 179 EAHISIINGVSGVIKPGRMTLLLGPPGCGKTSLLLALSGNLDKSLKVTGEVSYNGYKMEE 238
Query: 241 FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI 300
FVP KTSAYISQ DLHI EMTVRET+DFSARCQGVGSR ETM+EVSRREK+AGIVPDPDI
Sbjct: 239 FVPQKTSAYISQYDLHIPEMTVRETIDFSARCQGVGSRAETMLEVSRREKQAGIVPDPDI 298
Query: 301 DTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGP 360
DTYMKAISV+G+KRTLQTDYILKILGLD+CADTMVG+AMRRGISGG P
Sbjct: 299 DTYMKAISVEGLKRTLQTDYILKILGLDICADTMVGDAMRRGISGG-------------P 345
Query: 361 TKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420
T+ALFMDEI+NGLDSST +QI+A ++QLVHI D+T L+SLLQPAPETFDLFDDIILMAEG
Sbjct: 346 TRALFMDEISNGLDSSTTFQIVAYLRQLVHIIDATILVSLLQPAPETFDLFDDIILMAEG 405
Query: 421 KIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMF 480
IVYHGP H+L FFEDCGFRCPERKGV+DFLQEV+SR+DQAQ+W HTE +SY SV F
Sbjct: 406 IIVYHGPCSHILEFFEDCGFRCPERKGVADFLQEVISRRDQAQYWYHTEQAHSYVSVHTF 465
Query: 481 SKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSF 540
S+KFKESP KKL+E+L P+DKS S KNA+SFS YSLS+WELF+ACMSRE LLM+RNSF
Sbjct: 466 SRKFKESPFGKKLEEKLSKPFDKSHSHKNALSFSKYSLSKWELFRACMSREFLLMKRNSF 525
Query: 541 VYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELSMTIQR 600
+YVFK+TQL+++A + MTVFLRTRM++D+ H NYY+GSL+++LV+LLVDG PELSMT+ R
Sbjct: 526 IYVFKSTQLVIIAAITMTVFLRTRMDVDIIHANYYLGSLFYALVILLVDGFPELSMTVSR 585
Query: 601 LEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFIL 660
L VFYKQ++LCFYPAWAY IPATILK+PLS V SL WT LTYYVIGYSPE RF RQFIL
Sbjct: 586 LPVFYKQRDLCFYPAWAYTIPATILKIPLSFVESLVWTSLTYYVIGYSPEFGRFLRQFIL 645
Query: 661 LFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWIS 720
FA H +S+SMFRF ASV +T A+ TAGS IL V LFGGF+I +PSMP WLKW FWIS
Sbjct: 646 FFAVHLSSVSMFRFFASVSRTMVASATAGSFAILLVLLFGGFIIPQPSMPDWLKWAFWIS 705
Query: 721 PVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLL 780
P+TYGEIGL+VNEFLAPRWQK L TNTT+G+E LE+RGLNFDG+ FWISL ALFG+ ++
Sbjct: 706 PMTYGEIGLAVNEFLAPRWQKTLSTNTTLGRETLENRGLNFDGYFFWISLAALFGVTIIF 765
Query: 781 NIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKESYKGRM 840
NIGFTLAL+FL+ +S + +Y E +E+ P T KE+ GRM
Sbjct: 766 NIGFTLALSFLQGR---------------DQSTNGAYEE--EESKNPPPKTTKEADIGRM 808
Query: 841 VLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGK 900
VLPF+PLTV+FQD++YYVDTP+EMR++GFA +KL+LL+D+TGSLRPGVLTALMGVSGAGK
Sbjct: 809 VLPFQPLTVSFQDVQYYVDTPVEMRQKGFAQKKLQLLHDITGSLRPGVLTALMGVSGAGK 868
Query: 901 TTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAW 960
TTLMDVLAGRKTSG +EGEI+I GYPKVQETFAR+SGYCEQTDIHSP IT+EESVIFSAW
Sbjct: 869 TTLMDVLAGRKTSGTIEGEIRIGGYPKVQETFARISGYCEQTDIHSPQITIEESVIFSAW 928
Query: 961 LRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS 1020
LRL+P+I+SKTKAEFVNEVLETIELD IKD+LVG+PGV GLSTEQRKRLTIAVELV+NPS
Sbjct: 929 LRLSPQIDSKTKAEFVNEVLETIELDGIKDALVGMPGVGGLSTEQRKRLTIAVELVSNPS 988
Query: 1021 IIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080
IIFMDEPT+GLDARAAA+VMRAVKN+V+TGRTIVCTIHQPSIDIFEAFDELILLKTGG +
Sbjct: 989 IIFMDEPTSGLDARAAAVVMRAVKNVVDTGRTIVCTIHQPSIDIFEAFDELILLKTGGHL 1048
Query: 1081 IYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQIFRESV 1140
IYCGPLG+HSS+VIEYFEGI GVPKIRNNYNPATW++EVTS SAEAEL +DFAQI+++S
Sbjct: 1049 IYCGPLGQHSSRVIEYFEGIPGVPKIRNNYNPATWMLEVTSASAEAELGIDFAQIYKDSA 1108
Query: 1141 LYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIMH 1200
LYENN+ELVKQL+ PP GS+DLHFPTRF+RN W QFKSCLWK HLSYWRSPSYN+ R MH
Sbjct: 1109 LYENNKELVKQLSIPPHGSEDLHFPTRFARNGWSQFKSCLWKQHLSYWRSPSYNITRTMH 1168
Query: 1201 TATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARERTVMYR 1260
ASLLFG+LFW G++L+NQQ +FN++GS Y+AV+FLGINNCS+V+P+V ERTV+YR
Sbjct: 1169 MLVASLLFGILFWKQGKELNNQQGVFNVLGSMYVAVIFLGINNCSTVLPHVTNERTVLYR 1228
Query: 1261 EGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFCTMM 1320
E FAGMYS WAY+LAQVT+EIPYL IQ L YVII YPMIGYY S YK+FW FY MFCT++
Sbjct: 1229 EKFAGMYSSWAYSLAQVTIEIPYLFIQTLIYVIITYPMIGYYSSVYKIFWYFYAMFCTLL 1288
Query: 1321 FYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWAL 1380
+YNYLGMLLV++TP+ +ASILSS YT+FNLFAGFLIP P++PKWW+W++Y+ PTSW++
Sbjct: 1289 YYNYLGMLLVAMTPSFPVASILSSAFYTIFNLFAGFLIPQPQVPKWWLWLFYLTPTSWSI 1348
Query: 1381 NAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAFLFAFC 1440
M+TSQYGDI K+++VFGETK +++F++DY+GFHHDRL + A +LI +PL AFLF +C
Sbjct: 1349 TGMLTSQYGDIHKDILVFGETKTVAAFLKDYYGFHHDRLAVVAVILIAFPLAFAFLFTYC 1408
Query: 1441 IERLNFLRR 1449
I+RLNF RR
Sbjct: 1409 IQRLNFQRR 1417
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75321780|sp|Q5W274.1|PDR3_TOBAC RecName: Full=Pleiotropic drug resistance protein 3; AltName: Full=NtPDR3 gi|55056942|emb|CAH39853.1| PDR-like ABC transporter [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 2215 bits (5740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1037/1451 (71%), Positives = 1245/1451 (85%), Gaps = 6/1451 (0%)
Query: 1 MAQMIGTDEIESVRIELAEIGRSLRSSFRLPTSSYRSSSAISSRKED--TDVEHALLWAE 58
MAQ++G+DEIES R++LAEIGRSLRSSFR +SS+RS+SA+S+ ++D D E+ L WA
Sbjct: 1 MAQLVGSDEIESFRMDLAEIGRSLRSSFRGQSSSFRSNSALSASQKDDAVDEENMLAWAA 60
Query: 59 IERLPTYDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFIEKLIKHIEHDNLQL 118
IERLPT+DRL++SLF+ +GN + + K V DVTKLGALERHVFIEK+IKHIEHDNLQL
Sbjct: 61 IERLPTFDRLRSSLFE-EINGNDANVKRKRVTDVTKLGALERHVFIEKMIKHIEHDNLQL 119
Query: 119 LWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYK 178
L KIRKR+DKVG++LPT+EVRYKNL +EA+CE+VHGKPLPTLWNS K + L +L G +
Sbjct: 120 LHKIRKRIDKVGVELPTVEVRYKNLTIEAECELVHGKPLPTLWNSLKSITMNLARLPGLQ 179
Query: 179 SLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKL 238
S AKI ILN VSG++KPGRMTLLLGPPGCGK++ LKALSGNLD SLKV+GE+SYNGYKL
Sbjct: 180 SELAKIKILNDVSGVIKPGRMTLLLGPPGCGKTSLLKALSGNLDKSLKVSGEISYNGYKL 239
Query: 239 EEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDP 298
EEFVP KTSAY+SQNDLHI EMTVRET+D+S+R QGVGSR E M ++SRREKEAG+VPDP
Sbjct: 240 EEFVPQKTSAYVSQNDLHIPEMTVRETLDYSSRFQGVGSRAEIMTDLSRREKEAGVVPDP 299
Query: 299 DIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIV 358
DIDTYMKAIS++G K+ LQTDYILKILGLD+CADT+VG+AMRRGISGGQKKRLTTGE+IV
Sbjct: 300 DIDTYMKAISIEGQKKNLQTDYILKILGLDICADTLVGDAMRRGISGGQKKRLTTGELIV 359
Query: 359 GPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418
GP KALFMDEI+NGLDSST YQI+AC+QQL HITD+T L+SLLQPAPETFDLFDDIILMA
Sbjct: 360 GPIKALFMDEISNGLDSSTTYQIVACLQQLAHITDATILVSLLQPAPETFDLFDDIILMA 419
Query: 419 EGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVD 478
EGKI+YHGP++ L FFE CGF+CPERKGV+DFLQEV S+KDQAQ+W T+ Y + SVD
Sbjct: 420 EGKILYHGPRNSALEFFESCGFKCPERKGVADFLQEVTSKKDQAQYWHGTKETYKFVSVD 479
Query: 479 MFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRN 538
M S+KFKESP KKL+EEL VPYD S+S +N+I+F YSL +WELF+ACMSRE LLM+RN
Sbjct: 480 MLSRKFKESPYRKKLNEELSVPYDNSRSHRNSITFRDYSLPKWELFRACMSREFLLMKRN 539
Query: 539 SFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELSMTI 598
SF+Y+FKT QL ++A++ MTVFLRTRM+ D+ H NYY+G+L+++L++LLVDG PELSMTI
Sbjct: 540 SFIYIFKTVQLAIIASITMTVFLRTRMDTDLVHANYYLGALFYALIILLVDGFPELSMTI 599
Query: 599 QRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQF 658
RL VFYKQ ELCFYPAWAY IPATILK+PLSL+ S+ W +TYYVIG+SPE RFFRQ
Sbjct: 600 TRLAVFYKQSELCFYPAWAYTIPATILKIPLSLLESVIWASMTYYVIGFSPEAGRFFRQL 659
Query: 659 ILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFW 718
+LLFA H TSISMFRF+ASV +T A+ AG + ILFV F GF+I RPSMP WLKWGFW
Sbjct: 660 LLLFAVHMTSISMFRFLASVCRTIVASTAAGGLSILFVLCFSGFIIPRPSMPIWLKWGFW 719
Query: 719 ISPVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIAL 778
ISP+TYGEIGL+VNEFLAPRWQK LPTNT+IG E+LESRGLNFDG+ +WIS+ ALFG +
Sbjct: 720 ISPLTYGEIGLAVNEFLAPRWQKTLPTNTSIGNEVLESRGLNFDGYFYWISVCALFGFTI 779
Query: 779 LLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKESYKG 838
L NIGFTLALTFLK+ G SR +IS +K ++++ S DS ENS++T +++ + G
Sbjct: 780 LFNIGFTLALTFLKAPG-SRAIISTDKYSQIEGSSDSIDKADAAENSKATMDSHERA--G 836
Query: 839 RMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGA 898
RMVLPFEPL++ FQD++YYVDTP M E GF ++L+LL D+TG+LRPG+LTALMGVSGA
Sbjct: 837 RMVLPFEPLSLVFQDVQYYVDTPAAMTELGFTQKRLQLLSDITGALRPGILTALMGVSGA 896
Query: 899 GKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFS 958
GKTTL+DVLAGRKT+GYVEGEIK+ GYPKVQETFARVSGYCEQTDIHSP ITVEESVIFS
Sbjct: 897 GKTTLLDVLAGRKTTGYVEGEIKVGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFS 956
Query: 959 AWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVAN 1018
AWLRL P+I+SKTK EFV EV+ETIELD IK LVG+PGV+GLSTEQRKRLTIAVELVAN
Sbjct: 957 AWLRLHPQIDSKTKYEFVKEVIETIELDGIKGMLVGMPGVSGLSTEQRKRLTIAVELVAN 1016
Query: 1019 PSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGG 1078
PSIIFMDEPTTGLDAR+AAIVMRAVKN+ +TGRTIVCTIHQPSIDIFEAFDELILLKTGG
Sbjct: 1017 PSIIFMDEPTTGLDARSAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELILLKTGG 1076
Query: 1079 RIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQIFRE 1138
R+IY G LG++S ++IEYFEGIS VPKI+NN+NPATW++EVTSTS+EA++ +DFA++++
Sbjct: 1077 RMIYWGHLGRNSCKMIEYFEGISCVPKIKNNHNPATWMLEVTSTSSEADISIDFAEVYKN 1136
Query: 1139 SVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRI 1198
S L++NN ELVK+L+ PP GSKDLHFPTRFS+N WGQFK+C WK + SYWRSPSYNLMR
Sbjct: 1137 SALHKNNEELVKKLSFPPAGSKDLHFPTRFSQNGWGQFKTCFWKQYWSYWRSPSYNLMRS 1196
Query: 1199 MHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARERTVM 1258
+H ASL+ G+LFWD G+KLDNQQ +F++ G+ + AV+F GINN SSV+P V ER+V+
Sbjct: 1197 LHMLFASLVSGLLFWDKGKKLDNQQSVFSVFGAMFTAVIFCGINNSSSVLPYVTTERSVL 1256
Query: 1259 YREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFCT 1318
YRE FAGMY+ WAYALAQV +EIPYLL QAL++ +I YPMIGYYWSAYK+FW FY MFCT
Sbjct: 1257 YRERFAGMYASWAYALAQVAIEIPYLLAQALAFTVITYPMIGYYWSAYKVFWYFYSMFCT 1316
Query: 1319 MMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSW 1378
++++ YLGM+LVS+TP+ +A+IL S YT+FNLFAGFL+P +IPKWWIW YY+ PTSW
Sbjct: 1317 LLYFTYLGMMLVSMTPSFPVAAILQSSFYTMFNLFAGFLMPKAQIPKWWIWFYYLTPTSW 1376
Query: 1379 ALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAFLFA 1438
LN M+TSQYGDI+KE+ VF E K +++F+ DYFGFHH++LPI A VLI YPLV A LFA
Sbjct: 1377 TLNGMLTSQYGDIEKEITVFQEKKTVAAFLGDYFGFHHNQLPIVAFVLIAYPLVFASLFA 1436
Query: 1439 FCIERLNFLRR 1449
F I +LNF RR
Sbjct: 1437 FFIGKLNFQRR 1447
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816648|ref|XP_002876207.1| ATPDR9/PDR9 [Arabidopsis lyrata subsp. lyrata] gi|297322045|gb|EFH52466.1| ATPDR9/PDR9 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2114 bits (5477), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 989/1454 (68%), Positives = 1221/1454 (83%), Gaps = 9/1454 (0%)
Query: 1 MAQMIGTDEIESVRIELAEIGRSLRSSFRLPTSSYRSSSAISSRKEDTDV-----EHALL 55
MA M+G DEIES+R+ELAEIGRS+RSSFR TSS+RSSS+ + D DV E+AL
Sbjct: 1 MAHMVGADEIESLRVELAEIGRSIRSSFRRHTSSFRSSSSRYELENDGDVIDHDAEYALQ 60
Query: 56 WAEIERLPTYDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFIEKLIKHIEHDN 115
WAEIERLPT R++++L D + +G+ V+DVTKLGA+ERH+ IEKLIKHIE+DN
Sbjct: 61 WAEIERLPTVKRMRSTLLDDGDES--MSEKGRRVVDVTKLGAMERHLMIEKLIKHIENDN 118
Query: 116 LQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLS 175
L+LL KIRKR+D+VG++LPTIEVRY++L VEA+CE+V GK LPTLWN+ K ++S L KL+
Sbjct: 119 LKLLKKIRKRIDRVGMELPTIEVRYESLKVEAECEIVEGKALPTLWNTAKRVLSELVKLT 178
Query: 176 GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG 235
G K+ EAKINI+N V+G++KPGR+TLLLGPPGCGK+T LKALSGNL+ +LK +GE+SYNG
Sbjct: 179 GAKTHEAKINIINDVNGVIKPGRLTLLLGPPGCGKTTLLKALSGNLENNLKCSGEISYNG 238
Query: 236 YKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIV 295
++L+EFVP KTSAYISQ DLHIAEMTVRETVDFSARCQGVGSR + MMEVS+REKE GI+
Sbjct: 239 HRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSKREKEKGII 298
Query: 296 PDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGE 355
PD ++D YMKAISV+G++R LQTDYILKILGLD+CA+T++G+ MRRGISGGQKKRLTT E
Sbjct: 299 PDTEVDAYMKAISVEGLQRNLQTDYILKILGLDICAETLIGDVMRRGISGGQKKRLTTAE 358
Query: 356 MIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415
MIVGPTKALFMDEITNGLDSSTA+QI+ +QQ HI+ +T L+SLLQPAPE+FDLFDDI+
Sbjct: 359 MIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPESFDLFDDIM 418
Query: 416 LMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYF 475
LMA+G+I+YHGP+ VL FFEDCGFRCPERKGV+DFLQEV+S+KDQAQ+W H +LPYS+
Sbjct: 419 LMAKGRIMYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWRHEDLPYSFV 478
Query: 476 SVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLM 535
SVDM SKKFKE + KK++ L PYD+SKS K+A+SFSVYSL WELF AC+SRE LLM
Sbjct: 479 SVDMLSKKFKELSIGKKMEHTLSKPYDRSKSHKDALSFSVYSLPNWELFIACISREYLLM 538
Query: 536 RRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELS 595
+RN FVY+FKT+QL+M A + MTV++RTRM ID+ HGN YM +L+F+L++LLVDG PELS
Sbjct: 539 KRNYFVYIFKTSQLVMAAFITMTVYIRTRMGIDIIHGNSYMSALFFALIILLVDGFPELS 598
Query: 596 MTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFF 655
MT QRL VFYKQ++LCFYPAWAYAIPAT+LKVPLS SL WT LTYYVIGY+PE RFF
Sbjct: 599 MTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTGLTYYVIGYTPEASRFF 658
Query: 656 RQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKW 715
+QFILLFA HFTSISMFR +A++FQT A++TAGS ILF F+F GFVI PSMPAWLKW
Sbjct: 659 KQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKW 718
Query: 716 GFWISPVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFG 775
GFW++P++YGEIGLSVNEFLAPRW +M P N T+G+ IL++RG+++DG+++W+SL AL G
Sbjct: 719 GFWVNPLSYGEIGLSVNEFLAPRWNQMQPNNVTLGRTILQTRGMDYDGYMYWVSLYALLG 778
Query: 776 IALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKES 835
+L NI FTLALTFLKS SSR MIS +KL+++Q +E+S+ VK+ + +P+ +E
Sbjct: 779 FTVLFNIIFTLALTFLKSPTSSRAMISQDKLSELQGTENSTDDSSVKKKTTDSPVKTEE- 837
Query: 836 YKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGV 895
+G MVLPF+PLTV FQDLKY+VD P+EMR++G+ +KL+LL D+TG+ RPG+LTALMGV
Sbjct: 838 -EGNMVLPFKPLTVTFQDLKYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGV 896
Query: 896 SGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESV 955
SGAGKTTL+DVLAGRKTSGY+EG+I+ISG+PK+QETFARVSGYCEQTDIHSPNITVEESV
Sbjct: 897 SGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKIQETFARVSGYCEQTDIHSPNITVEESV 956
Query: 956 IFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVEL 1015
I+SAWLRLAPEI+S TK +FV +VLETIELD IKDSLVG+ GV+GLSTEQRKRLTIAVEL
Sbjct: 957 IYSAWLRLAPEIDSATKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVEL 1016
Query: 1016 VANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075
VANPSIIFMDEPTTGLDARAAAIVMRAVKN+ +TGRTIVCTIHQPSIDIFEAFDEL+LLK
Sbjct: 1017 VANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLK 1076
Query: 1076 TGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQI 1135
GGR+IY GPLG+HS +IEYFE + +PKI++N+NPATW+++V+S S E EL VDFA+I
Sbjct: 1077 RGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVSSQSVEVELGVDFAKI 1136
Query: 1136 FRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNL 1195
+ +S LY+ N ELVKQL+ P GS D+ F F++++WGQF+S LWK++LSYWRSPSYNL
Sbjct: 1137 YHDSALYKRNAELVKQLSQPDSGSSDIQFKRTFAQSWWGQFRSILWKMNLSYWRSPSYNL 1196
Query: 1196 MRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARER 1255
MR++HT +SL+FG LFW GQ +D QQ +F + G+ Y V+FLGINNCSS I + ER
Sbjct: 1197 MRMIHTLVSSLIFGSLFWKQGQNIDTQQGMFTVFGAIYGLVLFLGINNCSSAIQYIETER 1256
Query: 1256 TVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGM 1315
VMYRE FAGMYS AYAL QV EIPY+ IQA +VII YPMIG+Y S YK+FW+ Y M
Sbjct: 1257 NVMYRERFAGMYSATAYALGQVVTEIPYIFIQAAEFVIITYPMIGFYPSTYKVFWSLYSM 1316
Query: 1316 FCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMP 1375
FC+++ +NYL M LVS+TPN M+A+IL S+ Y FNLF+GFLIP ++P WWIW+YY+ P
Sbjct: 1317 FCSLLTFNYLAMFLVSITPNFMVAAILQSLFYVNFNLFSGFLIPQTQVPGWWIWLYYLTP 1376
Query: 1376 TSWALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAF 1435
TSW LN +SQYGDID+++ VFGE+ ++ F++DYFGFHHDRL +TA V I +P+ LA
Sbjct: 1377 TSWTLNGFFSSQYGDIDEKINVFGESTTVARFLKDYFGFHHDRLAVTAVVQIAFPIALAS 1436
Query: 1436 LFAFCIERLNFLRR 1449
+FAF + +LNF RR
Sbjct: 1437 MFAFFVGKLNFQRR 1450
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231821|ref|NP_190916.1| ABC transporter G family member 37 [Arabidopsis thaliana] gi|75334941|sp|Q9LFH0.1|AB37G_ARATH RecName: Full=ABC transporter G family member 37; Short=ABC transporter ABCG.37; Short=AtABCG37; AltName: Full=Probable pleiotropic drug resistance protein 9 gi|6729499|emb|CAB67655.1| ABC transporter-like protein [Arabidopsis thaliana] gi|28144337|tpg|DAA00877.1| TPA_exp: PDR9 ABC transporter [Arabidopsis thaliana] gi|332645574|gb|AEE79095.1| ABC transporter G family member 37 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2102 bits (5445), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 981/1454 (67%), Positives = 1217/1454 (83%), Gaps = 9/1454 (0%)
Query: 1 MAQMIGTDEIESVRIELAEIGRSLRSSFRLPTSSYRSSSAISSRKEDTDV-----EHALL 55
MA M+G D+IES+R+ELAEIGRS+RSSFR TSS+RSSS+I + D DV E+AL
Sbjct: 1 MAHMVGADDIESLRVELAEIGRSIRSSFRRHTSSFRSSSSIYEVENDGDVNDHDAEYALQ 60
Query: 56 WAEIERLPTYDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFIEKLIKHIEHDN 115
WAEIERLPT R++++L D + +G+ V+DVTKLGA+ERH+ IEKLIKHIE+DN
Sbjct: 61 WAEIERLPTVKRMRSTLLDDGDES--MTEKGRRVVDVTKLGAVERHLMIEKLIKHIENDN 118
Query: 116 LQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLS 175
L+LL KIR+R+D+VG++LPTIEVRY++L V A+CEVV GK LPTLWN+ K ++S L KL+
Sbjct: 119 LKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTLWNTAKRVLSELVKLT 178
Query: 176 GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG 235
G K+ EAKINI+N V+GI+KPGR+TLLLGPP CGK+T LKALSGNL+ +LK +GE+SYNG
Sbjct: 179 GAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLKCSGEISYNG 238
Query: 236 YKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIV 295
++L+EFVP KTSAYISQ DLHIAEMTVRETVDFSARCQGVGSR + MMEVS+REKE GI+
Sbjct: 239 HRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSKREKEKGII 298
Query: 296 PDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGE 355
PD ++D YMKAISV+G++R+LQTDYILKILGLD+CA+ ++G+ MRRGISGGQKKRLTT E
Sbjct: 299 PDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQKKRLTTAE 358
Query: 356 MIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415
MIVGPTKALFMDEITNGLDSSTA+QI+ +QQ HI+ +T L+SLLQPAPE++DLFDDI+
Sbjct: 359 MIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPESYDLFDDIM 418
Query: 416 LMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYF 475
LMA+G+IVYHGP+ VL FFEDCGFRCPERKGV+DFLQEV+S+KDQAQ+W H +LPYS+
Sbjct: 419 LMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWWHEDLPYSFV 478
Query: 476 SVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLM 535
SV+M SKKFK+ + KK+++ L PYD+SKS K+A+SFSVYSL WELF AC+SRE LLM
Sbjct: 479 SVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIACISREYLLM 538
Query: 536 RRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELS 595
+RN FVY+FKT QL+M A + MTVF+RTRM ID+ HGN YM +L+F+L++LLVDG PELS
Sbjct: 539 KRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIHGNSYMSALFFALIILLVDGFPELS 598
Query: 596 MTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFF 655
MT QRL VFYKQ++LCFYPAWAYAIPAT+LKVPLS SL WTCL+YYVIGY+PE RFF
Sbjct: 599 MTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFF 658
Query: 656 RQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKW 715
+QFILLFA HFTSISMFR +A++FQT A++TAGS ILF F+F GFVI PSMPAWLKW
Sbjct: 659 KQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKW 718
Query: 716 GFWISPVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFG 775
GFW +P++YGEIGLSVNEFLAPRW +M P N T+G+ IL++RG++++G+++W+SL AL G
Sbjct: 719 GFWANPLSYGEIGLSVNEFLAPRWNQMQPNNFTLGRTILQTRGMDYNGYMYWVSLCALLG 778
Query: 776 IALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKES 835
+L NI FTLALTFLKS SSR MIS +KL+++Q +E S+ V++ + +P+ +E
Sbjct: 779 FTVLFNIIFTLALTFLKSPTSSRAMISQDKLSELQGTEKSTEDSSVRKKTTDSPVKTEE- 837
Query: 836 YKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGV 895
+ +MVLPF+PLTV FQDL Y+VD P+EMR++G+ +KL+LL D+TG+ RPG+LTALMGV
Sbjct: 838 -EDKMVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGV 896
Query: 896 SGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESV 955
SGAGKTTL+DVLAGRKTSGY+EG+I+ISG+PKVQETFARVSGYCEQTDIHSPNITVEESV
Sbjct: 897 SGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESV 956
Query: 956 IFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVEL 1015
I+SAWLRLAPEI++ TK +FV +VLETIELD IKDSLVG+ GV+GLSTEQRKRLTIAVEL
Sbjct: 957 IYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVEL 1016
Query: 1016 VANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075
VANPSIIFMDEPTTGLDARAAAIVMRAVKN+ +TGRTIVCTIHQPSIDIFEAFDEL+LLK
Sbjct: 1017 VANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLK 1076
Query: 1076 TGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQI 1135
GGR+IY GPLG+HS +IEYFE + +PKI++N+NPATW+++V+S S E EL VDFA+I
Sbjct: 1077 RGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKI 1136
Query: 1136 FRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNL 1195
+ +S LY+ N ELVKQL+ P GS D+ F F++++WGQFKS LWK++LSYWRSPSYNL
Sbjct: 1137 YHDSALYKRNSELVKQLSQPDSGSSDIQFKRTFAQSWWGQFKSILWKMNLSYWRSPSYNL 1196
Query: 1196 MRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARER 1255
MR+MHT +SL+FG LFW GQ LD QQ +F + G+ Y V+FLGINNC+S + ER
Sbjct: 1197 MRMMHTLVSSLIFGALFWKQGQNLDTQQSMFTVFGAIYGLVLFLGINNCASALQYFETER 1256
Query: 1256 TVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGM 1315
VMYRE FAGMYS AYAL QV EIPY+ IQA +VI+ YPMIG+Y SAYK+FW+ Y M
Sbjct: 1257 NVMYRERFAGMYSATAYALGQVVTEIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSM 1316
Query: 1316 FCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMP 1375
FC+++ +NYL M LVS+TPN M+A+IL S+ Y FNLF+GFLIP ++P WWIW+YY+ P
Sbjct: 1317 FCSLLTFNYLAMFLVSITPNFMVAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTP 1376
Query: 1376 TSWALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAF 1435
TSW LN ++SQYGDI +E+ VFG++ ++ F++DYFGFHHD L +TA V I +P+ LA
Sbjct: 1377 TSWTLNGFISSQYGDIHEEINVFGQSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALAS 1436
Query: 1436 LFAFCIERLNFLRR 1449
+FAF + +LNF RR
Sbjct: 1437 MFAFFVGKLNFQRR 1450
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565445|ref|XP_003550950.1| PREDICTED: pleiotropic drug resistance protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2079 bits (5387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 988/1454 (67%), Positives = 1217/1454 (83%), Gaps = 7/1454 (0%)
Query: 1 MAQMIGTDEIESVRIELAEIGRSLRSSFRLPTSSYRSSSAISSRKE--DTDVEHALLWAE 58
MAQ+ G DEIES+R ELAEIGRS+RSSFR SS++S S+I+ ++ D + AL WAE
Sbjct: 1 MAQLAGADEIESLRNELAEIGRSIRSSFRSHASSFQSVSSINPVQQEVDNNAGEALQWAE 60
Query: 59 IERLPTYDRLKASLFDVNSHGNLVDN-QGKLVIDVTKLGALERHVFIEKLIKHIEHDNLQ 117
I+RLPT++R+ ++LFDV + +GK V+DV+KLGA ERH+FIEKLIKHIE+DNL+
Sbjct: 61 IQRLPTFERITSALFDVYDGMETGEKVEGKQVVDVSKLGAQERHMFIEKLIKHIENDNLR 120
Query: 118 LLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGY 177
LL K R R+DKVGI LPT+E+RY+NLCVEA+C++V GKP+PTLWN+ K I KL
Sbjct: 121 LLQKFRNRIDKVGINLPTVELRYQNLCVEAECKIVQGKPIPTLWNTLKEWIFDTTKLPVL 180
Query: 178 KSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYK 237
KS +KI+I+ +GI+KPGRMTLLLGPP GK+T L AL+G L SLKV GE+SYNG+
Sbjct: 181 KSQNSKISIIKSANGIIKPGRMTLLLGPPASGKTTLLLALAGKLGHSLKVQGEISYNGHM 240
Query: 238 LEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
LEEF+P K+SAY+SQ DLHI EMTVRET+DFSARCQGVGSR + +MEVSR+EKE GIVPD
Sbjct: 241 LEEFIPQKSSAYVSQYDLHIPEMTVRETLDFSARCQGVGSRSKLLMEVSRKEKEGGIVPD 300
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMI 357
PD+D YMKA S+ G+K +LQTDYILKILGLD+CADT+VG+ +RRGISGGQKKRLTTGEMI
Sbjct: 301 PDLDAYMKATSINGLKSSLQTDYILKILGLDICADTLVGDPIRRGISGGQKKRLTTGEMI 360
Query: 358 VGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417
VGPTKALFMDEI+NGLDSST +QII+C+Q LVHITD+TALISLLQPAPETFDLFDD+ILM
Sbjct: 361 VGPTKALFMDEISNGLDSSTTFQIISCLQHLVHITDATALISLLQPAPETFDLFDDVILM 420
Query: 418 AEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSV 477
AEGKIVYHGP D++L FFED GF+CP+RKG +DFLQEV+S+KDQA++W TE PYSY S+
Sbjct: 421 AEGKIVYHGPCDYILEFFEDSGFKCPQRKGTADFLQEVISKKDQAKYWNSTEKPYSYVSI 480
Query: 478 DMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRR 537
D F +KFK+ P KL EEL P+DKS+S KNA+ F YSL++WELF ACM RE+LLM++
Sbjct: 481 DQFIEKFKDCPFGLKLKEELSKPFDKSQSHKNALVFKKYSLTKWELFNACMMREILLMKK 540
Query: 538 NSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELSMT 597
NSFVYVFK+TQL+++A +AMTVF+RTRM +DV HGNY+MGSL++SL++LLVDG PELSMT
Sbjct: 541 NSFVYVFKSTQLVIVAFVAMTVFIRTRMTVDVLHGNYFMGSLFYSLIILLVDGFPELSMT 600
Query: 598 IQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQ 657
+ RL V YKQ+ELCF+PAWAY IP+ +LK+PLSL+ S WT L+YYVIGYSPE+ RFFRQ
Sbjct: 601 VSRLAVIYKQKELCFFPAWAYTIPSAVLKIPLSLLESFIWTTLSYYVIGYSPEIGRFFRQ 660
Query: 658 FILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGF 717
F+LLF H TS+SMFRF+ASV QT A++TAG+V IL V LFGGF+I +P MP+WL+WGF
Sbjct: 661 FLLLFIIHVTSVSMFRFIASVCQTVVASVTAGTVTILVVLLFGGFIIPKPYMPSWLQWGF 720
Query: 718 WISPVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIA 777
W+SP+TYGEIGL+VNEFLAPRW+KM N T+GQ++LESRGLNFDG+ +WIS+ AL G
Sbjct: 721 WVSPLTYGEIGLTVNEFLAPRWEKM-SGNRTLGQQVLESRGLNFDGYFYWISIAALIGFT 779
Query: 778 LLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNK--ES 835
+L N+GFTL LTFL S SR +IS EK +++Q ++ SYG + M ++
Sbjct: 780 VLFNVGFTLMLTFLNSPARSRTLISSEKHSELQGQQE-SYGSVGADKKHVGSMVGSTVQT 838
Query: 836 YKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGV 895
KG +VLPF+PL VAF D++YYVD+PLEMR RGF +++L+LL D+TGSLRPG+LTALMGV
Sbjct: 839 RKGGLVLPFQPLAVAFHDVQYYVDSPLEMRNRGFTEKRLQLLSDITGSLRPGILTALMGV 898
Query: 896 SGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESV 955
SGAGKTTLMDVL GRKT G +EGEI+I GYPKVQETFARVSGYCEQ DIHSPNITVEESV
Sbjct: 899 SGAGKTTLMDVLCGRKTGGIIEGEIRIGGYPKVQETFARVSGYCEQNDIHSPNITVEESV 958
Query: 956 IFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVEL 1015
+FSAWLRL +I++KTKAEFVNEV+ TIELD IKDSLVG+P ++GLSTEQRKRLTIAVEL
Sbjct: 959 MFSAWLRLPSQIDAKTKAEFVNEVIHTIELDGIKDSLVGMPNISGLSTEQRKRLTIAVEL 1018
Query: 1016 VANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075
VANPSIIFMDEPTTGLDARAAA+VMRAVKN+V TGRT+ CTIHQPSIDIFEAFDELIL+K
Sbjct: 1019 VANPSIIFMDEPTTGLDARAAAVVMRAVKNVVGTGRTVACTIHQPSIDIFEAFDELILMK 1078
Query: 1076 TGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQI 1135
GGR+ Y GPLGKHSS+VIEYFE I GVPKI++NYNP+TW++EVTS SAEAEL +DFAQI
Sbjct: 1079 AGGRLTYAGPLGKHSSRVIEYFESIPGVPKIKDNYNPSTWMLEVTSRSAEAELGIDFAQI 1138
Query: 1136 FRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNL 1195
+RES LYE N+ELV+QL++PPP S+DL+FP+ F +N W QFK+CLWK HLSYWRSPSYNL
Sbjct: 1139 YRESTLYEQNKELVEQLSSPPPNSRDLYFPSHFPQNGWEQFKACLWKQHLSYWRSPSYNL 1198
Query: 1196 MRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARER 1255
MRI+ A +SLLFG+LFW G+K+++QQD+FN+ G+ Y A +F GINNCS+V+P VA ER
Sbjct: 1199 MRIIFVAVSSLLFGILFWKQGKKINSQQDVFNVFGAMYSAALFFGINNCSTVLPYVATER 1258
Query: 1256 TVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGM 1315
TV+YRE FAGMYSPWAY+ AQV +E+PY+ IQA+ YVII YPM+ Y WSAYK+FW+F+ M
Sbjct: 1259 TVLYRERFAGMYSPWAYSFAQVLIEVPYIFIQAVVYVIITYPMLSYDWSAYKIFWSFFSM 1318
Query: 1316 FCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMP 1375
FC +++YNYLGML+VSLTPN +A+I++S YT+ NLF+G+ +P +IPKWWIWMYY+ P
Sbjct: 1319 FCNILYYNYLGMLIVSLTPNVQLAAIVASSSYTMLNLFSGYFVPRLRIPKWWIWMYYLCP 1378
Query: 1376 TSWALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAF 1435
SWALN M+TSQYGD++KE+ F E K ++ F++DY+GFHHD L + VLI+ P+V+A
Sbjct: 1379 MSWALNGMLTSQYGDVNKEISAFEEKKTIAKFLEDYYGFHHDFLGVVGVVLIVIPIVIAI 1438
Query: 1436 LFAFCIERLNFLRR 1449
LFA+CI LNF +R
Sbjct: 1439 LFAYCIGNLNFQKR 1452
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477643|ref|XP_002266393.2| PREDICTED: pleiotropic drug resistance protein 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2073 bits (5370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 977/1454 (67%), Positives = 1193/1454 (82%), Gaps = 10/1454 (0%)
Query: 4 MIGTDEIE-SVRIELAEIGRSLRSSFRLPTSSY-RSSSAISSRKEDTDVEHALLWAEIER 61
++ T EI SV++EL IG+S++SS + S RSSS + ++ D EH LLWA IER
Sbjct: 41 VLQTTEIAYSVQMELTAIGKSIQSSIQQQASLLIRSSSTHTESIKEDDEEHELLWAAIER 100
Query: 62 LPTYDRLKASLFDVNSHGNLV--DNQGKLVIDVTKLGALERHVFIEKLIKHIEHDNLQLL 119
LPT+ R++ SLF + + +GK ++DVTKL LER +F+EKLIKHIEHDNL+LL
Sbjct: 101 LPTFRRVRTSLFSDDHDDGDGTGEFEGKRMVDVTKLEDLERRMFVEKLIKHIEHDNLRLL 160
Query: 120 WKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKS 179
K+R+R+D+V +KLPT+EVRYKNL VEA+CEVV GKPLPTLWNSF M+SV KL KS
Sbjct: 161 QKLRERIDRVNVKLPTVEVRYKNLSVEAECEVVEGKPLPTLWNSFTSMLSVFTKLVQCKS 220
Query: 180 LEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLE 239
EAKI+IL VSGI+KP R TLLLGPPGCGK+TFL AL+G L+ SLKVTGE+SYNGYKL
Sbjct: 221 QEAKISILKDVSGIIKPSRFTLLLGPPGCGKTTFLLALAGKLNQSLKVTGEISYNGYKLN 280
Query: 240 EFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPD 299
EFVP KTSAYISQ DLHI EMTVRET+DFSARCQGVGSR E MMEVS+REKEAGIVPDPD
Sbjct: 281 EFVPQKTSAYISQYDLHIPEMTVRETIDFSARCQGVGSRAEIMMEVSKREKEAGIVPDPD 340
Query: 300 IDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVG 359
IDTYMKAISV+G KRTLQTDY+LKILGLD+CAD MVG+AMRRGISGGQKKRLTTGEMIVG
Sbjct: 341 IDTYMKAISVEGQKRTLQTDYVLKILGLDICADIMVGDAMRRGISGGQKKRLTTGEMIVG 400
Query: 360 PTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419
PT LFMDEI+ GLDSST +QI+ C+QQL HIT++T L++LLQPAPETFDLFDD+ILMAE
Sbjct: 401 PTNTLFMDEISTGLDSSTTFQIVTCLQQLAHITEATVLVTLLQPAPETFDLFDDLILMAE 460
Query: 420 GKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDM 479
GKIVYHGP+ HVL FFE CGF+CPERKG +DFLQEV+S+KDQ Q+W ++ PY Y SVD
Sbjct: 461 GKIVYHGPRSHVLQFFEHCGFKCPERKGAADFLQEVISKKDQEQYWCRSD-PYRYVSVDQ 519
Query: 480 FSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNS 539
S+ FK SPL +KLDEEL PYDKS+S K+AISFS YSLS+WELFKAC +RELLLM+RNS
Sbjct: 520 LSEMFKASPLGRKLDEELAEPYDKSQSHKDAISFSKYSLSKWELFKACTARELLLMKRNS 579
Query: 540 FVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELSMTIQ 599
FVYVFKTTQL+++A M MTVF+RTRM +D+ H NY++GSL+++L+ L+ +G+ EL +TI
Sbjct: 580 FVYVFKTTQLVIVALMTMTVFIRTRMAVDLQHSNYFLGSLFYTLIRLMTNGVAELFLTIS 639
Query: 600 RLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFI 659
L VFYKQ+E YP WAY+IP +ILK P SLV S+ WT +TYY IGYSPE RFF QF+
Sbjct: 640 TLPVFYKQKEGYLYPVWAYSIPTSILKTPYSLVESILWTSITYYTIGYSPEAKRFFCQFL 699
Query: 660 LLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWI 719
LLFA H S S+ RF+AS FQT A T GS+V++ ++LFGGF++ RPS+P WL+W FW+
Sbjct: 700 LLFALHQGSTSLCRFLASAFQTLITASTVGSLVLVGMYLFGGFIVPRPSLPPWLRWAFWV 759
Query: 720 SPVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALL 779
SP+TYGEIG+S+NEFLAPRWQK+ NTTIG+ +LES GLNF +WI L ALFG +L
Sbjct: 760 SPLTYGEIGISINEFLAPRWQKVYAGNTTIGRRVLESHGLNFPSHFYWICLAALFGFTIL 819
Query: 780 LNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENS----RSTPMTNKES 835
NIGF LALT+ KS G SR +IS +KL+++Q SED + +S S P+
Sbjct: 820 FNIGFVLALTYFKSPGPSRAIISKKKLSQLQGSEDCHSSSCLDNDSTLSASSKPIAETRK 879
Query: 836 YKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGV 895
G+MVLPFEPLTVAF+D++Y+VDTP EMR +G +RKL+LL+D+TGS +PGVLTALMGV
Sbjct: 880 -TGKMVLPFEPLTVAFKDVQYFVDTPPEMRAKGVTERKLQLLHDITGSFKPGVLTALMGV 938
Query: 896 SGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESV 955
SGAGKTTLMDVL+GRKT+G +EG+I+I GYPKVQ+TFAR+SGYCEQ DIHSP++TVEES+
Sbjct: 939 SGAGKTTLMDVLSGRKTTGTIEGDIRIGGYPKVQKTFARISGYCEQYDIHSPHVTVEESL 998
Query: 956 IFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVEL 1015
I+SAWLRL PEI+S+TK FV EV+ETIEL+ IKDSLVG+PG +GLSTEQRKRLTIAVEL
Sbjct: 999 IYSAWLRLPPEIDSETKYRFVEEVIETIELNDIKDSLVGMPGQSGLSTEQRKRLTIAVEL 1058
Query: 1016 VANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075
V+NPSIIFMDEPT+GLDARAAAIVMRAVKN+V TGRT VCTIHQPSIDIFEAFDELIL+K
Sbjct: 1059 VSNPSIIFMDEPTSGLDARAAAIVMRAVKNVVATGRTTVCTIHQPSIDIFEAFDELILMK 1118
Query: 1076 TGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQI 1135
GG+IIY G LG HSS++I YFEGISG+PKI++NYNPATW++EVTS S EAEL +DF++I
Sbjct: 1119 RGGQIIYTGLLGYHSSELIGYFEGISGLPKIKDNYNPATWMLEVTSASVEAELGLDFSKI 1178
Query: 1136 FRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNL 1195
++ES LY+ ELV QL+ PPP S+DL+FP RF +N W QF +CLWKLHLSYWRSP YN
Sbjct: 1179 YKESSLYQVTIELVNQLSKPPPDSRDLNFPNRFPQNGWEQFMACLWKLHLSYWRSPEYNF 1238
Query: 1196 MRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARER 1255
+R + A+ LFG FW GQK+DN QDLFNI+GS YLAV+FLGINNCS+V+P+VA ER
Sbjct: 1239 VRFLFMILAAFLFGATFWQKGQKIDNAQDLFNILGSMYLAVIFLGINNCSTVLPHVATER 1298
Query: 1256 TVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGM 1315
TV+YRE FAGMYS AY+ AQV +E+PY+L+QA+ YV I YPMIGYYWS YK+FW FY
Sbjct: 1299 TVVYREKFAGMYSSRAYSFAQVAIEVPYILLQAILYVAITYPMIGYYWSPYKVFWYFYAT 1358
Query: 1316 FCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMP 1375
FCT +++ YLGML+VSL+PNS +ASIL++ YT+ NLF+GFL+PGPKIPKWWIW Y++ P
Sbjct: 1359 FCTFLYFVYLGMLIVSLSPNSQVASILATAAYTILNLFSGFLMPGPKIPKWWIWCYWICP 1418
Query: 1376 TSWALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAF 1435
TSW+LN ++TSQYGD+ KE+++FGE K +SSF++DYFGF HD L + A L+++P+V A
Sbjct: 1419 TSWSLNGLLTSQYGDMKKEILIFGELKPVSSFLKDYFGFQHDHLGLVAVALLVFPVVFAS 1478
Query: 1436 LFAFCIERLNFLRR 1449
LFA+ I++LNF RR
Sbjct: 1479 LFAYFIDKLNFQRR 1492
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109722|ref|XP_002333208.1| predicted protein [Populus trichocarpa] gi|222835114|gb|EEE73549.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2071 bits (5367), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 984/1452 (67%), Positives = 1181/1452 (81%), Gaps = 49/1452 (3%)
Query: 1 MAQMIGTDEIESVRIELAEIGRSLRSSFRLPTSSYRSSSAISSRK-EDTDVEHALLWAEI 59
MAQ+ G DEIES RIELAEIGRS+++SFR SS+RS S + S D D E W ++
Sbjct: 1 MAQLAGPDEIESFRIELAEIGRSIKTSFRSHVSSFRSVSTVKSEHGRDADDEDVSQWVDV 60
Query: 60 ERLPTYDRLKASLFDVN--SHGNLVDNQGKLVIDVTKLGALERHVFIEKLIKHIEHDNLQ 117
ERLPT++R+ +LF+ + GN GK +I+V KLGA ERH+FIEKLIKHIE+DNL+
Sbjct: 61 ERLPTFERITTALFEEQDGTAGNGDVKGGKRIINVAKLGAQERHMFIEKLIKHIENDNLR 120
Query: 118 LLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGY 177
LL K+RKR+DKVG++LPT+EVRYKNLCVE++CE+V GKPLPTLWN+ K ++S + LS
Sbjct: 121 LLHKLRKRIDKVGVQLPTVEVRYKNLCVESECEIVQGKPLPTLWNTAKSILSGIANLSCS 180
Query: 178 KSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYK 237
K KI+I+ VSG++KPGRMTLLLGPPGCGK+T L ALSG L SLKV GE+SYNG+K
Sbjct: 181 KQ-RTKISIIKDVSGVIKPGRMTLLLGPPGCGKTTMLLALSGKLSHSLKVAGEMSYNGHK 239
Query: 238 LEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
LEEFVP K+SAY+SQ DLHI EMTVRET+DFSARCQG GSR E MMEVSRREK+AGI+PD
Sbjct: 240 LEEFVPQKSSAYVSQYDLHIPEMTVRETIDFSARCQGAGSRAEIMMEVSRREKQAGILPD 299
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMI 357
D+D YMKAISV+G+K LQTDYILKILGLD+CADTMVG+AMRRGISGGQKKRLTTGEMI
Sbjct: 300 SDVDAYMKAISVEGLKSNLQTDYILKILGLDICADTMVGDAMRRGISGGQKKRLTTGEMI 359
Query: 358 VGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417
VGPT+ALFMDEI+NGLDSST QII+C+Q L HI D+T LISLLQPAPETFDLFDDIILM
Sbjct: 360 VGPTRALFMDEISNGLDSSTTLQIISCLQHLSHIMDATVLISLLQPAPETFDLFDDIILM 419
Query: 418 AEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSV 477
EGKIVYHGP+ + FFEDCGFRCPERKGV+DFLQEV+SRKDQ Q+W TE PY Y SV
Sbjct: 420 TEGKIVYHGPRSSICKFFEDCGFRCPERKGVADFLQEVISRKDQGQYWFLTEEPYRYVSV 479
Query: 478 DMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRR 537
D F KKFKES L K L+EE+ P+DKSK+ K+A+SF+ YSL++WE+FKAC RE LLM+R
Sbjct: 480 DQFVKKFKESQLGKNLEEEISKPFDKSKNHKSALSFTSYSLTKWEMFKACSVREFLLMKR 539
Query: 538 NSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELSMT 597
NSF+YVFKTTQL ++A++ MTV LRTRM ID H +YYMG+L++ L++LLVDG PEL MT
Sbjct: 540 NSFIYVFKTTQLFIIASITMTVLLRTRMAIDAIHASYYMGALFYGLLILLVDGFPELQMT 599
Query: 598 IQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQ 657
+ RL VFYK +ELCFYPAWAYAIP+ ILKVP+SL+ + WT LTYYVIGYSPE RF RQ
Sbjct: 600 VSRLAVFYKHRELCFYPAWAYAIPSAILKVPVSLLEAFVWTALTYYVIGYSPEFGRFLRQ 659
Query: 658 FILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGF 717
F+LLF H TS SMFRF+ASVFQT A+ AGS+ IL +FGGFVI++P+MP WL WGF
Sbjct: 660 FLLLFLVHLTSTSMFRFVASVFQTVVASTAAGSLAILVASVFGGFVIAKPAMPVWLAWGF 719
Query: 718 WISPVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIA 777
WISP+TYGEIGL+VNEFLAPRW+K++ T+IGQ+ LESRGL+F G+ +WIS+GAL G+
Sbjct: 720 WISPLTYGEIGLTVNEFLAPRWEKVVSGYTSIGQQTLESRGLDFHGYFYWISVGALIGMT 779
Query: 778 LLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKESYK 837
+LLNIGFT+ALTFLK
Sbjct: 780 VLLNIGFTMALTFLKR-------------------------------------------- 795
Query: 838 GRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSG 897
RMVLPFEPL + F D++YYVDTPLEMR+RG +KLRLL D+TG+ +PG+LTALMGVSG
Sbjct: 796 -RMVLPFEPLAMTFADVQYYVDTPLEMRKRGNQQKKLRLLSDITGAFKPGILTALMGVSG 854
Query: 898 AGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIF 957
AGKTTLMDVL+GRKT G +EGEI+I GY KVQ++FAR+SGYCEQTDIHSP ITVEES+++
Sbjct: 855 AGKTTLMDVLSGRKTGGTIEGEIRIGGYLKVQDSFARISGYCEQTDIHSPQITVEESLVY 914
Query: 958 SAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVA 1017
SAWLRL PEIN++TK EFVNEV++TIELD IKDSLVG+PGV+GLSTEQRKRLTIAVELVA
Sbjct: 915 SAWLRLPPEINARTKTEFVNEVIDTIELDEIKDSLVGMPGVSGLSTEQRKRLTIAVELVA 974
Query: 1018 NPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
NPSIIFMDEPT+GLDARAAAIVMRA KNIV TGRT+VCTIHQPSIDIFEAFDELIL+K G
Sbjct: 975 NPSIIFMDEPTSGLDARAAAIVMRAAKNIVETGRTVVCTIHQPSIDIFEAFDELILMKIG 1034
Query: 1078 GRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQIFR 1137
GRIIY GPLG+ SS+VIEYFE I GVPKI++NYNPATW++EVTS SAEAEL VDF +I+
Sbjct: 1035 GRIIYSGPLGQGSSRVIEYFESIPGVPKIKDNYNPATWILEVTSQSAEAELGVDFGRIYE 1094
Query: 1138 ESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMR 1197
S LY+ N +LVKQL++P PGSK+LHFPTRF +N W Q K+CLWK +LSYWRSPSYNL+R
Sbjct: 1095 GSTLYQENEDLVKQLSSPTPGSKELHFPTRFPQNGWEQLKACLWKQNLSYWRSPSYNLVR 1154
Query: 1198 IMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARERTV 1257
I+ ++ + LFG+L+W G+K+ N+QDLFNIVGS Y +VF GINNCSSV+P V ERTV
Sbjct: 1155 IVFMSSGASLFGLLYWQQGKKIKNEQDLFNIVGSMYALIVFFGINNCSSVLPFVTTERTV 1214
Query: 1258 MYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFC 1317
+YRE FAGMYS WAY+ AQV VE+PYLL+Q++ Y+I YPMIGY SAYK+FW+F+ MFC
Sbjct: 1215 LYRERFAGMYSSWAYSFAQVLVEVPYLLVQSIIYLITTYPMIGYSSSAYKIFWSFHSMFC 1274
Query: 1318 TMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTS 1377
T++F+NY GMLLVSLTPN +A+IL+S YT+ N F+GF++P P IPKWW+W+YY+ PTS
Sbjct: 1275 TLLFFNYQGMLLVSLTPNIQVAAILASFSYTMLNFFSGFVVPKPHIPKWWLWLYYICPTS 1334
Query: 1378 WALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAFLF 1437
WALN M+TSQYGD+D+E+ VFGE + LS FI+DYFGFHH L + VL+I+P+V A LF
Sbjct: 1335 WALNGMLTSQYGDVDEEISVFGEARALSDFIEDYFGFHHSFLSVVGVVLVIFPIVTASLF 1394
Query: 1438 AFCIERLNFLRR 1449
A+ I RLNF RR
Sbjct: 1395 AYFIGRLNFQRR 1406
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445399|ref|XP_004140460.1| PREDICTED: pleiotropic drug resistance protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2070 bits (5364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 978/1447 (67%), Positives = 1201/1447 (82%), Gaps = 13/1447 (0%)
Query: 8 DEIESVRIELAEIGR--SLRSSFRLPTSSYRSSSAISSRKE-DTDVEHALLWAEIERLPT 64
DE E VRIE+ EI R SL SSFR SS+RS+S S +E + D A LWA +ERLPT
Sbjct: 2 DEREPVRIEVPEIRRIRSLSSSFRRQASSFRSNSTASLEEEHERDTIDASLWATVERLPT 61
Query: 65 YDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFIEKLIKHIEHDNLQLLWKIRK 124
++RL++SLF+ + +N G+ V+DVTKLG +ERH+FI++LIKHIE+DNL+LL KI++
Sbjct: 62 FERLRSSLFEDKREVEVDENGGRRVVDVTKLGDVERHLFIQRLIKHIENDNLKLLTKIKE 121
Query: 125 RVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKI 184
R+ KVG+K PT+EV+YKN+ +EA+ E+V GK LPTLWNSF+ + + KL G KS EAK
Sbjct: 122 RIHKVGVKFPTVEVKYKNVHIEAEYEIVRGKALPTLWNSFQSNLFDIMKLCGSKSHEAKT 181
Query: 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP 244
NI+ VSG++KPGR+TLLLGPPGCGK+T LKALSGNL+ SLK+ G++ YNG KLEEFVP
Sbjct: 182 NIVEDVSGVIKPGRLTLLLGPPGCGKTTLLKALSGNLNKSLKMRGQICYNGQKLEEFVPQ 241
Query: 245 KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
KTSAYISQ DLHI EMTVRET+DFSARCQG+GSR + M EV +REKE GI+PDPD+DTYM
Sbjct: 242 KTSAYISQYDLHIPEMTVRETLDFSARCQGIGSRADMMKEVCKREKEEGIIPDPDVDTYM 301
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKAL 364
KAISV+G++++LQTDYILKILGLD+CADT+VG+ MRRGISGGQKKRLTTGEMIVGP +AL
Sbjct: 302 KAISVEGLRQSLQTDYILKILGLDICADTLVGDVMRRGISGGQKKRLTTGEMIVGPNRAL 361
Query: 365 FMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVY 424
FMDEITNGLDSSTA+QI++C+Q VH++D+T LISLLQPAPETF+LFDD+ILMA+ KI+Y
Sbjct: 362 FMDEITNGLDSSTAFQIVSCLQHFVHLSDATILISLLQPAPETFELFDDLILMAQNKIIY 421
Query: 425 HGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKF 484
HGP + VL FFEDCGF+CP+RKGV+DFLQEV+S+KDQ QFW +PY++ S+D F K F
Sbjct: 422 HGPCNQVLEFFEDCGFKCPKRKGVADFLQEVISKKDQPQFWYPNHIPYAHISIDTFRKNF 481
Query: 485 KESPLVKKLDEEL--LVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVY 542
K S +KL+EEL +D K K+ +++S+WE+FKAC SRELLLM+RNSF+Y
Sbjct: 482 KSSSFGRKLEEELSKASSFDNDKGDKSGSFHFDHNVSKWEVFKACASRELLLMKRNSFIY 541
Query: 543 VFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELSMTIQRLE 602
VFKTTQLI++ ++ MTVFLRTRM +D+ H NYYMG+L+F+L++LLVDG PEL+MTIQRLE
Sbjct: 542 VFKTTQLIVIGSITMTVFLRTRMGVDLEHSNYYMGALFFALLLLLVDGFPELAMTIQRLE 601
Query: 603 VFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFILLF 662
VFYKQ+E FYPAWAY IPA ILK+PLSL+ SL WT LTYYVIGY+PE RFFRQ I LF
Sbjct: 602 VFYKQKEFYFYPAWAYVIPAAILKIPLSLLGSLVWTSLTYYVIGYTPEASRFFRQLITLF 661
Query: 663 ASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPV 722
A H TS+SMFR +A VFQT A+M GS IL V +FGGF+I+ PSMPAWL+W FW SP+
Sbjct: 662 AVHLTSLSMFRLVAGVFQTNVASMAVGSFAILTVLIFGGFIIAHPSMPAWLEWAFWASPI 721
Query: 723 TYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNI 782
+YGEI LS NEFLAPRWQK+ +N+TIG ++L+SRGL++ + FWISL ALFG ALL N+
Sbjct: 722 SYGEIALSTNEFLAPRWQKLEASNSTIGHDVLQSRGLDYRPYFFWISLAALFGFALLFNV 781
Query: 783 GFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKESYKGRMVL 842
GF LALTFL GSSR +IS+EKL+K + ++S E T ES + R+ L
Sbjct: 782 GFALALTFLNPPGSSRAIISYEKLSKSKNRQESISVEQAP--------TAVESIQARLAL 833
Query: 843 PFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTT 902
PF+PLTV FQDL+YYVD PLEMRERG + +KL+LL D+TG+LRPG+LTALMGVSGAGKTT
Sbjct: 834 PFKPLTVVFQDLQYYVDMPLEMRERGASQKKLQLLSDITGALRPGILTALMGVSGAGKTT 893
Query: 903 LMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLR 962
L+DVLAGRKTSGYVEGEI+I G+PKVQETFAR+SGYCEQTDIHSP+ITVEES+IFSAWLR
Sbjct: 894 LLDVLAGRKTSGYVEGEIRIGGFPKVQETFARISGYCEQTDIHSPHITVEESLIFSAWLR 953
Query: 963 LAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 1022
L +IN KT+A+FVNEVLETIELD+IKDSLVGIPGV+GLSTEQRKRLTIAVELV+NPSII
Sbjct: 954 LPSDINLKTRAQFVNEVLETIELDSIKDSLVGIPGVSGLSTEQRKRLTIAVELVSNPSII 1013
Query: 1023 FMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIY 1082
FMDEPTTGLDARAAAIVMRAVKN+V+TGRTIVCTIHQPSIDIFE+FDELILLKTGG+++Y
Sbjct: 1014 FMDEPTTGLDARAAAIVMRAVKNVVDTGRTIVCTIHQPSIDIFESFDELILLKTGGQMVY 1073
Query: 1083 CGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQIFRESVLY 1142
CGPLG+HSS+VIEYFE + GV KIR NYNPATW++EVTS+SAEAEL +DFAQ++R S
Sbjct: 1074 CGPLGQHSSKVIEYFEHVPGVSKIRENYNPATWMLEVTSSSAEAELGIDFAQVYRNSSQN 1133
Query: 1143 ENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIMHTA 1202
E+ +ELVKQL+ PPGS+DLHF FS NF GQFK+CLWK +LSYWR+PSYN MR +H+
Sbjct: 1134 EHIKELVKQLSILPPGSRDLHFSNIFSHNFVGQFKACLWKQNLSYWRNPSYNSMRFLHST 1193
Query: 1203 TASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARERTVMYREG 1262
+SL+FG+LFW +KL+NQQDLFN+ GS + AV+F+GINNCSSV+P+V+ ERTVMYRE
Sbjct: 1194 LSSLIFGILFWKQAKKLENQQDLFNVFGSMFTAVIFMGINNCSSVLPHVSMERTVMYRER 1253
Query: 1263 FAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFCTMMFY 1322
F+GMYS WAY+LAQV VE PYL IQ Y+ I YPMIG+ SA K+ FY MF T++++
Sbjct: 1254 FSGMYSSWAYSLAQVMVEAPYLFIQVAIYIFITYPMIGFDGSASKVLLCFYAMFSTLLYF 1313
Query: 1323 NYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWALNA 1382
NYLGMLLVS+TPN IASILSS YT+FNLF+GFL+P P+IP WWIW+YYM PTSW+LN
Sbjct: 1314 NYLGMLLVSITPNYQIASILSSAFYTMFNLFSGFLVPKPQIPGWWIWLYYMTPTSWSLNC 1373
Query: 1383 MVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAFLFAFCIE 1442
++TSQYGD+DK + VF ET +S+F++ YFGFHH++LP+ A+LI++P+++AFLF F I
Sbjct: 1374 LLTSQYGDVDKPLKVFKETTTISAFLRHYFGFHHNQLPLVGAILILFPILIAFLFGFFIG 1433
Query: 1443 RLNFLRR 1449
+LNF RR
Sbjct: 1434 KLNFQRR 1440
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1449 | ||||||
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.997 | 0.996 | 0.664 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.960 | 0.985 | 0.674 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.962 | 0.966 | 0.539 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.992 | 0.988 | 0.515 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.927 | 0.949 | 0.532 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.972 | 0.969 | 0.522 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.957 | 0.974 | 0.523 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.964 | 0.983 | 0.475 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.947 | 0.962 | 0.485 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.488 | 0.481 | 0.545 | 3.3e-214 |
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5195 (1833.8 bits), Expect = 0., P = 0.
Identities = 966/1454 (66%), Positives = 1197/1454 (82%)
Query: 1 MAQMIGTDEIESVRIELAEIGRSLRSSFRLPTXXXXXXXXXXXRKEDTDV-----EHALL 55
MA M+G D+IES+R+ELAEIGRS+RSSFR T + D DV E+AL
Sbjct: 1 MAHMVGADDIESLRVELAEIGRSIRSSFRRHTSSFRSSSSIYEVENDGDVNDHDAEYALQ 60
Query: 56 WAEIERLPTYDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFIEKLIKHIEHDN 115
WAEIERLPT R++++L D + +G+ V+DVTKLGA+ERH+ IEKLIKHIE+DN
Sbjct: 61 WAEIERLPTVKRMRSTLLDDGDES--MTEKGRRVVDVTKLGAVERHLMIEKLIKHIENDN 118
Query: 116 LQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLS 175
L+LL KIR+R+D+VG++LPTIEVRY++L V A+CEVV GK LPTLWN+ K ++S L KL+
Sbjct: 119 LKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTLWNTAKRVLSELVKLT 178
Query: 176 GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG 235
G K+ EAKINI+N V+GI+KPGR+TLLLGPP CGK+T LKALSGNL+ +LK +GE+SYNG
Sbjct: 179 GAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLKCSGEISYNG 238
Query: 236 YKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIV 295
++L+EFVP KTSAYISQ DLHIAEMTVRETVDFSARCQGVGSR + MMEVS+REKE GI+
Sbjct: 239 HRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSKREKEKGII 298
Query: 296 PDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGE 355
PD ++D YMKAISV+G++R+LQTDYILKILGLD+CA+ ++G+ MRRGISGGQKKRLTT E
Sbjct: 299 PDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQKKRLTTAE 358
Query: 356 MIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415
MIVGPTKALFMDEITNGLDSSTA+QI+ +QQ HI+ +T L+SLLQPAPE++DLFDDI+
Sbjct: 359 MIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPESYDLFDDIM 418
Query: 416 LMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYF 475
LMA+G+IVYHGP+ VL FFEDCGFRCPERKGV+DFLQEV+S+KDQAQ+W H +LPYS+
Sbjct: 419 LMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWWHEDLPYSFV 478
Query: 476 SVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLM 535
SV+M SKKFK+ + KK+++ L PYD+SKS K+A+SFSVYSL WELF AC+SRE LLM
Sbjct: 479 SVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIACISREYLLM 538
Query: 536 RRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELS 595
+RN FVY+FKT QL+M A + MTVF+RTRM ID+ HGN YM +L+F+L++LLVDG PELS
Sbjct: 539 KRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIHGNSYMSALFFALIILLVDGFPELS 598
Query: 596 MTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFF 655
MT QRL VFYKQ++LCFYPAWAYAIPAT+LKVPLS SL WTCL+YYVIGY+PE RFF
Sbjct: 599 MTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFF 658
Query: 656 RQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSXXXXXXXXXXXXXXSRPSMPAWLKW 715
+QFILLFA HFTSISMFR +A++FQT A++TAGS PSMPAWLKW
Sbjct: 659 KQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKW 718
Query: 716 GFWISPVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFG 775
GFW +P++YGEIGLSVNEFLAPRW +M P N T+G+ IL++RG++++G+++W+SL AL G
Sbjct: 719 GFWANPLSYGEIGLSVNEFLAPRWNQMQPNNFTLGRTILQTRGMDYNGYMYWVSLCALLG 778
Query: 776 IALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKES 835
+L NI FTLALTFLKS SSR MIS +KL+++Q +E S+ V++ + +P+ +E
Sbjct: 779 FTVLFNIIFTLALTFLKSPTSSRAMISQDKLSELQGTEKSTEDSSVRKKTTDSPVKTEEE 838
Query: 836 YKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGV 895
K MVLPF+PLTV FQDL Y+VD P+EMR++G+ +KL+LL D+TG+ RPG+LTALMGV
Sbjct: 839 DK--MVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGV 896
Query: 896 SGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESV 955
SGAGKTTL+DVLAGRKTSGY+EG+I+ISG+PKVQETFARVSGYCEQTDIHSPNITVEESV
Sbjct: 897 SGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESV 956
Query: 956 IFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVEL 1015
I+SAWLRLAPEI++ TK +FV +VLETIELD IKDSLVG+ GV+GLSTEQRKRLTIAVEL
Sbjct: 957 IYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVEL 1016
Query: 1016 VANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075
VANPSIIFMDEPTTGLDARAAAIVMRAVKN+ +TGRTIVCTIHQPSIDIFEAFDEL+LLK
Sbjct: 1017 VANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLK 1076
Query: 1076 TGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQI 1135
GGR+IY GPLG+HS +IEYFE + +PKI++N+NPATW+++V+S S E EL VDFA+I
Sbjct: 1077 RGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKI 1136
Query: 1136 FRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNL 1195
+ +S LY+ N ELVKQL+ P GS D+ F F++++WGQFKS LWK++LSYWRSPSYNL
Sbjct: 1137 YHDSALYKRNSELVKQLSQPDSGSSDIQFKRTFAQSWWGQFKSILWKMNLSYWRSPSYNL 1196
Query: 1196 MRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARER 1255
MR+MHT +SL+FG LFW GQ LD QQ +F + G+ Y V+FLGINNC+S + ER
Sbjct: 1197 MRMMHTLVSSLIFGALFWKQGQNLDTQQSMFTVFGAIYGLVLFLGINNCASALQYFETER 1256
Query: 1256 TVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGM 1315
VMYRE FAGMYS AYAL QV EIPY+ IQA +VI+ YPMIG+Y SAYK+FW+ Y M
Sbjct: 1257 NVMYRERFAGMYSATAYALGQVVTEIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSM 1316
Query: 1316 FCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMP 1375
FC+++ +NYL M LVS+TPN M+A+IL S+ Y FNLF+GFLIP ++P WWIW+YY+ P
Sbjct: 1317 FCSLLTFNYLAMFLVSITPNFMVAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTP 1376
Query: 1376 TSWALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAF 1435
TSW LN ++SQYGDI +E+ VFG++ ++ F++DYFGFHHD L +TA V I +P+ LA
Sbjct: 1377 TSWTLNGFISSQYGDIHEEINVFGQSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALAS 1436
Query: 1436 LFAFCIERLNFLRR 1449
+FAF + +LNF RR
Sbjct: 1437 MFAFFVGKLNFQRR 1450
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5101 (1800.7 bits), Expect = 0., P = 0.
Identities = 946/1403 (67%), Positives = 1166/1403 (83%)
Query: 49 DVEHALLWAEIERLPTYDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFIEKLI 108
+ EHAL WAEI+RLPT+ RL++SL D G +GK V+DVTKLGA+ERH+ IEKLI
Sbjct: 20 EAEHALQWAEIQRLPTFKRLRSSLVDKYGEGT---EKGKKVVDVTKLGAMERHLMIEKLI 76
Query: 109 KHIEHDNLQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMI 168
KHIE+DNL+LL KIR+R+++VG++ P+IEVRY++L VEA CEVV GK LPTLWNS K +
Sbjct: 77 KHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTLWNSLKHVF 136
Query: 169 SVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVT 228
L KLSG ++ EA I IL VSGI+ PGR+TLLLGPPGCGK+T LKALSGNL+ +LK
Sbjct: 137 LDLLKLSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLENNLKCY 196
Query: 229 GEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRR 288
GE+SYNG+ L E VP KTSAYISQ+DLHIAEMT RET+DFSARCQGVGSR + MMEVS+R
Sbjct: 197 GEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSRTDIMMEVSKR 256
Query: 289 EKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQK 348
EK+ GI+PDP+ID YMKAISVKG+KR+LQTDYILKILGLD+CA+T+VGNAM+RGISGGQK
Sbjct: 257 EKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRGISGGQK 316
Query: 349 KRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETF 408
KRLTT EMIVGPTKALFMDEITNGLDSSTA+QII +QQ+ HIT++T +SLLQPAPE++
Sbjct: 317 KRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQPAPESY 376
Query: 409 DLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHT 468
DLFDDI+LMAEGKIVYHGP+D VL FFE+CGF+CPERKGV+DFLQEV+S+KDQ Q+WLH
Sbjct: 377 DLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKKDQGQYWLHQ 436
Query: 469 ELPYSYFSVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACM 528
LP+S+ SVD SK+FK+ + +K++E L PYD SK+ K+A+SF+VYSL +WELF+AC+
Sbjct: 437 NLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLPKWELFRACI 496
Query: 529 SRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLV 588
SRE LLM+RN FVY+FKT QL++ A + MTVF+RTRM+ID+ HGN YM L+F+ VVLLV
Sbjct: 497 SREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDIDIIHGNSYMSCLFFATVVLLV 556
Query: 589 DGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYS 648
DG+PELSMT+QRL VFYKQ++LCFYPAWAYAIPAT+LK+PLS SL WTCLTYYVIGY+
Sbjct: 557 DGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTYYVIGYT 616
Query: 649 PEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSXXXXXXXXXXXXXXSRPS 708
PE +RFFRQF++LFA HFTSISMFR +A++FQT AAMTAGS
Sbjct: 617 PEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFVFAGFAIPYTD 676
Query: 709 MPAWLKWGFWISPVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWI 768
MP WLKWGFW++P++Y EIGLSVNEFLAPRWQKM PTN T+G+ ILESRGLN+D +++W+
Sbjct: 677 MPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQPTNVTLGRTILESRGLNYDDYMYWV 736
Query: 769 SLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSR-- 826
SL AL G+ ++ N FTLAL+FLKS SSR MIS +KL+++Q ++DSS VK+N
Sbjct: 737 SLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQGTKDSS----VKKNKPLD 792
Query: 827 STPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRP 886
S+ TN++ G+M+LPF+PLT+ FQDL YYVD P+EM+ +G+ ++KL+LL ++TG+ RP
Sbjct: 793 SSIKTNEDP--GKMILPFKPLTITFQDLNYYVDVPVEMKGQGYNEKKLQLLSEITGAFRP 850
Query: 887 GVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHS 946
GVLTALMG+SGAGKTTL+DVLAGRKTSGY+EGEI+ISG+ KVQETFARVSGYCEQTDIHS
Sbjct: 851 GVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETFARVSGYCEQTDIHS 910
Query: 947 PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQR 1006
P+ITVEES+I+SAWLRL PEIN +TK FV +VLETIEL+ IKD+LVG+ GV+GLSTEQR
Sbjct: 911 PSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIKDALVGVAGVSGLSTEQR 970
Query: 1007 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFE 1066
KRLT+AVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN+ TGRTIVCTIHQPSI IFE
Sbjct: 971 KRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTIVCTIHQPSIHIFE 1030
Query: 1067 AFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEA 1126
AFDEL+LLK GGR+IY GPLG+HSS VIEYF+ I GV KIR+ YNPATW++EVTS S E
Sbjct: 1031 AFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNPATWMLEVTSESVET 1090
Query: 1127 ELCVDFAQIFRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLS 1186
EL +DFA+I+ ES LY+NN ELVK+L+ P GS DLHF F++N+W QFKSCLWK+ LS
Sbjct: 1091 ELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFAQNWWEQFKSCLWKMSLS 1150
Query: 1187 YWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSS 1246
YWRSPSYNLMRI HT +S +FG+LFW+ G+K+D QQ+LF ++G+ Y V+F+GINNC+S
Sbjct: 1151 YWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDTQQNLFTVLGAIYGLVLFVGINNCTS 1210
Query: 1247 VIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAY 1306
+ ER VMYRE FAGMYS +AYALAQV EIPY+ IQ+ +VI+ YPMIG+Y S
Sbjct: 1211 ALQYFETERNVMYRERFAGMYSAFAYALAQVVTEIPYIFIQSAEFVIVIYPMIGFYASFS 1270
Query: 1307 KLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKW 1366
K+FW+ Y MFC ++ +NYL M L+S+TPN M+A+IL S+ +T FN+FAGFLIP P+IPKW
Sbjct: 1271 KVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTTFNIFAGFLIPKPQIPKW 1330
Query: 1367 WIWMYYMMPTSWALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPITAAVL 1426
W+W YY+ PTSW LN +SQYGDI +++ FGETK ++SF++DYFGFHHDRL ITA +L
Sbjct: 1331 WVWFYYITPTSWTLNLFFSSQYGDIHQKINAFGETKTVASFLEDYFGFHHDRLMITAIIL 1390
Query: 1427 IIYPLVLAFLFAFCIERLNFLRR 1449
I +P+ LA ++AF + +LNF +R
Sbjct: 1391 IAFPIALATMYAFFVAKLNFQKR 1413
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4002 (1413.8 bits), Expect = 0., P = 0.
Identities = 762/1412 (53%), Positives = 1016/1412 (71%)
Query: 45 KEDTDVEHALLWAEIERLPTYDRLKASLFDVNSHGNLVDNQG-KLVIDVTKLGALERHVF 103
K + E AL WA IE+LPTY+RL+ SL ++ NQ +DVTKL ER F
Sbjct: 42 KSVNEDEEALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQILNKAVDVTKLDGEERQKF 101
Query: 104 IEKLIKHIEHDNLQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNS 163
I+ + K E DN ++L K+R R+D+VGI+LPT+EVRY +L V+A C + LP+L N+
Sbjct: 102 IDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADC-YTGDRSLPSLLNA 160
Query: 164 FKGMISVLPKLSGYK-SLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD 222
+ M + G + + +A++ IL VSGI+KP RMTLLLGPP GK+T L AL+G LD
Sbjct: 161 VRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGKLD 220
Query: 223 PSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETM 282
SL V+GEV+YNGY+L EFVP KTSAYISQNDLH+ MTV+ET+DFSARCQGVG+R + +
Sbjct: 221 KSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARCQGVGTRYDLL 280
Query: 283 MEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG 342
E++RREK+AGI P+ D+D +MKA + +GVK +L TDY LKILGLD+C DT+VG+ M RG
Sbjct: 281 NELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKDTIVGDDMMRG 340
Query: 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQ 402
ISGGQKKR+TTGEMIVGPTK LFMDEI+ GLDSST +QI+ C+QQ+VH+T++T LISLLQ
Sbjct: 341 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEATVLISLLQ 400
Query: 403 PAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQA 462
PAPETFDLFDDIIL++EG+IVY GP+DH+L FFE GF+CPERKG +DFLQEV S+KDQ
Sbjct: 401 PAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFLQEVTSKKDQE 460
Query: 463 QFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWE 522
Q+W+ PY Y V F+ FK+ + KL EL VPYDKSKS K A+ F YS+ + E
Sbjct: 461 QYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMFDKYSIKKTE 520
Query: 523 LFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEI-DVFHGNYYMGSLYF 581
L K+C +E +LM+RNSF YVFKT Q+I++A + T++LRT M + N Y+GSL F
Sbjct: 521 LLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDANIYVGSLLF 580
Query: 582 SLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLT 641
+++V + +G+ E++MTIQRL VFYKQ++L F+P W Y +P +L +P+S+ S AW +T
Sbjct: 581 AMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIFESTAWMVVT 640
Query: 642 YYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSXXXXXXXXXXX 701
YY IGY+P+ RFF+QF+++F + +FRF+AS +T A T G
Sbjct: 641 YYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVLVLLVVFLTGG 700
Query: 702 XXXSRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRWQKMLPTNTT--IGQEILESRGL 759
R +P W +W +WISP++Y ++VNE APRW + N+T +G +L +
Sbjct: 701 FLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTTRLGTSVLNIWDV 760
Query: 760 NFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGE 819
D +WI +G L G ++ N FTLALT+L G ++ ++ E E E++ G+
Sbjct: 761 FDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKE------EDEEAK-GK 813
Query: 820 PVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYD 879
+++ T M + + KG MVLPF PL ++F D+KY+VD P EMRE+G + +L+LL
Sbjct: 814 A--GSNKETEMESVSAKKG-MVLPFTPLAMSFDDVKYFVDMPAEMREQGVQETRLQLLKG 870
Query: 880 VTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYC 939
VT + RPGVLTALMGVSGAGKTTLMDVLAGRKT GY+EG++++SG+PK QETFAR+SGYC
Sbjct: 871 VTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVSGFPKKQETFARISGYC 930
Query: 940 EQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVN 999
EQTDIHSP +TV ES+IFSA+LRLA E++ + K FV++V+E +EL ++D++VG+PGV
Sbjct: 931 EQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELVDLRDAIVGLPGVT 990
Query: 1000 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQ 1059
GLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMRAV+N V+TGRT+VCTIHQ
Sbjct: 991 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQ 1050
Query: 1060 PSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEV 1119
PSIDIFEAFDEL+L+K GG +IY GPLG++S +V+EYFE GVPKI YNPATW++E
Sbjct: 1051 PSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPGVPKIPEKYNPATWMLEA 1110
Query: 1120 TSTSAEAELCVDFAQIFRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSC 1179
+S +AE +L VDFA++++ S L + N+ LV++L+ PP G+ DL+F T+FS+N WGQFKSC
Sbjct: 1111 SSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQGATDLYFATQFSQNTWGQFKSC 1170
Query: 1180 LWKLHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFL 1239
LWK +YWRSP YNL+R + T SL+ G +FW G K N QDL ++G+ Y AVVF+
Sbjct: 1171 LWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNVQDLTMVIGAIYAAVVFV 1230
Query: 1240 GINNCSSVIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMI 1299
GINNCS+V P VA ERTV YRE AGMYS YA++QVT E+PY+LIQ Y +I Y M+
Sbjct: 1231 GINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAISQVTCELPYVLIQTTYYSLIIYSMV 1290
Query: 1300 GYYWSAYKLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIP 1359
G+ W A K W + + + +++ Y GM+ VSLTPN +ASI +S Y +FNLF+GF IP
Sbjct: 1291 GFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIP 1350
Query: 1360 GPKIPKWWIWMYYMMPTSWALNAMVTSQYGDIDKEMIVFGETKKLS--SFIQDYFGFHHD 1417
PKIPKWW+W Y++ P +W + ++TSQYGD++ + + G L+ +I+D +GF D
Sbjct: 1351 RPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIALLGGAPGLTVKQYIKDQYGFESD 1410
Query: 1418 RLPITAAVLIIYPLVLAFLFAFCIERLNFLRR 1449
+ A VL+ + + AF+FAFCI+ LNF R
Sbjct: 1411 YMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3825 (1351.5 bits), Expect = 0., P = 0.
Identities = 755/1465 (51%), Positives = 1015/1465 (69%)
Query: 1 MAQMIGTDEIE----SVRIELAEIG-RSL---RSSFR-LPTXXXXXXXXXXXRKEDTDVE 51
MA M+G DE S R+ LA RSL SFR + R+E+ D+E
Sbjct: 1 MAAMLGRDEDPVGALSGRVSLASTSHRSLVGASKSFRDVFMPQTDEVFGRSERREEDDME 60
Query: 52 HALLWAEIERLPTYDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFIEKLIKHI 111
L WA IERLPT+DRL+ + S ++ + ID+T+L ++ +E ++ +
Sbjct: 61 --LRWAAIERLPTFDRLRKGMLPQTSANGKIELED---IDLTRLEPKDKKHLMEMILSFV 115
Query: 112 EHDNLQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWN-SFKGMISV 170
E DN + L +R+R D+VGI++P IEVRY+N+ VE + LPTL+N + + S+
Sbjct: 116 EEDNEKFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSA-SRALPTLFNVTLNTLESI 174
Query: 171 LPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGE 230
L S KI IL +SGI+KP RMTLLLGPP GK+T L+AL+G LD +L+++G
Sbjct: 175 LGFFHLLPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGR 234
Query: 231 VSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREK 290
++Y G++ EFVP KT AYISQ+DLH EMTVRE +DFS RC GVGSR + M E+SRREK
Sbjct: 235 ITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMSELSRREK 294
Query: 291 EAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKR 350
E GI PDP ID +MK+I++ G + +L TDY+LKILGLD+CAD + G+ MRRGISGGQKKR
Sbjct: 295 EEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRRGISGGQKKR 354
Query: 351 LTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL 410
LTTGEM+VGP +ALFMDEI+ GLDSST +QI ++QLVHI+D T +ISLLQPAPETF+L
Sbjct: 355 LTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLLQPAPETFEL 414
Query: 411 FDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTEL 470
FDDIIL++EG+IVY GP+D+VL FFE GF+CPERKGV+DFLQEV S+KDQ Q+W E
Sbjct: 415 FDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNKREQ 474
Query: 471 PYSYFSVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSR 530
PY+Y SV FS F +KL E VPYDK+K+ A+ Y +S WELFKAC R
Sbjct: 475 PYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNWELFKACFDR 534
Query: 531 ELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEID-VFHGNYYMGSLYFSLVVLLVD 589
E LLM+RNSFVYVFKT Q+ +++ + MTV+LRT M + V G + G+++FSL+ ++ +
Sbjct: 535 EWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFSLINVMFN 594
Query: 590 GMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSP 649
G+ EL+ T+ RL VFYKQ++ FYP WA+A+PA +LK+PLSL+ S W LTYY IG++P
Sbjct: 595 GLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTYYTIGFAP 654
Query: 650 EVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSXXXXXXXXXXXXXXSRPSM 709
RFFRQ + F + ++S+FRF+ ++ +TE + + G+ ++ +
Sbjct: 655 SAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGFIIAKDDI 714
Query: 710 PAWLKWGFWISPVTYGEIGLSVNEFLAPRWQKM-LPTNT---TIGQEILESRGLNFDGFI 765
W+ W +++SP+ YG+ + +NEFL RW T T+G+ +L+SRG + +
Sbjct: 715 RPWMTWAYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLKSRGFFTEPYW 774
Query: 766 FWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENS 825
FWI + AL G +LL N+ + LAL +L G+S+ + E K + + G V+ NS
Sbjct: 775 FWICIVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGENRGTEGSVVELNS 834
Query: 826 RSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLR 885
S NK +G MVLPF+PL++AF ++ YYVD P EM+ +G +L+LL DV G+ R
Sbjct: 835 SS----NKGPKRG-MVLPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRLQLLRDVGGAFR 889
Query: 886 PGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIH 945
PG+LTAL+GVSGAGKTTLMDVLAGRKT GY+EG I ISGYPK Q TFARVSGYCEQ DIH
Sbjct: 890 PGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFARVSGYCEQNDIH 949
Query: 946 SPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQ 1005
SP++TV ES+I+SAWLRL+ +I+ KT+ FV EV+E +EL +++S+VG+PGV+GLSTEQ
Sbjct: 950 SPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVGLPGVDGLSTEQ 1009
Query: 1006 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIF 1065
RKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMR V+N V+TGRT+VCTIHQPSIDIF
Sbjct: 1010 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1069
Query: 1066 EAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAE 1125
E+FDEL+L+K GG++IY G LG HS +++EYFE + GVPKI + YNPATW+++VT+ S E
Sbjct: 1070 ESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATWMLDVTTPSME 1129
Query: 1126 AELCVDFAQIFRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHL 1185
+++ +DFAQIF S LY N+EL+K L+TPPPGSKD++F T+++++F Q K+C WK +
Sbjct: 1130 SQMSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQTKACFWKQYW 1189
Query: 1186 SYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCS 1245
SYWR P YN +R + T +LFG++FW G K +N+QDL N G+ Y AV+FLG N +
Sbjct: 1190 SYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGALNAA 1249
Query: 1246 SVIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSA 1305
+V P +A ERTV YRE AGMYS YA++QV VEI Y IQ Y +I Y MIG W+
Sbjct: 1250 TVQPAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNWTM 1309
Query: 1306 YKLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPK 1365
K W +Y M + +++ GM+L++LTPN IA I S +L+NLF+GFLIP P+IP
Sbjct: 1310 AKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPRPQIPI 1369
Query: 1366 WWIWMYYMMPTSWALNAMVTSQYGDIDKEMIVFGETK-KLSSFIQDYFGFHHDRLPITAA 1424
WW W Y+ P +W L ++TSQ GD D + + G L + +++ FGF HD LP+ A
Sbjct: 1370 WWRWYYWATPVAWTLYGLITSQVGDKDSMVHISGIGDIDLKTLLKEGFGFEHDFLPVVAV 1429
Query: 1425 VLIIYPLVLAFLFAFCIERLNFLRR 1449
V I + L+ F+FA+ I+ LNF RR
Sbjct: 1430 VHIAWILLFLFVFAYGIKFLNFQRR 1454
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3820 (1349.8 bits), Expect = 0., P = 0.
Identities = 729/1369 (53%), Positives = 991/1369 (72%)
Query: 89 VIDVTKLGALERHVFIEKLIKHIEHDNLQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAK 148
++DVTKLG +R FI+ + K E DN + L K R R+D+V IKLPT+EVR++ + +EA
Sbjct: 65 LVDVTKLGVDDRQKFIDSIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEAN 124
Query: 149 CEVVHGK-PLPTLWNSFKGMISVLPKLSGYKSLEA-KINILNHVSGILKPGRMTLLLGPP 206
C + GK LPTL N+ + +L G+ + K+ IL VSGI+KP RMTLLLGPP
Sbjct: 125 CHI--GKRALPTLPNAALNIAERGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGPP 182
Query: 207 GCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETV 266
GK+T L AL+G LD SLKVTG V+YNG+ LEEFVP KTSAYISQND+H+ MTV+ET+
Sbjct: 183 SSGKTTLLLALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETL 242
Query: 267 DFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILG 326
DFSARCQGVG+R + + E+ RREK+AGI+P+P++D +MK+I+ VK +L TDY L+ILG
Sbjct: 243 DFSARCQGVGTRYDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILG 302
Query: 327 LDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQ 386
LD+C DT+VG+ M RGISGGQKKR+TTGEMIVGPTK LFMDEI+ GLDSST YQI+ C+Q
Sbjct: 303 LDICKDTVVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQ 362
Query: 387 QLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERK 446
++V TD+T L+SLLQPAPETF+LFDDIIL++EG+IVY GP+DHVL FFE CGF+CP+RK
Sbjct: 363 EIVRFTDATVLMSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRK 422
Query: 447 GVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLVPYDKSKS 506
G +DFLQEV SRKDQ Q+W ++ PYSY SV FSK+F+ + L+++L VPYD+ KS
Sbjct: 423 GTADFLQEVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKS 482
Query: 507 PKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRME 566
++ F +S+ + +LFK C RELLLM+RN+F Y+ KT Q+I++A +A TV+LRT M
Sbjct: 483 HPASLVFKKHSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMG 542
Query: 567 I-DVFHGNYYMGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATIL 625
+ G Y+G+L FS++V + +G EL++ IQRL VFYKQ++L F+P W +++P +L
Sbjct: 543 TKNESDGAVYIGALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLL 602
Query: 626 KVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAA 685
+P+S+ S+ W +TYY+IG++PE+ RF + +++F + + +FRF+A+ ++ A
Sbjct: 603 GIPISIFESVVWVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILA 662
Query: 686 MTAGSXXXXXXXXXXXXXXSRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRW--QKML 743
T G+ R +P W KW +W+SP+ Y L+VNE LAPRW Q
Sbjct: 663 NTGGALVILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWINQPSS 722
Query: 744 PTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISH 803
+T++G +LE + D +WI +G + G +L NI TLALTFL + ++S
Sbjct: 723 DNSTSLGLAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVSK 782
Query: 804 EKLAKMQESEDSSYGEPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLE 863
E + +E+ S S+S + K MVLPF PLT++F ++ YYVD P E
Sbjct: 783 ENTEE-NRAENGS-------KSKSIDV------KRGMVLPFTPLTMSFDNVNYYVDMPKE 828
Query: 864 MRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKIS 923
M+E+G + KL+LL +VTG RPGVLTALMGVSGAGKTTLMDVLAGRKT GY+EG+I+IS
Sbjct: 829 MKEQGVSKDKLQLLKEVTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRIS 888
Query: 924 GYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 983
G+PK QETFAR+SGYCEQ DIHSP +TV+ES+I+SA+LRL E+ K FV+EV+E +
Sbjct: 889 GFPKRQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFVDEVMELV 948
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
EL+++KD++VG+PG+ GLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMR V
Sbjct: 949 ELESLKDAVVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1008
Query: 1044 KNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGV 1103
+N V+TGRT+VCTIHQPSIDIFEAFDEL+LLK GG++IY GPLG++S ++IEYF+ I GV
Sbjct: 1009 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYAGPLGQNSHKIIEYFQAIHGV 1068
Query: 1104 PKIRNNYNPATWVIEVTSTSAEAELCVDFAQIFRESVLYENNRELVKQLNTPPPGSKDLH 1163
PKI+ YNPATW++EV+S +AEA+L +DFA+ ++ S LY+ N+ LVK+L+TPP G+ DL+
Sbjct: 1069 PKIKEKYNPATWMLEVSSMAAEAKLEIDFAEHYKTSSLYQQNKNLVKELSTPPQGASDLY 1128
Query: 1164 FPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQ 1223
F TRFS++ GQFKSCLWK ++YWR+P YNL R T A+++ G +FW G K +N
Sbjct: 1129 FSTRFSQSLLGQFKSCLWKQWITYWRTPDYNLARFFFTLAAAVMLGSIFWKVGTKRENAN 1188
Query: 1224 DLFNIVGSSYLAVVFLGINNCSSVIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPY 1283
DL ++G+ Y AV+F+G+NN SSV P +A ER+V YRE A MYS YALAQV EIPY
Sbjct: 1189 DLTKVIGAMYAAVLFVGVNNSSSVQPLIAVERSVFYRERAAEMYSALPYALAQVVCEIPY 1248
Query: 1284 LLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILS 1343
+LIQ Y +I Y M+ + W+ K FW ++ F + +++ Y GM+ V+LTPN +A++ +
Sbjct: 1249 VLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSFMSFLYFTYYGMMTVALTPNQQVAAVFA 1308
Query: 1344 SVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWALNAMVTSQYGDIDKEMIVFGETKK 1403
Y LFNLF+GF+IP P+IPKWWIW Y++ P +W + ++ SQYGD++ + V G
Sbjct: 1309 GAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGMAND 1368
Query: 1404 --LSSFIQDYFGFHHD-RLPITAAVLIIYPLVLAFLFAFCIERLNFLRR 1449
+ +I++++G+ D +PI A VL+ + L AF+FAF I LNF +R
Sbjct: 1369 PTIKWYIENHYGYDADFMIPI-ATVLVGFTLFFAFMFAFGIRTLNFQQR 1416
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3814 (1347.7 bits), Expect = 0., P = 0.
Identities = 753/1441 (52%), Positives = 1002/1441 (69%)
Query: 22 RSLRSSFRLPTXXXXXXXXXXXRKEDTDVEHALLWAEIERLPTYDRLKASLFD---VNSH 78
+S R F PT R+E+ DVE L WA +ERLPTYDRL+ + VN
Sbjct: 32 KSFRDVFAPPTDDVFGRSD---RREEDDVE--LRWAALERLPTYDRLRKGMLPQTMVNGK 86
Query: 79 GNLVDNQGKLVIDVTKLGALERHVFIEKLIKHIEHDNLQLLWKIRKRVDKVGIKLPTIEV 138
L D +DVT L E+ +E ++K +E DN + L ++R+R D+VGI++P IEV
Sbjct: 87 IGLED------VDVTNLAPKEKKHLMEMILKFVEEDNEKFLRRLRERTDRVGIEVPKIEV 140
Query: 139 RYKNLCVEAKCEVVHGKPLPTLWNSFKGMI-SVLPKLSGYKSLEAKINILNHVSGILKPG 197
RY+NL VE + LPTL+N I S+L S + KI IL +SGI+KP
Sbjct: 141 RYENLSVEGDVRSA-SRALPTLFNVTLNTIESILGLFHLLPSKKRKIEILKDISGIIKPS 199
Query: 198 RMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHI 257
RMTLLLGPP GK+T L+AL+G LD +L+++G ++Y G++ EFVP KT AYISQ+DLH
Sbjct: 200 RMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHF 259
Query: 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQ 317
EMTVRE++DFS RC GVG+R + + E+SRRE+EAGI PDP+ID +MK+I++ G + +L
Sbjct: 260 GEMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSLV 319
Query: 318 TDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSST 377
TDY+LK+LGLD+CADT+VG+ MRRGISGGQ+KRLTTGEM+VGP ALFMDEI+ GLDSST
Sbjct: 320 TDYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSST 379
Query: 378 AYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFED 437
+QI ++QLVHI D T +ISLLQPAPETF+LFDDIIL++EG+IVY G +D+VL FFE
Sbjct: 380 TFQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEY 439
Query: 438 CGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEEL 497
GF+CPERKG++DFLQEV S+KDQ Q+W E PYSY SV FS F ++L E
Sbjct: 440 MGFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEF 499
Query: 498 LVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAM 557
VPYDK+K+ A+ Y +S +LFKAC RE LLM+RNSFVYVFKT Q+ +++ +AM
Sbjct: 500 RVPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAM 559
Query: 558 TVFLRTRMEID-VFHGNYYMGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAW 616
TV+ RT M + V G + G+L+FSL+ L+ +GM EL+ T+ RL VF+KQ++ FYP W
Sbjct: 560 TVYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPW 619
Query: 617 AYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMA 676
A+A+P +LK+PLSL+ S+ W LTYY IG++P RFFRQ + F + ++S+FRF+
Sbjct: 620 AFALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLG 679
Query: 677 SVFQTEFAAMTAGSXXXXXXXXXXXXXXSRPSMPAWLKWGFWISPVTYGEIGLSVNEFLA 736
++ +TE A + G+ S+ +P+WL W ++ SP+ YG+ L +NEFL
Sbjct: 680 ALGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLD 739
Query: 737 PRWQKMLPTNTT------IGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTF 790
RW P N T +G+ +L+SRG + + FWI +GAL G +L N + +AL +
Sbjct: 740 ERWGS--PNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMY 797
Query: 791 LKSSGSSRVM-ISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKESYKGRMVLPFEPLTV 849
L G+S+ + E K + S + G V+ S T+ K MVLPF+PL++
Sbjct: 798 LNPLGNSKATTVVEEGKDKHKGSHSGTGGSVVELTS-----TSSHGPKKGMVLPFQPLSL 852
Query: 850 AFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG 909
AF ++ YYVD P EM+ +G +L+LL DV G+ RPGVLTAL+GVSGAGKTTLMDVLAG
Sbjct: 853 AFNNVNYYVDMPAEMKAQGVEGDRLQLLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAG 912
Query: 910 RKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINS 969
RKT GYVEG I ISGYPK Q TFARVSGYCEQ DIHSP++TV ES+I+SAWLRL+ +I++
Sbjct: 913 RKTGGYVEGSINISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDT 972
Query: 970 KTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 1029
KT+ FV EV+E +EL +++S+VG+PGV+GLSTEQRKRLTIAVELVANPSIIFMDEPT+
Sbjct: 973 KTREMFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1032
Query: 1030 GLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKH 1089
GLDARAAAIVMR V+N V+TGRT+VCTIHQPSIDIFE+FDEL+L+K GG++IY G LG H
Sbjct: 1033 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHH 1092
Query: 1090 SSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQIFRESVLYENNRELV 1149
S +++EYFE I GVPKI++ YNPATW+++VT+ S E+++ VDFAQIF S + N+EL+
Sbjct: 1093 SQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMESQMSVDFAQIFVNSSVNRRNQELI 1152
Query: 1150 KQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIMHTATASLLFG 1209
K+L+TPPPGS DL+F T++++ F Q K+C WK++ S WR P YN +R + T +LFG
Sbjct: 1153 KELSTPPPGSNDLYFRTKYAQPFSTQTKACFWKMYWSNWRYPQYNAIRFLMTVVIGVLFG 1212
Query: 1210 VLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARERTVMYREGFAGMYSP 1269
+LFW G K++ +QDL N G+ Y AV+FLG N ++V P VA ERTV YRE AGMYS
Sbjct: 1213 LLFWQTGTKIEKEQDLNNFFGAMYAAVLFLGATNAATVQPAVAIERTVFYREKAAGMYSA 1272
Query: 1270 WAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFCTMMFYNYLGMLL 1329
YA++QV VEI Y IQ Y +I Y MIGY W+ K FW +Y M +++ GM+L
Sbjct: 1273 IPYAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMML 1332
Query: 1330 VSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWALNAMVTSQYG 1389
V+LTPN IA I S + +NLF+GFLIP P+IP WW W Y+ P +W L ++TSQ G
Sbjct: 1333 VALTPNYQIAGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVG 1392
Query: 1390 DIDKEMIVFGE-TKKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAFLFAFCIERLNFLR 1448
D D + + G L + +++ FGF +D LP+ A V I + L+ F FA+ I+ LNF R
Sbjct: 1393 DRDSIVHITGVGDMSLKTLLKNGFGFDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQR 1452
Query: 1449 R 1449
R
Sbjct: 1453 R 1453
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3775 (1333.9 bits), Expect = 0., P = 0.
Identities = 737/1408 (52%), Positives = 987/1408 (70%)
Query: 45 KEDTDVEHALLWAEIERLPTYDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFI 104
+E+ D E AL WA +E+LPT+DRL+ + + G ++ ID+ KLG + +
Sbjct: 34 REEDD-EEALRWAALEKLPTFDRLRKGILTASHAGGPINE-----IDIQKLGFQDTKKLL 87
Query: 105 EKLIKHIEHDNLQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSF 164
E+LIK + ++ +LLWK++KR+D+VGI LPTIEVR+ +L VEA+ V G+ LPT N
Sbjct: 88 ERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHV-GGRALPTFVNFI 146
Query: 165 KGMIS-VLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDP 223
L L + + K ILN VSGI+KPGRM LLLGPP GK+T L AL+G LD
Sbjct: 147 SNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTLLLALAGKLDQ 206
Query: 224 SLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMM 283
LK TG V+YNG+ + EFVP +T+AYI QND+HI EMTVRET ++AR QGVGSR + +
Sbjct: 207 ELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQGVGSRYDMLT 266
Query: 284 EVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343
E++RREKEA I PDPDID +MKA+S G K + TDYILKILGL+VCADTMVG+ M RGI
Sbjct: 267 ELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADTMVGDDMLRGI 326
Query: 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQP 403
SGGQKKR+TTGEM+VGP++ALFMDEI+ GLDSST YQI+ ++ VHI + TALISLLQP
Sbjct: 327 SGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFNGTALISLLQP 386
Query: 404 APETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQ 463
APETF+LFDDIIL+AEG+I+Y GP+DHV+ FFE GF+CP RKGV+DFLQEV S+KDQ Q
Sbjct: 387 APETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQEVTSKKDQMQ 446
Query: 464 FWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWEL 523
+W + PY + V F++ F+ + +++ +EL +P+DK+KS A++ Y + EL
Sbjct: 447 YWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTTKKYGVGIKEL 506
Query: 524 FKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDV-FHGNYYMGSLYFS 582
K SRE LLM+RNSFVY FK QL+++A + MT+F RT M+ G+ Y G+L+F
Sbjct: 507 VKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDGSLYTGALFFI 566
Query: 583 LVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTY 642
L++L+ +GM ELSMTI +L VFYKQ++L FYPAW Y++P +LK+P+S + + T +TY
Sbjct: 567 LMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFMEAALTTFITY 626
Query: 643 YVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSXXXXXXXXXXXX 702
YVIG+ P V R F+Q+ILL + + ++F+ +A++ + A T G+
Sbjct: 627 YVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFAMLVFFALGGV 686
Query: 703 XXSRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRWQKMLPTNT-TIGQEILESRGLNF 761
SR + W WG+WISP+ YG+ + NEF W + + ++ T+G L+SRG
Sbjct: 687 VLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLGVTFLKSRGFLP 746
Query: 762 DGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPV 821
+ +WI GAL G +L N GFTLALTFL S G + +I+ E + E + S+ E V
Sbjct: 747 HAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDETELQ-SARSEGV 805
Query: 822 KENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVT 881
E NK+ +G MVLPFEP ++ F ++ Y VD P EM E+G + +L LL V
Sbjct: 806 VEAG-----ANKK--RG-MVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVN 857
Query: 882 GSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQ 941
G+ RPGVLTALMGVSGAGKTTLMDVLAGRKT GY++G I ISGYPK Q+TFAR+SGYCEQ
Sbjct: 858 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQ 917
Query: 942 TDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGL 1001
TDIHSP++TV ES+++SAWLRL E++ + F+ EV+E +EL ++ +LVG+PG +GL
Sbjct: 918 TDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGL 977
Query: 1002 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPS 1061
STEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMR V+N V+TGRT+VCTIHQPS
Sbjct: 978 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1037
Query: 1062 IDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTS 1121
IDIFEAFDEL LLK GG IY GPLG S+ +I YFE I G+ KI YNPATW++EV++
Sbjct: 1038 IDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVST 1097
Query: 1122 TSAEAELCVDFAQIFRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLW 1181
TS EA L VDFAQ+++ S LY+ N+EL+K+L+ P PGSKDL+FPT++S++F Q + LW
Sbjct: 1098 TSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLW 1157
Query: 1182 KLHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGI 1241
K H SYWR+P Y +R + T +L+FG +FWD G K +QDL N +GS Y AV+FLG+
Sbjct: 1158 KQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGL 1217
Query: 1242 NNCSSVIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGY 1301
N +SV P V ERTV YRE AGMYS YA AQV +EIPY+L+QA+ Y +I Y MIG+
Sbjct: 1218 QNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGF 1277
Query: 1302 YWSAYKLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGP 1361
W+A K FW + M+ + + + + GM+ V++TPN IAS++SS Y ++NLF+GFLIP P
Sbjct: 1278 EWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRP 1337
Query: 1362 KIPKWWIWMYYMMPTSWALNAMVTSQYGDIDKEMIVFGETKKLSSFIQDYFGFHHDRLPI 1421
+P WW W Y++ P +W L ++ SQ+GDI + M + FI++++G+ L +
Sbjct: 1338 SMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMA--DSNMSVKQFIREFYGYREGFLGV 1395
Query: 1422 TAAVLIIYPLVLAFLFAFCIERLNFLRR 1449
AA+ +I+PL+ A +FA I+ NF +R
Sbjct: 1396 VAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3544 (1252.6 bits), Expect = 0., P = 0.
Identities = 672/1413 (47%), Positives = 973/1413 (68%)
Query: 45 KEDTDVEHALLWAEIERLPTYDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFI 104
K++ + E L WA ++RLPTY R++ +F ++V + I + L A E+ + +
Sbjct: 16 KDEIEDEEELRWAALQRLPTYSRIRRGIFR-----DMVGEPKE--IQIGNLEASEQRLLL 68
Query: 105 EKLIKHIEHDNLQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSF 164
++L+ +E+D Q ++RKR D V +K P IEVR++NL VE+ V + LPT+ N
Sbjct: 69 DRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHV-GSRALPTIPNFI 127
Query: 165 KGMIS-VLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDP 223
M +L + K+ IL+ +SG+++P R+TLLLGPP GK+T L AL+G L
Sbjct: 128 INMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLALAGRLGT 187
Query: 224 SLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMM 283
+L+ +G+++YNGY L+E + P+TSAY+SQ D H+AEMTVR+T++F+ RCQGVG + + ++
Sbjct: 188 NLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVGFKYDMLL 247
Query: 284 EVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343
E++RREK AGIVPD D+D +MK++++ G++ +L +Y++KILGLD CADT+VG+ M +GI
Sbjct: 248 ELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVGDEMIKGI 307
Query: 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQP 403
SGGQKKRLTTGE++VGP + LFMDEI+NGLDSST +QII ++ H + T +ISLLQP
Sbjct: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTTVISLLQP 367
Query: 404 APETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQ 463
+PET++LFDD+ILM+EG+I+Y GP+D VL FF GF CP+RK V+DFLQEV S+KDQ Q
Sbjct: 368 SPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVTSKKDQQQ 427
Query: 464 FWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWEL 523
+W PY Y F++ F+ P KKL ++L VP+DK + A+S S Y + + EL
Sbjct: 428 YWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQYGVKKSEL 487
Query: 524 FKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFH-GNYYMGSLYFS 582
K + + LM++N+F+YVFK QL+++A + MTVF RT M + GN Y+GSLYFS
Sbjct: 488 LKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIYLGSLYFS 547
Query: 583 LVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTY 642
+V++L +G E+ M + +L V YK ++L FYP+WAY +P+ +L +P S++ S W +TY
Sbjct: 548 MVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESATWVAVTY 607
Query: 643 YVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSXXXXXXXXXXXX 702
Y IGY P RF +QF+L F+ H S+ +FR M S+ + A T GS
Sbjct: 608 YTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLVVMTLGGF 667
Query: 703 XXSRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRWQKMLPTNTT--IGQEILESRGLN 760
SR S+P+W WG+WISP+ Y + SVNEFL WQK +T+ +G +L+ R L
Sbjct: 668 IISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLALLKERSLF 727
Query: 761 FDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQES-EDSSYGE 819
+ +WI + AL G +L NI FTL L L G + ++S E+L + ++ + +
Sbjct: 728 SGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDEREKKRKGDEFVV 787
Query: 820 PVKENSRSTPMTNKESYKGR-MVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLY 878
++E + + + + +K R MVLPF+PL+++F ++ YYVD PL ++E+G + +L+LL
Sbjct: 788 ELREYLQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILEDRLQLLV 847
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGY 938
++TG+ RPGVLTAL+GVSGAGKTTLMDVLAGRKT G +EG++ ISG+PK QETFAR+SGY
Sbjct: 848 NITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQETFARISGY 907
Query: 939 CEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGV 998
CEQ D+HSP +TV ES++FSA LRL +I+S+T+ FV+EV+E +EL ++ +LVG+PGV
Sbjct: 908 CEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSLSGALVGLPGV 967
Query: 999 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIH 1058
+GLSTEQRKRLTIAVELVANPSI+FMDEPT+GLDARAAAIVMR V+NIVNTGRTIVCTIH
Sbjct: 968 DGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1027
Query: 1059 QPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIE 1118
QPSIDIFE+FDEL+ +K GG +IY GPLG+ S ++I+YFE I GV KI+ +NPA W+++
Sbjct: 1028 QPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQKIKPGHNPAAWMLD 1087
Query: 1119 VTSTSAEAELCVDFAQIFRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKS 1178
VT+++ E L VDFA+I+R S L + N+EL++ L+ P +K++ FPTR+S++ + QF +
Sbjct: 1088 VTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKEIEFPTRYSQSLYSQFVA 1147
Query: 1179 CLWKLHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVF 1238
CLWK +LSYWR+P Y +R +T SL+ G + W G K D QQ LFN +GS Y AV+F
Sbjct: 1148 CLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKRDTQQQLFNAMGSMYAAVLF 1207
Query: 1239 LGINNCSSVIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPM 1298
+GI N ++ P V+ ER V YRE AGMYS +A AQV +E PY+L Q+ Y I Y M
Sbjct: 1208 IGITNATAAQPVVSIERFVSYRERAAGMYSALPFAFAQVFIEFPYVLAQSTIYSTIFYAM 1267
Query: 1299 IGYYWSAYKLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLI 1358
+ WSA K W + M+ ++M++ + GM+ ++TPN +ASI+++ Y L+NLF+GF+I
Sbjct: 1268 AAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNVASIIAAPFYMLWNLFSGFMI 1327
Query: 1359 PGPKIPKWWIWMYYMMPTSWALNAMVTSQYGDIDKEMIVFGETKKL--SSFIQDYFGFHH 1416
P +IP WW W Y+ P +W L ++ SQYGD ++ + + ++ ++D G+ H
Sbjct: 1328 PYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVMVKQLLEDVMGYKH 1387
Query: 1417 DRLPITAAVLIIYPLVLAFLFAFCIERLNFLRR 1449
D L ++A +++ + + + +FAF I+ NF RR
Sbjct: 1388 DFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3433 (1213.5 bits), Expect = 0., P = 0.
Identities = 688/1418 (48%), Positives = 947/1418 (66%)
Query: 51 EHALLWAEIERLP-----TYDR-LKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFI 104
E L WA I RLP T++ L+ S + G D IDV KL +R + +
Sbjct: 35 EEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSG-YADGNVVQTIDVKKLDRADREMLV 93
Query: 105 EKLIKHIEHDNLQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHG-KPLPTLWNS 163
+ + + DN +LL I++R+D+VG+++P IEVR++NL +EA +V G + LPTL N
Sbjct: 94 RQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEA--DVQAGTRALPTLVNV 151
Query: 164 FKGMIS-VLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD 222
+ L L K + K+NIL +SGI+KPGRMTLLLGPPG GKST L AL+G LD
Sbjct: 152 SRDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGKLD 211
Query: 223 PSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSR-EET 281
SLK TG ++YNG L +F +TSAYISQ D HIAE+TVRET+DF+ARCQG
Sbjct: 212 KSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEGFAGY 271
Query: 282 MMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341
M +++R EKE GI P +ID +MKA SVKG K ++ TDY+LK+LGLDVC+DTMVGN M R
Sbjct: 272 MKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMMR 331
Query: 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLL 401
G+SGGQ+KR+TTGEM VGP K LFMDEI+ GLDSST +QI+ CI+ VH+ D+T L++LL
Sbjct: 332 GVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHLMDATVLMALL 391
Query: 402 QPAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQ 461
QPAPETFDLFDD+IL++EG +VY GP++ V+AFFE GFR P RKGV+DFLQEV S+KDQ
Sbjct: 392 QPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADFLQEVTSKKDQ 451
Query: 462 AQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRW 521
AQ+W PY + V + F+ S D +L P+DK + +A+ + +++S W
Sbjct: 452 AQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSALCRTKFAISGW 511
Query: 522 ELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRME--IDVFHGNYYMGSL 579
E K C RELLL++R+ F+Y F+T Q+ + + TVFL+TR+ + F GN Y+ L
Sbjct: 512 ENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQF-GNEYLSCL 570
Query: 580 YFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTC 639
+F LV ++ +G EL + I RL VFYKQ++ F+PAW+++I + +L+VP S++ ++ W+
Sbjct: 571 FFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYSVLEAVVWSG 630
Query: 640 LTYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSXXXXXXXXX 699
+ Y+ +G +P RFFR +LLF+ H ++ +FR MAS+ + A T GS
Sbjct: 631 VVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGSAAILIVFLL 690
Query: 700 XXXXXSRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRWQKMLPT---NTTIGQEILES 756
+ + W WGFW+SP++YG+ ++VNEF A RW M P+ +TTIG +L+
Sbjct: 691 GGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRW--MTPSAISDTTIGLNLLKL 748
Query: 757 RGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSS 816
R + + +WI + L G A+L N TLAL +L +R ++
Sbjct: 749 RSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVV--------------- 793
Query: 817 YGEPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRL 876
+P +E + S K M+LPF+PLT+ F ++ YYVD P EMR +G + +L+L
Sbjct: 794 LDDPNEETALVADANQVISEKKGMILPFKPLTMTFHNVNYYVDMPKEMRSQGVPETRLQL 853
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVS 936
L +V+G PGVLTAL+G SGAGKTTLMDVLAGRKT GY EG+I+ISG+PK Q+TFAR+S
Sbjct: 854 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYTEGDIRISGHPKEQQTFARIS 913
Query: 937 GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIP 996
GY EQ DIHSP +TVEES+ FSA LRL EI + K EFV +V+ +ELD ++ +LVG+P
Sbjct: 914 GYVEQNDIHSPQVTVEESLWFSASLRLPKEITKEQKKEFVEQVMRLVELDTLRYALVGLP 973
Query: 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCT 1056
G GLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMR V+N V+TGRT+VCT
Sbjct: 974 GTTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1033
Query: 1057 IHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWV 1116
IHQPSIDIFEAFDEL+L+K GG++IY G LG HS +++YF+GI+GVP I + YNPATW+
Sbjct: 1034 IHQPSIDIFEAFDELLLMKRGGQVIYGGKLGTHSQVLVDYFQGINGVPPISSGYNPATWM 1093
Query: 1117 IEVTSTSAEAELCVDFAQIFRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQF 1176
+EVT+ + E + ++FA ++++S + +KQL+ PP GS+ + F +R+S+N QF
Sbjct: 1094 LEVTTPALEEKYNMEFADLYKKSDQFREVEANIKQLSVPPEGSEPISFTSRYSQNQLSQF 1153
Query: 1177 KSCLWKLHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAV 1236
CLWK +L YWRSP YNL+R++ T A+ + G +FWD G K + QDL ++G+ Y A
Sbjct: 1154 LLCLWKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWDIGSKRTSSQDLITVMGALYSAC 1213
Query: 1237 VFLGINNCSSVIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGY 1296
+FLG++N SSV P V+ ERTV YRE AGMY+P YA AQ VEIPY+L Q + Y +I Y
Sbjct: 1214 LFLGVSNASSVQPIVSIERTVFYREKAAGMYAPIPYAAAQGLVEIPYILTQTILYGVITY 1273
Query: 1297 PMIGYY--WSAYKLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFA 1354
IG+ +S + L+ F MF T ++ + GM+ V LTPN +A+++SS Y+L+NL +
Sbjct: 1274 FTIGFERTFSKFVLYLVF--MFLTFTYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLLS 1331
Query: 1355 GFLIPGPKIPKWWIWMYYMMPTSWALNAMVTSQYGDIDK---EMIVFGETKKLSSFIQDY 1411
GFL+ P IP WWIW YY+ P +W L ++ SQ GD++ E + G K+ FI+ Y
Sbjct: 1332 GFLVQKPLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMINEPLFHGTVKE---FIEYY 1388
Query: 1412 FGFHHDRLPITAAVLIIYPLVLAFLFAFCIERLNFLRR 1449
FG+ + + ++AAVL+ + + FA ++ LNF RR
Sbjct: 1389 FGYKPNMIGVSAAVLVGFCALFFSAFALSVKYLNFQRR 1426
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2070 (733.7 bits), Expect = 3.3e-214, P = 3.3e-214
Identities = 397/728 (54%), Positives = 522/728 (71%)
Query: 741 KMLPTNTTI--GQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSR 798
KM +N+TI G +L + + +WIS+GAL L NI FTLALT+L G
Sbjct: 743 KMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKA 802
Query: 799 VMISHEKLAKMQESED-----------SSYGEP----VKENSRSTPMTNKESYKGRMVLP 843
++ E+ + +D + GE + +S + + KG MVLP
Sbjct: 803 GLLPEEENEDADQGKDPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAGNKKG-MVLP 861
Query: 844 FEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTL 903
F PL ++F D+KY+VD P EMR++G + +L+LL VTG+ RPGVLTALMGVSGAGKTTL
Sbjct: 862 FTPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTL 921
Query: 904 MDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRL 963
MDVLAGRKT GY+EG+++ISG+PKVQETFAR+SGYCEQTDIHSP +TV ES+IFSA+LRL
Sbjct: 922 MDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRL 981
Query: 964 APEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIF 1023
E+ K FV++V+E +ELD+++DS+VG+PGV GLSTEQRKRLTIAVELVANPSIIF
Sbjct: 982 PKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIF 1041
Query: 1024 MDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYC 1083
MDEPT+GLDARAAAIVMRAV+N V+TGRT+VCTIHQPSIDIFEAFDEL+L+K GG++IY
Sbjct: 1042 MDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYA 1101
Query: 1084 GPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQIFRESVLYE 1143
GPLG++S +V+EYFE GV KI YNPATW++E +S +AE +L VDFA+++ +S L++
Sbjct: 1102 GPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQ 1161
Query: 1144 NNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIMHTAT 1203
N+ LVK+L+ PP G+ DL+F T+FS+N WGQFKSCLWK +YWRSP YNL+R + T
Sbjct: 1162 RNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLA 1221
Query: 1204 ASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARERTVMYREGF 1263
SLL G +FW G N DL ++G+ Y A++F+GINNCS+V P VA ERTV YRE
Sbjct: 1222 TSLLIGTVFWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRERA 1281
Query: 1264 AGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFCTMMFYN 1323
AGMYS YA++QVT E+PY+LIQ + Y +I Y M+G+ W A K FW + + + +++
Sbjct: 1282 AGMYSAMPYAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWT 1341
Query: 1324 YLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWALNAM 1383
Y GM+ VSLTPN +ASI +S Y +FNLF+GF IP PKIPKWWIW Y++ P +W + +
Sbjct: 1342 YYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGL 1401
Query: 1384 VTSQYGDIDKEMIVFGETKKLS--SFIQDYFGFHHDRLPITAAVLIIYPLVLAFLFAFCI 1441
+ SQYGD++ + V G L+ +I+D++GF D + AAVLI + + AF+FAFCI
Sbjct: 1402 IVSQYGDVETRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCI 1461
Query: 1442 ERLNFLRR 1449
LNF R
Sbjct: 1462 RTLNFQTR 1469
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5140 | 0.9772 | 0.9691 | N/A | no |
| Q5Z9S8 | PDR12_ORYSJ | No assigned EC number | 0.5176 | 0.9661 | 0.9333 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.5287 | 0.9730 | 0.9784 | N/A | no |
| Q9LFH0 | AB37G_ARATH | No assigned EC number | 0.6746 | 0.9972 | 0.9965 | yes | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.5209 | 0.9737 | 0.9839 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.5148 | 0.9730 | 0.9818 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.5227 | 0.9675 | 0.9622 | N/A | no |
| Q7FMW4 | PDR15_ORYSJ | No assigned EC number | 0.5108 | 0.9848 | 0.9456 | yes | no |
| Q8GU89 | PDR4_ORYSJ | No assigned EC number | 0.5179 | 0.9772 | 0.9765 | yes | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.7146 | 0.9972 | 0.9986 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| fgenesh2_kg.5__1717__AT3G53480.1 | annotation not avaliable (1450 aa) | ||||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1449 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-95 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 9e-92 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 8e-77 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-73 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-60 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-52 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-51 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 3e-48 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 8e-45 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 6e-41 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-40 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-38 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 7e-38 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-35 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-30 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-29 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-28 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-28 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-27 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-27 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-23 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 6e-23 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-22 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-21 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 2e-21 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-21 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 8e-21 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-20 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-20 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-20 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 9e-20 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-19 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-19 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-19 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-19 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-19 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 8e-19 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-18 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-18 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-18 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-18 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 5e-18 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-18 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 6e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 8e-18 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-17 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-17 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-17 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-17 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-17 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-17 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-17 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-17 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-17 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 8e-17 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 8e-17 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-16 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-16 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 5e-16 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-16 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 8e-16 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-15 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-15 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-15 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-15 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-15 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 4e-15 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-15 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 6e-15 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 7e-15 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 8e-15 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-14 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-14 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-14 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-14 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-14 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-14 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-14 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-14 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-14 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-14 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 6e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 7e-14 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 7e-14 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-14 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 9e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-13 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-13 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-13 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-13 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-13 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-13 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-13 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-13 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 6e-13 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 7e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-13 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 8e-13 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-12 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-12 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-12 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-12 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-12 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-12 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-12 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-12 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-12 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-12 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-12 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 5e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-12 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-12 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 7e-12 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 7e-12 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 7e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 8e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 8e-12 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 9e-12 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 9e-12 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-11 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-11 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-11 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-11 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-11 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-11 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-11 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-11 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-11 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-11 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-11 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-11 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-11 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-11 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-11 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-11 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-11 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-11 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 6e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-11 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 7e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 9e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-10 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-10 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-10 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-10 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 5e-10 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 6e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 6e-10 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-10 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 6e-10 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 7e-10 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-10 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 8e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-10 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 9e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 9e-10 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 9e-10 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-09 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-09 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-09 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-09 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-09 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-09 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-09 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-09 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-09 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-09 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-09 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-09 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-09 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-09 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-09 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-09 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-09 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 3e-09 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-09 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-09 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-09 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-09 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-09 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-09 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-09 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 7e-09 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 8e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 8e-09 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 9e-09 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-08 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-08 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-08 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-08 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-08 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-08 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-08 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-08 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-08 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-08 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-08 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-08 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-08 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-08 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-08 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-08 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-08 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-08 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-08 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-08 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-08 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-08 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-08 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 4e-08 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-08 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-08 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 5e-08 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-08 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 6e-08 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-08 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 7e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 8e-08 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 9e-08 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-07 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-07 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-07 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-07 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 1e-07 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-07 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-07 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-07 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-07 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-07 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-07 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-07 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-07 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-07 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-07 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-07 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-07 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-07 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-07 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-07 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-07 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-07 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 6e-07 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-07 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 7e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 7e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 7e-07 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-07 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 8e-07 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 8e-07 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 9e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 9e-07 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-06 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-06 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-06 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-06 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-06 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-06 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-06 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-06 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-06 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-06 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-06 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-06 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 4e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-06 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 5e-06 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-06 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 5e-06 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 5e-06 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-06 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 6e-06 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 6e-06 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 6e-06 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 7e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 7e-06 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 8e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 8e-06 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 8e-06 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 8e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 9e-06 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 9e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-05 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-05 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-05 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-05 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-05 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-05 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-05 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-05 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-05 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-05 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-05 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-05 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-05 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-05 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-05 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-05 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 4e-05 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 4e-05 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-05 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-05 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-05 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 5e-05 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 5e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-05 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 5e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-05 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 6e-05 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 6e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-05 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 7e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 7e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 7e-05 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 8e-05 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 8e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-05 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 9e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 9e-05 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-04 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-04 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-04 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 1e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-04 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-04 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-04 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-04 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 2e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-04 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-04 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-04 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-04 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-04 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 3e-04 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-04 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-04 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-04 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-04 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 4e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 4e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 6e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 6e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 6e-04 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 7e-04 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 7e-04 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 8e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 8e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 8e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 9e-04 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 0.001 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 0.001 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.001 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 0.001 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 0.001 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 0.001 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 0.001 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 0.001 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 0.001 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.001 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.001 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.001 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.001 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 0.001 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 0.002 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 0.002 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 0.002 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.002 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.002 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.002 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.002 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.002 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 0.002 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 0.002 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 0.003 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 0.003 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.003 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 0.003 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 0.003 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 0.003 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.003 | |
| TIGR00602 | 637 | TIGR00602, rad24, checkpoint protein rad24 | 0.003 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 0.003 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 0.004 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 0.004 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 0.004 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 0.004 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 0.004 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1838 bits (4763), Expect = 0.0
Identities = 788/1474 (53%), Positives = 1055/1474 (71%), Gaps = 48/1474 (3%)
Query: 11 ESVRIELAEIGRSLRSSFRLPTSSYRSSSAISSRKEDTDVEHALLWAEIERLPTYDRLKA 70
S+ ++ R++ F + S R +S S ED E AL WA IE+LPTY RL+
Sbjct: 10 RSISRSVSRSSRNMEDVFSGGSQSRRRTS---SVDED---EEALKWAAIEKLPTYSRLRT 63
Query: 71 SLFDVNSHGNLVDNQGKLV----IDVTKLGALERHVFIEKLIKHIEHDNLQLLWKIRKRV 126
S+ + S D G + +DVTKL +R FI+ + K E DN + L K R R+
Sbjct: 64 SI--MKSFVE-NDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRI 120
Query: 127 DKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYK-SLEAKIN 185
D+VGIKLPT+EVR+++L VEA C + + LPTL N+ + + + G + + K+
Sbjct: 121 DRVGIKLPTVEVRFEHLTVEADCYI-GSRALPTLPNAARNIAESALGMLGINLAKKTKLT 179
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
IL SGI+KP RMTLLLGPP GK+T L AL+G LDPSLKV+GE++YNGY+L EFVP K
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRK 239
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
TSAYISQND+H+ MTV+ET+DFSARCQGVG+R + + E++RREK+AGI P+ ++D +MK
Sbjct: 240 TSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMK 299
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
A +++GVK +L TDY LKILGLD+C DT+VG+ M RGISGGQKKR+TTGEMIVGPTK LF
Sbjct: 300 ATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLF 359
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYH 425
MDEI+ GLDSST YQI+ C+QQ+VH+T++T L+SLLQPAPETFDLFDDIIL++EG+IVY
Sbjct: 360 MDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQ 419
Query: 426 GPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFK 485
GP+DH+L FFE CGF+CPERKG +DFLQEV S+KDQ Q+W PY Y SV F+++FK
Sbjct: 420 GPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFK 479
Query: 486 ESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFK 545
+ +L+ EL VP+DKS+S K A+ FS YS+ + EL KAC +E LLM+RN+FVYVFK
Sbjct: 480 SFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFK 539
Query: 546 TTQLIMLATMAMTVFLRTRM----EIDVFHGNYYMGSLYFSLVVLLVDGMPELSMTIQRL 601
T Q+I++A +A TVFLRT M E D G Y+G+L FS+++ + +G EL++ IQRL
Sbjct: 540 TVQIIIVAAIASTVFLRTEMHTRNEED---GALYIGALLFSMIINMFNGFAELALMIQRL 596
Query: 602 EVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFILL 661
VFYKQ++L F+P W + +P +L +P+S++ S+ W +TYY IG++PE RFF+Q +L+
Sbjct: 597 PVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLV 656
Query: 662 FASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISP 721
F + +FR +ASV +T A T G++V+L VFL GGF++ + +P W +W +W+SP
Sbjct: 657 FLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSP 716
Query: 722 VTYGEIGLSVNEFLAPRW-QKMLPTNTT-IGQEILESRGLNFDGFIFWISLGALFGIALL 779
++YG L+VNE APRW KM N+T +G +L + D +WI +GAL G +L
Sbjct: 717 LSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTIL 776
Query: 780 LNIGFTLALTFLKSSGSSRVMISHEKLAKMQESED-------SSYGEPVKENSRSTPMTN 832
N+ FTLALT+L G + +IS E +M+ ED S+ G +E +
Sbjct: 777 FNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNP 836
Query: 833 KESYKGR---------------MVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLL 877
+ K R MVLPF PL ++F D+ Y+VD P EM+E+G + +L+LL
Sbjct: 837 EGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLL 896
Query: 878 YDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSG 937
+VTG+ RPGVLTALMGVSGAGKTTLMDVLAGRKT GY+EG+I+ISG+PK QETFAR+SG
Sbjct: 897 REVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISG 956
Query: 938 YCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPG 997
YCEQ DIHSP +TV ES+I+SA+LRL E++ + K FV+EV+E +ELD +KD++VG+PG
Sbjct: 957 YCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPG 1016
Query: 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTI 1057
V GLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMR V+N V+TGRT+VCTI
Sbjct: 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1076
Query: 1058 HQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVI 1117
HQPSIDIFEAFDEL+L+K GG++IY GPLG++S ++IEYFE I GVPKI+ YNPATW++
Sbjct: 1077 HQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWML 1136
Query: 1118 EVTSTSAEAELCVDFAQIFRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFK 1177
EV+S +AE +L +DFA+ ++ S LY+ N+ LVK+L+TPPPG+ DL+F T++S++ WGQFK
Sbjct: 1137 EVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFK 1196
Query: 1178 SCLWKLHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVV 1237
SCLWK +YWRSP YNL+R T A+L+ G +FW G K N DL ++G+ Y AV+
Sbjct: 1197 SCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVL 1256
Query: 1238 FLGINNCSSVIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYP 1297
F+GINNCS+V P VA ERTV YRE AGMYS YA+AQV EIPY+LIQ Y +I Y
Sbjct: 1257 FVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYA 1316
Query: 1298 MIGYYWSAYKLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFL 1357
M+ + W+A K FW ++ F + +++ Y GM+ VSLTPN +A+I ++ Y LFNLF+GF
Sbjct: 1317 MVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFF 1376
Query: 1358 IPGPKIPKWWIWMYYMMPTSWALNAMVTSQYGDIDKEMIVFGETKKLS--SFIQDYFGFH 1415
IP PKIPKWW+W Y++ P +W + ++ SQYGD++ + V G + +IQD++G+
Sbjct: 1377 IPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYD 1436
Query: 1416 HDRLPITAAVLIIYPLVLAFLFAFCIERLNFLRR 1449
D + AAVL+ + + AF+FAFCI LNF R
Sbjct: 1437 PDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1109 bits (2869), Expect = 0.0
Identities = 393/1365 (28%), Positives = 658/1365 (48%), Gaps = 133/1365 (9%)
Query: 112 EHDNLQLLWKIRKRVDKVGIKLP--TIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMIS 169
E + + RK +D I + V YKNL PT N
Sbjct: 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG--VAADSDYQPTFPN-----AL 54
Query: 170 VLPKLSGYKSLEA-----KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS 224
+ G++ L+ +IL + G++KPG +T++LG PG G ST LK ++ N D
Sbjct: 55 LKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGF 114
Query: 225 LK-VTGEVSYNGYKLEEFVPPKT--SAYISQNDLHIAEMTVRETVDFSARCQGVGSREET 281
V G ++Y+G EE Y ++ D+H +TV ET+DF+ARC+ +R +
Sbjct: 115 HIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDG 174
Query: 282 MMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341
+ + D + GL +T VGN R
Sbjct: 175 VSREEYAKHI--------------------------ADVYMATYGLSHTRNTKVGNDFVR 208
Query: 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLL 401
G+SGG++KR++ E +G K D T GLDS+TA + I ++ +I D+T L+++
Sbjct: 209 GVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIY 268
Query: 402 QPAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQ 461
Q + + ++LFD +I++ EG +Y GP D +FE GF+CP+R+ +DFL + S +
Sbjct: 269 QCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-E 327
Query: 462 AQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLVPYDK---------------SKS 506
Q E + F ++ SP +L +E+ D+ +K
Sbjct: 328 RQIKPGYEKK-VPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQ 386
Query: 507 PKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRME 566
K S Y++S K C++R L M+ N +F I++A + +VF
Sbjct: 387 SKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKN 446
Query: 567 IDVFHGNYYMGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILK 626
F+ G+L+F+++ + E++ + + K ++ Y A AI + I +
Sbjct: 447 TSDFY--SRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISE 504
Query: 627 VPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAM 686
+P ++ S+ + + Y+++ + RFF ++LF +FR + +V +T AM
Sbjct: 505 IPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAM 564
Query: 687 TAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRW--QKMLP 744
T ++++L + ++ GF I RPSM W KW ++++P+ Y L VNEF R+ + +P
Sbjct: 565 TPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVP 624
Query: 745 -----TNTTIGQEILESRGLN-FDGFI----------------FWISLGALFGIALLLNI 782
N + ++ G ++ W + G + G +
Sbjct: 625 SGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFF 684
Query: 783 GFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKESYKGRMVL 842
+ L F K + ++ + + + + T +NK + VL
Sbjct: 685 VYILLTEFNKGAKQKGEILVFRRGS-----------LKRAKKAGETSASNKNDIEAGEVL 733
Query: 843 PFEPLTVAFQDLKYYVDTPLEMRERGFADR-----------KLRLLYDVTGSLRPGVLTA 891
LT D+ D E E F R K +L +V G ++PG LTA
Sbjct: 734 GSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTA 793
Query: 892 LMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITV 951
LMG SGAGKTTL++VLA R T+G + G ++ + +F R GY +Q D+H P TV
Sbjct: 794 LMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTV 853
Query: 952 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTI 1011
ES+ FSA+LR ++ K E+V EV++ +E+++ D++VG+PG GL+ EQRKRLTI
Sbjct: 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTI 912
Query: 1012 AVELVANP-SIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDE 1070
VELVA P ++F+DEPT+GLD++ A + + ++ + + G+ I+CTIHQPS +FE FD
Sbjct: 913 GVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDR 972
Query: 1071 LILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCV 1130
L+LL+ GG+ +Y G LG++S +I YFE G PK + NPA W++EV + A
Sbjct: 973 LLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPAEWMLEVIGAAPGAHANQ 1031
Query: 1131 DFAQIFRESVLYENNRELVKQLNTPPPGSKDLHFPT---RFSRNFWGQFKSCLWKLHLSY 1187
D+ +++R S Y+ + + +L ++D + P +++ + W QFK LW+ Y
Sbjct: 1032 DYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQY 1091
Query: 1188 WRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSV 1247
WR+P Y + T A+L G F+ G + Q L N + + ++A V +
Sbjct: 1092 WRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPLIQQYL 1148
Query: 1248 IPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYK 1307
P VA+ RE + +S A+ AQ+TVEIPY L+ + I Y +G+YW+A K
Sbjct: 1149 PPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASK 1208
Query: 1308 ---------LFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLI 1358
LFW MF ++++ LG +++S PN+ A++L+S+ +T+ F G L
Sbjct: 1209 TGQVHERGVLFWLLSTMF--FLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLA 1266
Query: 1359 PGPKIPKWWIWMYYMMPTSWALNAMVTSQYGDID-----KEMIVF 1398
P ++P +WI+MY P ++ + A++++ D+ KE++ F
Sbjct: 1267 PPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTF 1311
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 304 bits (782), Expect = 2e-95
Identities = 109/239 (45%), Positives = 145/239 (60%), Gaps = 47/239 (19%)
Query: 846 PLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMD 905
+ +++L Y V K +LL +++G ++PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKGG---------KRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 906 VLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAP 965
VLAGRKT+G + GEI I+G P + F R +GY EQ D+HSPN+TV E++ FSA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 966 EINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1025
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1026 EPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
EPT+GLD++AA ++R +K + ++G+ I+CTIHQPS IFE FD L+LLK GG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 310 bits (796), Expect = 9e-92
Identities = 180/596 (30%), Positives = 284/596 (47%), Gaps = 36/596 (6%)
Query: 869 FADRKLR--LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY-VEGEIKISGY 925
F + R LL +V+G +PG L A+MG SGAGKTTLM+ LA R G G + ++G
Sbjct: 31 FCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGM 90
Query: 926 PKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 985
P + +S Y +Q D+ P +TV E ++F A LR+ + K K E V+EVL+ + L
Sbjct: 91 PIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGL 150
Query: 986 DAIKDSLVGIPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
++ +G+PG V GLS +RKRL A EL+ +P ++F DEPT+GLD+ A V++ +K
Sbjct: 151 RKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLK 210
Query: 1045 NIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVP 1104
+ G+TI+CTIHQPS ++FE FD++IL+ GR+ Y G Q + +F + G P
Sbjct: 211 GLAQKGKTIICTIHQPSSELFELFDKIILM-AEGRVAYLGS----PDQAVPFFSDL-GHP 264
Query: 1105 KIRNNYNPATWVIEVTST--SAEAELCVDFAQIFR--ESVLYENNRELVKQLNTPPPGS- 1159
NYNPA + ++V + +E E +I + + L + G
Sbjct: 265 -CPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGL 323
Query: 1160 ---KDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHG 1216
+ ++ ++W QF + L + LS R P +R++ T ++L G+++ G
Sbjct: 324 VKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYL--G 381
Query: 1217 QKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARERTVMYREGFAGMYSPWAYALAQ 1276
Q L Q+ + NI G+ +L + + N VI E V RE +G+Y AY LA+
Sbjct: 382 QGLT-QKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAK 440
Query: 1277 VTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFCTMMFY--NYLGMLLVSLTP 1334
E+P +I + I Y MIG A + T++ G L+
Sbjct: 441 TIAELPLFIILPALFTSITYWMIGLRSGATHFL--TFLFLVTLVANVATSFGYLISCAFS 498
Query: 1335 NSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSW---ALNAMVTSQYGDI 1391
++ +A + F LF GF I IP ++ W+ Y SW ++ +Q+ D+
Sbjct: 499 STSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDV 555
Query: 1392 DK-EMIVFGETKKLSSF---IQDYFGFHHDRLPITAAVLIIYPLVLAFLFAFCIER 1443
D E T S I + F + L + L+I L F +
Sbjct: 556 DNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRI 611
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 8e-77
Identities = 173/645 (26%), Positives = 280/645 (43%), Gaps = 73/645 (11%)
Query: 161 WNSFKGMISVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGN 220
+ + K L L +VSG+ KPG + ++G G GK+T + AL+
Sbjct: 21 KQLVSRLRGCFCRERPRKHL------LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFR 74
Query: 221 LDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREE 280
+K +G V NG ++ SAY+ Q+DL I +TVRE + F A +
Sbjct: 75 SPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLR------- 127
Query: 281 TMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340
M K KR + D +L+ LGL CA+T +G R
Sbjct: 128 -----------------------MPRRVTKKEKR-ERVDEVLQALGLRKCANTRIGVPGR 163
Query: 341 -RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDS--TAL 397
+G+SGG++KRL ++ LF DE T+GLDS AY ++ Q L + T +
Sbjct: 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVV---QVLKGLAQKGKTII 220
Query: 398 ISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLS 457
++ QP+ E F+LFD IILMAEG++ Y G D + FF D G CPE +DF +VL+
Sbjct: 221 CTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLA 280
Query: 458 RKDQAQFWLHTELPYSYF-SVDMFSKK---FKESPLVKKLDEELLVPYDKSK---SPKNA 510
+P S S + K F S + + + + K+
Sbjct: 281 -----------VIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSEN 329
Query: 511 ISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEID-V 569
+ Y+ S W F A + R L + R+ + + Q +M A + ++L + V
Sbjct: 330 MEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGV 389
Query: 570 FHGNYYMGSLYFSLVVLLVDGM-PELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVP 628
+ N G+L+ L + + P +++ L VF ++ Y AY + TI ++P
Sbjct: 390 QNIN---GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELP 446
Query: 629 LSLVASLAWTCLTYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTA 688
L ++ +T +TY++IG F L+ + S ++ F + A+T
Sbjct: 447 LFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTV 506
Query: 689 GSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRWQKMLPTNTT 748
G ++ LFGGF I+ S+P + KW ++S YG GL +N++ + NTT
Sbjct: 507 GPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTT 566
Query: 749 I-----GQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLAL 788
G+ ILE+ L+F ++ L L + + AL
Sbjct: 567 GPCPSSGEVILET--LSFRNADLYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 8e-73
Identities = 96/239 (40%), Positives = 144/239 (60%), Gaps = 45/239 (18%)
Query: 846 PLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMD 905
+T++F++L V + +LL +V+G +PG LTA+MG SGAGK+TL++
Sbjct: 1 GVTLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLN 53
Query: 906 VLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAP 965
LAGR+T V GE+ I+G P + +F ++ GY Q DI P +TV E+++F+A LR
Sbjct: 54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110
Query: 966 EINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1025
GLS +RKR++IA+ELV+NPS++F+D
Sbjct: 111 ----------------------------------GLSGGERKRVSIALELVSNPSLLFLD 136
Query: 1026 EPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
EPT+GLD+ +A VM ++ + +TGRTI+C+IHQPS +IFE FD+L+LL + GR+IY G
Sbjct: 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLL-SQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 2e-60
Identities = 76/246 (30%), Positives = 118/246 (47%), Gaps = 64/246 (26%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF- 241
KI IL SG++KPG M L+LG PG G ST LKAL+ + ++ V G++ YNG +EF
Sbjct: 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78
Query: 242 -VPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI 300
P Y+S+ D+H +TVRET+DF+ RC+G
Sbjct: 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG-------------------------- 112
Query: 301 DTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGP 360
+ +++ IS G ++ + A+ +V A
Sbjct: 113 NEFVRGISG-GERKRVSI------------AEALVSRA---------------------- 137
Query: 361 TKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420
L D T GLDSSTA +I+ CI+ + + +T +SL Q + E +DLFD ++++ EG
Sbjct: 138 -SVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEG 196
Query: 421 KIVYHG 426
+ +Y+G
Sbjct: 197 RQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 3e-52
Identities = 149/583 (25%), Positives = 270/583 (46%), Gaps = 59/583 (10%)
Query: 846 PLTVAFQDLKYYVDTPLEMRERGFADRKL-----------------RLLYDVTGSLRPGV 888
P+T+ F D+ Y V M+ +G +++ +L VTG PG
Sbjct: 37 PITLKFMDVCYRVKFE-NMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 889 LTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPN 948
+ A++G SG+GK+TL++ LAGR G I + ++ R +G+ Q DI P+
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKR-TGFVTQDDILYPH 154
Query: 949 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKR 1008
+TV E+++F + LRL + + K V+ + L +++++G + G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 1009 LTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAF 1068
++IA E++ NPS++ +DEPT+GLDA AA ++ + ++ G+TIV ++HQPS +++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 1069 DELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTS------- 1121
D +++L + GR ++ G S + YFE + P NPA +++++ +
Sbjct: 275 DSVLVL-SEGRCLFFGKG----SDAMAYFESVGFSPSF--PMNPADFLLDLANGVCQTDG 327
Query: 1122 --------------TSAEAELCVDFAQIFRESVLYENNRELVKQLNTPPPGSKDLHFPTR 1167
S L S + N V +T S D R
Sbjct: 328 VSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSD-----R 382
Query: 1168 FSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFN 1227
S + W S L + L + S+N +R+ A+LL G+++W H D Q L
Sbjct: 383 ISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWW-HSDFRDVQDRL-- 439
Query: 1228 IVGSSYLAVVFLGINNCSSVIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQ 1287
G + +F G+ + + +ER + +E +GMY+ +Y +A++ ++P LI
Sbjct: 440 --GLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELIL 497
Query: 1288 ALSYVIIGYPMIGYYWSAYKLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILSSVCY 1347
++ + Y M G + ++ LG+ L + ++ AS + +V
Sbjct: 498 PTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTM 557
Query: 1348 TLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWALNAMVTSQYGD 1390
F L GF + K+P W+ Y+ T ++ ++ QYG+
Sbjct: 558 LAFVLTGGFYV--HKLPSCMAWIKYISTTFYSYRLLINVQYGE 598
|
Length = 659 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 179 bits (455), Expect = 8e-51
Identities = 74/216 (34%), Positives = 126/216 (58%), Gaps = 6/216 (2%)
Query: 870 ADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY-VEGEIKISGYPKV 928
++ R+L DV+ + G + A++G SG+GKTTL+D ++GR G G+I +G P+
Sbjct: 16 WNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK 75
Query: 929 QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI 988
+ F + Y Q DI P +TV E++ ++A LRL P +S + E + L +
Sbjct: 76 PDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRL-PRKSSDAIRKKRVEDVL---LRDL 131
Query: 989 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN 1048
+ +G V G+S +R+R++IAV+L+ +P ++ +DEPT+GLD+ A ++ + +
Sbjct: 132 ALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR 191
Query: 1049 TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
R ++ TIHQP D+F FD ++LL + G I+Y G
Sbjct: 192 RNRIVILTIHQPRSDLFRLFDRILLL-SSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 3e-48
Identities = 65/215 (30%), Positives = 113/215 (52%), Gaps = 7/215 (3%)
Query: 1175 QFKSCLWKLHLSYWRSPSYN-LMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSY 1233
Q K+ L + L WR PS L R++ +L+FG +F LD N G +
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFG----NLDTSLGGLNRPGLLF 57
Query: 1234 LAVVFLGINNCSSVIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVI 1293
+++F ++ + + P RER V+ RE + +YSP AY LA++ VE+P L+QA+ +++
Sbjct: 58 FSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLL 117
Query: 1294 IGYPMIGYYWSAYKLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLF 1353
I Y M+G S + F + T + + LG+ + +L P+ AS + + L
Sbjct: 118 IVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLL 175
Query: 1354 AGFLIPGPKIPKWWIWMYYMMPTSWALNAMVTSQY 1388
+GF IP +P W W+YY+ P ++A+ A+ +++
Sbjct: 176 SGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 8e-45
Identities = 72/273 (26%), Positives = 121/273 (44%), Gaps = 22/273 (8%)
Query: 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKV 928
L V+ + PG + L+G +GAGKTTL+ +LAG + TSG EI + GY V
Sbjct: 15 GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG----EILVLGYDVV 70
Query: 929 QET--FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD 986
+E R GY Q P +TV E++ F A L + ++ + E E+LE L+
Sbjct: 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIE---ELLELFGLE 127
Query: 987 AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046
+ V LS ++RL+IA+ L+ +P ++ +DEPT+GLD + + ++ +
Sbjct: 128 DKANKKVR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLREL 182
Query: 1047 VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKI 1106
G + + E D +I+L G+II G ++ E F G + ++
Sbjct: 183 AKEGGVTILLSTHILEEAEELCDRVIILN-DGKIIAEGTP----EELKEKFGGKGVI-EL 236
Query: 1107 RNNYNPATWVIEVTSTSAEAELCVDFAQIFRES 1139
++E E + + E
Sbjct: 237 EPERLELAELLEGLKLVKGEEELAEILEALLEE 269
|
Length = 293 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 6e-41
Identities = 71/242 (29%), Positives = 122/242 (50%), Gaps = 38/242 (15%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
ILN VS ++ G++ +LG G GK+T L A+SG ++ +G++ +NG + K
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
AY+ Q+D+ + +TVRET+ ++A R + R+K V
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAIL-----RLPRKSSDAIRKKRVEDV---------- 126
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTG-EMIVGPTKAL 364
L A T +G + +GISGG+++R++ +++ P K L
Sbjct: 127 --------------------LLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP-KVL 165
Query: 365 FMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVY 424
+DE T+GLDS TA +++ + QL + ++++ QP + F LFD I+L++ G+IVY
Sbjct: 166 ILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224
Query: 425 HG 426
G
Sbjct: 225 SG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 4e-40
Identities = 80/305 (26%), Positives = 137/305 (44%), Gaps = 51/305 (16%)
Query: 167 MISVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLK 226
MI V+ + K L+ VS ++PG + LLGP G GK+T LK L+G L P+
Sbjct: 1 MIEVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT-- 58
Query: 227 VTGEVSYNGYKLEEFVP--PKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMME 284
+GE+ GY + + + Y+ Q E+TVRE ++F AR G+ E
Sbjct: 59 -SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEE----- 112
Query: 285 VSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGIS 344
E+ + +L++ GL+ A+ V R +S
Sbjct: 113 ---AEERI--------------------------EELLELFGLEDKANKKV-----RTLS 138
Query: 345 GGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALIS--LLQ 402
GG K+RL+ ++ + L +DE T+GLD + +I +++L T L+S +L+
Sbjct: 139 GGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE 198
Query: 403 PAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRC--PERKGVSDFLQEVLSRKD 460
E +L D +I++ +GKI+ G + + F G PER +++ L+ + K
Sbjct: 199 ---EAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKG 255
Query: 461 QAQFW 465
+ +
Sbjct: 256 EEELA 260
|
Length = 293 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 154 bits (390), Expect = 2e-38
Identities = 144/576 (25%), Positives = 260/576 (45%), Gaps = 82/576 (14%)
Query: 165 KGMISVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS 224
K ++ PK+S + ILN V+G+ PG + +LGP G GKST L AL+G + +
Sbjct: 62 KRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN 121
Query: 225 LKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMME 284
TG + N K + + +T +++Q+D+ +TVRET+ F + + S
Sbjct: 122 -NFTGTILANNRKPTKQILKRT-GFVTQDDILYPHLTVRETLVFCSLLRLPKS------- 172
Query: 285 VSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGIS 344
++++EK L + ++ LGL C +T++GN+ RGIS
Sbjct: 173 LTKQEK------------------------ILVAESVISELGLTKCENTIIGNSFIRGIS 208
Query: 345 GGQKKRLTTG-EMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQP 403
GG++KR++ EM++ P+ L +DE T+GLD++ AY+++ + L T + S+ QP
Sbjct: 209 GGERKRVSIAHEMLINPS-LLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQP 266
Query: 404 APETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEV-------- 455
+ + +FD +++++EG+ ++ G +A+FE GF +DFL ++
Sbjct: 267 SSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTD 326
Query: 456 -LSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLVPYDK-----SKSPKN 509
+S +++ + L SY ++ +P VK E P S S K
Sbjct: 327 GVSEREKPN--VKQSLVASYNTL--------LAPKVKAAIEMSHFPQANARFVGSASTKE 376
Query: 510 AISFSVYSLSRW-ELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEID 568
S S+S W F + R L + SF + Q+I A +A ++
Sbjct: 377 HRSSDRISISTWFNQFSILLQRSLKERKHESF-NTLRVFQVIAAALLAGLMW-------- 427
Query: 569 VFHGNYY-----MGSLYFSLVVLLVDGMPELSMTI---QRLEVFYKQQELCFYPAWAYAI 620
+H ++ +G L+F + V P + Q +F K++ Y +Y +
Sbjct: 428 -WHSDFRDVQDRLGLLFFISIFWGV--FPSFNSVFVFPQERAIFVKERASGMYTLSSYFM 484
Query: 621 PATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQ 680
+ +P+ L+ + +TY++ G PE+ F ++L S + + +
Sbjct: 485 ARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIM 544
Query: 681 TEFAAMTAGSVVILFVFLFGGFVISR-PSMPAWLKW 715
A T +V +L L GGF + + PS AW+K+
Sbjct: 545 DAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKY 580
|
Length = 659 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 7e-38
Identities = 53/215 (24%), Positives = 105/215 (48%), Gaps = 7/215 (3%)
Query: 522 ELFKACMSRELLLMRRNSFV-YVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLY 580
KA + RE L R+ + +++ Q +++A + TVF + G L+
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGL---NRPGLLF 57
Query: 581 FSLVVLLVDGMPELSMT-IQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTC 639
FS++ + +S I+ V ++ Y AY + ++++P+SL+ ++ +
Sbjct: 58 FSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLL 117
Query: 640 LTYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLF 699
+ Y+++G V RFF ++L + + + F+A++ + A G +++L + L
Sbjct: 118 IVYFMVGL--PVSRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLL 175
Query: 700 GGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEF 734
GF I SMP WL+W ++++P+TY L NEF
Sbjct: 176 SGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 5e-35
Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 38/226 (16%)
Query: 864 MRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY--VEGEIK 921
G K+ +L D +G ++PG + ++G G+G +TL+ LA R T G VEG+I
Sbjct: 10 SFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIH 68
Query: 922 ISGYP--KVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEV 979
+G P + E + Y + D+H P +TV E++ F+ + NE
Sbjct: 69 YNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------GNEF 115
Query: 980 LETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1039
V G+S +RKR++IA LV+ S++ D T GLD+ A +
Sbjct: 116 ------------------VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEI 157
Query: 1040 MRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
++ ++ + + T +++Q S +I++ FD++++L GR IY G
Sbjct: 158 LKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLY-EGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 3e-30
Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 29/215 (13%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFA--R 934
D++ ++ G + L+G +GAGKTT + +L G R TSG I+GY + A +
Sbjct: 20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAARQ 75
Query: 935 VSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVG 994
GYC Q D +TV E + F A L+ + E V +L + L +
Sbjct: 76 SLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRAR 132
Query: 995 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIV 1054
LS +++L++A+ L+ PS++ +DEPT+GLD + + + + GR+I+
Sbjct: 133 -----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGRSII 186
Query: 1055 CTIHQPSIDIFEAFDEL-----ILLKTGGRIIYCG 1084
T H S+D EA + L I+ G++ G
Sbjct: 187 LTTH--SMD--EA-EALCDRIAIMSD--GKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-29
Identities = 72/215 (33%), Positives = 106/215 (49%), Gaps = 16/215 (7%)
Query: 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP--KVQ 929
K R L V+ +L PG+ L+G +GAGKTTLM +LA G I+I G K
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLKQP 67
Query: 930 ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK 989
+ R GY Q PN TV E + + AWL+ I SK V+EVLE + L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT 1049
+G LS R+R+ IA LV +PSI+ +DEPT GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 1050 GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
R ++ + H D+ +++ +L G++++ G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-28
Identities = 59/213 (27%), Positives = 105/213 (49%), Gaps = 19/213 (8%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFAR 934
L DV+ ++PG A++G +GAGK+TL+ + G + TSG I++ G P +++ R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSG----SIRVFGKP-LEKERKR 69
Query: 935 VSGYCEQTDIHSPN--ITVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDAIKDS 991
+ GY Q + I+V + V+ + SK V+E LE + L + D
Sbjct: 70 I-GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR 128
Query: 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGR 1051
+G LS Q++R+ +A LV +P ++ +DEP G+D + + ++ + G
Sbjct: 129 QIG-----ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGM 183
Query: 1052 TIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
TI+ H + + E FD ++LL ++ G
Sbjct: 184 TILVVTHDLGL-VLEYFDRVLLLN--RTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-28
Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 17/229 (7%)
Query: 862 LEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG-RKTSGYVEGEI 920
+E+ + +L D++ S+ G +TAL+G +GAGK+TL+ + G K S GEI
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEI 61
Query: 921 KISGYPKVQETFARVSGYCEQTDIHSPN--ITVEESVIFSAWLR--LAPEINSKTKAEFV 976
KI G P + GY Q + ITV++ V+ + + +N K K + V
Sbjct: 62 KIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK-V 120
Query: 977 NEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036
+E LE + ++ ++D +G LS Q++R+ +A L NP ++ +DEP TG+D
Sbjct: 121 DEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQ 175
Query: 1037 AIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
+ +K + G+T++ H + + FD +I L +I GP
Sbjct: 176 KEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICLN--RHLIASGP 221
|
Length = 254 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 3e-27
Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 23/217 (10%)
Query: 869 FADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928
+ D L D++ +++ G ++G +G+GK+TL+ +L G G GE+ + G
Sbjct: 9 YPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLT 66
Query: 929 QET---FARVSGYCEQTDIHSP-----NITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 980
+ + R G Q +P TVEE V F PE + + V E L
Sbjct: 67 KLSLKELRRKVGLVFQ----NPDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEAL 119
Query: 981 ETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM 1040
E + L+ ++D LS Q++R+ IA L +P I+ +DEPT GLD ++
Sbjct: 120 ELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELL 174
Query: 1041 RAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
+K + G+TI+ H + E D +I+L+ G
Sbjct: 175 ELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 8e-27
Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L +VSG KPG +T ++GP G GKST L AL+G L V+GEV NG L++ K
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG-LGVSGEVLINGRPLDKRSFRK 82
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGV 275
Y+ Q+D+ +TVRET+ F+A+ +G+
Sbjct: 83 IIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 16/207 (7%)
Query: 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQET 931
+ +L D++ L G + AL G +GAGKTTL +LAG G I ++G P +
Sbjct: 11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKE 68
Query: 932 FARVSGYCEQT-DIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKD 990
+ GY Q D +V E ++ L+ E VL+ ++L A+K+
Sbjct: 69 RRKSIGYVMQDVDYQLFTDSVREELLLG--LKELDA-----GNEQAETVLKDLDLYALKE 121
Query: 991 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTG 1050
P LS Q++RL IA L++ ++ DEPT+GLD + V ++ + G
Sbjct: 122 RH---P--LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQG 176
Query: 1051 RTIVCTIHQPSIDIFEAFDELILLKTG 1077
+ ++ H + + D ++LL G
Sbjct: 177 KAVIVITHDYEF-LAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 6e-23
Identities = 67/220 (30%), Positives = 105/220 (47%), Gaps = 24/220 (10%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG-RKTSGYVEGEIKISG---YPKVQET 931
+L D++ S+ G +T ++G +G+GK+TL+ LAG K GE+ + G +
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKE 73
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFS--AWLRLAPEINSKTKAEFVNEVLETIELDAIK 989
A+ Y Q+ +TV E V+ L L SK E V E LE + L+ +
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGR-PSKEDEEIVEEALELLGLEHLA 132
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV-N 1048
D V+ LS +R+R+ IA L I+ +DEPT+ LD V+ ++++
Sbjct: 133 DR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187
Query: 1049 TGRTIVCTIHQPSIDIFEAF---DELILLKTGGRIIYCGP 1085
G T+V +H D+ A D LILLK G+I+ G
Sbjct: 188 KGLTVVMVLH----DLNLAARYADHLILLK-DGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 2e-22
Identities = 36/87 (41%), Positives = 65/87 (74%), Gaps = 3/87 (3%)
Query: 341 RGISGGQKKRLTTG-EMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALIS 399
RG+SGG++KR++ E++ P+ LF+DE T+GLDSS+A Q+++ +++L T T + S
Sbjct: 110 RGLSGGERKRVSIALELVSNPS-LLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICS 167
Query: 400 LLQPAPETFDLFDDIILMAEGKIVYHG 426
+ QP+ E F+LFD ++L+++G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 2e-22
Identities = 67/218 (30%), Positives = 106/218 (48%), Gaps = 21/218 (9%)
Query: 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE-GEIKISGYPK 927
K++ L V+ S+ G A++G SG+GK+TL+++L G R TSG V IS +
Sbjct: 14 GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSE 73
Query: 928 VQETFARVS--GYCEQTDIHS--PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 983
+ R G+ Q+ + P++T E+V L P+ + +AE E+LE +
Sbjct: 74 KELAAFRRRHIGFVFQS--FNLLPDLTALENVELPLLLAGVPKKERRERAE---ELLERV 128
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
L + + LS Q++R+ IA L +P II DEPT LD+ VM +
Sbjct: 129 GLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL 183
Query: 1044 KNIV-NTGRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080
+ + G TIV H P ++ E D +I L+ G+I
Sbjct: 184 RELNKEAGTTIVVVTHDP--ELAEYADRIIELR-DGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 2e-21
Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 52/215 (24%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG-RKTSGYVEGEIKISGYPKVQETFA 933
+L D++ S+ G + ++G +GAGK+TL+ LAG K S GEI + G
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---GEILLDG--------- 60
Query: 934 RVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAE---FVNEVLETIELDAIKD 990
D+ S ++ K A +V + LE + L + D
Sbjct: 61 --------KDLAS--------------------LSPKELARKIAYVPQALELLGLAHLAD 92
Query: 991 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-T 1049
N LS +R+R+ +A L P I+ +DEPT+ LD ++ ++ +
Sbjct: 93 R-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARER 147
Query: 1050 GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
G+T+V +H ++ D +ILLK GRI+ G
Sbjct: 148 GKTVVMVLHDLNL-AARYADRVILLK-DGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 2e-21
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 739 WQKMLP-TNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSS 797
W K +N T+G+ +L+SRGL + + +WI +GAL G +L NI FTLALT+L G S
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 798 RVMIS 802
+ ++S
Sbjct: 61 QAIVS 65
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 91.7 bits (229), Expect = 4e-21
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 54/208 (25%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYP--KVQETF 932
L D++ ++ G + L+G +GAGKTTL+ ++ G + SG EIK+ G K E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 933 ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL 992
R GY + N+TV E++ S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLSG--------------------------------- 98
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRT 1052
G ++RL +A L+ +P ++ +DEPT+GLD + ++ + G+T
Sbjct: 99 -------G----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1053 IVCTIHQPSIDIFEAFDELILLKTGGRI 1080
I+ + H + D + +L GRI
Sbjct: 148 ILLSSHILE-EAERLCDRVAILN-NGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 8e-21
Identities = 61/247 (24%), Positives = 102/247 (41%), Gaps = 62/247 (25%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP- 244
L+ +S +K G L++GP G GKST L+ L+G L P+ +GEV +G L +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKE 72
Query: 245 --KTSAYISQN-DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDID 301
+ + QN D TV E V F G+ E E+ R +EA
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-PEE----EIEERVEEA--------- 118
Query: 302 TYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPT 361
L+++GL+ D +SGGQK+R+ ++
Sbjct: 119 --------------------LELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAMDP 153
Query: 362 KALFMDEITNGLDSSTAYQIIACIQQL-------VHITDSTALISLLQPAPETFDLFDDI 414
L +DE T GLD + +++ +++L + +T L+ +L D +
Sbjct: 154 DILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLL---------LELADRV 204
Query: 415 ILMAEGK 421
I++ +GK
Sbjct: 205 IVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 1e-20
Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 32/194 (16%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYV--EGEIKISGYPKVQ----- 929
DV+ S+RPG + L+G +GAGKTTL ++++G R TSG V +GE I+G P +
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE-DITGLPPHEIARLG 76
Query: 930 --ETFARVSGYCEQTDIHSPNITVEESVI-------FSAWLRLAPEINSKTKAEFVNEVL 980
TF + P +TV E+V+ S L + E E+L
Sbjct: 77 IGRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELL 128
Query: 981 ETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM 1040
E + L + D G LS Q++RL IA L +P ++ +DEP GL+ +
Sbjct: 129 ERVGLADLADRPAG-----ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA 183
Query: 1041 RAVKNIVNTGRTIV 1054
++ + G T++
Sbjct: 184 ELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 2e-20
Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 55/209 (26%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPKVQETF 932
L DV+ ++ G + AL+G SG+GK+TL+ +AG SG ++GE ++
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGE-DLTDLEDELPPL 74
Query: 933 ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL 992
R G Q P++TV E++
Sbjct: 75 RRRIGMVFQDFALFPHLTVLENIAL----------------------------------- 99
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV-NTGR 1051
GLS Q++R+ +A L +P ++ +DEPT+ LD V +K++ G
Sbjct: 100 -------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGI 152
Query: 1052 TIVCTIHQPSIDIFEAF---DELILLKTG 1077
T+V H D+ EA D +++L+ G
Sbjct: 153 TVVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 3e-20
Identities = 67/223 (30%), Positives = 106/223 (47%), Gaps = 36/223 (16%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPKVQE 930
R L D++ ++ PG AL+G SG GKTTL+ ++AG R SG ++G ++G P +
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGR-DVTGVPPER- 71
Query: 931 TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKD 990
R G Q P++TV E++ F ++ KAE V E +E
Sbjct: 72 ---RNIGMVFQDYALFPHLTVAENIAF------GLKLRGVPKAEIRARVRELLE------ 116
Query: 991 SLVGIPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045
LVG+ G + LS Q++R+ +A L PS++ +DEP + LDA+ + +K
Sbjct: 117 -LVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKE 175
Query: 1046 I-VNTGRTIVCTIHQPSIDIFEAF---DELILLKTGGRIIYCG 1084
+ G T + H D EA D + ++ GRI+ G
Sbjct: 176 LQRELGITTIYVTH----DQEEALALADRIAVMN-EGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 9e-20
Identities = 66/254 (25%), Positives = 106/254 (41%), Gaps = 50/254 (19%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP- 244
IL+ +S + G +T +LGP G GKST LK L+G L P +GEV +G + P
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKE 73
Query: 245 --KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
K AY+ Q+ +TV E V G P
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELV------------------------LLGRYP------ 103
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK 362
++ + + L++LGL+ AD V +SGG+++R+ + T
Sbjct: 104 HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQETP 158
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLF----DDIILMA 418
L +DE T+ LD + +++ ++ L T ++ L +L D +IL+
Sbjct: 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-----NLAARYADHLILLK 213
Query: 419 EGKIVYHGPQDHVL 432
+GKIV G + VL
Sbjct: 214 DGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 1e-19
Identities = 67/230 (29%), Positives = 99/230 (43%), Gaps = 39/230 (16%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGY------PKVQE 930
L DV+ S+ PG AL+G SGAGK+TL+ L G G + I G K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINKLKGKALR 74
Query: 931 TFARVSGYCEQTDIHSPNITVEESV---------IFSAWLRLAPEINSKTKAEFVNEVLE 981
R G Q ++V E+V + + L P+ K +A LE
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE-KQRAL---AALE 130
Query: 982 TIELDAIKDSLVGIPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036
VG+ + LS Q++R+ IA L+ P +I DEP LD ++
Sbjct: 131 R----------VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASS 180
Query: 1037 AIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
VM +K I G T++ ++HQ + E D ++ LK GRI++ GP
Sbjct: 181 RQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 1e-19
Identities = 55/210 (26%), Positives = 100/210 (47%), Gaps = 19/210 (9%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETF 932
R+L D++ ++ G + +G +GAGKTT M ++ G + SG + Y K E
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEAL 71
Query: 933 ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL 992
R+ E + PN+T E++ A L + + ++EVL+ + L
Sbjct: 72 RRIGALIEAPGFY-PNLTARENLRLLARLLGIRK-------KRIDEVLDVVGLKDSAKKK 123
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRT 1052
V G S ++RL IA+ L+ NP ++ +DEPT GLD + + ++ + G T
Sbjct: 124 VK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 1053 IVCTIHQPSIDIFEAFDELILLKTGGRIIY 1082
++ + H S +I + D + ++ G++I
Sbjct: 179 VLISSHLLS-EIQKVADRIGIIN-KGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 21/221 (9%)
Query: 868 GFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE-GEIKISG 924
G K+ L DV + G A++G SG+GK+TL+++L G + TSG V ++
Sbjct: 12 GLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTK 71
Query: 925 YPKVQETFARVS--GYCEQTDIHS--PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 980
+ + R G+ Q + P++TV E+V + K AE E+L
Sbjct: 72 LSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAGKSAGRRKRAAE---ELL 126
Query: 981 ETIEL-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1039
E + L D + LS Q++R+ IA L+ NP II DEPT LD++ A V
Sbjct: 127 EVLGLEDRLLKKKPSE-----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEV 181
Query: 1040 MRAVKNIV-NTGRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079
+ ++ + G+TI+ H P ++ + D +I LK G
Sbjct: 182 LELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 2e-19
Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 30/221 (13%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQET--- 931
L DV+ + G L+G +G+GK+TL+ +L G + TSG E+ + G E
Sbjct: 20 LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG----EVLVDGLDTSSEKSLL 75
Query: 932 -FARVSGYCEQTDIHSP-----NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 985
+ G Q +P TVE+ V F P + E V E LE + L
Sbjct: 76 ELRQKVGLVFQ----NPDDQLFGPTVEDEVAFGLENLGLPR---EEIEERVAEALELVGL 128
Query: 986 DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045
+ + D LS Q++R+ IA L P I+ +DEPT GLD + ++ +K
Sbjct: 129 EELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKK 183
Query: 1046 IVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
+ G+TI+ H + E D +++L G+I+ G
Sbjct: 184 LKEEGGKTIIIVTHDLE-LVLEYADRVVVLD-DGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-19
Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+LN++SG +KPG +T L+G G GK+T L L+G + +TGE+ NG L++ +
Sbjct: 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV-ITGEILINGRPLDKNF-QR 79
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSRE 279
++ Y+ Q D+H +TVRE + FSA +G+ +
Sbjct: 80 STGYVEQQDVHSPNLTVREALRFSALLRGLSVEQ 113
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 3e-19
Identities = 58/210 (27%), Positives = 105/210 (50%), Gaps = 19/210 (9%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQE 930
K++ + DV+ G +T L+G +GAGKTTL+ ++A SG ++ I G V++
Sbjct: 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSG----KVTIDGVDTVRD 69
Query: 931 TFA---RVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA 987
++ + +++ +T E++ + A RL + KA + E+ + ++L
Sbjct: 70 PSFVRRKIGVLFGERGLYA-RLTARENLKYFA--RLNGLSRKEIKAR-IAELSKRLQLLE 125
Query: 988 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047
D VG ST ++++ IA LV +PSI+ +DEPT+GLD R +K +
Sbjct: 126 YLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK 180
Query: 1048 NTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
N GR ++ + H ++ D +I+L G
Sbjct: 181 NEGRAVIFSSHIMQ-EVEALCDRVIVLHKG 209
|
Length = 245 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 8e-19
Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 47/248 (18%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKL--EEFVP 243
++ +S + G + LLG G GK+T LK L+G L P+ +G NGY + +
Sbjct: 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAA 73
Query: 244 PKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTY 303
++ Y Q D E+TVRE + F AR +G+ + E EV
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGL-PKSEIKEEVEL---------------- 116
Query: 304 MKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKA 363
+L++LGL A+ +SGG K++L+ ++G
Sbjct: 117 -----------------LLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGGPSV 154
Query: 364 LFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423
L +DE T+GLD ++ I I ++ + +++ E L D I +M++GK+
Sbjct: 155 LLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGKLR 211
Query: 424 YHGPQDHV 431
G +
Sbjct: 212 CIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 2e-18
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 26/228 (11%)
Query: 868 GFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKIS 923
F R +L V +R G + A++G SG+GK+TL+ ++ G R SG ++GE
Sbjct: 9 SFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISG 66
Query: 924 GYPKVQETFARVSGYCEQ-----TDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNE 978
R G Q + TV E+V F LR ++ + E V E
Sbjct: 67 LSEAELYRLRRRMGMLFQSGALFDSL-----TVFENVAF--PLREHTRLSEEEIREIVLE 119
Query: 979 VLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 1038
LE + L +D P LS +KR+ +A L +P ++ DEPT GLD A+ +
Sbjct: 120 KLEAVGLRGAEDLY---PA--ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGV 174
Query: 1039 VMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
+ ++++ G T + H F D + +L G+I+ G
Sbjct: 175 IDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLY-DGKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 2e-18
Identities = 63/264 (23%), Positives = 123/264 (46%), Gaps = 41/264 (15%)
Query: 828 TPMTNKESYKGRMVLPFEPLTVAFQDLKY-YVDTPLEMRERGFADRKLRLLYDVTGSLRP 886
+P+ S + V P+ ++ ++L + Y D L D+ +++
Sbjct: 300 SPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK-------------PALSDLNLTIKA 346
Query: 887 GVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV---QETFARVSGYCEQTD 943
G LTAL+G SGAGK+TL+++L G +GEI+++G E + + + Q
Sbjct: 347 GQLTALVGASGAGKSTLLNLLLGFLAPT--QGEIRVNGIDLRDLSPEAWRKQISWVSQ-- 402
Query: 944 IHSPNITVEESVIFSAWLR-----LAPEINSKTKAEFVNEV--LETIELDAIKDSLVGIP 996
+F+ +R P+ + + +++ LE + D+++G
Sbjct: 403 ---------NPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEG 453
Query: 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCT 1056
G GLS Q +RL +A L++ S++ +DEPT LDA I+++A++ + +T++
Sbjct: 454 G-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL-AKQKTVLVI 511
Query: 1057 IHQPSIDIFEAFDELILLKTGGRI 1080
H+ D +A D +++L G +
Sbjct: 512 THRLE-DAADA-DRIVVLDNGRLV 533
|
Length = 559 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 3e-18
Identities = 68/256 (26%), Positives = 108/256 (42%), Gaps = 52/256 (20%)
Query: 179 SLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS---LKVTGEVSYNG 235
+ L VS ++ G LL+GP G GKST LK L+G L P+ + V G + +
Sbjct: 12 RYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSE 71
Query: 236 YKLEEFVPPKTSAYISQN-DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGI 294
L E + + QN D + TV + V F G+ REE + R EA
Sbjct: 72 KSLLELR--QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL-PREE----IEERVAEA-- 122
Query: 295 VPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLT-T 353
L+++GL+ D N +SGGQK+R+
Sbjct: 123 ---------------------------LELVGLEELLDRPPFN-----LSGGQKQRVAIA 150
Query: 354 GEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALIS--LLQPAPETFDLF 411
G + +GP + L +DE T GLD +++ +++L T +I L+ E
Sbjct: 151 GVLAMGP-EILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLE---YA 206
Query: 412 DDIILMAEGKIVYHGP 427
D ++++ +GKI+ G
Sbjct: 207 DRVVVLDDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 4e-18
Identities = 61/219 (27%), Positives = 106/219 (48%), Gaps = 23/219 (10%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE-GEIKISGYPKVQETF 932
++ V + PG LT L+G +G+GK+TL+ +LAG R +G V+ + + G +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR-- 73
Query: 933 ARVSGYCEQTDIHSPNITVEESVIF------SAWLRLAPEINSKTKAEFVNEVLETIELD 986
AR EQ + +TV + V S W +P A V+ L EL
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPH-----DAAVVDRALARTELS 128
Query: 987 AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046
+ D ++ LS +R+R+ +A L P ++ +DEPT LD RA + V+ +
Sbjct: 129 HLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183
Query: 1047 VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
TG T+V +H +++ ++ + +++ GGR++ GP
Sbjct: 184 AATGVTVVAALH--DLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 5e-18
Identities = 57/185 (30%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQET--FAR 934
V+ +R G + L+G +GAGKTT + +L + TSG ++G+ V+E R
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREVRR 73
Query: 935 VSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVG 994
G Q +T E++ A L P + E ++E+L+ + L D LV
Sbjct: 74 RIGIVFQDLSVDDELTGWENLYIHARLYGVP---GAERRERIDELLDFVGLLEAADRLVK 130
Query: 995 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTI 1053
S R+RL IA LV P ++F+DEPT GLD + A V ++ + G TI
Sbjct: 131 T-----YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTI 185
Query: 1054 VCTIH 1058
+ T H
Sbjct: 186 LLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 6e-18
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 972 KAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031
+ + + + L+ ++ + +P LS QR+R+ +A L+ NP ++ +DEPT+GL
Sbjct: 55 EILIDGKDIAKLPLEELRRRIGYVPQ---LSGGQRQRVALARALLLNPDLLLLDEPTSGL 111
Query: 1032 DARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
D + ++ ++ + GRT++ H P A D +I+LK G
Sbjct: 112 DPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 6e-18
Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 31/213 (14%)
Query: 862 LEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSG 914
+E+R+ L D++ + G +TAL+G SG GK+TL+ D++ G
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP--- 57
Query: 915 YVEGEIKISGYPKVQETFARVS-----GYCEQTDIHSPNI---TVEESVIFSAWLRLAPE 966
EGE+ + G + G Q PN ++ ++V + L
Sbjct: 58 -DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQ----KPNPFPGSIYDNVAYGLRLHG--I 110
Query: 967 INSKTKAEFVNEVLETIEL-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1025
+ E V E L L D +KD L GLS Q++RL +A L P ++ +D
Sbjct: 111 KLKEELDERVEEALRKAALWDEVKDRLHA----LGLSGGQQQRLCLARALANEPEVLLLD 166
Query: 1026 EPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIH 1058
EPT+ LD + A + + + TIV H
Sbjct: 167 EPTSALDPISTAKIEELIAEL-KKEYTIVIVTH 198
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 8e-18
Identities = 63/230 (27%), Positives = 110/230 (47%), Gaps = 18/230 (7%)
Query: 862 LEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIK 921
LE+ F R L DV+ ++RPG AL+G +GAGK+TL +L + EG+I
Sbjct: 2 LEVAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ--EGQIS 59
Query: 922 ISGYPKVQE---TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNE 978
++G+ + AR+ G Q +++V +++ + A L ++ + E
Sbjct: 60 VAGHDLRRAPRAALARL-GVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARARIAE 115
Query: 979 VLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 1038
+L + L D V L+ R+R+ IA L+ P+++ +DEPT GLD + A
Sbjct: 116 LLARLGLAERADDKVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAA 170
Query: 1039 VMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087
+ V+ + G +++ H +D EA D L++L GR++ G
Sbjct: 171 ITAHVRALARDQGLSVLWATHL--VDEIEADDRLVVLHR-GRVLADGAAA 217
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-17
Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 59/252 (23%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L +S ++ G +T L+GP G GKST LKA+ G L PS +GE+ G + +
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRL 75
Query: 246 TSAYISQNDLHIAE--MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTY 303
Y+ Q +TV++ V
Sbjct: 76 RIGYVPQKSSVDRSFPITVKDVV------------------------------------L 99
Query: 304 MKAISVKGVKRTLQT------DYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMI 357
+ KG R L D L+ +G++ D +G +SGGQK+R+ +
Sbjct: 100 LGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARAL 154
Query: 358 VGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISL--LQPAPETFDLFDDII 415
L +DE G+D + +I +++L T L+ L FD +I
Sbjct: 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-EGKTVLMVTHDLGLVM---AYFDRVI 210
Query: 416 LMAEGKIVYHGP 427
+ ++ GP
Sbjct: 211 CLN-RHLIASGP 221
|
Length = 254 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 1e-17
Identities = 60/204 (29%), Positives = 106/204 (51%), Gaps = 20/204 (9%)
Query: 861 PLEMR--ERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEG 918
P++ R E+ + D+ + + ++ ++ G L+G +GAGKTT + +L G G
Sbjct: 7 PIDFRNVEKRYGDKLV--VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AG 62
Query: 919 EIKISGYP---KVQETFARVSGYCEQTDIHSPNITVEESV-IFSAWLRLAPEINSKTKAE 974
I + G P + + RV G Q D P+ TV E++ +F + L+ +
Sbjct: 63 SISLCGEPVPSRARHARQRV-GVVPQFDNLDPDFTVRENLLVFGRYFGLS----AAAARA 117
Query: 975 FVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
V +LE +L+ D+ VG LS ++RLT+A LV +P ++ +DEPTTGLD +
Sbjct: 118 LVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ 172
Query: 1035 AAAIVMRAVKNIVNTGRTIVCTIH 1058
A ++ +++++ G+TI+ T H
Sbjct: 173 ARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 1e-17
Identities = 68/210 (32%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQE--TFAR 934
V +R G + +G +GAGKTT + +L R TSG +++GY V+E R
Sbjct: 11 GVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTA----RVAGYDVVREPRKVRR 66
Query: 935 VSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVG 994
G Q ++T E++ L P+ ++ +AE E+LE EL D VG
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAE---ELLELFELGEAADRPVG 123
Query: 995 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIV 1054
S R+RL IA L+ P ++F+DEPTTGLD R + ++ + G TI+
Sbjct: 124 -----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178
Query: 1055 CTIHQPSIDIFEAFDEL---ILLKTGGRII 1081
T H + EA D+L I + GRII
Sbjct: 179 LTTH----YMEEA-DKLCDRIAIIDHGRII 203
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 21/233 (9%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIK-ISGYPKVQET 931
+ L DV + G + A++G SGAGK+TL+ L G TSG + I+ +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77
Query: 932 FARVS-GYCEQTDIHSPNITVEESVIF------SAWLRLAPEINSKTKAEFVNEVLETIE 984
R G Q P ++V E+V+ S W L + + KA+ + + LE
Sbjct: 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQAL-DALE--R 134
Query: 985 LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
+ + + + LS Q++R+ IA LV P II DEP LD +A VM +K
Sbjct: 135 VGILDKAYQR---ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILK 191
Query: 1045 NI-VNTGRTIVCTIHQPSIDI-FEAFDELILLKTGGRIIYCGPLGKHSSQVIE 1095
+I G T++ +HQ +D+ + D +I LK GRI++ GP + + + ++
Sbjct: 192 DINQEDGITVIVNLHQ--VDLAKKYADRIIGLK-AGRIVFDGPASELTDEALD 241
|
Length = 258 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-17
Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 16/192 (8%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRK--TSGYVE-GEIKISGYPKVQETFA 933
L + S+ G L+G SGAGK+TL+ ++ + TSG + +S +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 934 RVS-GYCEQTDIHSPNITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDAIKD 990
R G Q P+ V E+V F+ + P EI + V LE + L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKR-----VPAALELVGLSHKHR 131
Query: 991 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTG 1050
+L LS +++R+ IA +V +P+I+ DEPT LD +M +K I G
Sbjct: 132 ALP-----AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 1051 RTIVCTIHQPSI 1062
T+V H +
Sbjct: 187 TTVVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 3e-17
Identities = 56/220 (25%), Positives = 96/220 (43%), Gaps = 19/220 (8%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGR--KTSG--YVEGEI--KISGYPKV 928
++L D++ + PG A++G +GAGKTTL+ +L G +SG + G K ++
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104
Query: 929 QETFARVSGYCEQTDIHSPNITVEESVI--FSAWLRLAPEINSKTKAEFVNEVLETIELD 986
++ VS E + TV + V+ F A + + E + +LE +
Sbjct: 105 RKRIGLVSS--ELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK 162
Query: 987 AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD--ARAAAIVMRAVK 1044
+ D G LS +++R+ IA LV +P ++ +DEP GLD AR +
Sbjct: 163 HLADRPFGS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEEL 217
Query: 1045 NIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
++ H +I F +LLK G ++ G
Sbjct: 218 AASPGAPALLFVTHHAE-EIPPCFTHRLLLK-EGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 4e-17
Identities = 58/212 (27%), Positives = 109/212 (51%), Gaps = 22/212 (10%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFA--R 934
V+ +++PG +T L+G +GAGKTT + +LAG +G+ + G+ V+E R
Sbjct: 23 GVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----VDGFDVVKEPAEARR 78
Query: 935 VSGYCEQTDIHSPNITVEESVIFSAWLR-LAP-EINSKTKAEFVNEVLETIELDAIKDSL 992
G+ + +T E++ + A L L E+ ++ + E+ + + ++ + D
Sbjct: 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR-----LEELADRLGMEELLDRR 133
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRT 1052
VG G ST R+++ IA LV +P ++ +DEPTTGLD A + ++ + G+
Sbjct: 134 VG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC 188
Query: 1053 IVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
I+ + H ++ D +++L GR++Y G
Sbjct: 189 ILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 4e-17
Identities = 70/259 (27%), Positives = 114/259 (44%), Gaps = 45/259 (17%)
Query: 868 GFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGY 925
F DR + L V + G + A++G SG+GK+TL+ ++ G R G EI I G
Sbjct: 17 SFGDRVI--LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKG----EILIDGE 70
Query: 926 PKVQ-------ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEIN-SKTKAEFVN 977
Q E R+ G Q ++TV E+V F P +K +
Sbjct: 71 DIPQLSEEELYEIRKRM-GVLFQQGALFSSLTVFENVAF-------PLREHTKLPESLIR 122
Query: 978 E-VLETIELDAIKDSLVGIPGVNG------LSTEQRKRLTIAVELVANPSIIFMDEPTTG 1030
E VL +EL VG+ G LS RKR+ +A + +P ++F+DEPT+G
Sbjct: 123 ELVLMKLEL-------VGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSG 175
Query: 1031 LDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKH 1089
LD +A ++ ++ + + G T++ H + D + +L G++I G +
Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLA-DGKVIAEGTPEEL 233
Query: 1090 SSQ----VIEYFEGISGVP 1104
+ V ++F GI P
Sbjct: 234 LASDDPWVRQFFNGIRDGP 252
|
Length = 263 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 59/239 (24%), Positives = 99/239 (41%), Gaps = 37/239 (15%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQE------ 930
L ++ ++ PG A++G SGAGK+TL+ + G I + G +
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDITKLRGKKLR 75
Query: 931 TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET-------I 983
R G Q +TV E+V L + K +L
Sbjct: 76 KLRRRIGMIFQHYNLIERLTVLENV-------LHGRLGYKP---TWRSLLGRFSEEDKER 125
Query: 984 ELDAIKDSLVGIPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 1038
L A++ VG+ + LS Q++R+ IA L P +I DEP LD + +
Sbjct: 126 ALSALE--RVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183
Query: 1039 VMRAVKNI-VNTGRTIVCTIHQPSIDIFEAF-DELILLKTGGRIIYCGPLGKHSSQVIE 1095
VM +K I G T++ +HQ +D+ + + D ++ LK G I++ G + +V+
Sbjct: 184 VMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKA-GEIVFDGAPSELDDEVLR 239
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 4e-17
Identities = 72/275 (26%), Positives = 109/275 (39%), Gaps = 49/275 (17%)
Query: 168 ISVLPKLSGYKSLEA--------KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSG 219
+ LPKL G E +L +S + PG ++G G GKST LK L G
Sbjct: 462 LIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLG 521
Query: 220 NLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSRE 279
P G + +G L I L R V G ++
Sbjct: 522 LYKPQ---QGRILLDGVDL---------NDIDLASL-------RRQV-------GYVLQD 555
Query: 280 ETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKI-LGLDVCADTMVGNA 338
+ S RE A P+ + ++A + G ++I + +G D T VG
Sbjct: 556 PFLFSGSIRENIALGNPEATDEEIIEAAQLAGA-----HEFIENLPMGYD----TPVGE- 605
Query: 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI 398
+SGGQ++RL ++ K L +DE T+ LD T I +Q L+ I +I
Sbjct: 606 GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAII---LQNLLQILQGRTVI 662
Query: 399 SLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLA 433
++ T D II++ +GKIV G + +LA
Sbjct: 663 -IIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 4e-17
Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 21/195 (10%)
Query: 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYV--EGEIKISGYPKVQ 929
L + DV+ +RPG + L+G +GAGKTTL +++ G + +SG V G I+G P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGR-DITGLP-PH 74
Query: 930 ETFARVSGYCEQTDIHSPNITVEESVI--------FSAWLRLAPEINSKTKA-EFVNEVL 980
Q P +TV E+V S L + +A E E+L
Sbjct: 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELL 134
Query: 981 ETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM 1040
E + L + D G LS Q++RL IA L P ++ +DEP GL+ +
Sbjct: 135 EFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA 189
Query: 1041 RAVKNI-VNTGRTIV 1054
++ + G TI+
Sbjct: 190 ELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 8e-17
Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 53/257 (20%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-- 243
+L+ VS L+PG + +LGP G GKST LKALSG L P +GEV+ NG L + P
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEE 72
Query: 244 -PKTSAYISQNDLHIA-EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDID 301
+ A + QN +A TV+E V G E ++ +
Sbjct: 73 LARHRAVLPQNS-SLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ------------- 118
Query: 302 TYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKR------LTTGE 355
+ A + G+ DY R +SGG+++R L
Sbjct: 119 -ALAATDLSGLA---GRDY--------------------RTLSGGEQQRVQLARVLAQLW 154
Query: 356 MIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415
V + LF+DE T+ LD + + + +QL + A++++L D I+
Sbjct: 155 PPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIV 212
Query: 416 LMAEGKIVYHGPQDHVL 432
L+ +G+++ G VL
Sbjct: 213 LLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 79.3 bits (197), Expect = 8e-17
Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 56/221 (25%)
Query: 862 LEMRERGFA--DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGE 919
+E + F+ R +L DV+ +++PG A++G SG+GK+TL+ +L GE
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGE 58
Query: 920 IKISGYPK---VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFV 976
I I G E+ + Y Q + +FS
Sbjct: 59 ILIDGVDLRDLDLESLRKNIAYVPQ-----------DPFLFS------------------ 89
Query: 977 NEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036
I++ N LS QR+R+ IA L+ +P I+ +DE T+ LD
Sbjct: 90 ---------GTIRE--------NILSGGQRQRIAIARALLRDPPILILDEATSALDPETE 132
Query: 1037 AIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
A+++ A++ + G+T++ H+ S D +I+L G
Sbjct: 133 ALILEALRALAK-GKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 19/187 (10%)
Query: 883 SLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFARVSGYCE 940
+L G L G +G+GKTTL+ ++AG +G ++ + P V E Y
Sbjct: 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAE----ACHYLG 79
Query: 941 QTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNG 1000
+ P +TV E++ F W + + LE + L + +P
Sbjct: 80 HRNAMKPALTVAENLEF--WAAFL-----GGEELDIAAALEAVGLAPLAH----LPF-GY 127
Query: 1001 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQP 1060
LS Q++R+ +A LV+N I +DEPT LDA A A+ ++ + G ++ H P
Sbjct: 128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP 187
Query: 1061 SIDIFEA 1067
+ + A
Sbjct: 188 -LGLPGA 193
|
Length = 207 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 69/226 (30%), Positives = 104/226 (46%), Gaps = 35/226 (15%)
Query: 868 GFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGY 925
G + L D++ S+ G AL+G SG GK+TL+ ++AG R TS GE+ + G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS----GEVLVDGE 66
Query: 926 PKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 985
P R GY Q D P +TV ++V E+ KAE E +E
Sbjct: 67 PVTGPGPDR--GYVFQQDALLPWLTVLDNVAL------GLELQGVPKAEARERAEELLE- 117
Query: 986 DAIKDSLVGIPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM 1040
LVG+ G LS R+R+ +A L +P ++ +DEP + LDA +
Sbjct: 118 ------LVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQ 171
Query: 1041 RAVKNIVN-TGRTIVCTIHQPSIDIFEAF---DELILL-KTGGRII 1081
+ +I TG+T++ H DI EA D +++L GRI+
Sbjct: 172 EELLDIWRETGKTVLLVTH----DIDEAVFLADRVVVLSARPGRIV 213
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 5e-16
Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 33/224 (14%)
Query: 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVE---GEIKISGYPK 927
D K +L D+ S++PG A++G +GAGKTTL+++L + + G+I I G
Sbjct: 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLL-----MRFYDPQKGQILIDGIDI 67
Query: 928 VQETFARVS---GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 984
+ + G Q D + T+ E++ E V E +
Sbjct: 68 RDISRKSLRSMIGVVLQ-DTFLFSGTIMENIRLG---------RPNATDEEVIEAAKEAG 117
Query: 985 LDAIKDSL-------VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 1037
L +G LS +R+ L IA ++ +P I+ +DE T+ +D
Sbjct: 118 AHDFIMKLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK 176
Query: 1038 IVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081
++ A++ ++ GRT + H+ S I A D++++L G+II
Sbjct: 177 LIQEALEKLMK-GRTSIIIAHRLST-IKNA-DKILVLD-DGKII 216
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 61/248 (24%), Positives = 98/248 (39%), Gaps = 53/248 (21%)
Query: 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP 244
+L VS +KPG ++GP G GKST LKA+ G L P+ +G + G LE+
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKE--R 67
Query: 245 KTSAYISQNDLHIAE----MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI 300
K Y+ Q + ++VR+ V G+ + +S+ +K
Sbjct: 68 KRIGYVPQR--RSIDRDFPISVRDVV-----LMGLYGHKGLFRRLSKADKAKV------- 113
Query: 301 DTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGP 360
D L+ +GL AD +G SGGQ++R+ +V
Sbjct: 114 ------------------DEALERVGLSELADRQIGEL-----SGGQQQRVLLARALVQD 150
Query: 361 TKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISL--LQPAPETFDLFDDIILMA 418
L +DE G+D T I +++L T L+ L + FD ++L+
Sbjct: 151 PDLLLLDEPFAGVDPKTQEDIYELLREL-RREGMTILVVTHDLGLVL---EYFDRVLLLN 206
Query: 419 EGKIVYHG 426
+V G
Sbjct: 207 -RTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 8e-16
Identities = 64/232 (27%), Positives = 102/232 (43%), Gaps = 30/232 (12%)
Query: 859 DTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEG 918
LE+ + + +L D+ S+ G A++G SG GK+TL+ ++AG + G
Sbjct: 1 MALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSG 58
Query: 919 EIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNE 978
E+ + G P V + GY Q D P +TV ++V L E+ K+KAE
Sbjct: 59 EVLLDGRP-VTGPGPDI-GYVFQEDALLPWLTVLDNV------ALGLELRGKSKAEARER 110
Query: 979 VLETIELDAIKDSLVGIPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 1033
E +E LVG+ G LS R+R+ IA L P ++ +DEP LDA
Sbjct: 111 AKELLE-------LVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDA 163
Query: 1034 RAAAIVMRAVKNIV-NTGRTIVCTIHQPSIDIFEAF---DELILLKTGGRII 1081
+ + + T +T++ H D+ EA D +++L I
Sbjct: 164 LTREELQDELLRLWEETRKTVLLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 1e-15
Identities = 65/221 (29%), Positives = 102/221 (46%), Gaps = 37/221 (16%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETF 932
+L D++ + PG A++G SG+GK+TL+ +L G +G I + G +
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRILLDGVDLNDIDLASL 545
Query: 933 ARVSGYCEQTD------------IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 980
R GY Q + +P T EE I A +LA EF+
Sbjct: 546 RRQVGYVLQDPFLFSGSIRENIALGNPEATDEE--IIEA-AQLA-GA-----HEFIEN-- 594
Query: 981 ETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM 1040
L D+ VG G N LS QR+RL +A L++ P I+ +DE T+ LD AI++
Sbjct: 595 ----LPMGYDTPVGEGGAN-LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIIL 649
Query: 1041 RAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081
+ + I GRT++ H+ S + D +I+L G+I+
Sbjct: 650 QNLLQI-LQGRTVIIIAHRLS--TIRSADRIIVLD-QGKIV 686
|
Length = 709 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-15
Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 39/226 (17%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE-GEIKISGYPKVQETFARV 935
D++ ++ G L+G SG GKTTL+ ++AG + +SG + I+ P R
Sbjct: 23 DISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP----PEKRP 78
Query: 936 SGYCEQTDIHS----PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDS 991
G Q S P++TVEE+V F L++ ++ V E LE + L+ D
Sbjct: 79 IGMVFQ----SYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFADR 132
Query: 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI-VNTG 1050
+ LS Q++R+ +A LV P ++ +DEP + LDA+ + + +K + G
Sbjct: 133 KP-----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELG 187
Query: 1051 RTIVCTIHQPSIDIFEAF---DELILLKTGGRI--------IYCGP 1085
T V H D EA D + ++ GRI IY P
Sbjct: 188 ITFVYVTH----DQEEALAMSDRIAVMN-DGRIEQVGTPEEIYERP 228
|
Length = 352 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 1e-15
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 20/192 (10%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETF 932
+L + + G + AL+G +GAGK+TL+ L G R SG V + + Y +
Sbjct: 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLE 65
Query: 933 ARVS-GYCEQT---DIHSPNITVEESVIFSAW-LRLAP-EINSKTKAEFVNEVLETIELD 986
R G Q + + V++ V F L L+ E+ + V E L +
Sbjct: 66 RRQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEAEVERR-----VREALTAVGAS 118
Query: 987 AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046
+++ + LS ++KR+ IA + P ++ +DEPT GLD ++ ++ +
Sbjct: 119 GLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL 173
Query: 1047 VNTGRTIVCTIH 1058
G T+V + H
Sbjct: 174 RAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 52/203 (25%), Positives = 91/203 (44%), Gaps = 35/203 (17%)
Query: 887 GVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISG--YPKVQETFAR-----VSGYC 939
G + A++G SG+GK+TL++++ + G++ ++G P + A GY
Sbjct: 24 GKMYAIIGESGSGKSTLLNIIG--LLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYL 81
Query: 940 EQTDIHSPNITVEESVIFSAWLRLAPE---INSKTKAEFVNEVLETIELDAIKDSLVGIP 996
Q N TVEE+ L L + ++ K K E E LE VG+
Sbjct: 82 FQNFALIENETVEEN------LDLGLKYKKLSKKEKREKKKEALEK----------VGLN 125
Query: 997 G-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGR 1051
+ LS +++R+ +A ++ P +I DEPT LD + V+ + + + G+
Sbjct: 126 LKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGK 185
Query: 1052 TIVCTIHQPSIDIFEAFDELILL 1074
TI+ H P + + D +I L
Sbjct: 186 TIIIVTHDPE--VAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 16/202 (7%)
Query: 868 GFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKI----- 922
G + ++L+D+ + PG + L G SG+GKTTL+ ++ G ++ EG +K+
Sbjct: 12 GHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQEL 69
Query: 923 SGYPKVQETFARVS-GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLE 981
G + + R + GY Q +T ++V + L L P ++ + E +LE
Sbjct: 70 YGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLE 127
Query: 982 TIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMR 1041
+ L D L P + LS Q++R+ IA LV P ++ DEPT LD+++ V+
Sbjct: 128 AVGL---GDHLDYYP--HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE 182
Query: 1042 AVKNIV-NTGRTIVCTIHQPSI 1062
++ + G TI+ H I
Sbjct: 183 LMQKLAREQGCTILIVTHDNRI 204
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 3e-15
Identities = 56/243 (23%), Positives = 99/243 (40%), Gaps = 46/243 (18%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
L+ +S ++PG LLGP GCGK+T L+ ++G P +GE+ +G + P +
Sbjct: 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPER 71
Query: 246 TS-AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
+ + Q+ +TV E + F + +GV E R +E
Sbjct: 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIR-----ARVRE------------- 113
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGE-MIVGPTKA 363
+L+++GL+ + +SGGQ++R+ + P
Sbjct: 114 ----------------LLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREP-SL 151
Query: 364 LFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423
L +DE + LD+ ++ +++L T + E L D I +M EG+IV
Sbjct: 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIV 210
Query: 424 YHG 426
G
Sbjct: 211 QVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 4e-15
Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 56/209 (26%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFA 933
+L +V+ S+ PG A++G SG+GK+TL ++ G R TSG +++ G
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDG--------- 63
Query: 934 RVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL--DAIKDS 991
DI + + V + + EL +I +
Sbjct: 64 --------ADISQ--------------------WDPNELGDHVGYLPQDDELFSGSIAE- 94
Query: 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGR 1051
N LS QR+RL +A L NP I+ +DEP + LD + +A+ + G
Sbjct: 95 -------NILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGA 147
Query: 1052 TIVCTIHQPSIDIFEAFDELILLKTGGRI 1080
T + H+P + D +++L GR+
Sbjct: 148 TRIVIAHRPE--TLASADRILVL-EDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 5e-15
Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 338 AMRRGISGGQKKRLTTG-EMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTA 396
A+ RG+S Q+KRLT G E+ P+ LF+DE T+GLDS AY I+ +++L +
Sbjct: 104 ALLRGLSVEQRKRLTIGVELAAKPS-ILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAI 161
Query: 397 LISLLQPAPETFDLFDDIILMAE-GKIVYHG 426
L ++ QP+ F+ FD ++L+ GK VY G
Sbjct: 162 LCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 5e-15
Identities = 60/217 (27%), Positives = 108/217 (49%), Gaps = 20/217 (9%)
Query: 869 FADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928
F D+K + +++ + PG + L+G +GAGKTT ++ G EGEI +G P
Sbjct: 12 FGDKKA--VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILG--LLEPTEGEITWNGGPLS 67
Query: 929 QETFARVSGYC-EQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-- 985
QE R+ GY E+ ++ P +TVE+ + + A L+ P+ + K + E LE +
Sbjct: 68 QEIKNRI-GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKT 125
Query: 986 DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045
IK+ LS ++++ ++ P ++ +DEP +GLD ++ A+
Sbjct: 126 KKIKE----------LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFE 175
Query: 1046 IVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIY 1082
+ G TI+ + H+ + E D L++LK G ++Y
Sbjct: 176 LKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLY 211
|
Length = 300 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 75.6 bits (187), Expect = 6e-15
Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 16/222 (7%)
Query: 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYP 926
++ L DV+ S++ G L+G SG+GK+TL + G + TSG +G+ +
Sbjct: 15 GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSR 74
Query: 927 KVQETFARVSGYCEQTDIHS--PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 984
++++ + Q + S P +T+ E + + + + E V +L +
Sbjct: 75 RLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHG-KLSKKEARKEAVLLLLVGVG 133
Query: 985 LDA-IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
L + + P + LS QR+R+ IA L NP ++ DEPT+ LD A ++ +
Sbjct: 134 LPEEVLNRY---P--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLL 188
Query: 1044 KNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
K + G T++ H + A D + ++ G+I+ G
Sbjct: 189 KKLQEELGLTLLFITHDLGVVAKIA-DRVAVMY-AGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 7e-15
Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 51/253 (20%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
Y K+ L VS ++ G ++GP G GKST L L G P+ +GEV +G
Sbjct: 10 YGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGT 66
Query: 237 KLEEFVPPKTSA-------YISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRRE 289
+ + + +A ++ Q+ + ++T E V+ GV +E RRE
Sbjct: 67 DISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKE-------RRE 119
Query: 290 KEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKK 349
+ + +L+ +GL + +SGGQ++
Sbjct: 120 R---------------------------AEELLERVGLGDRLNHYPSE-----LSGGQQQ 147
Query: 350 RLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFD 409
R+ + K + DE T LDS T +++ +++L +T ++ PE +
Sbjct: 148 RVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD--PELAE 205
Query: 410 LFDDIILMAEGKI 422
D II + +GKI
Sbjct: 206 YADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 8e-15
Identities = 62/226 (27%), Positives = 101/226 (44%), Gaps = 29/226 (12%)
Query: 861 PLEMRERGFADRKLR-LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGE 919
LE A R L V+ ++ PG AL+G SGAGK+TL+++L G EG
Sbjct: 321 SLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGS 378
Query: 920 IKISGYPKVQETFA---RVSGYCEQTDIHSPNITVEESVIFSAWLRLA-PEINSKTKAEF 975
I ++G P + Q P + ++ + +RLA P+
Sbjct: 379 IAVNGVPLADADADSWRDQIAWVPQH----PFL-FAGTIAEN--IRLARPD----ASDAE 427
Query: 976 VNEVLETIELD-------AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028
+ E LE LD D+ +G G GLS Q +RL +A + + ++ +DEPT
Sbjct: 428 IREALERAGLDEFVAALPQGLDTPIG-EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPT 486
Query: 1029 TGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILL 1074
LDA A V+ A++ + GRT++ H+ + + D +++L
Sbjct: 487 AHLDAETEAEVLEALRALAQ-GRTVLLVTHRLA--LAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-14
Identities = 66/197 (33%), Positives = 95/197 (48%), Gaps = 26/197 (13%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG-RKTSGYVEGEIKISGYP---KVQE 930
+L V+ L PG A++G SG+GK+TL+ LAG GE+ + G P Q+
Sbjct: 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQ---GEVTLDGVPVSSLDQD 405
Query: 931 TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIEL---- 985
R C Q D H + TV E+ LRLA P+ T E + LE + L
Sbjct: 406 EVRRRVSVCAQ-DAHLFDTTVREN------LRLARPDA---TDEE-LWAALERVGLADWL 454
Query: 986 DAIKDSLVGIPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
A+ D L + G G LS +R+RL +A L+A+ I+ +DEPT LDA A ++ +
Sbjct: 455 RALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL 514
Query: 1044 KNIVNTGRTIVCTIHQP 1060
+GRT+V H
Sbjct: 515 -LAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-14
Identities = 62/232 (26%), Positives = 112/232 (48%), Gaps = 27/232 (11%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP-KVQETFARVS- 936
++ ++ G L+G +GAGK+T+ ++ G + G+I + G P + AR
Sbjct: 59 GLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARI 116
Query: 937 GYCEQTDIHSPNITVEES-VIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
G Q D TV E+ ++F + + +++ + +LE L++ D+ V
Sbjct: 117 GVVPQFDNLDLEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARLESKADARVS- 171
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVC 1055
LS ++RLT+A L+ +P ++ +DEPTTGLD A ++ +++++ G+TI+
Sbjct: 172 ----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILL 227
Query: 1056 TIHQPSIDIFEAF----DELILLKTGGRIIYCGP---LGKH-SSQVIEYFEG 1099
T H E D L +L+ G +I P + +H QVIE + G
Sbjct: 228 TTH-----FMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEIYGG 274
|
Length = 340 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 68/226 (30%), Positives = 100/226 (44%), Gaps = 21/226 (9%)
Query: 867 RGFADRKLRL---LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE--GE 919
+ RK R L ++ ++ G + +G +GAGKTT + +L+G + TSG V G
Sbjct: 24 KSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL 83
Query: 920 IKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEV 979
+ K V G Q ++ V +S L I A F +
Sbjct: 84 VPWKRRKKFLRRIGVVFGQKTQL---WWDLPVIDS------FYLLAAIYDLPPARFKKRL 134
Query: 980 LETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1039
E EL +++ L+ P V LS QR R IA L+ P I+F+DEPT GLD A +
Sbjct: 135 DELSELLDLEE-LLDTP-VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192
Query: 1040 MRAVKNIV-NTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
+K G T++ T H DI EA +L+ GR++Y G
Sbjct: 193 RNFLKEYNRERGTTVLLTSHYMK-DI-EALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 1e-14
Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 37/224 (16%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYV--EGEIKISGYPKV---QE 930
+L +++ ++PG + ++G SG+GK+TL ++ YV G + + G+
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLALADPA 72
Query: 931 TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL----D 986
R G Q E+V+F+ +R I + V+E +L D
Sbjct: 73 WLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLAGAHD 119
Query: 987 AIK------DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM 1040
I D++VG G GLS QR+R+ IA L+ NP I+ DE T+ LD + +M
Sbjct: 120 FISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1041 RAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
R + +I GRT++ H+ S + A D +I+++ GRI+ G
Sbjct: 179 RNMHDIC-AGRTVIIIAHRLST-VKNA-DRIIVME-KGRIVEQG 218
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 57/263 (21%), Positives = 108/263 (41%), Gaps = 59/263 (22%)
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE 240
+L +S + G L+GP G GKST + + D +G + +G+ + +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRD 68
Query: 241 FVPP---KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
+ + +SQ D+ + TV E + + G T EV + A
Sbjct: 69 YTLASLRRQIGLVSQ-DVFLFNDTVAENIAY-------GRPGATREEVEEAARAANA--- 117
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI--SGGQKKRLTTGE 355
++I++ L DT++G RG+ SGGQ++R+
Sbjct: 118 --------------------HEFIME---LPEGYDTVIGE---RGVKLSGGQRQRIAIAR 151
Query: 356 MIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPETFDL 410
++ L +DE T+ LD+ + + A +++L+ + T + S ++ A
Sbjct: 152 ALLKDPPILILDEATSALDTESERLVQAALERLM--KNRTTFVIAHRLSTIENA------ 203
Query: 411 FDDIILMAEGKIVYHGPQDHVLA 433
D I+++ +GKIV G + +LA
Sbjct: 204 -DRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 61/258 (23%), Positives = 103/258 (39%), Gaps = 60/258 (23%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
Y K+ L V+ ++ G ++GP G GKST L L G P+ +GEV NG
Sbjct: 11 YGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGK 67
Query: 237 KLEEFVPPKTSA-------YISQN-DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRR 288
L + + + ++ QN +L + ++TV E V+ G RR
Sbjct: 68 DLTKLSEKELAKLRRKKIGFVFQNFNL-LPDLTVLENVELPLLIAGK--------SAGRR 118
Query: 289 EKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGL-DVCADTMVGNAMRRGISGGQ 347
++ A + +L++LGL D +SGGQ
Sbjct: 119 KRAA--------------------------EELLEVLGLEDRLLKKKPSE-----LSGGQ 147
Query: 348 KKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPA--- 404
++R+ ++ K + DE T LDS TA +++ +++L T ++
Sbjct: 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIM-----VTHD 202
Query: 405 PETFDLFDDIILMAEGKI 422
PE D +I + +GKI
Sbjct: 203 PELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-14
Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 21/217 (9%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE--GE-IKISGYPKVQET 931
L D++ ++ G L AL+G SGAGK+TL+ ++AG +G + G + V++
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD- 76
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFSAWLRL--APEINSKTKAEFVNEVLETIELDAIK 989
+V G+ Q P++TV +++ F +R E + + E E+L ++L+ +
Sbjct: 77 -RKV-GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE---ELLRLVQLEGLA 131
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV-N 1048
D P LS QR+R+ +A L P ++ +DEP LDA+ + R ++ +
Sbjct: 132 DRY---P--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR 186
Query: 1049 TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
G T V H + E D +++L GRI GP
Sbjct: 187 LGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 43/223 (19%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPKVQETF 932
L +V+ ++R G A++G G+GK+TL+ +LAG + TSG ++G I
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDG-TDIRQLDPA--DL 76
Query: 933 ARVSGYCEQTDIHSPNITVEESVIFSAWLR-----LAPEINSKTKAEFVNEVLETIELDA 987
R GY Q + +F LR AP + +L EL
Sbjct: 77 RRNIGYVPQ-----------DVTLFYGTLRDNITLGAPLADD-------ERILRAAELAG 118
Query: 988 IKDSLVGIP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 1038
+ D + P GLS QR+ + +A L+ +P I+ +DEPT+ +D +
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 1039 VMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081
+ ++ ++ +T++ H+PS+ + D +I++ GRI+
Sbjct: 179 LKERLRQLL-GDKTLIIITHRPSLL--DLVDRIIVMD-SGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 78.9 bits (194), Expect = 2e-14
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 16/179 (8%)
Query: 884 LRPGVLTALMGVSGAGKTTLMDVLAGRK--TSG--YVEGEIKISGYPKVQETFARVSGYC 939
+RPG L+GV+GAGKTT +L G TSG V G+ ++ V + GYC
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM----GYC 2017
Query: 940 EQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVN 999
Q D +T E + A LR P ++ + N ++++ L D L G
Sbjct: 2018 PQFDAIDDLLTGREHLYLYARLRGVP---AEEIEKVANWSIQSLGLSLYADRLAGT---- 2070
Query: 1000 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIH 1058
S +++L+ A+ L+ P ++ +DEPTTG+D +A ++ + +I+ GR +V T H
Sbjct: 2071 -YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 15/188 (7%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETF 932
L D++ +L G + G +GAGKTTL+ +LAG R +G V + V+E++
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY--WQGEPIQNVRESY 73
Query: 933 ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL 992
+ Y +T E++ F W R + A + E L + L ++D
Sbjct: 74 HQALLYLGHQPGIKTELTALENLHF--WQR----FHGSGNAATIWEALAQVGLAGLEDLP 127
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRT 1052
VG LS Q++R+ +A ++ + +DEP T LD A++ + G
Sbjct: 128 VG-----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGI 182
Query: 1053 IVCTIHQP 1060
++ T HQP
Sbjct: 183 VLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 51/209 (24%)
Query: 840 MVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAG 899
++L + ++V+F GF + L D++ S+ PG L L+G +GAG
Sbjct: 4 IILYLDGVSVSFG---------------GF-----KALNDLSFSVDPGELRVLIGPNGAG 43
Query: 900 KTTLMDVLAG--RKTSG--YVEGEIKISGYPKVQETFARVSGYCE--QTDIHSPNITVEE 953
KTTLMDV+ G R G +G+ ++ P+ + AR G Q N+TV E
Sbjct: 44 KTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--IARA-GIGRKFQKPTVFENLTVRE 100
Query: 954 SVIFSAWLRLAPEIN-----------SKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLS 1002
+ L LA + + ++E+L TI L +D L + LS
Sbjct: 101 N------LELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAAL-----LS 149
Query: 1003 TEQRKRLTIAVELVANPSIIFMDEPTTGL 1031
Q++ L I + L +P ++ +DEP G+
Sbjct: 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 3e-14
Identities = 64/243 (26%), Positives = 104/243 (42%), Gaps = 46/243 (18%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP---KTSAYI 250
+K G++T L+G G GKST L L G L P+ GE+ NG L + P K +++
Sbjct: 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWV 400
Query: 251 SQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVK 310
SQN ++ T+RE + + + +E ++ + VP PD
Sbjct: 401 SQNP-YLFAGTIRENILLARP----DASDEEIIAALDQAGLLEFVPKPD----------- 444
Query: 311 GVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEIT 370
GL DT++G G+SGGQ +RL ++ P L +DE T
Sbjct: 445 ---------------GL----DTVIGEG-GAGLSGGQAQRLALARALLSPASLLLLDEPT 484
Query: 371 NGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDH 430
LD+ T I+ +Q+L T L+ + E D I+++ G++V G +
Sbjct: 485 AHLDAETEQIILQALQEL--AKQKTVLVITHR--LEDAADADRIVVLDNGRLVEQGTHEE 540
Query: 431 VLA 433
+
Sbjct: 541 LSE 543
|
Length = 559 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 62/257 (24%), Positives = 103/257 (40%), Gaps = 47/257 (18%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
+N VS ++PG + L+GP G GK+T ++G PS +G V + G + +PP
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRG-RDITGLPPHR 75
Query: 247 SAY--IS---QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDID 301
A I+ Q +TV E V A + S + E+EA
Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREA--------- 126
Query: 302 TYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPT 361
+R + +L+ +GL AD GN +S GQ++RL +
Sbjct: 127 ----------RERARE---LLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQP 168
Query: 362 KALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPETFDLFDDIIL 416
K L +DE GL+ ++ I++L T L+ L+ L D I++
Sbjct: 169 KLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV------MGLADRIVV 222
Query: 417 MAEGKIVYHGPQDHVLA 433
+ G+++ G + V
Sbjct: 223 LNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 3e-14
Identities = 53/183 (28%), Positives = 97/183 (53%), Gaps = 14/183 (7%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK-VQETFARVS- 936
D++ ++ G L+G +GAGK+T+ +L G + G+I + G P + ARV+
Sbjct: 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLARVAI 79
Query: 937 GYCEQTDIHSPNITVEESV-IFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
G Q D P TV E++ +F + + +++ + +LE L++ D V +
Sbjct: 80 GVVPQFDNLDPEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARLESKADVRVAL 135
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVC 1055
LS ++RLT+A L+ +P ++ +DEPTTGLD A ++ +++++ G+TI+
Sbjct: 136 -----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILL 190
Query: 1056 TIH 1058
T H
Sbjct: 191 TTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 3e-14
Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 25/191 (13%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPKV 928
K ++L+ V+ ++ G + AL+G +GAGKTTL+ + G SG +G I+G P
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGR-DITGLP-- 68
Query: 929 QETFARVS---GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEF-VNEVLETI- 983
R GY + P +TVEE+ L L + K + + V E
Sbjct: 69 --PHERARAGIGYVPEGRRIFPELTVEEN------LLLGAYARRRAKRKARLERVYELFP 120
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
L + L G LS +++ L IA L++ P ++ +DEP+ GL + + A+
Sbjct: 121 RLKERRKQLAG-----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI 175
Query: 1044 KNIVNTGRTIV 1054
+ + + G TI+
Sbjct: 176 RELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 25/223 (11%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ET 931
RLL V+ LRPG + A++G +GAGK+TL+ L+G + GE+ ++G P E
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEE 72
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTK--AEFVNEVLETIELDAIK 989
AR Q + TV+E V R+ + + + L +L +
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVEL------VANPSIIFMDEPTTGLDARAAAIVMRAV 1043
LS +++R+ +A L V + +F+DEPT+ LD +R
Sbjct: 130 GRD-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 1044 KNIVNTGRTIVCTIHQPSIDIFEAF-DELILLKTGGRIIYCGP 1085
+ + G ++ +H +++ + D ++LL GR+I G
Sbjct: 185 RQLAREGGAVLAVLH--DLNLAAQYADRIVLLH-QGRVIASGS 224
|
Length = 259 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 64/225 (28%), Positives = 109/225 (48%), Gaps = 23/225 (10%)
Query: 868 GFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927
G+ + R+L D++ SL G +TAL+G +G GK+TL+ A T G + + P
Sbjct: 11 GYGTK--RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPI 66
Query: 928 VQET---FARVSGYCEQTDIHSPNITVEESVIF--SAWLRLAPEINSKTKAEFVNEVLET 982
+ AR Q + ITV E V + S WL L ++++ A VN+ +E
Sbjct: 67 SMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNA-RVNQAMEQ 125
Query: 983 IELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA 1042
++ + D + LS QR+R +A+ L + ++ +DEPTT LD +MR
Sbjct: 126 TRINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRL 180
Query: 1043 VKNIVNTGRTIVCTIHQPSIDIFEA---FDELILLKTGGRIIYCG 1084
++ + G+T+V +H D+ +A D L++L G ++ G
Sbjct: 181 MRELNTQGKTVVTVLH----DLNQASRYCDHLVVLA-NGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 6e-14
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 16/201 (7%)
Query: 862 LEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIK 921
L R + + L ++ +L G + G +G GKTTL+ +LAG GE++
Sbjct: 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVR 58
Query: 922 ISGYP--KVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEV 979
+G + ++ R Y P ++ E++ F W + + +
Sbjct: 59 WNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHF--WAAI-----HGGAQRTIEDA 111
Query: 980 LETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1039
L + L +D LS Q++RL +A ++ + +DEPTT LD A++
Sbjct: 112 LAAVGLTGFEDLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL 166
Query: 1040 MRAVKNIVNTGRTIVCTIHQP 1060
++ + G ++ T HQ
Sbjct: 167 AGLLRAHLARGGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 7e-14
Identities = 62/258 (24%), Positives = 103/258 (39%), Gaps = 57/258 (22%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSG--NLDPSLKVTGEVSYNG---YKLEE 240
L +S + G +T L+GP GCGKST L+ L+ +L P GEV +G Y L+
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 241 FVP--PKTSAYISQ--NDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVP 296
V + + Q N ++ + V + R G+ +E E+ R +EA
Sbjct: 75 DVLELRRRVGMVFQKPNPFP---GSIYDNVAYGLRLHGIKLKE----ELDERVEEA---- 123
Query: 297 DPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEM 356
L+ L D + G+SGGQ++RL
Sbjct: 124 -------------------------LRKAALW---DEVKDRLHALGLSGGQQQRLCLARA 155
Query: 357 IVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI---SLLQPAPETFDLFDD 413
+ + L +DE T+ LD + +I I +L + T +I ++ Q A + D
Sbjct: 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKK--EYTIVIVTHNMQQAA----RVADR 209
Query: 414 IILMAEGKIVYHGPQDHV 431
+ G++V GP + +
Sbjct: 210 TAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 7e-14
Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 24/216 (11%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGR-KTSGYVEGEIKISGY-P-KVQETFARV 935
D++ + G + +G +GAGK+T + +L G + G+++++G P + +E + R
Sbjct: 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS---GKVRVNGKDPFRRREEYLRS 98
Query: 936 SGYC---EQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-IKDS 991
G + V L+L EI AE ++ + E ++L+ +K
Sbjct: 99 IGLVMGQKLQLWWDLPALDSLEV-----LKLIYEIPDDEFAERLDFLTEILDLEGFLKWP 153
Query: 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-G 1050
V LS QR R +A L+ P ++F+DEPT GLD A A + +K
Sbjct: 154 ------VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQ 207
Query: 1051 RTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086
T++ T H DI D ++L+ G++++ G L
Sbjct: 208 ATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 7e-14
Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 21/164 (12%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFAR 934
L DV + G L+G SG GK+TL+ ++AG TSG EI I G T
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSG----EILIDGRDV---TDLP 71
Query: 935 VS----GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKD 990
Q P++TV E++ F L+L ++ V EV + + L+ + +
Sbjct: 72 PEKRGIAMVFQNYALYPHMTVYENIAFG--LKLRGVPKAEIDKR-VKEVAKLLGLEHLLN 128
Query: 991 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
LS QR+R+ +A LV P + +DEP + LDA+
Sbjct: 129 RKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
|
Length = 338 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 9e-14
Identities = 56/255 (21%), Positives = 103/255 (40%), Gaps = 46/255 (18%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L+ VS ++PG + L+GP G GK+T +SG L P+ +G V ++G + P +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEI 72
Query: 247 SAY-IS---QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
+ I Q E+TV E V +A+ + ++ R +E
Sbjct: 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQAR----TGSGLLLARARREEREARE------ 122
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK 362
+ + +L+ +GL AD G +S GQ++RL + K
Sbjct: 123 --------------RAEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPK 163
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI----SLLQPAPETFDLFDDIILMA 418
L +DE GL+ ++ I++L + L+ ++ L D + ++
Sbjct: 164 LLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVV------MSLADRVTVLD 217
Query: 419 EGKIVYHGPQDHVLA 433
+G+++ G D V
Sbjct: 218 QGRVIAEGTPDEVRN 232
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 11/159 (6%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFA-RV 935
L DV + G L AL+G SG+GK+TL+ ++AG + G I+++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
G+ Q ++TV +++ F +R P+ K + V E+LE ++L+ + D
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR---VEELLELVQLEGLGDRY--- 127
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
P N LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 128 P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 55/220 (25%), Positives = 106/220 (48%), Gaps = 24/220 (10%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ET 931
+L DV+ + G +T+++G +GAGK+TL+ +++ + GEI I G +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS--RLLKKDSGEITIDGLELTSTPSKE 72
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFS--AWLRLAPEINSKTKAEFVNEVLETIELDAIK 989
A+ +Q + + +TV + V F + + + +NE +E + L+ +
Sbjct: 73 LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI---INEAIEYLHLEDLS 129
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT 1049
D + + LS QR+R IA+ L + + +DEP LD + + +M+ ++ + +
Sbjct: 130 DRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADE 184
Query: 1050 -GRTIVCTIHQPSIDIFEA---FDELILLKTGGRIIYCGP 1085
G+TIV +H DI A D ++ LK G+++ G
Sbjct: 185 LGKTIVVVLH----DINFASCYSDHIVALKN-GKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE-GEIKISGYPKV 928
K +++ V+ S++ G + L+G +GAGKTT ++ G + SG + I+ P
Sbjct: 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH 70
Query: 929 QETFARVS-GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEF---VNEVLETIE 984
+ AR+ GY Q +TVEE+ + EI +K E + E+LE
Sbjct: 71 KR--ARLGIGYLPQEASIFRKLTVEEN------ILAVLEIRGLSKKEREEKLEELLEEFH 122
Query: 985 LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
+ ++ S LS +R+R+ IA L NP + +DEP G+D A + + +K
Sbjct: 123 ITHLRKSKAS-----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIK 177
Query: 1045 NIVNTGRTIVCTIH 1058
+ + G ++ T H
Sbjct: 178 ILKDRGIGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 16/192 (8%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISG-----YPKVQET 931
L+DV+ +R G L G SGAGKTTL+ +L G T G+++I+G Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVNRLRGRQLP 75
Query: 932 FARVS-GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKD 990
R G Q P+ TV E+V +R E + + V L + L +
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGL---EH 129
Query: 991 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTG 1050
P LS +++R+ IA +V +P ++ DEPT LD + ++ +K + G
Sbjct: 130 KADAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 1051 RTIVCTIHQPSI 1062
T++ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 15/165 (9%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETF 932
L DV+ + G L AL+G SG+GKTTL+ ++AG R SG + + + VQE
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE-- 73
Query: 933 ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEF---VNEVLETIELDAIK 989
R G+ Q ++TV ++V F LR+ P +AE V+E+L+ ++LD +
Sbjct: 74 -RNVGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLKLVQLDWLA 130
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
D P LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 131 DRY---P--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 48/205 (23%), Positives = 99/205 (48%), Gaps = 14/205 (6%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGY 938
D++ S+ G + L+G +GAGKTT + ++ G GE+ G P R+ GY
Sbjct: 18 DISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD--SGEVLFDGKPLDIAARNRI-GY 74
Query: 939 CEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGV 998
+ P + V + +++ A L+ + + ++E LE +EL + V
Sbjct: 75 LPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANK-----RV 126
Query: 999 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIH 1058
LS ++++ ++ +P ++ +DEP +GLD ++ ++ + G+T++ + H
Sbjct: 127 EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTH 186
Query: 1059 QPSIDIFEAF-DELILLKTGGRIIY 1082
Q +++ E D ++LL G ++Y
Sbjct: 187 Q--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 22/205 (10%)
Query: 868 GFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGY 925
G + +L +L V ++ G A++G SG+GK+TL+ VLAG +S GE+++ G
Sbjct: 17 GQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS----GEVRLLGQ 72
Query: 926 P---KVQETFARVS----GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNE 978
P ++ A + G+ Q+ PN+T E+V LR +S+ A+
Sbjct: 73 PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAK---A 129
Query: 979 VLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 1038
+LE + L L P LS +++R+ +A P ++F DEPT LD
Sbjct: 130 LLEAVGLG---KRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDK 184
Query: 1039 VMRAVKNIV-NTGRTIVCTIHQPSI 1062
+ + + G T+V H P +
Sbjct: 185 IADLLFALNRERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 66/259 (25%), Positives = 108/259 (41%), Gaps = 48/259 (18%)
Query: 178 KSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYK 237
KS +K+ + VS + G +T LLG G GK+T L+ ++ L P +G+V+ +G
Sbjct: 9 KSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVD 65
Query: 238 LEE---FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGI 294
FV K + L+ A +T RE + + AR G +SR+E +A
Sbjct: 66 TVRDPSFVRRKIGVLFGERGLY-ARLTARENLKYFARLNG----------LSRKEIKA-- 112
Query: 295 VPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTG 354
+ + K L L D VG S G K+++
Sbjct: 113 ----------------------RIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIA 145
Query: 355 EMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDI 414
+V L +DE T+GLD T + I+QL + + A+I E L D +
Sbjct: 146 RALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDRV 203
Query: 415 ILMAEGKIVYHGPQDHVLA 433
I++ +G++V G + + A
Sbjct: 204 IVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 3e-13
Identities = 64/231 (27%), Positives = 107/231 (46%), Gaps = 37/231 (16%)
Query: 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPK 927
+ L DV+ + G + ++G SGAGK+TL+ ++ R TSG +V+G+ ++ +
Sbjct: 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQ-DLTALSE 75
Query: 928 VQETFARVS-GYCEQTDIHSPNI----TVEESVIFSAWLRLAPEINSKTKAEF-VNEVLE 981
+ R G Q H N+ TV E+V F L LA K + + V E+LE
Sbjct: 76 AELRQLRQKIGMIFQ---H-FNLLSSRTVFENVAFP--LELAGV--PKAEIKQRVAELLE 127
Query: 982 TIELDAIKDSLVGIPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036
LVG+ LS Q++R+ IA L NP I+ DE T+ LD
Sbjct: 128 ----------LVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT 177
Query: 1037 AIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086
++ +K+I G TIV H+ +++ + + + + GR++ G +
Sbjct: 178 QSILELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQGRLVEEGTV 226
|
Length = 339 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-13
Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 33/234 (14%)
Query: 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKV 928
++ + DV+ + PG + ++G SG+GK+TL L G + GE+ + G +
Sbjct: 19 GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLL 78
Query: 929 QET-------FARVSGYCEQTDIHS--PNITVEESVIFSAWLRLAPEINSKTKAEFVNEV 979
+ + Q + S P +T+ + + + L ++AE
Sbjct: 79 GLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH-----GKGSRAEARKRA 133
Query: 980 LETIELDAIKDSLVGIPGVNG-------LSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
+E +E VG+P LS R+R+ IA+ L P ++ DEPTT LD
Sbjct: 134 VELLEQ-------VGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALD 186
Query: 1033 ARAAAIVMRAVKNIV-NTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
A ++ +K++ G ++ H + + E D ++++ G I+ GP
Sbjct: 187 VTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMY-KGEIVETGP 238
|
Length = 539 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 4e-13
Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 54/261 (20%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTS--AYIS 251
++ G +LLGP GCGKST L+ ++G +P+ +GE+ +G + + +PP+ A +
Sbjct: 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTD-LPPEKRGIAMVF 81
Query: 252 QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKG 311
QN MTV E + F + +GV + E+ +R KE
Sbjct: 82 QNYALYPHMTVYENIAFGLKLRGV-PKA----EIDKRVKEV------------------- 117
Query: 312 VKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITN 371
K+LGL+ + N +SGGQ++R+ +V K +DE +
Sbjct: 118 ----------AKLLGLE-----HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLS 162
Query: 372 GLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHV 431
LD+ + + I++L +T + E L D I++M +G+I G +
Sbjct: 163 NLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLEL 221
Query: 432 LAFFEDCGFRCPERKGVSDFL 452
+ P V+ F+
Sbjct: 222 --------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 4e-13
Identities = 53/235 (22%), Positives = 98/235 (41%), Gaps = 43/235 (18%)
Query: 866 ERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYV------- 916
E+ D L++ +D+ +T + G SGAGK+TL+ +AG + G +
Sbjct: 7 EKRLPDFTLKIDFDL-----NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVL 61
Query: 917 -EGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEF 975
+ KI+ P+ R G Q P++ V E++ F ++
Sbjct: 62 FDSRKKINLPPQ-----QRKIGLVFQQYALFPHLNVRENLAFGL-----KRKRNREDRIS 111
Query: 976 VNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARA 1035
V+E+L+ + LD + + LS +++R+ +A L A P ++ +DEP + LD
Sbjct: 112 VDELLDLLGLDHLLNR-----YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRAL 166
Query: 1036 AAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDEL------ILLKTGGRIIYCG 1084
++ +K I ++ P I + E I++ GR+ Y G
Sbjct: 167 RLQLLPELKQIKK-------NLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 5e-13
Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 30/229 (13%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFAR 934
L V+ ++RPG + AL+G +GAGK+TLM +L+G GEI I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKP------VA 73
Query: 935 VSGYCEQTD-----IH-----SPNITVEESVIFSAWL-RLAPEINSKTKAEFVNEVLETI 983
S + +H PN++V E++ R I+ K E+L +
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL 133
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
LD D+LVG LS QR+ + IA L + ++ +DEPT L + + +
Sbjct: 134 GLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI 188
Query: 1044 KNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQ 1092
+ + G I+ H+ ++FE D + +L+ GR++ P +S+
Sbjct: 189 RRLKAQGVAIIYISHRLD-EVFEIADRITVLR-DGRVVGTRPTAAETSE 235
|
Length = 500 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 6e-13
Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 27/220 (12%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
L DV+ ++ G L ++G SG GKTTL++++AG T G I+++G R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
G Q + P + V ++V F L+L I + E +++L + L+ + +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFG--LQLR-GIEKAQRREIAHQMLALVGLEGAEHKYIW- 131
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA----RAAAIVMRAVKNIVNTGR 1051
LS R+R+ IA L P ++ +DEP LDA + +++ + TG+
Sbjct: 132 ----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ---ETGK 184
Query: 1052 TIVCTIHQPSIDIFEAF---DELILLKTG-GRIIYCGPLG 1087
++ H DI EA L++L G GR++ PL
Sbjct: 185 QVLLITH----DIEEALFLATRLVVLSPGPGRVVERLPLD 220
|
Length = 259 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 6e-13
Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 26/217 (11%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFAR 934
+ L D++ R G + ALMG +GAGK+TL+ +L+G G I I G FA
Sbjct: 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMR---FAS 72
Query: 935 VSGYCEQ--TDIH-----SPNITVEESVIFSAWLRLAPE----INSKTKAEFVNEVLETI 983
+ I+ P +TV E++ +L P +N + E LE +
Sbjct: 73 TTAALAAGVAIIYQELHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHL 128
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
+D D+ + LS QR+ + IA L N +I DEPT+ L AR + R +
Sbjct: 129 GVDIDPDTPLK-----YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI 183
Query: 1044 KNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080
+ + GR I+ H+ +IF D + + K G +
Sbjct: 184 RELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYV 219
|
Length = 501 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 7e-13
Identities = 49/207 (23%), Positives = 83/207 (40%), Gaps = 63/207 (30%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFAR 934
L V+ S+R G + AL+G +GAGK+TLM +L+G + SG EI + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSG----EILVDG---------- 61
Query: 935 VSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVG 994
++ SP DA + G
Sbjct: 62 -----KEVSFASPR-------------------------------------DARR---AG 76
Query: 995 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIV 1054
I V LS +R+ + IA L N ++ +DEPT L + + ++ + G ++
Sbjct: 77 IAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
Query: 1055 CTIHQPSIDIFEAFDELILLKTGGRII 1081
H+ ++FE D + +L+ GR++
Sbjct: 137 FISHRLD-EVFEIADRVTVLR-DGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 8e-13
Identities = 64/245 (26%), Positives = 105/245 (42%), Gaps = 36/245 (14%)
Query: 856 YYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY 915
Y L +RERG +++ + DV+ LR G L+G SG+GK+TL +LAG
Sbjct: 290 YGSRKGLFVRERG----EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-- 343
Query: 916 VEGEIKISGYPKVQETFARVSGYCEQTDI--------HSPNITVEESVIFSAWLRLAPEI 967
G I G + T + + + +P +TV + + LR+
Sbjct: 344 SSGSIIFDGQD-LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGG 400
Query: 968 NSKTKAEFVNEVLETIELDAIKDSLVGIPG------VNGLSTEQRKRLTIAVELVANPSI 1021
+ + V E+LE LVG+P + LS QR+R+ IA L P +
Sbjct: 401 SGAERRARVAELLE----------LVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKL 450
Query: 1022 IFMDEPTTGLDARAAAIVMRAVKNIV-NTGRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080
+ +DEP + LD A V+ +K++ G T + H + + + + + GRI
Sbjct: 451 LILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISH--DLAVVRYIADRVAVMYDGRI 508
Query: 1081 IYCGP 1085
+ GP
Sbjct: 509 VEEGP 513
|
Length = 539 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 8e-13
Identities = 62/258 (24%), Positives = 108/258 (41%), Gaps = 59/258 (22%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
IL +S + PG+ L+G GCGKST + L DP+ +GE+ +G + +
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRW 74
Query: 246 TS---AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
+SQ + + + T+ E + + G + T EV K+A I
Sbjct: 75 LRSQIGLVSQ-EPVLFDGTIAENIRY-------GKPDATDEEVEEAAKKANI-------- 118
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG--ISGGQKKRLTTGEMIVGP 360
D+I+ L DT+VG RG +SGGQK+R+ ++
Sbjct: 119 ---------------HDFIMS---LPDGYDTLVGE---RGSQLSGGQKQRIAIARALLRN 157
Query: 361 TKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPETFDLFDDII 415
K L +DE T+ LD+ + + + + + T ++ S ++ A D I
Sbjct: 158 PKILLLDEATSALDAESEKLVQEALDRA--MKGRTTIVIAHRLSTIRNA-------DLIA 208
Query: 416 LMAEGKIVYHGPQDHVLA 433
++ G++V G D ++A
Sbjct: 209 VLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 57/250 (22%), Positives = 93/250 (37%), Gaps = 57/250 (22%)
Query: 179 SLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKL 238
S + IL+ +S L G + L G G GK+T K L+G + S +G + NG +
Sbjct: 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPI 64
Query: 239 EEFVPPKTSAYISQN-DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
+ K+ Y+ Q+ D + +VRE + KE
Sbjct: 65 KAKERRKSIGYVMQDVDYQLFTDSVREELLLGL-------------------KELD---- 101
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMI 357
Q + +LK L L + +SGGQK+RL +
Sbjct: 102 ---------------AGNEQAETVLKDLDLYALKE-----RHPLSLSGGQKQRLAIAAAL 141
Query: 358 VGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALIS----LLQPAPETFDLFDD 413
+ L DE T+GLD ++ I++L + +I+ L + D
Sbjct: 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFL------AKVCDR 195
Query: 414 IILMAEGKIV 423
++L+A G IV
Sbjct: 196 VLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-12
Identities = 53/200 (26%), Positives = 82/200 (41%), Gaps = 39/200 (19%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L+ VS L PG +LGP G GKST L L+G LDP GEV+ +G + +
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 246 TSAYIS--QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTY 303
+S D H+ + TVRE + + + EE + R G+
Sbjct: 407 VRRRVSVCAQDAHLFDTTVRENLRLAR---PDATDEE-LWAALER---VGLADWLR---- 455
Query: 304 MKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKA 363
L DT++G R +SGG+++RL ++
Sbjct: 456 ----------------------ALPDGLDTVLGEGGAR-LSGGERQRLALARALLADAPI 492
Query: 364 LFMDEITNGLDSSTAYQIIA 383
L +DE T LD+ TA +++
Sbjct: 493 LLLDEPTEHLDAETADELLE 512
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 14/210 (6%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE-GEIKISGYPKVQETFA 933
L DV+ + G L G SGAGK+TL+ ++ G R T G + +S + F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 934 RVS-GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL 992
R G Q P+ TV E+V + K E V E ++L +K
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVAL------PLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRT 1052
+P + LS +++R+ IA +V P+++ DEPT LD + +MR + I G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1053 IVCTIHQPSIDIFEAFDELILLKTGGRIIY 1082
++ H +++ +L GR++
Sbjct: 190 VLMATH--DLELVNRMRHRVLALEDGRLVR 217
|
Length = 223 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 1e-12
Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 21/219 (9%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP----KVQE 930
+L V S+R G L L+G +GAGKTTL+ + G T G + ++G +
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARA 74
Query: 931 TFARVSGYCEQTDIHSPNITVEESVIFSA---WLRLAPEINSKTKAEFVNEVLETIELDA 987
RV+ + T + S V + V R + A V +E +
Sbjct: 75 ASRRVASVPQDTSL-SFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTGVAQ 131
Query: 988 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047
D V LS +R+R+ +A L ++ +DEPT LD + V+ +V
Sbjct: 132 FADR-----PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV 186
Query: 1048 NTGRTIVCTIHQPSIDIFEAF-DELILLKTGGRIIYCGP 1085
+ G+T V IH +D+ + DEL+LL GR+ GP
Sbjct: 187 DDGKTAVAAIH--DLDLAARYCDELVLL-ADGRVRAAGP 222
|
Length = 402 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-12
Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 46/218 (21%)
Query: 887 GVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYP---------KVQETFARV 935
G + AL+G +GAGK+TL G + TSG E+ I G P +V++T V
Sbjct: 28 GEMVALLGPNGAGKSTLFLHFNGILKPTSG----EVLIKGEPIKYDKKSLLEVRKTVGIV 83
Query: 936 SGYCEQTD--IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL- 992
+ D + +P TVEE V F +N E V + +K++L
Sbjct: 84 F---QNPDDQLFAP--TVEEDVAFGP-------LNLGLSKEEVEK--------RVKEALK 123
Query: 993 -VGIPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046
VG+ G LS Q+KR+ IA L P II +DEPT+GLD A+ +M+ + ++
Sbjct: 124 AVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL 183
Query: 1047 VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
G TI+ + H +D+ + + + + + G+II G
Sbjct: 184 NKEGITIIISTHD--VDLVPVYADKVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 1e-12
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 45/215 (20%)
Query: 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY--VEGEIKISGYPKV 928
+ K +L V +++ G + A+MG +G+GK+TL + G Y EGEI G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH--PKYEVTEGEILFDG---- 67
Query: 929 QETFARVSGYCEQTDIHSPNITVEESV---IFSAW--------------LRLAPEINSKT 971
DI ++ +E IF A+ LR A
Sbjct: 68 -------------EDI--LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGA 112
Query: 972 KA---EFVNEVLETIELDAIKDSLVGIPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEP 1027
+ EF+ E+ E EL + + + VN G S ++KR I L+ P + +DEP
Sbjct: 113 RGILPEFIKELKEKAELLGLDEEFLE-RYVNEGFSGGEKKRNEILQLLLLEPKLAILDEP 171
Query: 1028 TTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSI 1062
+GLD A IV + + GR ++ H +
Sbjct: 172 DSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-12
Identities = 54/226 (23%), Positives = 87/226 (38%), Gaps = 52/226 (23%)
Query: 176 GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG 235
Y + L +S ++ G L+GP GCGKST L+ ++G P+ +GEV +G
Sbjct: 9 TYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDG 65
Query: 236 YKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIV 295
+ P Y+ Q D + +TV + V QGV E RE
Sbjct: 66 EPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAE-------ARE------ 110
Query: 296 PDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRL---- 351
+ + +L+++GL NA +SGG ++R+
Sbjct: 111 ---------------------RAEELLELVGLSGFE-----NAYPHQLSGGMRQRVALAR 144
Query: 352 TTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTAL 397
+ V P L +DE + LD+ T Q+ + + T T L
Sbjct: 145 A---LAVDP-DVLLLDEPFSALDALTREQLQEELLDIWRETGKTVL 186
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-12
Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 30/228 (13%)
Query: 869 FADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISG 924
+ ++K + DV ++ G L+G SG+GKTT + ++ TSG ++GE IS
Sbjct: 11 YGNKKA--VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGE-DISD 67
Query: 925 YPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEI---NSKTKAEFVNEVLE 981
V R GY Q P++TV E++ P++ + + + +E+L+
Sbjct: 68 LDPV--ELRRKIGYVIQQIGLFPHLTVAENIA------TVPKLLGWDKERIKKRADELLD 119
Query: 982 TIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMR 1041
+ LD + P + LS Q++R+ +A L A+P I+ MDEP LD +
Sbjct: 120 LVGLDP-SEYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQE 176
Query: 1042 AVKNI-VNTGRTIVCTIHQPSIDIFEAF---DELILLKTGGRIIYCGP 1085
+K + G+TIV H DI EA D + ++ G I+
Sbjct: 177 EIKELQKELGKTIVFVTH----DIDEALKLADRIAVMD-AGEIVQYDT 219
|
Length = 309 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-12
Identities = 55/203 (27%), Positives = 86/203 (42%), Gaps = 22/203 (10%)
Query: 862 LEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGE 919
LE E L ++ +L G + G +G+GKTTL+ +LAG G
Sbjct: 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGR 56
Query: 920 IKISGYP--KVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVN 977
+ ++G P +++ AR Y ++V E+ LR +S E V
Sbjct: 57 VLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLEN------LRFWHADHSD---EQVE 107
Query: 978 EVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 1037
E L + L+ +D P V LS Q++R+ +A L++ + +DEPTT LD A
Sbjct: 108 EALARVGLNGFED----RP-VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVA 162
Query: 1038 IVMRAVKNIVNTGRTIVCTIHQP 1060
A+ G +V T HQ
Sbjct: 163 RFAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-12
Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 13/217 (5%)
Query: 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP--KV 928
K +L D++ S+ PG A++G SG+GK+TL+ +L R GEI I G +
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLL-RLYDPT-SGEILIDGIDIRDI 396
Query: 929 QETFARVS-GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA 987
R G Q D + T+ E++ EI K +E + L
Sbjct: 397 SLDSLRKRIGIVSQ-DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIA--NLPD 453
Query: 988 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047
D++VG GVN LS QR+RL IA L+ NP I+ +DE T+ LD A++ A+K ++
Sbjct: 454 GYDTIVGERGVN-LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL 512
Query: 1048 NTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
GRT + H+ S + D +I+L GRI+ G
Sbjct: 513 K-GRTTLIIAHRLS--TIKNADRIIVLDN-GRIVERG 545
|
Length = 567 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 2e-12
Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 27/219 (12%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFAR 934
L D + ++ G + AL+GV+G+GK+TL L G R SG +I I G P Q
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASG----KISILGQPTRQALQKN 78
Query: 935 VSGYC---EQTDIHSPNITVEESVIFS-----AWLRLAPEINSKTKAEFVNEVLETIELD 986
+ Y E+ D P + VE+ V+ WLR A K + V L +++
Sbjct: 79 LVAYVPQSEEVDWSFP-VLVEDVVMMGRYGHMGWLRRA----KKRDRQIVTAALARVDMV 133
Query: 987 AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046
+ +G LS Q+KR+ +A + +I +DEP TG+D + A ++ ++ +
Sbjct: 134 EFRHRQIG-----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL 188
Query: 1047 VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
+ G+T++ + H + E D +++K G ++ GP
Sbjct: 189 RDEGKTMLVSTHNLG-SVTEFCDYTVMVK--GTVLASGP 224
|
Length = 272 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 61/209 (29%), Positives = 106/209 (50%), Gaps = 15/209 (7%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQE----TF 932
L D++ + G AL+G SG+GK+TL++++ + G I I G+ V++ +
Sbjct: 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGH-DVRDYTLASL 74
Query: 933 ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL 992
R G Q D+ N TV E++ + E+ +A +E + EL D++
Sbjct: 75 RRQIGLVSQ-DVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIM--ELPEGYDTV 131
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRT 1052
+G GV LS QR+R+ IA L+ +P I+ +DE T+ LD + +V A++ ++ RT
Sbjct: 132 IGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRT 189
Query: 1053 IVCTIHQPSIDIFEAFDELILLKTGGRII 1081
H+ S I A D +++L G+I+
Sbjct: 190 TFVIAHRLST-IENA-DRIVVL-EDGKIV 215
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-12
Identities = 65/278 (23%), Positives = 107/278 (38%), Gaps = 71/278 (25%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVT-GEVSYNG 235
+ + ++ + VS ++PG + ++G G GKST AL G L ++T GEV +G
Sbjct: 15 FATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDG 74
Query: 236 YKLEEFVPP-------KTSAYISQ------NDLHIAEMTVRETVDFSARCQGVGSREETM 282
L K A I Q N + MT+ + + + R G GSR E
Sbjct: 75 RDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPV----MTIGDQIREALRLHGKGSRAE-- 128
Query: 283 MEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG 342
K A +L+ +GL D +
Sbjct: 129 -----ARKRA--------------------------VELLEQVGLP---DPERRDRYPHQ 154
Query: 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVH--------ITDS 394
+SGG ++R+ + K L DE T LD +T QI+ ++ L IT
Sbjct: 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD 214
Query: 395 TALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVL 432
+++ +L D +++M +G+IV GP + +L
Sbjct: 215 LGVVA---------ELADRVVVMYKGEIVETGPTEEIL 243
|
Length = 539 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 63/259 (24%), Positives = 114/259 (44%), Gaps = 41/259 (15%)
Query: 867 RGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGR--KTSGYVE-GEIKIS 923
+G K R L ++ + G ++G +GAGK+TL++ +AG TSG + + ++
Sbjct: 13 KGTPLEK-RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVT 71
Query: 924 GYPKVQ--ETFARV-----SGYCEQTDIHSPNITVEESVIFSAWLR-----LAPEINSKT 971
+ ARV +G P +T+EE++ A R L+ +N +
Sbjct: 72 KKSVAKRANLLARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALNERR 123
Query: 972 KAEFVNEVLET-IELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1030
++ F + + L+ +G+ LS QR+ L++ + + P I+ +DE T
Sbjct: 124 RSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAA 178
Query: 1031 LDARAAAIVMRAVKNIVNTGR-TIVCTIH--QPSIDIFEAFDELILLKTGGRII--YCGP 1085
LD + A VM IV + T + H + ++D + LI+L G+I+ G
Sbjct: 179 LDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDY---GNRLIMLH-SGKIVLDVTGE 234
Query: 1086 LGKHSSQ--VIEYFEGISG 1102
+ +I+ FE I G
Sbjct: 235 EKASLTVLDLIQMFEKIRG 253
|
Length = 263 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 28/196 (14%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIKISG---Y-PK 927
DV ++ P +TA +G SG GK+T++ +V+ G VEGE+ + G Y P
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPG----ARVEGEVLLDGEDLYGPG 77
Query: 928 VQE-TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL- 985
V R G Q P +++ ++V+ A L+L N K E V + L L
Sbjct: 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLW 135
Query: 986 DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045
+ +KD L PG GLS Q++RL IA + P ++ MDEP + LD I A+++
Sbjct: 136 NEVKDRL-DKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD----PISTLAIED 189
Query: 1046 IVNTGR---TIVCTIH 1058
++N + TIV H
Sbjct: 190 LINELKQDYTIVIVTH 205
|
Length = 258 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 4e-12
Identities = 57/257 (22%), Positives = 97/257 (37%), Gaps = 76/257 (29%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP- 244
L+ VS L PG M LLGP G GK+T ++ L+ PS +G + +G + +
Sbjct: 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKL 70
Query: 245 -KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTY 303
+ Y+ Q TVRE +D+ A +G+ S+ K
Sbjct: 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI---------PSKEVKA------------ 109
Query: 304 MKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKA 363
+ D +L+++ L A +G +SGG ++R+ + +VG
Sbjct: 110 -------------RVDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSI 151
Query: 364 LFMDEITNGLD--------------SSTAYQIIACIQQLVHITDSTALISLLQPAPETFD 409
L +DE T GLD I++ HI +
Sbjct: 152 LIVDEPTAGLDPEERIRFRNLLSELGEDRIVILS-----THIVEDVE------------S 194
Query: 410 LFDDIILMAEGKIVYHG 426
L + + ++ +GK+V+ G
Sbjct: 195 LCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 4e-12
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 12/205 (5%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFAR 934
+L D++ + G L AL+G SG GKTTL+ +AG + + G I I+ R
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 935 VSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVG 994
Q P++ VE++V F LR A ++ AE V + L+ + L D+
Sbjct: 80 GLALLFQNYALFPHLKVEDNVAFG--LR-AQKMPKADIAERVADALKLVGLG---DAAAH 133
Query: 995 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT--GRT 1052
+P LS ++R+ IA + P ++ +DEP + LDA A + + + T
Sbjct: 134 LP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT 191
Query: 1053 IVCTIHQPSIDIFEAFDELILLKTG 1077
I+C H D D+ ++K G
Sbjct: 192 ILCVTHDQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 51/204 (25%), Positives = 95/204 (46%), Gaps = 46/204 (22%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKLEEFVPP 244
LN VS P +T L+GP G GKST L++++ +L+P + +TG + YNG+ + P
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI---YSP 77
Query: 245 KTSAYISQNDLHIA-------EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
+T + ++ + M++ E V + R +G+ ++K+ V D
Sbjct: 78 RTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGI------------KDKQ---VLD 122
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMI 357
++ +K S+ D D + +A+ G+SGGQ++R+ ++
Sbjct: 123 EAVEKSLKGASI-----------------WDEVKDRLHDSAL--GLSGGQQQRVCIARVL 163
Query: 358 VGPTKALFMDEITNGLDSSTAYQI 381
K + +DE T+ LD +A +I
Sbjct: 164 ATSPKIILLDEPTSALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 33/211 (15%)
Query: 883 SLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQT 942
S G L L+G +GAGKTTL+ + G +G +K++G + R GY Q
Sbjct: 2 SADKGELLGLLGPNGAGKTTLLRAILG--LIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 943 DIHSPN--ITVEESVI-----FSAWLRLAPEINSKTKAEF--VNEVLETIELDAIKDSLV 993
+ + I+V +V+ WLR A+F V + L + L + D V
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHIGWLR------RPCVADFAAVRDALRRVGLTELADRPV 111
Query: 994 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTI 1053
G LS QR+R+ +A L PS++ +DEP TGLD ++ + G I
Sbjct: 112 G-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAI 166
Query: 1054 VCTIHQPSIDIFEAF---DELILLKTGGRII 1081
+ T H D+ +A D ++LL GR+I
Sbjct: 167 LMTTH----DLAQAMATCDRVVLLN--GRVI 191
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 5e-12
Identities = 50/197 (25%), Positives = 104/197 (52%), Gaps = 13/197 (6%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG---RKTSGYVEGEIKISGYPKVQET 931
R++ DV+ ++ G + L+G +GAGKTT ++ G R + + IS P +
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP-LHAR 75
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDS 991
R GY Q ++V ++++ A L++ +++++ + + NE++E ++ ++DS
Sbjct: 76 ARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDS 133
Query: 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGR 1051
+ LS +R+R+ IA L ANP I +DEP G+D + + R ++++ ++G
Sbjct: 134 MG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGL 188
Query: 1052 TIVCTIH--QPSIDIFE 1066
++ T H + ++ + E
Sbjct: 189 GVLITDHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 5e-12
Identities = 65/207 (31%), Positives = 96/207 (46%), Gaps = 48/207 (23%)
Query: 840 MVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAG 899
+L E L+V+F GF + L D++ + PG L ++G +GAG
Sbjct: 1 PILYLEGLSVSFD---------------GF-----KALNDLSLYVDPGELRVIIGPNGAG 40
Query: 900 KTTLMDVLAG--RKTSGYVE-GEIKISGYPKVQETFARVSGYCE--QTDIHSPNITVEE- 953
KTT+MDV+ G R G V G ++G P+ Q AR +G Q N+TV E
Sbjct: 41 KTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ--IAR-AGIGRKFQKPTVFENLTVFEN 97
Query: 954 ---------SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTE 1004
SV S + RL+ E + + EVLETI L D L G+ LS
Sbjct: 98 LELALPRDKSVFASLFFRLSAEEKDR-----IEEVLETIGLADEADRLAGL-----LSHG 147
Query: 1005 QRKRLTIAVELVANPSIIFMDEPTTGL 1031
Q++ L I + L+ +P ++ +DEP G+
Sbjct: 148 QKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 18/212 (8%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPKVQETF 932
L +V+ + G ++G +G+GK+ L++ +AG + SG + G+ I+ P +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGK-DITNLPPEKRDI 73
Query: 933 ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL 992
Y Q P++TV +++ + R K E +VLE E+ I L
Sbjct: 74 ----SYVPQNYALFPHMTVYKNIAYGLKKRKVD------KKEIERKVLEIAEMLGIDHLL 123
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRT 1052
P LS +++R+ IA LV NP I+ +DEP + LD R + +K I
Sbjct: 124 NRKPET--LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV 181
Query: 1053 IVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
V + + + D++ ++ G++I G
Sbjct: 182 TVLHVTHDFEEAWALADKVAIML-NGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (165), Expect = 6e-12
Identities = 62/215 (28%), Positives = 102/215 (47%), Gaps = 13/215 (6%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE-GEIKISGYPKVQET 931
R L+D+ ++ G TAL+G +G+GK+TL+ L G + T G V G+I +S K +E
Sbjct: 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79
Query: 932 --FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK 989
+ G Q + EE+V+ + P+ K + E +E+ +
Sbjct: 80 KPVRKKVGVVFQ---FPESQLFEETVLKD--VAFGPQNFGIPKEKAEKIAAEKLEMVGLA 134
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT 1049
D LS Q +R+ IA L P ++ +DEPT GLD +A +M+ ++I +
Sbjct: 135 DEFWEKSPFE-LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS 193
Query: 1050 GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
G+T+V H +D + + + L G II CG
Sbjct: 194 GQTVVLVTHL--MDDVADYADYVYLLEKGHIISCG 226
|
Length = 288 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 6e-12
Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 31/190 (16%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEG-EIKISGYPK------ 927
DV+ S++ G + AL+G +GAGK+TLM +L G + SG V+G E++I P+
Sbjct: 22 DVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKS-PRDAIRLG 80
Query: 928 ---VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 984
V + F V P +TV E++I I+ + + E+ E
Sbjct: 81 IGMVHQHFMLV-----------PTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYG 129
Query: 985 LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
L D+ V LS +++R+ I L ++ +DEPT L + A + ++
Sbjct: 130 LPVDPDAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILR 184
Query: 1045 NIVNTGRTIV 1054
+ G+TI+
Sbjct: 185 RLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 7e-12
Identities = 73/273 (26%), Positives = 117/273 (42%), Gaps = 37/273 (13%)
Query: 847 LTVAFQDLK--YYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLM 904
+ + Q++ Y TP E R L+DV ++ G TA +G +G+GK+T+M
Sbjct: 1 MGINLQNVSYTYQAGTPFEGRA----------LFDVNLTIEDGSYTAFIGHTGSGKSTIM 50
Query: 905 DVLAG--RKTSGYVE-GEIKISGYPK------VQETFARVSGYCEQTDIHSPNITVEESV 955
+L G T G V + I+ K +++ V + E TV + V
Sbjct: 51 QLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEE---TVLKDV 107
Query: 956 IFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVEL 1015
F P+ ++ E E + L I +SL LS Q +R+ IA L
Sbjct: 108 AF------GPQNFGVSQEEAEALAREKLALVGISESLFEKNPFE-LSGGQMRRVAIAGIL 160
Query: 1016 VANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075
P I+ +DEPT GLD + +M K + +G TIV H +D + + + +
Sbjct: 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHL--MDDVANYADFVYVL 218
Query: 1076 TGGRIIYCG-PLGKHSSQVIEYFEGIS-GVPKI 1106
G+++ G P K Q +++ E GVPKI
Sbjct: 219 EKGKLVLSGKP--KDIFQDVDFLEEKQLGVPKI 249
|
Length = 280 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 7e-12
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 23/191 (12%)
Query: 862 LEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVE 917
LE+++ G+ ++L +++ S+R G A+ G SG GK+TL+ ++A TSG E
Sbjct: 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFE 63
Query: 918 GEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVN 977
GE +S K + +VS YC QT + TVE+++IF +R N +
Sbjct: 64 GE-DVSTL-KPEAYRQQVS-YCAQTPALFGD-TVEDNLIFPWQIR-----NRRPDRAAAL 114
Query: 978 EVLETIELDA-IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036
++L L I + LS +++R+ + L P I+ +DE T+ LD
Sbjct: 115 DLLARFALPDSILTK-----NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169
Query: 1037 AIVMRAVKNIV 1047
R ++ ++
Sbjct: 170 ----RNIEEMI 176
|
Length = 223 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 7e-12
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 19/164 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY-VEGEIKISG-----YPKVQ 929
LL +V ++ G + LMG SG GK+TL+ + G + GE+ ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 930 ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK 989
R G Q + P+++V ++++F+ L + + N LE LD
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 1033
P LS QR R+ + L+A P + +DEP + LD
Sbjct: 129 HQD---PAT--LSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 8e-12
Identities = 62/273 (22%), Positives = 112/273 (41%), Gaps = 58/273 (21%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L+ V+ + G + LLGP G GKST L+ ++G P +G + NG
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDR 72
Query: 247 S-AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
++ Q+ +TVR+ + F +E+ + K +K
Sbjct: 73 KIGFVFQHYALFKHLTVRDNIAFG-------------LEIRKHPKAK-----------IK 108
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
A + + +L+++ L +G+ +SGGQ++R+ + + L
Sbjct: 109 A----------RVEELLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQVLL 153
Query: 366 MDEITNGLDSSTAYQIIACIQQL---VHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422
+DE LD+ ++ + +++L VH+T T ++ Q E ++ D I++M+ GKI
Sbjct: 154 LDEPFGALDAKVRKELRSWLRKLHDEVHVT--TVFVTHDQ--EEAMEVADRIVVMSNGKI 209
Query: 423 VYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEV 455
G D V + P V FL EV
Sbjct: 210 EQIGSPDEV--------YDHPANPFVMSFLGEV 234
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 8e-12
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 31/195 (15%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYV--EGEIKISGYPKV 928
K++ L V+ + G + AL+G +GAGKTTL+ + G R SG + +GE I+G P
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGE-DITGLP-- 71
Query: 929 QETFARVS---GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-- 983
R Y + P +TVEE+ L L +A+ LE +
Sbjct: 72 --PHERARLGIAYVPEGRRIFPRLTVEEN------LLLGAYARRDKEAQ--ERDLEEVYE 121
Query: 984 ---ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM 1040
L ++ G LS +++ L IA L++ P ++ +DEP+ GL + +
Sbjct: 122 LFPRLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 176
Query: 1041 RAVKNIV-NTGRTIV 1054
A+K + G TI+
Sbjct: 177 EAIKELRKEGGMTIL 191
|
Length = 237 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 9e-12
Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 19/163 (11%)
Query: 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQ 929
K + +++ ++ + L+G +GAGK+TL+ ++ G R TSG EI G+P +
Sbjct: 11 GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG----EIIFDGHPWTR 66
Query: 930 ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK 989
+ ++ E ++ N+T E++ L P+ ++EVL ++L
Sbjct: 67 KDLHKIGSLIESPPLYE-NLTARENLKVHTTLLGLPD-------SRIDEVLNIVDLTNTG 118
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
S ++RL IA+ L+ +P ++ +DEPT GLD
Sbjct: 119 KKKAK-----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 9e-12
Identities = 74/246 (30%), Positives = 110/246 (44%), Gaps = 43/246 (17%)
Query: 862 LEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY----VE 917
+E+R+ + ++ +L V + +TALMG SG+GK+TL+ V R Y V
Sbjct: 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRLIELYPEARVS 62
Query: 918 GEIKISGYP----KVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEIN--SKT 971
GE+ + G V E RV Q PN+++ E+V L ++N K+
Sbjct: 63 GEVYLDGQDIFKMDVIELRRRVQ-MVFQIPNPIPNLSIFENVA------LGLKLNRLVKS 115
Query: 972 KAEF---VNEVLETIEL-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1027
K E V LE +L D +KD L G LS Q++RL IA L P ++ DEP
Sbjct: 116 KKELQERVRWALEKAQLWDEVKDRLDAPAG--KLSGGQQQRLCIARALAFQPEVLLADEP 173
Query: 1028 TTGLD----ARAAAIVMRAVKNIVNTGRTIVCTIHQPS----IDIFEAFDELILLKTGGR 1079
T LD A+ ++ + K++ TIV H P I + AF G+
Sbjct: 174 TANLDPENTAKIESLFLELKKDM-----TIVLVTHFPQQAARISDYVAF------LYKGQ 222
Query: 1080 IIYCGP 1085
I+ GP
Sbjct: 223 IVEWGP 228
|
Length = 250 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 64.3 bits (158), Expect = 1e-11
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
Y A L+ +S ++ G + LLGP G GK+T +K + G L P +GE+ G
Sbjct: 10 YGKKTA----LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGK 62
Query: 237 ---KLEEFVPPKTSAYISQNDLHIAEMTVRETVDFS 269
K E V + Y+ + +TVRE + S
Sbjct: 63 DIKKEPEEVKRRI-GYLPEEPSLYENLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 64.3 bits (158), Expect = 1e-11
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-- 243
+L VS +KPG ++GP G GKST LK L DP+ +GE+ +G L +
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES 73
Query: 244 -PKTSAYISQNDLHIAEMTVRE 264
K AY+ Q+ + T+RE
Sbjct: 74 LRKNIAYVPQDP-FLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 1e-11
Identities = 56/263 (21%), Positives = 97/263 (36%), Gaps = 65/263 (24%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV 242
K IL VS + G + LLG G GK+T LK + G L P +G + ++G +
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLP 68
Query: 243 PPKTS----AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEV--------SRREK 290
P + + Y+ + E+TV E + A + R+ + V RR++
Sbjct: 69 PHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQ 128
Query: 291 EAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKR 350
AG TL SGG+++
Sbjct: 129 LAG---------------------TL---------------------------SGGEQQM 140
Query: 351 LTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL 410
L ++ K L +DE + GL +I I++L + ++ + Q A ++
Sbjct: 141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL--RDEGVTILLVEQNARFALEI 198
Query: 411 FDDIILMAEGKIVYHGPQDHVLA 433
D ++ G++V G +LA
Sbjct: 199 ADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 62/276 (22%), Positives = 118/276 (42%), Gaps = 59/276 (21%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNG-----YKLE 239
L +++ + ++T L+GP GCGKST L++L+ +L P +++ G+V ++G K++
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 240 EFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPD 299
+ + Q + M++ + + + R G+ ++E V K+A + D
Sbjct: 77 VVELRRRVGMVFQK-PNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAAL-WDE- 133
Query: 300 IDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVG 359
VK L +A+ G+SGGQ++RL +
Sbjct: 134 ------------VKDRLHD------------------SAL--GLSGGQQQRLCIARALAV 161
Query: 360 PTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI---SLLQPAPETFDLFDDIIL 416
+ L +DE T+ LD +I IQ+L T +I ++ Q A + D
Sbjct: 162 EPEVLLLDEPTSALDPIATGKIEELIQELK--KKYTIVIVTHNMQQAARIS----DRTAF 215
Query: 417 MAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFL 452
+G++V +GP + + F P+ K D++
Sbjct: 216 FYDGELVEYGPTEQI--------FTNPKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 65/259 (25%), Positives = 106/259 (40%), Gaps = 69/259 (26%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNG---YKLEEFVPP--KT 246
++ ++T L+GP GCGKSTFL+ L+ +L PS+K+ GEV +G YK + V K
Sbjct: 26 IEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKR 85
Query: 247 SAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKA 306
+ Q M++ + V + R G+ +++ V + K A +
Sbjct: 86 VGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAAL------------ 132
Query: 307 ISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFM 366
D D + +A+ G+SGGQ++RL + + L M
Sbjct: 133 --------------------WDEVKDRLKKSAL--GLSGGQQQRLCIARALAVEPEVLLM 170
Query: 367 DEITNGLDS-STA------------YQIIAC---IQQLVHITDSTALISLLQPAPETFDL 410
DE T+ LD ST Y I+ +QQ I+D TA F L
Sbjct: 171 DEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTA-----------FFL 219
Query: 411 FDDIILMAEGKIVYHGPQD 429
+I+ + ++ P+D
Sbjct: 220 NGEIVEFGDTVDLFTNPKD 238
|
Length = 250 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 1e-11
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L+ VS L+PG + +LGP G GKST L+ALSG L P +GEV NG L ++ P +
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAE 73
|
Length = 258 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-11
Identities = 61/209 (29%), Positives = 104/209 (49%), Gaps = 13/209 (6%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ--- 929
K L ++ SL+ G A++G SG+GK+TL ++ G G +++ G Q
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG--IWPPTSGSVRLDGADLKQWDR 387
Query: 930 ETFARVSGYCEQTDIHSPNITVEESVI-FSAWLRLAPEINSKTKAEFVNEVLETIELDAI 988
ETF + GY Q D+ TV E++ F +I K V+E++ + L
Sbjct: 388 ETFGKHIGYLPQ-DVELFPGTVAENIARFGENAD-PEKIIEAAKLAGVHELI--LRLPDG 443
Query: 989 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN 1048
D+++G PG LS QR+R+ +A L +P ++ +DEP + LD + A+K +
Sbjct: 444 YDTVIG-PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA 502
Query: 1049 TGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
G T+V H+PS + D++++L+ G
Sbjct: 503 RGITVVVITHRPS--LLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-11
Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 41/202 (20%)
Query: 190 VSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP---KT 246
VS + PG L+GP G GKST L L G +DP+ G ++ NG L +
Sbjct: 341 VSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQ 397
Query: 247 SAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKA 306
A++ Q+ + T+ E + + + + + E R AG +D ++ A
Sbjct: 398 IAWVPQHP-FLFAGTIAENIRLARP----DASDAEIREALER---AG------LDEFVAA 443
Query: 307 ISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFM 366
+ GL DT +G G+SGGQ +RL + L +
Sbjct: 444 LP----------------QGL----DTPIGEG-GAGLSGGQAQRLALARAFLRDAPLLLL 482
Query: 367 DEITNGLDSSTAYQIIACIQQL 388
DE T LD+ T +++ ++ L
Sbjct: 483 DEPTAHLDAETEAEVLEALRAL 504
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-11
Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 26/219 (11%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQ---ET 931
L ++ +L+ G ++G SG+GK+TL +L G TSG V + G Q E
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR----LDGADLRQWDREQ 407
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSK-----TKAEFVNEVLETIELD 986
R GY Q D+ + T+ E++ R E + + + V+E++ +
Sbjct: 408 LGRHIGYLPQ-DVELFDGTIAENIA-----RFGEEADPEKVIEAARLAGVHELILRLPQG 461
Query: 987 AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046
D+ +G G LS QR+R+ +A L +P ++ +DEP + LD+ A + A+
Sbjct: 462 Y--DTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA 518
Query: 1047 VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
G T+V H+PS + D++++L+ GRI GP
Sbjct: 519 KARGGTVVVIAHRPS--ALASVDKILVLQ-DGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-11
Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 40/218 (18%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFA 933
L+ + + +L+PG AL+G SG+GK+T+ ++AG + SG EI G P+ +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 934 RVSG---YCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKD 990
++ +Q DI TV +++ + W P+ +++ + AI D
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPD----------ADLVRACKDAAIHD 596
Query: 991 SLVGIPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1039
+ PG G E QR+RL IA LV NPSI+ +DE T+ LD I+
Sbjct: 597 VITSRPG--GYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654
Query: 1040 MRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
N+ G T + H+ S I + DE+I+L+ G
Sbjct: 655 DD---NLRRRGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 60/215 (27%), Positives = 90/215 (41%), Gaps = 37/215 (17%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISG-----YPKVQETFA 933
++ + G L+G SG+GKTT M ++ GEI I G V+
Sbjct: 19 NLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIREQDPVE--LR 74
Query: 934 RVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLV 993
R GY Q P++TVEE++ L P++ K + E + L V
Sbjct: 75 RKIGYVIQQIGLFPHMTVEENIA------LVPKLLKWPKEKIRERADELLAL-------V 121
Query: 994 GIPGVN-------GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046
G+ LS Q++R+ +A L A+P ++ MDEP LD + K +
Sbjct: 122 GLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRL 181
Query: 1047 VNT-GRTIVCTIHQPSIDIFEAF---DELILLKTG 1077
G+TIV H DI EAF D + ++K G
Sbjct: 182 QQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-11
Identities = 60/257 (23%), Positives = 106/257 (41%), Gaps = 59/257 (22%)
Query: 859 DTPLEMRERG------FADRKLRL-LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG-- 909
L++ ++G L + + D + + G + +MG+SG+GK+TL+ +L
Sbjct: 19 KRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI 78
Query: 910 RKTSG--YVEGEIKISGYPK-------------VQETFARVSGYCEQTDIHSPNITVEES 954
T G V+G+ I+ V ++FA + P+ TV E+
Sbjct: 79 EPTRGEILVDGK-DIAKLSAAELRELRRKKISMVFQSFALL-----------PHRTVLEN 126
Query: 955 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVE 1014
V F ++ P+ + +A E LE + L+ D N LS ++R+ +A
Sbjct: 127 VAFGLEVQGVPKAEREERAL---EALELVGLEGYADKYP-----NELSGGMQQRVGLARA 178
Query: 1015 LVANPSIIFMDEPTTGLD----ARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAF-- 1068
L +P I+ MDE + LD ++ + +TIV H D+ EA
Sbjct: 179 LANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL---KKTIVFITH----DLDEALRI 231
Query: 1069 -DELILLKTGGRIIYCG 1084
D + ++K G I+ G
Sbjct: 232 GDRIAIMK-DGEIVQVG 247
|
Length = 386 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 21/203 (10%)
Query: 890 TALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETF----ARVSGYCEQTDIH 945
TAL+G +GAGK+TL+ L G G +K+ G E ++V + D
Sbjct: 34 TALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQ 91
Query: 946 SPNITVEESVIFSAW-LRLAP-EINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLST 1003
+ TV + V F + L E+ + V E L+ + + +D LS
Sbjct: 92 VFSSTVWDDVAFGPVNMGLDKDEVERR-----VEEALKAVRMWDFRDK-----PPYHLSY 141
Query: 1004 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSID 1063
Q+KR+ IA L +P +I +DEP LD R +M + + N G+T++ H +D
Sbjct: 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATH--DVD 199
Query: 1064 I-FEAFDELILLKTGGRIIYCGP 1085
+ E D++I+LK G +
Sbjct: 200 LAAEWADQVIVLKEGRVLAEGDK 222
|
Length = 274 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 61/264 (23%), Positives = 105/264 (39%), Gaps = 70/264 (26%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
++ ++ + ++ VS +KPG +T LLGP G GK+T L+ L+G L+P G + +G+
Sbjct: 11 FRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGF 67
Query: 237 KLEE----------FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVS 286
+ + FV T Y +T RE +++ A G +
Sbjct: 68 DVVKEPAEARRRLGFVSDSTGLY--------DRLTARENLEYFAGLYG----------LK 109
Query: 287 RREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGG 346
E A + + + LG++ D VG G S G
Sbjct: 110 GDELTARL------------------------EELADRLGMEELLDRRVG-----GFSTG 140
Query: 347 QKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVH----ITDSTALISLLQ 402
++++ +V L +DE T GLD + I+QL I ST ++
Sbjct: 141 MRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ--- 197
Query: 403 PAPETFDLFDDIILMAEGKIVYHG 426
E L D ++++ G++VY G
Sbjct: 198 ---EVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 50/238 (21%), Positives = 89/238 (37%), Gaps = 52/238 (21%)
Query: 196 PGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE-----FVPPKTS--A 248
+T + G G GKST L+ ++G P G + NG L + +PP+
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIG 78
Query: 249 YISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAIS 308
+ Q + VRE + F + RE
Sbjct: 79 LVFQQYALFPHLNVRENLAFGLK------------RKRNRE------------------- 107
Query: 309 VKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDE 368
+ D +L +LGLD + N +SGG+K+R+ + + L +DE
Sbjct: 108 -----DRISVDELLDLLGLD-----HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDE 157
Query: 369 ITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHG 426
+ LD + Q++ ++Q+ + + + E L D I++M +G++ Y G
Sbjct: 158 PFSALDRALRLQLLPELKQIKKNLNIPVIF-VTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-11
Identities = 51/191 (26%), Positives = 75/191 (39%), Gaps = 25/191 (13%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L +VS L PG L+G G GKST LK L+G L+P +GEV+
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRP--------KGL 66
Query: 246 TSAYISQN-DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
Y+SQ L E TV + V +G G E + E+ D +
Sbjct: 67 RVGYLSQEPPLD-PEKTVLDYV-----IEGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 305 KAISVKGVKRT-LQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKA 363
+ + + L LG D V + +SGG ++R+ ++
Sbjct: 121 ALLEELDGWTLEARAEEALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDL 174
Query: 364 LFMDEITNGLD 374
L +DE TN LD
Sbjct: 175 LLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 60/257 (23%), Positives = 107/257 (41%), Gaps = 52/257 (20%)
Query: 182 AKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVT-GEVSYNGYKLEE 240
IL V+ +K G + ++GP G GKST K ++G+ PS +VT G + + G L E
Sbjct: 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH--PSYEVTSGTILFKGQDLLE 68
Query: 241 FVPPKTSA---YIS-QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVP 296
P + + +++ Q I ++ E + + + R + +
Sbjct: 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFL-------------RSALNARRSARGEEPLD 115
Query: 297 DPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEM 356
D +KA L +LG+D + + ++ G SGG+KKR +M
Sbjct: 116 LLDFLKLLKA--------------KLALLGMD---EEFLNRSVNEGFSGGEKKRNEILQM 158
Query: 357 IVGPTKALFMDEITNGLDSSTAYQIIACIQQL-------VHITDSTALISLLQPAPETFD 409
+ K +DEI +GLD + I +L + IT L++ ++P
Sbjct: 159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP------ 212
Query: 410 LFDDIILMAEGKIVYHG 426
D + ++ +G+IV G
Sbjct: 213 --DYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQE 930
R+L V+ S+ G + A++G SG+GK+TL+ +L G GE+ +G +
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKL 72
Query: 931 TFARVS-------GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 983
+ + G+ Q P+ T E+V + +K +A E+LE +
Sbjct: 73 SSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAY---EMLEKV 129
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV---M 1040
L + + P LS +R+R+ IA LV PS++ DEPT LD A I+ M
Sbjct: 130 GL---EHRINHRPS--ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLM 184
Query: 1041 RAVKNIVNTGRTIV 1054
+ +NT +V
Sbjct: 185 LELNRELNTSFLVV 198
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 3e-11
Identities = 67/215 (31%), Positives = 96/215 (44%), Gaps = 25/215 (11%)
Query: 888 VLTALMGVSGAGKTTLM---DVLAGRKTSGYVEGEIKISG----YPKVQETFARVS-GYC 939
+ ALMG SG GK+TL+ + L VEGE+++ G P V R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 940 EQTDIHSPNITVEESVIFSAWLRLAPEINSKTKA-EFVNEVLETIEL-DAIKDSLVGIPG 997
Q P++T+ ++V ++L + SK + E V L+ L D +KD L P
Sbjct: 91 FQYPNPFPHLTIYDNVAIG--VKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPS 148
Query: 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTI 1057
LS QR+RL IA L P I+ MDEPT +D A + + + TIV
Sbjct: 149 --NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVT 205
Query: 1058 HQPS----IDIFEAFDELILLKTGGRIIYCGPLGK 1088
H P+ + + AF L G++I GP K
Sbjct: 206 HSPAQAARVSDYVAFLYL------GKLIEVGPTRK 234
|
Length = 253 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 4e-11
Identities = 61/266 (22%), Positives = 99/266 (37%), Gaps = 55/266 (20%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
KS + +L V ++ G + ++GP G GKST L+ + G L P +GEV +G
Sbjct: 7 TKSFGGRT-VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGE 62
Query: 237 KLEEFVP------PKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREK 290
+ + + Q+ +TV E V F R
Sbjct: 63 DISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLR------------------- 103
Query: 291 EAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKR 350
E + + +I + L+ L+ +GL D +SGG KKR
Sbjct: 104 EHTRLSEEEIR-----------EIVLEK---LEAVGLRGAEDLYPAE-----LSGGMKKR 144
Query: 351 LTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI---SLLQPAPET 407
+ + + L DE T GLD + I I+ L T+++ L
Sbjct: 145 VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL----DTA 200
Query: 408 FDLFDDIILMAEGKIVYHGPQDHVLA 433
F + D I ++ +GKIV G + + A
Sbjct: 201 FAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 62/242 (25%), Positives = 98/242 (40%), Gaps = 45/242 (18%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKL--EEFVPP 244
+ VS ++ G + LLGP G GK+T +K L+ L P+ +G + G+ + E
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72
Query: 245 KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
+ + Q+ E+T E + AR GV E RRE+
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAE-------RRER-------------- 111
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKAL 364
D +L +GL AD +V SGG ++RL +V + L
Sbjct: 112 -------------IDELLDFVGLLEAADRLVKT-----YSGGMRRRLEIARSLVHRPEVL 153
Query: 365 FMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVY 424
F+DE T GLD T + I++L T L++ E L D + ++ G+I+
Sbjct: 154 FLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT-THYMEEAEQLCDRVAIIDHGRIIA 212
Query: 425 HG 426
G
Sbjct: 213 EG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-11
Identities = 61/260 (23%), Positives = 106/260 (40%), Gaps = 45/260 (17%)
Query: 847 LTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDV 906
L V ++L T ++ + V+ L+ G + ++G SG+GK+ L
Sbjct: 2 LEV--KNLSVSFPTD---------AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKA 50
Query: 907 LAG---RKTSGYVEGEIKISG---YPKVQETFARVSG----YCEQTDIHS--PNITVEES 954
+ G + + V GEI G ++ ++ G Q + S P +T+ +
Sbjct: 51 IMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQ 110
Query: 955 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGV--------NGLSTEQR 1006
+ L +K E +E +EL VGIP + LS R
Sbjct: 111 IAEVLRLHG----KGLSKKEAKERAIELLEL-------VGIPDPERRLKSYPHELSGGMR 159
Query: 1007 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIF 1065
+R+ IA+ L NP ++ DEPTT LD A ++ +K + G ++ H + +
Sbjct: 160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VA 218
Query: 1066 EAFDELILLKTGGRIIYCGP 1085
E D + ++ GRI+ GP
Sbjct: 219 EIADRVAVMY-AGRIVEEGP 237
|
Length = 316 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 4e-11
Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 15/194 (7%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIKISGYPKVQE- 930
+V ++ G + AL+G SG GKTT + D+ G + +G + + + P+V
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 931 TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DAIK 989
R G Q P ++V ++V+ A L+LA + E L L D +K
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDEVK 139
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT 1049
D L P GLS Q++RL IA L P I+ MDEPT+ LD + A + + ++
Sbjct: 140 DRL-KTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKV 197
Query: 1050 GRTIVCT--IHQPS 1061
I+ T +HQ +
Sbjct: 198 TTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 4e-11
Identities = 60/246 (24%), Positives = 101/246 (41%), Gaps = 44/246 (17%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKL-EEFVPP----KT 246
++ G + L+GP GCGK+TFL+A++ +L P +VTG + +G + V P +
Sbjct: 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRR 86
Query: 247 SAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKA 306
+ Q M+V + V + G+ R+ +MEV+ R + D
Sbjct: 87 VGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDH-LMEVAERSLRGAALWDE-------- 137
Query: 307 ISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFM 366
VK L+T G+SGGQ++RL + + L M
Sbjct: 138 -----VKDRLKTPAT--------------------GLSGGQQQRLCIARALAVEPEILLM 172
Query: 367 DEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHG 426
DE T+ LD ++ +I + L + T +I + + + D G +V HG
Sbjct: 173 DEPTSALDPASTARIEDLMTDLKKV---TTIIIVTHNMHQAARVSDTTSFFLVGDLVEHG 229
Query: 427 PQDHVL 432
P D +
Sbjct: 230 PTDQLF 235
|
Length = 252 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 5e-11
Identities = 58/253 (22%), Positives = 100/253 (39%), Gaps = 49/253 (19%)
Query: 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP 244
L VS + PG L+GP G GKST L+ L+G ++P+ +G V +G + +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 245 KT------SAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDP 298
I Q I ++V E V S R + + EK+ +
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENV-LSGRLGRRSTWRSLFGLFPKEEKQRAL---- 126
Query: 299 DIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIV 358
L+ +GL A +SGGQ++R+ ++
Sbjct: 127 ---------------------AALERVGLLDKAYQRADQ-----LSGGQQQRVAIARALM 160
Query: 359 GPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL----FDDI 414
K + DE LD +++ Q++ ++++ T ++SL Q DL D I
Sbjct: 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-----DLAREYADRI 215
Query: 415 ILMAEGKIVYHGP 427
+ + +G+IV+ GP
Sbjct: 216 VGLKDGRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 6e-11
Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP----KVQE 930
+L V +++ G + A+MG +G+GK+TL +AG + G I G + E
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDE 73
Query: 931 TFARVSGYCE-QTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK 989
AR + Q P ++ E +LR A + E ++L+ ++L K
Sbjct: 74 R-ARAGLFLAFQYPEEIPGVSNLE------FLRSALNARRSARGEEPLDLLDFLKLLKAK 126
Query: 990 DSLVGIP------GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA 1042
+L+G+ VN G S ++KR I + P + +DE +GLD A IV
Sbjct: 127 LALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEG 186
Query: 1043 VKNIVNTGRTIVCTIHQPSI 1062
+ + R+ + H +
Sbjct: 187 INRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-11
Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 31/171 (18%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPKVQE 930
L D++ S++ G L+G SG GKTTL+ ++AG R+T+G Y G I+ P +
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRD-ITRLPPQKR 76
Query: 931 TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDAI 988
+ G Q+ PN+TV +++ + R E+ + V E+L+
Sbjct: 77 DY----GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAER-----VAELLD------- 120
Query: 989 KDSLVGIPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
LVG+PG LS Q++R+ +A L +P ++ +DEP + LDAR
Sbjct: 121 ---LVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 7e-11
Identities = 55/180 (30%), Positives = 76/180 (42%), Gaps = 45/180 (25%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGR---KTSGY-VEGEIKISGYPKVQETF 932
L D+ + +TAL+G SG GK+TL+ L R G VEGE+ + G
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVEGEVLLDG-------- 73
Query: 933 ARVSGYCEQTDIHSPNITVEE-----SVIF--------------SAWLRLAPEINSKTKA 973
+I+ P + V E ++F + LRL I K
Sbjct: 74 ---------KNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLH-GIKDKELD 123
Query: 974 EFVNEVLETIEL-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
E V L+ L D +KD L GLS Q++RL IA L P ++ MDEPT+ LD
Sbjct: 124 EIVESSLKKAALWDEVKDRLHKSA--LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 9e-11
Identities = 49/242 (20%), Positives = 96/242 (39%), Gaps = 41/242 (16%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L+ +S ++ G + L+G GCGK+T L+A++G + + +TG ++ L P K
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPHK 78
Query: 246 TS-AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
A + QN + V + V F G+ +++ +++ R +A
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAF-----GLRAQKMPKADIAERVADA------------ 121
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKAL 364
LK++GL + +SGG ++R+ I L
Sbjct: 122 -----------------LKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL 159
Query: 365 FMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVY 424
+DE + LD++ + I L ++ + + L D +M +G++
Sbjct: 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA 219
Query: 425 HG 426
HG
Sbjct: 220 HG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 57/200 (28%), Positives = 96/200 (48%), Gaps = 30/200 (15%)
Query: 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE-GEIKISGYPKV 928
+K +++ DV+ + G + L+G +GAGKTT ++ G R SG + + I+ P
Sbjct: 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH 74
Query: 929 QETFARVS-GYCEQTDIHSPNI----TVEESVIFSAWLRLAPEINSKTKA-----EFVNE 978
+ AR+ GY Q +I TVE++ + EI K E ++
Sbjct: 75 KR--ARLGIGYLPQ----EASIFRKLTVEDN------IMAVLEIREKDLKKAERKEELDA 122
Query: 979 VLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 1038
+LE + ++DS + LS +R+R+ IA L ANP I +DEP G+D A
Sbjct: 123 LLEEFHITHLRDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVID 177
Query: 1039 VMRAVKNIVNTGRTIVCTIH 1058
+ R +K++ + G ++ T H
Sbjct: 178 IQRIIKHLKDRGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 73/280 (26%), Positives = 118/280 (42%), Gaps = 64/280 (22%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS-----LKVTGEVSYNGYKLEE 240
IL +S ++PGR+T LLG G GKST LKAL+G+L +VTG+V+ NG L
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 241 FVPPKTS---AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
P+ + A + Q + FSA RE ++ + AG +
Sbjct: 76 IDAPRLARLRAVLPQ--------AAQPAFAFSA-------REIVLLGRYPHARRAGALTH 120
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMI 357
D + +A+++ G A +VG + +SGG+ R+ ++
Sbjct: 121 RDGEIAWQALALAG-------------------ATALVGRDVTT-LSGGELARVQFARVL 160
Query: 358 ---------VGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETF 408
P + L +DE T LD + ++++ +++L + L + P
Sbjct: 161 AQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP----- 215
Query: 409 DL----FDDIILMAEGKIVYHGPQDHVL--AFFEDC-GFR 441
+L D I ++A+G IV HG VL A C GF
Sbjct: 216 NLAARHADRIAMLADGAIVAHGAPADVLTPAHIARCYGFA 255
|
Length = 272 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 48/217 (22%), Positives = 94/217 (43%), Gaps = 48/217 (22%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFA 933
L D+ + G L A++G G+GK++L+ L G K S G + + G + A
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS----GSVSVPG------SIA 69
Query: 934 RVSGYCEQTDIHSP---NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKD 990
Y Q P N T+ E+++F + E +V++ L+ D
Sbjct: 70 ----YVSQE----PWIQNGTIRENILFGK------PFDE----ERYEKVIKACALE--PD 109
Query: 991 ---------SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR-AAAIVM 1040
+ +G G+N LS Q++R+++A + ++ I +D+P + +DA I
Sbjct: 110 LEILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFE 168
Query: 1041 RAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
+ ++ +T + HQ + + D++++L G
Sbjct: 169 NCILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-10
Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 36/217 (16%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGY------PK-- 927
+L ++ ++PG ++G SG+GK+TL +L T + G++ + G P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIADPAWL 529
Query: 928 -------VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 980
+QE + + +P E VI +A L A + S+ + EV
Sbjct: 530 RRQMGVVLQENVLFSRSIRDNIALCNPGAPFEH-VIHAAKLAGAHDFISELPQGYNTEVG 588
Query: 981 ETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM 1040
E G N LS QR+R+ IA LV NP I+ DE T+ LD + A++M
Sbjct: 589 EK--------------GAN-LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIM 633
Query: 1041 RAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
R ++ I GRT++ H+ + A D +I+L+ G
Sbjct: 634 RNMREICR-GRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 33/189 (17%)
Query: 868 GFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927
+ DR L L +V+ +L PG L+G +GAGK+TL+ +LAG GE+ +
Sbjct: 12 AYGDRPL--LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGE--LEPDSGEVTRPKGLR 67
Query: 928 VQETFARVSGYCEQTDIHSPNITVEESVI--FSAWLRLAPEIN--SKTKAEFVNEVLETI 983
V GY Q P TV + VI F L E+ A+ +E+L +
Sbjct: 68 V--------GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAEL 119
Query: 984 -----ELDA------IKDSL--VGIPG----VNGLSTEQRKRLTIAVELVANPSIIFMDE 1026
ELD +++L +G P V+ LS R+R+ +A L+ P ++ +DE
Sbjct: 120 EALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDE 179
Query: 1027 PTTGLDARA 1035
PT LD +
Sbjct: 180 PTNHLDLES 188
|
Length = 530 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-10
Identities = 62/257 (24%), Positives = 109/257 (42%), Gaps = 29/257 (11%)
Query: 842 LPFEPLTVAFQDLKYYVD-TPLEMRERGFA--DRKLRLLYDVTGSLRPGVLTALMGVSGA 898
+ + V F D + LE+R F ++ + L + +L G A++G SG+
Sbjct: 316 ILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGS 375
Query: 899 GKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFS 958
GK+TL+ +LAG +G I ++G ++ EQ + ++ + +FS
Sbjct: 376 GKSTLLQLLAG--AWDPQQGSITLNGVE--------IASLDEQALRETISVLTQRVHLFS 425
Query: 959 AWLR----LAPEINSKTKAEFVNEVLETIEL-DAIKDSLVGIP-----GVNGLSTEQRKR 1008
LR LA N E + L+ + L ++ + G+ G LS +R+R
Sbjct: 426 GTLRDNLRLA---NPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRR 482
Query: 1009 LTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAF 1068
L +A L+ + + +DEPT GLD V+ + G+T++ H+ E
Sbjct: 483 LALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERM 539
Query: 1069 DELILLKTGGRIIYCGP 1085
D +I+L G I
Sbjct: 540 DRIIVLDNGKIIEEGTH 556
|
Length = 573 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 57/254 (22%), Positives = 100/254 (39%), Gaps = 55/254 (21%)
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG---YK 237
+ L + + L G +LG G GKST L+ L+G DP G ++ NG
Sbjct: 348 GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIAS 404
Query: 238 LEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
L+E +T + ++Q +H+ T+R+ + + + + E+ ++ G+
Sbjct: 405 LDEQALRETISVLTQ-RVHLFSGTLRDNLRL-------ANPDASDEELWAALQQVGL--- 453
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMI 357
+ +T +G RR +SGG+++RL +
Sbjct: 454 --------------------EKL---LESAPDGLNTWLGEGGRR-LSGGERRRLALARAL 489
Query: 358 VGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL-----FD 412
+ +DE T GLD T Q++A + + H T L+ T L D
Sbjct: 490 LHDAPLWLLDEPTEGLDPITERQVLALLFE--HAEGKTLLMV-------THRLRGLERMD 540
Query: 413 DIILMAEGKIVYHG 426
II++ GKI+ G
Sbjct: 541 RIIVLDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-10
Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 48/199 (24%)
Query: 197 GRMTLLLGPPGCGKSTFLKALSGNLDP-SLKVT---GEVSYNGYKLEEFVPPKTSAYISQ 252
G + LLG G GKST L L+G L P S V + Y+ L E + + Q
Sbjct: 18 GEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER--RQRVGLVFQ 75
Query: 253 N-DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKG 311
+ D + V + V F +G E EV RR +EA + A+ G
Sbjct: 76 DPDDQLFAADVDQDVAFGPL--NLGLSEA---EVERRVREA-----------LTAVGASG 119
Query: 312 V-KRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEIT 370
+ +R +SGG+KKR+ + L +DE T
Sbjct: 120 LRERPTHC------------------------LSGGEKKRVAIAGAVAMRPDVLLLDEPT 155
Query: 371 NGLDSSTAYQIIACIQQLV 389
GLD + Q++A +++L
Sbjct: 156 AGLDPAGREQMLAILRRLR 174
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 60/269 (22%), Positives = 98/269 (36%), Gaps = 70/269 (26%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
+ + + L+ VS +K G L+G G GKST +A+ G L P +G + ++G
Sbjct: 11 FPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP---TSGSIIFDGK 67
Query: 237 KLEEFVPP------KTSAYISQN---DLHIAEMTVRETVDFSARCQGVGSREETMMEVSR 287
L + K + Q+ L+ MT+ E + R G S++E E
Sbjct: 68 DLLKLSRRLRKIRRKEIQMVFQDPMSSLN-PRMTIGEQIAEPLRIHGKLSKKEARKEA-V 125
Query: 288 REKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQ 347
G+ + V N +SGGQ
Sbjct: 126 LLLLVGVGLPEE-----------------------------------VLNRYPHELSGGQ 150
Query: 348 KKRLTTGEMI-----VGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTAL----- 397
++R+ I + P K L DE T+ LD S QI+ +++L T L
Sbjct: 151 RQRV----AIARALALNP-KLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205
Query: 398 ISLLQPAPETFDLFDDIILMAEGKIVYHG 426
+ ++ + D + +M GKIV G
Sbjct: 206 LGVVA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 49/191 (25%), Positives = 77/191 (40%), Gaps = 41/191 (21%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFAR 934
+L V +++ G + ALMG +G+GK+TL + G EGEI G
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---------- 63
Query: 935 VSGYCEQTDIHSPNITVEESV---IFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDS 991
DI ++ EE IF A+ PEI A+F+ V E
Sbjct: 64 -------EDI--TDLPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE---------- 103
Query: 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGR 1051
G S ++KR I L+ P + +DEP +GLD A +V + + G+
Sbjct: 104 --------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155
Query: 1052 TIVCTIHQPSI 1062
+++ H +
Sbjct: 156 SVLIITHYQRL 166
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 3e-10
Identities = 58/203 (28%), Positives = 101/203 (49%), Gaps = 25/203 (12%)
Query: 891 ALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFARVSGYC----EQTD- 943
A++G +GAGK+TL G + TSG + I G P +E V + + D
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPTSG----SVLIRGEPITKENIREVRKFVGLVFQNPDD 89
Query: 944 -IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLS 1002
I SP TVE+ + F + L ++ +T A V+ L + L+ ++D +P + LS
Sbjct: 90 QIFSP--TVEQDIAFGP-INLG--LDEETVAHRVSSALHMLGLEELRDR---VP--HHLS 139
Query: 1003 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPS 1061
++KR+ IA + P ++ +DEPT GLD + ++ + ++ T G T++ + HQ
Sbjct: 140 GGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ-- 197
Query: 1062 IDIFEAFDELILLKTGGRIIYCG 1084
+D+ + I + GRI+ G
Sbjct: 198 LDLVPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 11/159 (6%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFARV 935
L V+ ++ G L+G SG GKTTL+ ++AG +T GEI + G R
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLPPHKRP 73
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
Q P++TV E++ F LRL ++ K V E L+ ++L+ +
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFG--LRLKKLPKAEIKER-VAEALDLVQLEGYANRKP-- 128
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
+ LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 129 ---SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFA-- 933
+L++V+ S+ G + A++G SG+GK+TL+ +L G T G++ +G P + + A
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 934 -----RVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI 988
+ G+ Q P+ T E+V + ++A E+L + L+
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRAL---EMLAAVGLEHR 138
Query: 989 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036
+ + LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 139 ANHRP-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 5e-10
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 892 LMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFARVSGYCEQTDIHSPNIT 950
L+G SG GKTTL+ +LAG + G I + G R Q+ P++T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD--SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMT 58
Query: 951 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLT 1010
VEE+V F L++ ++ K V E L ++L+ D + LS Q++R+
Sbjct: 59 VEENVAFG--LKMRKVPRAEIKPR-VLEALRLVQLEEFADR-----KPHQLSGGQQQRVA 110
Query: 1011 IAVELVANPSIIFMDEPTTGLDAR 1034
+A LV P I+ +DEP + LD +
Sbjct: 111 LARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 5e-10
Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 37/218 (16%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVS 936
L D+ +L G L ++G SG GKTTL++++AG Y G I + G P R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 937 GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIP 996
G Q + P V+++V F L ++ A ++L VG+
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAH---QML----------KKVGLE 119
Query: 997 GVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA----RAAAIVMRAVKNIV 1047
G LS QR+R+ IA L ANP ++ +DEP LDA + ++++ +
Sbjct: 120 GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ--- 176
Query: 1048 NTGRTIVCTIHQPSIDIFEAF---DELILLKTG-GRII 1081
TG+ ++ H DI EA EL+LL G GR++
Sbjct: 177 ETGKQVLLITH----DIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 6e-10
Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 73/225 (32%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKLEEFVP 243
L ++ + ++T L+GP GCGKST L+ L+ +L P +V GEV +G
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKN------ 75
Query: 244 PKTSAYISQNDLHIAE----------------MTVRETVDFSARCQGVGSREETMME-VS 286
I + + E M++ + V + R G+ +E + E V
Sbjct: 76 ------IYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKE--LDEIVE 127
Query: 287 RREKEAGI---VPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343
K+A + V D + +A G+
Sbjct: 128 SSLKKAALWDEVKD-RLHK----------------------------------SA--LGL 150
Query: 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQL 388
SGGQ++RL + + L MDE T+ LD + +I I +L
Sbjct: 151 SGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL 195
|
Length = 253 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 6e-10
Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 26/227 (11%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT-SGYVEGEIKISGYPKVQETFA 933
+ L+ V ++ G + AL+G SG+GK+TL+ L+G T I++ G +E
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--G 75
Query: 934 RVSGYCEQTDIHSPNI----------TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 983
R++ ++ ++ I +V E+V+ A L +T + +
Sbjct: 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA---LGSTPFWRTCFSWFTREQKQR 132
Query: 984 ELDAIKDSLVGIPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 1038
L A+ + VG+ V+ LS Q++R+ IA L+ +I DEP LD +A I
Sbjct: 133 ALQAL--TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARI 190
Query: 1039 VMRAVKNI-VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
VM +++I N G T+V T+HQ +D + E I+ G + Y G
Sbjct: 191 VMDTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 6e-10
Identities = 59/274 (21%), Positives = 102/274 (37%), Gaps = 68/274 (24%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
Y + + LN+VS ++ G ++G G GKST + L+G PS +G + +G
Sbjct: 13 YGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGK 69
Query: 237 KLEEFVPPKTSAYISQ-------NDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRRE 289
L K Q + L+ TV + R G+ ++ + E
Sbjct: 70 PLAPKKRAKAFYRPVQMVFQDPYSSLN-PRRTVGRILSEPLRPHGLSKSQQRIAE----- 123
Query: 290 KEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI---SGG 346
+L +GL + + R SGG
Sbjct: 124 -------------------------------LLDQVGLPP-------SFLDRRPHELSGG 145
Query: 347 QKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTAL-----ISLL 401
Q++R+ ++ K L +DE T+ LD S QI+ + +L T L ++L+
Sbjct: 146 QRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV 205
Query: 402 QPAPETFDLFDDIILMAEGKIVYHGPQDHVLAFF 435
+ + D I +M G+IV GP + +L+
Sbjct: 206 E------HMCDRIAVMDNGQIVEIGPTEELLSHP 233
|
Length = 252 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 6e-10
Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 33/206 (16%)
Query: 887 GVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPKVQ--ETFARVSGYCE 940
G + +MG+SG+GK+T + +L T+G +++GE I V+ E + G
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGE-NIMKQSPVELREVRRKKIGMVF 77
Query: 941 QTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGV-- 998
Q P++T+ ++ L PE K KA L+ +K LVG+
Sbjct: 78 QQFALFPHMTILQNTSLGPELLGWPEQERKEKA-----------LELLK--LVGLEEYEH 124
Query: 999 ---NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIV 1054
+ LS ++R+ +A L A P I+ MDE + LD + +K + T +TIV
Sbjct: 125 RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIV 184
Query: 1055 CTIHQPSIDIFEAF---DELILLKTG 1077
H D+ EA D ++++K G
Sbjct: 185 FITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 7e-10
Identities = 62/274 (22%), Positives = 106/274 (38%), Gaps = 70/274 (25%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
KS ++ IL+ V + G + +LG G GKST L+ + G L P GE+ +G
Sbjct: 15 TKSFGDRV-ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGE 70
Query: 237 KLEEFVPPKTSAYISQNDLHIAE---------------MTVRETVDFSARCQGVGSREET 281
+ + +S+ +L+ +TV E V F R
Sbjct: 71 DIPQ---------LSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR---------- 111
Query: 282 MMEVSRREKEAGIVPDPDIDT--YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAM 339
E +P+ I MK L+++GL +
Sbjct: 112 ---------EHTKLPESLIRELVLMK----------------LELVGLR----GAAADLY 142
Query: 340 RRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALIS 399
+SGG +KR+ I + LF+DE T+GLD +A I I++L T ++
Sbjct: 143 PSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIM- 201
Query: 400 LLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLA 433
+ + D + ++A+GK++ G + +LA
Sbjct: 202 VTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 7e-10
Identities = 65/250 (26%), Positives = 112/250 (44%), Gaps = 47/250 (18%)
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE 240
+I L++VS ++ G ++G G GKST LK L+G P+ +G V +G + +
Sbjct: 14 NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQ 70
Query: 241 FVPPKTSA---YISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
P Y+ Q D+ + T+R+ + A + D
Sbjct: 71 LDPADLRRNIGYVPQ-DVTLFYGTLRDNITLGA----------------------PLADD 107
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKI-LGLDVCADTMVGNAMRRGISGGQKKRLTTGEM 356
I ++A + GV TD++ K GLD +G RG+SGGQ++ +
Sbjct: 108 ERI---LRAAELAGV-----TDFVNKHPNGLD----LQIGER-GRGLSGGQRQAVALARA 154
Query: 357 IVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416
++ L +DE T+ +D ++ ++ ++QL + D T +I +P+ DL D II+
Sbjct: 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQL--LGDKTLIIITHRPS--LLDLVDRIIV 210
Query: 417 MAEGKIVYHG 426
M G+IV G
Sbjct: 211 MDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 8e-10
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 18/133 (13%)
Query: 901 TTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVS----GYCEQTDIHSPNITVEESVI 956
+TL+ ++ G G I + G + ++ G Q P +TV E++
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 957 FSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELV 1016
F K E LE + L D V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 1017 ANPSIIFMDEPTT 1029
P ++ +DEPT
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 8e-10
Identities = 66/269 (24%), Positives = 108/269 (40%), Gaps = 43/269 (15%)
Query: 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEI-------KISGYP 926
+L +++ ++ G + ++G SGAGK+ LM VL G G I + GY
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYV 72
Query: 927 KVQETFARVSGYCEQT------------DIHSPNITVEESVIFSAWLRLAPEINSKTKAE 974
+ C T D I +++ L + T +
Sbjct: 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGD---DTVLD 129
Query: 975 FVNEVLETIEL---DAIKDSLVGIPGVN----------GLSTEQRKRLTIAVELVANPSI 1021
V E LE I +A+ ++ I V LS +++R+ +A +L P +
Sbjct: 130 NVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFL 189
Query: 1022 IFMDEPTTGLDARAAAIVMRAVKNIV-NTGRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080
DEPT LD + A +V A++ V +G ++V T H P + I + D+ I L+ G I
Sbjct: 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLEN-GEI 247
Query: 1081 IYCGPLGKHSSQVIEYF-EGISGVPKIRN 1108
G +V+ F EG+S V K
Sbjct: 248 KEEG----TPDEVVAVFMEGVSEVEKECE 272
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 9e-10
Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 22/174 (12%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYV--EGEIKISGYPK 927
L ++ + +TAL+G SG GK+TL+ D++ G + G V +G+
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 928 VQETFARVSGYCEQTDIHSPN---ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 984
V E RV G Q PN +++ +++ + RL + K E V E L+
Sbjct: 77 VVELRRRV-GMVFQK----PNPFPMSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAA 129
Query: 985 L-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 1037
L D +KD L GLS Q++RL IA L P ++ +DEPT+ LD A
Sbjct: 130 LWDEVKDRLHDSA--LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 9e-10
Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 44/232 (18%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVE---GEIKISGYPKVQ-- 929
LL DV+ +LRPG + A++G +GAGK+TL+ L SG + GE++++G P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL-----SGELSPDSGEVRLNGRPLADWS 70
Query: 930 -ETFARVSGYCEQTDIHSPNI----TVEESVIFSAWLRLAPEINSKTKA-EFVNEVLETI 983
AR Q ++ TVEE V + AP S+ + V L +
Sbjct: 71 PAELARRRAVLPQ----HSSLSFPFTVEEVV----AMGRAPHGLSRAEDDALVAAALAQV 122
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELV------ANPSIIFMDEPTTGLDARAAA 1037
+L + LS +++R+ +A L P + +DEPT+ LD
Sbjct: 123 DLAHLAGRD-----YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH 177
Query: 1038 IVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAF---DELILLKTGGRIIYCGP 1085
V+R + + + G ++ +H D+ A D ++LL GR++ G
Sbjct: 178 HVLRLARQLAHERGLAVIVVLH----DLNLAARYADRIVLLH-QGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 9e-10
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 17/172 (9%)
Query: 868 GFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927
G + +L +L V ++ G AL+G SG+GK+TL+ +LAG GE+ + G P
Sbjct: 17 GQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQPL 74
Query: 928 VQ-------ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 980
Q + A+ G+ Q+ + P + E+V A LR S+ A+ +L
Sbjct: 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK---ALL 131
Query: 981 ETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
E + L L +P LS +++R+ +A P ++F DEPT LD
Sbjct: 132 EQLGLG---KRLDHLPA--QLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 64/253 (25%), Positives = 102/253 (40%), Gaps = 49/253 (19%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNL----DPSLKVTGEVS 232
Y + +L ++ + PG + +L GP G GK+T L L G L + SLKV G+
Sbjct: 11 YGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLL-TLIGGLRSVQEGSLKVLGQEL 69
Query: 233 YNGYKLEEFVPPKTSAYISQ--NDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREK 290
Y + E + YI Q N L +T R+ V + Q S +E RE+
Sbjct: 70 YGASEKELVQLRRNIGYIFQAHNLLGF--LTARQNVQMALELQPNLSYQE------ARER 121
Query: 291 EAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKR 350
+ L+ +GL D + + +SGGQK+R
Sbjct: 122 ARAM---------------------------LEAVGLG---DHL--DYYPHNLSGGQKQR 149
Query: 351 LTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL 410
+ +V K + DE T LDS + ++ +Q+L T LI + D+
Sbjct: 150 VAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILI--VTHDNRILDV 207
Query: 411 FDDIILMAEGKIV 423
D I+ M +GK++
Sbjct: 208 ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 57/250 (22%), Positives = 99/250 (39%), Gaps = 50/250 (20%)
Query: 176 GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG 235
GY + +AKI LN++S ++ G + GP GCGKST LK ++ +L +G + + G
Sbjct: 10 GYLAGDAKI--LNNISLSVRAGEFIAITGPSGCGKSTLLKIVA-SLISP--TSGTLLFEG 64
Query: 236 YKLEEFVPP---KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEA 292
+ P + +Y +Q + TV + + F + + +RR
Sbjct: 65 EDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIR------------NRR---- 107
Query: 293 GIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLT 352
PD ++ + R D IL + +SGG+K+R+
Sbjct: 108 ---PDRA-------AALDLLARFALPDSIL---------TKNITE-----LSGGEKQRIA 143
Query: 353 TGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFD 412
+ K L +DEIT+ LD S I I + V + A++ + + D
Sbjct: 144 LIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQN-VAVLWITHDKDQAIRHAD 202
Query: 413 DIILMAEGKI 422
+I + G
Sbjct: 203 KVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 1e-09
Identities = 64/283 (22%), Positives = 108/283 (38%), Gaps = 78/283 (27%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD--PSLKVTGEVSYN 234
+ + + ++ VS LK G + ++G G GKS KA+ G L + V GE+ ++
Sbjct: 11 FPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFD 70
Query: 235 G---YKLEEFVPPK----TSAYISQNDLH----IAEMTVRETVDFSARCQGVGSREETMM 283
G L E K A I Q+ + + MT+ + + E +
Sbjct: 71 GKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPV--MTIGDQI------------AEVLR 116
Query: 284 E--VSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341
+KEA +AI +L+++G+ + RR
Sbjct: 117 LHGKGLSKKEA----------KERAIE------------LLELVGIP--------DPERR 146
Query: 342 G------ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDST 395
+SGG ++R+ + K L DE T LD + QI+ +++L T
Sbjct: 147 LKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKG-T 205
Query: 396 ALISLLQPAPETFDL------FDDIILMAEGKIVYHGPQDHVL 432
ALI + T DL D + +M G+IV GP + +
Sbjct: 206 ALILI------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242
|
Length = 316 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 1e-09
Identities = 61/249 (24%), Positives = 94/249 (37%), Gaps = 77/249 (30%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
L ++ + G + ++GP G GKS+ L AL G L+ K++G VS G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG---------- 66
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
+ AY+SQ I T+RE + F D + Y K
Sbjct: 67 SIAYVSQEPW-IQNGTIRENILFGKPF--------------------------DEERYEK 99
Query: 306 AISVKGVKRTLQTDYILKIL-GLDVCADTMVGNAMRRGI--SGGQKKRLTTGEMIVGPTK 362
I L+ D L+IL D T +G +GI SGGQK+R++ +
Sbjct: 100 VIKACA----LEPD--LEILPDGD---LTEIGE---KGINLSGGQKQRISLARAVYSDAD 147
Query: 363 ALFMDEITNGLDSSTAYQIIA-CIQQ---------LVHITDSTALISLLQPAPETFDLFD 412
+D+ + +D+ I CI LV T + LL A D
Sbjct: 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILV-----THQLQLLPHA-------D 195
Query: 413 DIILMAEGK 421
I+++ G+
Sbjct: 196 QIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 35/176 (19%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQE 930
L +V+ + G ++G SG+GK+TL +LAG + +SG I + G P +
Sbjct: 19 AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG----SILLDGKPLAPK 74
Query: 931 TFARVSGYCE----QTDIHS---PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 983
A+ Y D +S P TV + ++ + E +
Sbjct: 75 KRAKAF-YRPVQMVFQDPYSSLNPRRTVGRI-LSEPL-------RPHGLSKSQQRIAELL 125
Query: 984 ELDAIKDSLVGIPGV------NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 1033
+ VG+P + LS QR+R+ IA L+ P ++ +DEPT+ LD
Sbjct: 126 DQ-------VGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 27/152 (17%)
Query: 892 LMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPK---VQETFARVSGYCEQTDI 944
L+G SG GKTT + ++AG TSG Y+ G PK + F + Y
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALY------ 84
Query: 945 HSPNITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLS 1002
P++TV +++ F LR P EI+ + V EV E ++++ + D LS
Sbjct: 85 --PHMTVYDNIAFGLKLRKVPKDEIDER-----VREVAELLQIEHLLDRKP-----KQLS 132
Query: 1003 TEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
QR+R+ + +V P + MDEP + LDA+
Sbjct: 133 GGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-09
Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 55/256 (21%)
Query: 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP 244
N L+ VS + GR+ LGP G GKST +K ++G L P +G V G + + P
Sbjct: 16 NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQ-NPK 71
Query: 245 KTSAYI----SQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI 300
+ I N L++ +M VRE + F A G
Sbjct: 72 EVQRNIGYLPEHNPLYL-DMYVREYLQFIAGIYG-------------------------- 104
Query: 301 DTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGP 360
+KG + + +++++GL +G +S G ++R+ + ++
Sbjct: 105 --------MKGQLLKQRVEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHD 151
Query: 361 TKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALIS--LLQPAPETFDLFDDIILMA 418
K L +DE T GLD + +I I+ + D T ++S ++Q E + D +I++
Sbjct: 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIG--KDKTIILSTHIMQ---EVEAICDRVIIIN 206
Query: 419 EGKIVYHGPQDHVLAF 434
+GKIV D + A
Sbjct: 207 KGKIVADKKLDELSAA 222
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 61/285 (21%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD--PSLKVTGEVSYN 234
Y + EA L+ +S + +T L+GP GCGKSTFL+ L+ D ++K+TGE+ +
Sbjct: 14 YGNYEA----LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFE 69
Query: 235 GYKLEEFVPPKTSAYISQNDLHIA-------EMTVRETVDFSARCQGVGSREETMMEVSR 287
G + K + ++ + +V + V + + GV +E V
Sbjct: 70 G---QNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEE 126
Query: 288 REKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQ 347
K+A I K T D + NA + SGGQ
Sbjct: 127 SLKQAAI-----------------WKET---------------KDNLDRNA--QAFSGGQ 152
Query: 348 KKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPET 407
++R+ + K + +DE T+ LD ++ +I + +L H + LQ A
Sbjct: 153 QQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR- 211
Query: 408 FDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFL 452
+ D + G ++ GP + + F P+++ SD+L
Sbjct: 212 --ISDQTAFLMNGDLIEAGPTEEM--------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 67/215 (31%), Positives = 113/215 (52%), Gaps = 27/215 (12%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L DV+ +L PG +TAL+G SG+GK+T++ +L G++ + G P +
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALL--ENFYQPQGGQVLLDGKP--------I 78
Query: 936 SGYCEQTDIHSPNITV-EESVIFSAWLR--LAPEINSKTKAEFVNEVLETI-------EL 985
S Y E +HS V +E V+F+ L+ +A + S + E V E + EL
Sbjct: 79 SQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCS-FECVKEAAQKAHAHSFISEL 136
Query: 986 DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045
+ D+ VG G + LS Q++R+ IA L+ NP ++ +DE T+ LDA + V +A+ +
Sbjct: 137 ASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD 195
Query: 1046 IVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080
RT++ H+ + E D++++L GGRI
Sbjct: 196 -WPERRTVLVIAHR--LSTVERADQILVLD-GGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-09
Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 47/229 (20%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY--VEGEIKISGYPKVQ---ET 931
L +V+ ++RPG A++G G+GK+TL+ +L G Y EG + + G Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL----YQPTEGSVLLDGVDIRQIDPAD 536
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFSAWLR-----LAPEINSKTKAEFVNEVLETIEL- 985
R GY Q + +F LR AP + + E+L EL
Sbjct: 537 LRRNIGYVPQ-----------DPRLFYGTLRDNIALGAPYADDE-------EILRAAELA 578
Query: 986 ---DAIK------DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036
+ ++ D +G G LS QR+ + +A L+ +P I+ +DEPT+ +D R+
Sbjct: 579 GVTEFVRRHPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSE 637
Query: 1037 AIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
+K + G+T+V H+ S + + D +I++ GRI+ GP
Sbjct: 638 ERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVM-DNGRIVADGP 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP- 244
L++VS LK G + L+GP G GKST L+A++G L P+ +GE+ +G + +
Sbjct: 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEE 70
Query: 245 --KTSAYISQ 252
+ Y+ Q
Sbjct: 71 LRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 55/255 (21%), Positives = 98/255 (38%), Gaps = 55/255 (21%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
L V+ + G M ++GP G GKST L++L+G +DP+ +GE+ +NG + K
Sbjct: 19 ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNG---VQITKLK 72
Query: 246 TSA---------YISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVP 296
I Q + ++V E V + +
Sbjct: 73 GKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGR--------------LGYTSTWRSLFG 118
Query: 297 DPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEM 356
+ +A+ L+ +G+ A +SGGQ++R+
Sbjct: 119 LFSKEDKAQAL------------DALERVGILDKAYQRAST-----LSGGQQQRVAIARA 161
Query: 357 IVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL----FD 412
+V K + DE LD +A +++ ++ + T +++L Q DL D
Sbjct: 162 LVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-----VDLAKKYAD 216
Query: 413 DIILMAEGKIVYHGP 427
II + G+IV+ GP
Sbjct: 217 RIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 22/174 (12%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIKISGYPKVQ 929
LYD+T S+ +TAL+G SG GK+TL+ D++ G + + G+I +G +
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR----ITGDILYNGEN-IM 76
Query: 930 ETFARVSGYCEQTDI--HSPN---ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 984
++ A V + + PN ++ E+V + R+ E N KT V + L+
Sbjct: 77 DSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGP--RIHGEKNKKTLDTIVEKSLKGAA 134
Query: 985 L-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 1037
L D +KD L LS Q++RL IA L NP +I MDEP + LD A A
Sbjct: 135 LWDEVKDRLH--DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 61/224 (27%), Positives = 100/224 (44%), Gaps = 25/224 (11%)
Query: 873 KLRLLYDVTG-----SLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927
+R Y ++ G + A++G SGAGK+TL++++AG +T GEI I+G
Sbjct: 6 DVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDH 63
Query: 928 VQETFAR--VSGYCEQTDIHSPNITVEESVIF--SAWLRLAPEINSKTKAEFVNEVLETI 983
A VS ++ ++ + ++TV +++ S L+L E + E V +
Sbjct: 64 TASPPAERPVSMLFQENNLFA-HLTVAQNIGLGLSPGLKLNAE-----QREKVEAAAAQV 117
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
L L PG LS QR+R+ +A LV I+ +DEP + LD A ++ V
Sbjct: 118 GLAGFLKRL---PGE--LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALV 172
Query: 1044 KNI-VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086
+ T++ H P D D ++ L GRI G
Sbjct: 173 SQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-09
Identities = 54/259 (20%), Positives = 107/259 (41%), Gaps = 56/259 (21%)
Query: 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP 243
L+ +S +++PG L+G G GKST + + +P +G++ +G+ L ++
Sbjct: 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTL 401
Query: 244 PKTSAYISQ--NDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDID 301
++ D+ + T+ + + + R E
Sbjct: 402 ASLRRQVALVSQDVVLFNDTIANNIAYGR-----------TEQADRAE------------ 438
Query: 302 TYMKAISVKGVKRTLQTDYILKIL-GLDVCADTMVG-NAMRRGISGGQKKRLTTGEMIVG 359
++R L Y + L + DT +G N + +SGGQ++RL ++
Sbjct: 439 ----------IERALAAAYAQDFVDKLPLGLDTPIGENGVL--LSGGQRQRLAIARALLK 486
Query: 360 PTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPETFDLFDDI 414
L +DE T+ LD+ + + A +++L+ T L+ S ++ A D I
Sbjct: 487 DAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTIEKA-------DRI 537
Query: 415 ILMAEGKIVYHGPQDHVLA 433
++M +G+IV G + +LA
Sbjct: 538 VVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 52/232 (22%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPK----- 927
+ DV+ +R G + +MG+SG+GK+TL+ + TSG ++G+ I+ +
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQ-DIAAMSRKELRE 98
Query: 928 --------VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEV 979
V ++FA + P+ TV E+V F ++ P + +A E
Sbjct: 99 LRRKKISMVFQSFALL-----------PHRTVLENVAFGLEVQGVPRAEREERAA---EA 144
Query: 980 LETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD----ARA 1035
LE + L+ + + LS ++R+ +A L +P I+ MDE + LD
Sbjct: 145 LELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREM 199
Query: 1036 AAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAF---DELILLKTGGRIIYCG 1084
++R + +TIV H D+ EA D + ++K GR++ G
Sbjct: 200 QDELLRLQAEL---QKTIVFITH----DLDEALRLGDRIAIMK-DGRLVQVG 243
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 27/216 (12%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIKISGYP-- 926
+L DV+ ++ G A++G SG+GK+T++ DV +G I I G
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILIDGQDIR 66
Query: 927 KV-QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 985
+V ++ R G Q D N T+ ++ + E+ KA +++ +
Sbjct: 67 EVTLDSLRRAIGVVPQ-DTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFP- 124
Query: 986 DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045
D D++VG G+ LS +++R+ IA ++ NP I+ +DE T+ LD + A+
Sbjct: 125 DGY-DTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAAL-R 181
Query: 1046 IVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081
V+ GRT + H+ S I A D++I+LK GRI+
Sbjct: 182 DVSKGRTTIVIAHRLS-TIVNA-DKIIVLKD-GRIV 214
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 25/218 (11%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP---------K 927
L + +++ G +TA++G +GAGK+TL L G G I G P K
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPIDYSRKGLMK 79
Query: 928 VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA 987
++E+ V + D + +V + V F A PE + V+ L+ ++
Sbjct: 80 LRESVGMVF---QDPDNQLFSASVYQDVSFGAVNLKLPE---DEVRKRVDNALKRTGIEH 133
Query: 988 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047
+KD + LS Q+KR+ IA LV P ++ +DEPT GLD + +M+ + +
Sbjct: 134 LKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQ 188
Query: 1048 N-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
G TI+ H IDI + + + + GR+I G
Sbjct: 189 KELGLTIIIATH--DIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 46/229 (20%), Positives = 86/229 (37%), Gaps = 49/229 (21%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
K+ L+ ++ + G L+GP G GKST LK + P+ +G + NG
Sbjct: 7 TKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQ 63
Query: 237 KLEEFVPPKTSAY------ISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREK 290
+ + + Q+ + + V E V F+ GV R E+ +R
Sbjct: 64 DVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVP 118
Query: 291 EAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKR 350
A L+++GL + +SGG+++R
Sbjct: 119 AA-----------------------------LELVGLSHKHRALPA-----ELSGGEQQR 144
Query: 351 LTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALIS 399
+ IV L DE T LD T ++I+ +++ ++ +T +++
Sbjct: 145 VAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 43/250 (17%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
IL+++S +KPG + ++G G GKST K + +VP
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQR--------------------FYVPEN 56
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQ-GVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
+ +DL +A+ R Q GV +E + S R+ A P ++ +
Sbjct: 57 GRVLVDGHDLALADPA-------WLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVI 109
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKAL 364
+A + G D+I + L DT+VG G+SGGQ++R+ ++ + L
Sbjct: 110 EAAKLAGAH-----DFISE---LPEGYDTIVGE-QGAGLSGGQRQRIAIARALIHNPRIL 160
Query: 365 FMDEITNGLDSSTAYQIIACIQQLVH-ITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423
DE T+ LD Y+ I + +H I +I ++ T D II+M +G+IV
Sbjct: 161 IFDEATSALD----YESEHAIMRNMHDICAGRTVI-IIAHRLSTVKNADRIIVMEKGRIV 215
Query: 424 YHGPQDHVLA 433
G D +LA
Sbjct: 216 EQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-09
Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 45/247 (18%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE-- 240
K +L +S ++PG ++GP G GKST +K L DP+ +GE+ +G + +
Sbjct: 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDIS 397
Query: 241 -FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPD 299
K +SQ D + T+RE + G + T E+ K A
Sbjct: 398 LDSLRKRIGIVSQ-DPLLFSGTIRENIAL-------GRPDATDEEIEEALKLANA----- 444
Query: 300 IDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVG 359
++I L DT+VG +SGGQ++RL ++
Sbjct: 445 ------------------HEFIAN---LPDGYDTIVGE-RGVNLSGGQRQRLAIARALLR 482
Query: 360 PTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419
L +DE T+ LD+ T I +++L+ T LI + + T D II++
Sbjct: 483 NPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLS--TIKNADRIIVLDN 538
Query: 420 GKIVYHG 426
G+IV G
Sbjct: 539 GRIVERG 545
|
Length = 567 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-09
Identities = 63/263 (23%), Positives = 110/263 (41%), Gaps = 59/263 (22%)
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE 240
+ L++VS ++PG ++G G GKST LK L G P+ G V +G + +
Sbjct: 475 GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQ 531
Query: 241 FVPPKTSA---YISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
P Y+ Q D + T+R+ + A + +E ++ + AG+
Sbjct: 532 IDPADLRRNIGYVPQ-DPRLFYGTLRDNIALGAP----YADDEEILRAAEL---AGV--- 580
Query: 298 PDIDTYMKAISVKGVKRTLQTDYI-LKILGLDVCADTMVGNAMR-RGISGGQKKRLTTGE 355
T+++ GLD +G R R +SGGQ++ +
Sbjct: 581 --------------------TEFVRRHPDGLD----MQIGE--RGRSLSGGQRQAVALAR 614
Query: 356 MIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPETFDL 410
++ L +DE T+ +D+ + + +++ + T ++ SLL DL
Sbjct: 615 ALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLL-------DL 665
Query: 411 FDDIILMAEGKIVYHGPQDHVLA 433
D II+M G+IV GP+D VL
Sbjct: 666 VDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 59/186 (31%), Positives = 87/186 (46%), Gaps = 30/186 (16%)
Query: 889 LTALMGVSGAGKTTLM-------DVLAGRKTSGYV--EGEIKISGYPKVQETFARVSGYC 939
+TAL+G SG GK+TL+ D++ G K +G + +GE I G V + +V G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGE-DIYGNIDVADLRIKV-GMV 88
Query: 940 EQTDIHSPN---ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DAIKDSLVGI 995
Q PN +++ E+V + LR + K E V L L D +KD L
Sbjct: 89 FQ----KPNPFPMSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRL-KS 141
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGR---T 1052
GLS Q++RL IA + P +I MDEPT+ LD I ++ ++ + T
Sbjct: 142 HAF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALD----PIATHKIEELMEELKKNYT 196
Query: 1053 IVCTIH 1058
IV H
Sbjct: 197 IVIVTH 202
|
Length = 249 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-09
Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 16/207 (7%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVS 936
L +V +RP + ALMG +GAGK+TL+ L G G I G + ++ +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD--SGSILFQGKE-IDFKSSKEA 70
Query: 937 GYCEQTDIHSP-NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
+ +H N+ ++ SV+ + WL P TK FV++ + AI D L I
Sbjct: 71 LENGISMVHQELNLVLQRSVMDNMWLGRYP-----TKGMFVDQDKMYRDTKAIFDEL-DI 124
Query: 996 -----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTG 1050
V LS Q + + IA N I+ MDEPT+ L + + ++ + G
Sbjct: 125 DIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERG 184
Query: 1051 RTIVCTIHQPSIDIFEAFDELILLKTG 1077
IV H+ +IF+ DE+ +L+ G
Sbjct: 185 CGIVYISHKME-EIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 3e-09
Identities = 61/236 (25%), Positives = 97/236 (41%), Gaps = 41/236 (17%)
Query: 868 GFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGY 925
F + +L + +T L+G +G GK+TL L+G R G V + K Y
Sbjct: 8 WFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDY 67
Query: 926 PK-----VQETFARVSGYCEQ----TDIHSP------NITVEESVIFSAWLRLAPEINSK 970
K +++ A V EQ TDI S N+ V E+ I
Sbjct: 68 SKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEI-------------- 113
Query: 971 TKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1030
V+E L ++ + + LS Q+KR+ IA LV + +DEPT G
Sbjct: 114 --TRRVDEALTLVDAQHFRHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAG 166
Query: 1031 LDARAAAIVMRAVKNIVNTGRTIVCTIHQPSID-IFEAFDELILLKTGGRIIYCGP 1085
LD ++ ++ IV G ++ + H ID I+E D + +L+ G + + P
Sbjct: 167 LDPAGRTQMIAIIRRIVAQGNHVIISSH--DIDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 59/266 (22%)
Query: 178 KSLEAKIN---ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVT-GEVSY 233
K+L A +N IL ++ + G + ++GP G GKST K ++G+ P+ K+ G++ +
Sbjct: 11 KNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH--PAYKILEGDILF 68
Query: 234 NGYKLEEFVPPKTS------AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSR 287
G + + P + + A+ Q + I GV + + + +
Sbjct: 69 KGESILDLEPEERAHLGIFLAF--QYPIEIP---------------GVSNADFLRLAYNS 111
Query: 288 REKEAGIVPDPDID--TYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISG 345
+ K G P++D +++ I+ K LK++G+D + + + G SG
Sbjct: 112 KRKFQG---LPELDPLEFLEIINEK-----------LKLVGMD---PSFLSRNVNEGFSG 154
Query: 346 GQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAP 405
G+KKR +M + ++ +DE +GLD I I +L+ +S LI+ Q
Sbjct: 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ--- 211
Query: 406 ETFDLFDDII-----LMAEGKIVYHG 426
L D I +M GKI+ G
Sbjct: 212 ---RLLDYIKPDYVHVMQNGKIIKTG 234
|
Length = 252 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 24/195 (12%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGY----------P 926
L+D+T G L+G SGAGK++L+ VL + G + I+G
Sbjct: 18 LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDK 75
Query: 927 KVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLA--PEINSKTKAEFVNEVLETIE 984
+++ V +Q ++ P++TV+E++I A R+ + + +AE ++L+ +
Sbjct: 76 AIRDLRRNVGMVFQQYNLW-PHLTVQENLI-EAPCRVLGLSKDQALARAE---KLLKRLR 130
Query: 985 LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
L D P LS Q++R+ IA L+ P ++ DEPT LD A ++ +K
Sbjct: 131 LKPYADRY---P--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIK 185
Query: 1045 NIVNTGRTIVCTIHQ 1059
+ TG T V H+
Sbjct: 186 ELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 70/262 (26%), Positives = 109/262 (41%), Gaps = 29/262 (11%)
Query: 852 QDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRK 911
Q+ + DT +R F LL+ ++ + G +T L+G +G+GK+TL+ +L GR
Sbjct: 2 QEYTNHSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRH 60
Query: 912 TSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNITVEESVIF------SAWLR 962
EGEI + P + FAR Y Q + +TV E V A R
Sbjct: 61 QPP-SEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGR 119
Query: 963 LAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 1022
K V E + + L + L V+ LS +R+R IA+ + + +
Sbjct: 120 FGAADREK-----VEEAISLVGLKPLAHRL-----VDSLSGGERQRAWIAMLVAQDSRCL 169
Query: 1023 FMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAF---DELILLKTGG 1078
+DEPT+ LD V+ V + G T++ +H DI A D L+ L+ G
Sbjct: 170 LLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLH----DINMAARYCDYLVALRGGE 225
Query: 1079 RIIYCGPLGKHSSQVIEYFEGI 1100
I P + +E GI
Sbjct: 226 MIAQGTPAELMRGETLEQIYGI 247
|
Length = 265 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 4e-09
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 33/191 (17%)
Query: 880 VTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFA--RV 935
V+ + G + +G +GAGK+T M ++ G SG V+ + G +Q R
Sbjct: 21 VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQ----VCGEDVLQNPKEVQRN 76
Query: 936 SGYCEQTDIHSP---NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL 992
GY + H+P ++ V E + F A + K + V E++E L
Sbjct: 77 IGYLPE---HNPLYLDMYVREYLQFIAGIYGMKGQLLKQR---VEEMIE----------L 120
Query: 993 VGIPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047
VG+ + LS R+R+ +A L+ +P ++ +DEPTTGLD + +KNI
Sbjct: 121 VGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI- 179
Query: 1048 NTGRTIVCTIH 1058
+TI+ + H
Sbjct: 180 GKDKTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 4e-09
Identities = 70/277 (25%), Positives = 122/277 (44%), Gaps = 56/277 (20%)
Query: 843 PFEPLTVAFQDLKYYVDTPLEM--------RERG----------FADRKLRLLYDVTGSL 884
P + A + L +D+P E R RG + R L ++ +
Sbjct: 296 PMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVI 355
Query: 885 RPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVE---GEIKISGYP-------KVQETFAR 934
PG AL+G SG+GK+TL++++ + E G+I + G+ ++ A
Sbjct: 356 EPGETVALVGRSGSGKSTLVNLI-----PRFYEPDSGQILLDGHDLADYTLASLRRQVAL 410
Query: 935 VSGYCEQTDIHSPNITVEESVIFSAWLRLAP--EINSKTKA----EFVNEVLETIELDAI 988
VS D+ N T+ ++ + A EI A +FV+++ +
Sbjct: 411 VS-----QDVVLFNDTIANNIAYGR-TEQADRAEIERALAAAYAQDFVDKLPLGL----- 459
Query: 989 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN 1048
D+ +G GV LS QR+RL IA L+ + I+ +DE T+ LD + +V A++ ++
Sbjct: 460 -DTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ 517
Query: 1049 TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
GRT + H+ S E D ++++ GRI+ G
Sbjct: 518 -GRTTLVIAHRLS--TIEKADRIVVMDD-GRIVERGT 550
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 4e-09
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 18/159 (11%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGR-KTSGYVEGEIKISGYP-KVQETFAR 934
L V+ + G +T ++G +G GKTTL+ L G G I++ G R
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGEDITKLPPHER 72
Query: 935 VS---GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDS 991
Y Q P +TVEE+ L + + +E+ EL +
Sbjct: 73 ARAGIAYVPQGREIFPRLTVEEN------LLTGLAALPRRSRKIPDEIY---ELFPVLKE 123
Query: 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1030
++G G + LS Q+++L IA LV P ++ +DEPT G
Sbjct: 124 MLGRRGGD-LSGGQQQQLAIARALVTRPKLLLLDEPTEG 161
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 4e-09
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 32/214 (14%)
Query: 883 SLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYV--EGEIKISGYP-------KVQETFA 933
+L G AL+G SGAGKT+L++ L G++ +G +KI+G ++ +
Sbjct: 372 TLPAGQRIALVGPSGAGKTSLLNAL-----LGFLPYQGSLKINGIELRELDPESWRKHLS 426
Query: 934 RVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE--LD-AIKD 990
V Q + P+ T+ ++V+ ++ + +V+E L + LD I D
Sbjct: 427 WVG----Q-NPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGD 481
Query: 991 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTG 1050
GLS Q +RL +A L+ ++ +DEPT LDA + +VM+A+
Sbjct: 482 ------QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQ 535
Query: 1051 RTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
T++ T HQ ++ +D+ I + G+I+ G
Sbjct: 536 TTLMVT-HQ--LEDLAQWDQ-IWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-09
Identities = 65/256 (25%), Positives = 105/256 (41%), Gaps = 53/256 (20%)
Query: 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP 244
NIL+ +S +K T ++G G GKST K L G +GE+ NG+ L++
Sbjct: 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDI--- 541
Query: 245 KTSAYISQNDLHIAEMTV----RETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI 300
D H + +E FS GS E ++ ++
Sbjct: 542 ---------DRHTLRQFINYLPQEPYIFS------GSILENLLLGAKENVS--------Q 578
Query: 301 DTYMKAISVKGVKRTLQTDYILKI-LGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVG 359
D A + +K D I + LG + ISGGQK+R+ ++
Sbjct: 579 DEIWAACEIAEIK-----DDIENMPLGYQTELSEEGSS-----ISGGQKQRIALARALLT 628
Query: 360 PTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI--SLLQPAPETFDLFDDIILM 417
+K L +DE T+ LD+ T +I + L+++ D T + L A ++ D II++
Sbjct: 629 DSKVLILDESTSNLDTITEKKI---VNNLLNLQDKTIIFVAHRLSVAKQS----DKIIVL 681
Query: 418 AEGKIVYHGPQDHVLA 433
GKI+ G D +L
Sbjct: 682 DHGKIIEQGSHDELLD 697
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 63/218 (28%), Positives = 95/218 (43%), Gaps = 28/218 (12%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFA 933
L ++G +R G + L+G +GAGK+TL+ +AG TSG G I+ +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSG--SGSIQFAGQPLEAWSATELA 71
Query: 934 RVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLV 993
R Y Q +P W L KT+ E +N+V + LD D L
Sbjct: 72 RHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVAGALALD---DKLG 120
Query: 994 GIPGVNGLSTE--QRKRLT---IAVELVANPS--IIFMDEPTTGLDARAAAIVMRAVKNI 1046
N LS QR RL + + ANP+ ++ +DEP LD + + R + +
Sbjct: 121 --RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178
Query: 1047 VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
G IV + H + + A LLK G+++ G
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHA-HRAWLLK-RGKLLASG 214
|
Length = 248 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 5e-09
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L ++ ++ G +LGP GCGKST L+ ++G P+ +GEV +G + P
Sbjct: 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTG--PGP 72
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSRE 279
Y+ Q D + +TV + V +G E
Sbjct: 73 DIGYVFQEDALLPWLTVLDNVALGLELRGKSKAE 106
|
Length = 248 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 5e-09
Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 26/206 (12%)
Query: 887 GVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFAR-----VSGYCEQ 941
G +TA++G SG+GK+TL++++AG +T G + I+G V T A VS ++
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQS--GRVLING---VDVTAAPPADRPVSMLFQE 78
Query: 942 TDIHSPNITVEESVIF--SAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVN 999
++ ++TVE++V S L+L E + L + L ++ L G
Sbjct: 79 NNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEV-----ALARVGLAGLEKRLPG----- 127
Query: 1000 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD-ARAAAIVMRAVKNIVNTGRTIVCTIH 1058
LS +R+R+ +A LV + ++ +DEP LD A A ++ + T T++ H
Sbjct: 128 ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTH 187
Query: 1059 QPSIDIFEAFDELILLKTGGRIIYCG 1084
QP D ++ L GRI G
Sbjct: 188 QPE-DAKRLAQRVVFLDN-GRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 7e-09
Identities = 56/276 (20%), Positives = 112/276 (40%), Gaps = 40/276 (14%)
Query: 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLK---ALSGNLDPSLKVTGEVSYNGYKLEE 240
+ +L+ ++ + G L+GP G GKST L+ L + ++V GE Y+
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH------ 66
Query: 241 FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI 300
+P + + ++ H+ +M +G ++ + + P
Sbjct: 67 -MPGRNGPLVPADEKHLRQMR-----------NKIGMVFQSFNLFPHKTVLDNVTEAP-- 112
Query: 301 DTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGP 360
+ V G+ R +++L + AD + M +SGGQ++R+ +
Sbjct: 113 ------VLVLGMARAEAEKRAMELLDMVGLADKA--DHMPAQLSGGQQQRVAIARALAMR 164
Query: 361 TKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420
K + DE+T+ LD +++ I++L D T L+ + + D + +G
Sbjct: 165 PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRVCFFDKG 223
Query: 421 KIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVL 456
+IV G D + FR P+ + +FL +V+
Sbjct: 224 RIVEQGKPDEI--------FRQPKEERTREFLSKVI 251
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 8e-09
Identities = 65/256 (25%), Positives = 99/256 (38%), Gaps = 55/256 (21%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF---V 242
I++ V PG +T LLGP G GKST L+ L+G L P G V G L
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRA 72
Query: 243 PPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
+ A + Q+ +TVR+ V + + R AG D D
Sbjct: 73 RARRVALVEQDSDTAVPLTVRDVV--------------ALGRIPHRSLWAG---DSPHDA 115
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK 362
+ D L L AD + +SGG+++R+ + K
Sbjct: 116 AV-------------VDRALARTELSHLADRDMST-----LSGGERQRVHVARALAQEPK 157
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL------FDDIIL 416
L +DE TN LD + +A +++L T T + +L DL D +++
Sbjct: 158 LLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAAL-------HDLNLAASYCDHVVV 209
Query: 417 MAEGKIVYHGPQDHVL 432
+ G++V GP VL
Sbjct: 210 LDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 8e-09
Identities = 57/234 (24%), Positives = 93/234 (39%), Gaps = 58/234 (24%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKLEEFVPP 244
L +++ + +T ++GP GCGKSTF+K L+ + P++K+TGE++YNG +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI------ 81
Query: 245 KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
++ VD V R+ M ++ P D
Sbjct: 82 -----------------LKGKVDL------VELRKNIGMVF----QKGNPFPQSIFDNVA 114
Query: 305 KAISVKGVKRTLQTDYI----LKILGL-DVCADTMVGNAMRRGISGGQKKRLTTGEMIVG 359
+ G K + I LK + L D D + A+ +SGGQ++RL +
Sbjct: 115 YGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQAL--SLSGGQQQRLCIARALAT 172
Query: 360 PTKALFMDEITNGLDSSTAYQI------------IACI----QQLVHITDSTAL 397
L MDE T+ LD + +I I + QQ ++D TA
Sbjct: 173 NPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAF 226
|
Length = 259 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 9e-09
Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 43/189 (22%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIKISG--- 924
+ L+DV + +TA +G SG GK+T + D + G + V G+I + G
Sbjct: 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDI 88
Query: 925 YPK---VQETFARVSGYCEQTDIHSPN---ITVEESVIFSAWLRLAPEIN--SKTKAEFV 976
Y V E ARV G Q PN ++ E+V + P I+ +++KAE +
Sbjct: 89 YDPRLDVVELRARV-GMVFQ----KPNPFPKSIYENVAY------GPRIHGLARSKAE-L 136
Query: 977 NEVLETIEL------DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1030
+E++ET L + +KD L PG GLS Q++RL IA + +P +I MDEP +
Sbjct: 137 DEIVET-SLRKAGLWEEVKDRL-HEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSA 193
Query: 1031 LDARAAAIV 1039
LD A A V
Sbjct: 194 LDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 64/251 (25%), Positives = 103/251 (41%), Gaps = 61/251 (24%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG--YKLEE 240
K +L+ +S +K G + LGP G GK+T +K + G + P +GE++++G Y+
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNI 68
Query: 241 FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI 300
+ A I + +T RE + AR +G R++ + EV
Sbjct: 69 EALRRIGALIEAPGFY-PNLTARENLRLLAR--LLGIRKKRIDEV--------------- 110
Query: 301 DTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGP 360
L ++GL A V G S G K+RL ++G
Sbjct: 111 ---------------------LDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLGN 144
Query: 361 TKALFMDEITNGLDSSTAYQIIACIQQLVHI---TDSTALIS--LLQPAPETFDLFDDII 415
L +DE TNGLD I +++L+ T LIS LL E + D I
Sbjct: 145 PDLLILDEPTNGLDP----DGIKELRELILSLRDQGITVLISSHLLS---EIQKVADRIG 197
Query: 416 LMAEGKIVYHG 426
++ +GK++ G
Sbjct: 198 IINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 43/193 (22%), Positives = 74/193 (38%), Gaps = 48/193 (24%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+ + +S L G +L GP G GK+T L+ ++G L P G + +G +++ +
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDVAE 73
Query: 246 TSAYIS-QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
Y+ +N + +TV E ++F A G EE + A
Sbjct: 74 ACHYLGHRNAMK-PALTVAENLEFWAAFLG---GEELDIA------AA------------ 111
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKAL 364
L+ +GL A G +S GQK+R+ ++V
Sbjct: 112 -----------------LEAVGLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRPIW 149
Query: 365 FMDEITNGLDSST 377
+DE T LD++
Sbjct: 150 ILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 61/265 (23%), Positives = 106/265 (40%), Gaps = 59/265 (22%)
Query: 179 SLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKL 238
S + K +L ++ +KPG ++GP G GK+T + L DP G++ +G +
Sbjct: 11 SYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDI 67
Query: 239 EEFVPPKTS-----AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAG 293
+ + S + Q D + T+ E + G T EV KEAG
Sbjct: 68 RDI--SRKSLRSMIGVVLQ-DTFLFSGTIMENIRL-------GRPNATDEEVIEAAKEAG 117
Query: 294 IVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTT 353
I L Y DT++G +S G+++ L
Sbjct: 118 A--HDFI-------------MKLPNGY-----------DTVLGEN-GGNLSQGERQLLAI 150
Query: 354 GEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPETF 408
++ K L +DE T+ +D+ T I +++L+ T++I S ++ A
Sbjct: 151 ARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLSTIKNA---- 204
Query: 409 DLFDDIILMAEGKIVYHGPQDHVLA 433
D I+++ +GKI+ G D +LA
Sbjct: 205 ---DKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 167 MISVLPKLS-GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL 225
M L+ GY ILN +S L G++T L+GP GCGKST LK + L P
Sbjct: 1 MTLRTENLTVGY----GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-- 54
Query: 226 KVTGEVSYNGYKLEEFVPPKTSAYIS---QNDLHIAEMTVRETVDF 268
+G V + + + ++ Q+ L +TVRE V +
Sbjct: 55 -QSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAY 99
|
Length = 255 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 1e-08
Identities = 58/266 (21%), Positives = 98/266 (36%), Gaps = 70/266 (26%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
++ VS L+ G L+G G GKST + L+G L PS +G + ++G
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDG----------- 352
Query: 247 SAYISQNDLHIAEMTVRETVDFSARCQGV-----------GSREETMMEVSRREKEAGIV 295
++T E R Q V + + + E R
Sbjct: 353 ---------QDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG---- 399
Query: 296 PDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTG- 354
G +R + +L+++GL + +SGGQ++R+
Sbjct: 400 -------------GSGAERRARVAELLELVGLP----PEFLDRYPHELSGGQRQRVAIAR 442
Query: 355 EMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTAL-IS-----LLQPAPETF 408
+ + P K L +DE + LD S Q++ ++ L T L IS + A
Sbjct: 443 ALALEP-KLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA---- 497
Query: 409 DLFDDIILMAEGKIVYHGPQDHVLAF 434
D + +M +G+IV GP + V
Sbjct: 498 ---DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 68/249 (27%), Positives = 104/249 (41%), Gaps = 56/249 (22%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS---LKVTGE-VSYNGYKLEEFV 242
L ++ + G M LLGP G GKST +G L P+ + + GE + Y+ L E
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV- 76
Query: 243 PPKTSAYISQN-DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDID 301
KT + QN D + TV E V F G+ + EV +R KEA
Sbjct: 77 -RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGL-----SKEEVEKRVKEA--------- 121
Query: 302 TYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPT 361
+KA+ ++G + +SGGQKKR+ ++
Sbjct: 122 --LKAVGMEGFENKPP-----------------------HHLSGGQKKRVAIAGILAMKP 156
Query: 362 KALFMDEITNGLDSSTAYQIIACIQQL----VHITDSTALISLLQPAPETFDLFDDIILM 417
+ + +DE T+GLD A QI+ + L + I ST + L P D + +M
Sbjct: 157 EIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL---VPV---YADKVYVM 210
Query: 418 AEGKIVYHG 426
++GKI+ G
Sbjct: 211 SDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 41/192 (21%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L +V+ + G + L+GP GCGKST L + G L TGE+ N +L+ +
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 246 TSAYI-SQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
I Q+ L ++V + + F+
Sbjct: 77 RQIGILFQDALLFPHLSVGQNLLFAL---------------------------------- 102
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKAL 364
++KG R + L+ GLD +SGGQ+ R+ ++ KAL
Sbjct: 103 -PATLKGNARRNAANAALERSGLDGAFHQDPAT-----LSGGQRARVALLRALLAQPKAL 156
Query: 365 FMDEITNGLDSS 376
+DE + LD +
Sbjct: 157 LLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 46/229 (20%)
Query: 197 GRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTS--AYISQND 254
G +LLGP GCGK+T L+ ++G +P+ +G + G + +PPK A + QN
Sbjct: 26 GEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGG-RDVTDLPPKDRDIAMVFQNY 81
Query: 255 LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKR 314
MTV + + F + + V E+ R V+ V
Sbjct: 82 ALYPHMTVYDNIAFGLKLRKVPKD-----EIDER--------------------VREVAE 116
Query: 315 TLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLD 374
LQ +++L + + +SGGQ++R+ G IV K MDE + LD
Sbjct: 117 LLQIEHLL--------------DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
Query: 375 SSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423
+ Q+ A +++L T I + E + D I +M +G+I
Sbjct: 163 AKLRVQMRAELKRL-QQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 24/185 (12%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGR--KTSGYVEGEIKISGYPKV-------Q 929
DV+ L PG + ++G SG+GKTTL+ ++GR +G V ++ + +
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83
Query: 930 ETFARVS-GYCEQTDIHSPNITVEESV-----IFSAWLRLAPEINSKTKAEFVNEVLETI 983
R G+ Q + V + + R I + +++ EV I
Sbjct: 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRA-EAQDWLEEV--EI 140
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
+LD I D +P S ++RL IA LV P ++FMDEPT GLD A ++ +
Sbjct: 141 DLDRIDD----LP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL 194
Query: 1044 KNIVN 1048
+ +V
Sbjct: 195 RGLVR 199
|
Length = 258 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-08
Identities = 70/288 (24%), Positives = 110/288 (38%), Gaps = 69/288 (23%)
Query: 788 LTFLKS----SGSSRVMISH---------EKLAKMQESEDSSYGEPVKENSRSTPMTNKE 834
L LK G + + I+H +++ MQ GE V+ + T +
Sbjct: 197 LDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQH------GEIVETGTTETLFAAPQ 250
Query: 835 SYKGRMVLPFEP-------------------LTVAFQDLKYYVDTPLEMRERGFADRKLR 875
R +L EP L V F + GF R +
Sbjct: 251 HPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWF------------PIKGGFLRRTVD 298
Query: 876 LLYDVTG---SLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETF 932
L V G +LR G L+G SG+GK+TL L S +GEI+ G +
Sbjct: 299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSR 355
Query: 933 ARVSGYCEQTDI--------HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 984
+ + + SP +TV + +I P++++ + + V E LE +
Sbjct: 356 KEMRPLRRRMQVVFQDPYGSLSPRMTVGQ-IIEEGLRVHEPKLSAAERDQRVIEALEEVG 414
Query: 985 LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
LD + P + S QR+R+ IA L+ P +I +DEPT+ LD
Sbjct: 415 LD--PATRNRYP--HEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 59/273 (21%), Positives = 107/273 (39%), Gaps = 53/273 (19%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKLEE---- 240
LN ++ + ++T L+GP GCGKSTFL+ L+ +L ++K+ GEV +G + +
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 241 -FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPD 299
K + Q M++ + V + R G+ ++E V K+A +
Sbjct: 80 VVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAAL----- 133
Query: 300 IDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVG 359
D D + +A+ +SGGQ++RL I
Sbjct: 134 ---------------------------WDEVKDDLKKSAL--KLSGGQQQRLCIARTIAV 164
Query: 360 PTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419
+ MDE T+ LD + +I + +L + +Q A D + LM
Sbjct: 165 KPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSD-YTAFFLM-- 221
Query: 420 GKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFL 452
G ++ + + F P++K D++
Sbjct: 222 GDLIEFNKTEKI--------FLEPQKKETEDYI 246
|
Length = 251 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-08
Identities = 57/217 (26%), Positives = 90/217 (41%), Gaps = 26/217 (11%)
Query: 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQET 931
+ L V ++ PG + AL+G +GAGK+TLM VL+G T G + I Y K+
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI--TINNINYNKLDHK 75
Query: 932 FARVSG----YCEQTDIHSPNITVEESVIFSAWLRL-------APEINSKTKAEFVNEVL 980
A G Y E + I +TV E++ R I+ + +L
Sbjct: 76 LAAQLGIGIIYQELSVIDE--LTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMML 130
Query: 981 ETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM 1040
+ L D V LS ++ L IA L+ + +I MDEPT+ L + +
Sbjct: 131 LRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF 185
Query: 1041 RAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
+ + G IV H+ + +I D ++K G
Sbjct: 186 LIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-08
Identities = 59/230 (25%), Positives = 108/230 (46%), Gaps = 34/230 (14%)
Query: 868 GFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYV--EGEIKISGY 925
+ D+ +L ++ ++ G AL+G +G GK+TL+ +L T + +GEI ++G
Sbjct: 347 TYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQ 402
Query: 926 PKVQETFARVSGYCEQTDIHSPNITVEESV-IFSAWLR--LAPEINSKTKAEFVNEVLET 982
P ++ Y E + V + V +FSA LR L + + + EVL+
Sbjct: 403 P--------IADYSEAA-LRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALI-EVLQQ 452
Query: 983 IELDAIKDSLVGIPGVNG--------LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
+ L+ + L G+N LS +++RL IA L+ + ++ +DEPT GLDA
Sbjct: 453 VGLEKL---LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509
Query: 1035 AAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
++ + +T++ H+ + E FD + ++ G+II G
Sbjct: 510 TERQILELLAE-HAQNKTVLMITHR--LTGLEQFDRICVMD-NGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 2e-08
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L+ +S ++ G + +LGP G GKST LK L+G L PS +GE+ +G L PK
Sbjct: 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASL-SPK 69
Query: 246 TSA----YISQ 252
A Y+ Q
Sbjct: 70 ELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 49/218 (22%), Positives = 78/218 (35%), Gaps = 48/218 (22%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
K+ + L+ VS ++ G L GP G GK+T LK L G L PS G+V G
Sbjct: 8 SKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGE 64
Query: 237 KLEEFVPPKTSAY------ISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREK 290
+ + + Q+ + + TV E V +G RE +R
Sbjct: 65 DVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKERE------IQRRV 118
Query: 291 EAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKR 350
A L+ +GL + +SGG+++R
Sbjct: 119 GA----------------------------ALRQVGL---EHKADAFPEQ--LSGGEQQR 145
Query: 351 LTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQL 388
+ IV L DE T LD + +I+ +++L
Sbjct: 146 VAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRL 183
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 44/196 (22%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
L VS + G + ++LGP GCGK+T L ++G + PS G + NG ++E P
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGA 74
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
+ QN+ + + V + V F + +G+ +
Sbjct: 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQ-------------------------- 108
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
R +L ++GL+ + +SGG ++R+ + + L
Sbjct: 109 --------RREIAHQMLALVGLEGAEHKYIWQ-----LSGGMRQRVGIARALAVEPQLLL 155
Query: 366 MDEITNGLDSSTAYQI 381
+DE LD+ T Q+
Sbjct: 156 LDEPFGALDALTREQM 171
|
Length = 259 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 64/262 (24%), Positives = 110/262 (41%), Gaps = 67/262 (25%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L VS + G+ ++GP G GKST L+ L D S +G + +G + E
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIRE----- 67
Query: 246 TSAYISQNDL--HIA---EMTV--RETVDFSARCQGVGSREETMMEVSRREKEAGIVPDP 298
++ + L I + TV +T+ ++ R + +E ++E + K A I
Sbjct: 68 ----VTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAA---KAAQIHD-- 118
Query: 299 DIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG--ISGGQKKRLTTGEM 356
KI+ DT+VG RG +SGG+K+R+
Sbjct: 119 ------------------------KIMRFPDGYDTIVG---ERGLKLSGGEKQRVAIARA 151
Query: 357 IVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPETFDLF 411
I+ L +DE T+ LD+ T +I A ++ + T ++ S + A
Sbjct: 152 ILKNPPILLLDEATSALDTHTEREIQAALRDV--SKGRTTIVIAHRLSTIVNA------- 202
Query: 412 DDIILMAEGKIVYHGPQDHVLA 433
D II++ +G+IV G + +LA
Sbjct: 203 DKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-08
Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 56/257 (21%)
Query: 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP 244
+L +S +K G LLG GCGKST L+ L+ DP GE+ NG + ++
Sbjct: 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADY--- 407
Query: 245 KTSAYISQNDLHIAEMTVRETVD-FSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTY 303
S+ L A V + V FSA + R+ P+ D
Sbjct: 408 ------SEAALRQAISVVSQRVHLFSA---------------TLRDNLLLAAPNAS-DEA 445
Query: 304 MKAISVK-GVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK 362
+ + + G+++ L+ D GL + +G R+ +SGG+++RL ++
Sbjct: 446 LIEVLQQVGLEKLLEDD-----KGL----NAWLGEGGRQ-LSGGEQRRLGIARALLHDAP 495
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQLVHITDSTA------LISLLQPAPETFDLFDDIIL 416
L +DE T GLD+ T QI+ + + H + T L L Q FD I +
Sbjct: 496 LLLLDEPTEGLDAETERQILELLAE--HAQNKTVLMITHRLTGLEQ--------FDRICV 545
Query: 417 MAEGKIVYHGPQDHVLA 433
M G+I+ G +LA
Sbjct: 546 MDNGQIIEQGTHQELLA 562
|
Length = 574 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 30/180 (16%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIKISG---YP 926
L+D++ + +TA +G SG GK+TL+ D++ + +EGEI++ G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 927 K---VQETFARVSGYCEQTDIHSPN---ITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 980
K V E RV G Q PN ++ E+V++ LRL N + E V L
Sbjct: 97 KKVDVAELRRRV-GMVFQ----RPNPFPKSIYENVVYG--LRLQGINNRRVLDEAVERSL 149
Query: 981 ETIEL-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1039
L D +KD L GLS Q++RL IA + P ++ +DEPT+ LD + +
Sbjct: 150 RGAALWDEVKDRL-HENAF-GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI 207
|
Length = 272 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-08
Identities = 64/251 (25%), Positives = 101/251 (40%), Gaps = 76/251 (30%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQN 253
+K G M LLGP GCGK+T L+ ++G P+ G++ +G E V T I Q
Sbjct: 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDG----EDV---THRSIQQR 78
Query: 254 DLHIA--------EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
D+ + M++ E V + + GV E +R KEA
Sbjct: 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKE-----ERKQRVKEA------------- 120
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
L+++ L D V ISGGQ++R+ ++ K L
Sbjct: 121 ----------------LELVDLAGFEDRYVDQ-----ISGGQQQRVALARALILKPKVLL 159
Query: 366 MDEITNGLDSS---TAYQIIACIQQLVHIT------DSTALISLLQPAPETFDLFDDIIL 416
DE + LD++ + + I +QQ +IT D + E F + D +I+
Sbjct: 160 FDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS----------EAFAVSDTVIV 209
Query: 417 MAEGKIVYHGP 427
M +GKI+ G
Sbjct: 210 MNKGKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 60/196 (30%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 858 VDTPLEMRERGFADR--KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLA 908
+ +P +M RG + + L+D++ +TAL+G SG GK+T + D++
Sbjct: 1 MASPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIP 60
Query: 909 GRKTSGYVEGEIKISGYP------KVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLR 962
G + VEGEI + G V E RV G Q P ++ E+V + LR
Sbjct: 61 GAR----VEGEILLDGENIYDPHVDVVELRRRV-GMVFQKPNPFPK-SIFENVAYG--LR 112
Query: 963 LAPEINSKTKAEFVNEVLETIEL-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSI 1021
+ + AE V L L D +KD L GLS Q++RL IA L P +
Sbjct: 113 VNGVKDKAYLAERVERSLRHAALWDEVKDRLH--ESALGLSGGQQQRLCIARALAVEPEV 170
Query: 1022 IFMDEPTTGLDARAAA 1037
+ MDEP + LD A
Sbjct: 171 LLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 30/206 (14%)
Query: 892 LMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISG-YPKVQETFARVSGYCEQTDIHS---- 946
++G SG+GK+TL+ G S Y G I++ Y ++ + I +
Sbjct: 57 IIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDKKNNHELITNPYSKKIKNFKEL 114
Query: 947 ----------PNI-----TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDS 991
P T+E+ ++F + +K A+F L + LD
Sbjct: 115 RRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFY---LNKMGLD--DSY 169
Query: 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGR 1051
L P GLS Q++R+ IA L P I+ DEPT GLD + +M+ + + +
Sbjct: 170 LERSP--FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNK 227
Query: 1052 TIVCTIHQPSIDIFEAFDELILLKTG 1077
T+ H + E DE+I++ G
Sbjct: 228 TVFVITHTME-HVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 2e-08
Identities = 59/258 (22%), Positives = 101/258 (39%), Gaps = 73/258 (28%)
Query: 197 GRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQND 254
+T L+GP GCGKST+L+ L+ +L P + +TG VS G + P +
Sbjct: 31 NEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG---QNIYAPNEDVVQLRKQ 87
Query: 255 LHIA-------EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAI 307
+ + ++ E V + R GV + V D ++T +K
Sbjct: 88 VGMVFQQPNPFPFSIYENVIYGLRLAGVKDKA---------------VLDEAVETSLKQA 132
Query: 308 SVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMD 367
++ D D + +A+ +SGGQ++R+ ++ + +D
Sbjct: 133 AI-----------------WDEVKDHLHESAL--SLSGGQQQRVCIARVLAVKPDVILLD 173
Query: 368 EITNGLD--SSTA-----------YQIIAC---IQQLVHITDSTALISLLQPAPETFDLF 411
E T+ LD SST Y II + Q I+D TA F L
Sbjct: 174 EPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTA-----------FFLT 222
Query: 412 DDIILMAEGKIVYHGPQD 429
++I A+ K ++ P++
Sbjct: 223 GNLIEFADTKQMFLNPKE 240
|
Length = 252 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 19/220 (8%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTT----LMDVLAGRKTSGYVEGEIKISGYPKVQET 931
L+ D+ SL+ G + AL+G SG+GK+ ++ +L T GEI + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQ--TSGEILLDGRP-LLPL 57
Query: 932 FAR--VSGYCEQTDIHS--PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA 987
R Q + P T+ I + LR +++ + +A + E LE + L
Sbjct: 58 SIRGRHIATIMQNPRTAFNPLFTMGNHAIET--LRSLGKLSKQARALIL-EALEAVGLPD 114
Query: 988 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047
++ L P LS +R+ IA+ L+ P + DEPTT LD A V++ ++ +
Sbjct: 115 PEEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR 172
Query: 1048 NT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086
G I+ H + + DE+ ++ GRI+ G +
Sbjct: 173 QLFGTGILLITHDLGV-VARIADEVAVMDD-GRIVERGTV 210
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 2e-08
Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 31/199 (15%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIKISG---YP 926
L ++ + + A +G SG GK+T + D++ + +EGEI+I G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 927 KVQET--FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNE-VLETI 983
K + + G Q P ++ E+V + LR +N F+ + V ET+
Sbjct: 75 KGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LR----VNGVKDNAFIRQRVEETL 127
Query: 984 E----LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1039
+ D +KD L LS Q++RL IA + +PS++ MDEP + LD + A V
Sbjct: 128 KGAALWDEVKDKLK--ESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
Query: 1040 MRAVKNIVNTGRTIVCTIH 1058
+ + TIV H
Sbjct: 186 EELIHELKKD-YTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 863 EMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKI 922
E+ F L +V+ +L+ G + AL+G +G+GK+TL+ +AG GEI I
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT--SGEILI 58
Query: 923 SGYPKVQETFARVS---GYCEQ 941
G + + GY Q
Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 59/255 (23%), Positives = 104/255 (40%), Gaps = 56/255 (21%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L+ VS + G + LLGP G GK+T L+ ++G P +G + + G + VP +
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATD-VPVQE 73
Query: 247 S--AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
++ Q+ MTV + V F R + R E+ + E
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPE-AEIRAKVHE------------- 119
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKAL 364
+LK++ LD AD +SGGQ++R+ + K L
Sbjct: 120 ----------------LLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVL 158
Query: 365 FMDEITNGLDSSTAYQIIACIQQL---VHITDSTALISLLQPAPETFDLFDDIILMAEGK 421
+DE LD+ ++ +++L +H+T T ++ Q E ++ D +++M +G+
Sbjct: 159 LLDEPFGALDAKVRKELRRWLRRLHDELHVT--TVFVTHDQ--EEALEVADRVVVMNKGR 214
Query: 422 I--------VYHGPQ 428
I VY P
Sbjct: 215 IEQVGTPDEVYDHPA 229
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 49/210 (23%), Positives = 77/210 (36%), Gaps = 49/210 (23%)
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE 240
E +++IL V ++K G ++GP G GKST L L+G DPS +GEV G L +
Sbjct: 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHK 76
Query: 241 F-------VPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAG 293
+ + ++ Q+ I +T E V +G S + ++ EA
Sbjct: 77 LDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSAD--SRAGAKALLEA- 133
Query: 294 IVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTT 353
+GL +SGG+++R+
Sbjct: 134 -------------------------------VGLGKRLTHYPAQ-----LSGGEQQRVAL 157
Query: 354 GEMIVGPTKALFMDEITNGLDSSTAYQIIA 383
G LF DE T LD +T +I
Sbjct: 158 ARAFAGRPDVLFADEPTGNLDRATGDKIAD 187
|
Length = 228 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-08
Identities = 53/251 (21%), Positives = 97/251 (38%), Gaps = 62/251 (24%)
Query: 792 KSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNK----ESYKGRMVLPFEPL 847
+S + + ++L K++ + P+ + G++VL FE +
Sbjct: 273 AASKAKKAKSRIKRLEKLEARL-----AEERPVEEGKPLAFRFPPPGKRLGKLVLEFENV 327
Query: 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVL 907
+ + + LL D++ + G A++G +GAGK+TL+ +L
Sbjct: 328 SKGYDGGRL-------------------LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLL 368
Query: 908 AGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEI 967
AG G + G +K+ V+ GY +Q H + +++V+ L E
Sbjct: 369 AG--ELGPLSGTVKVG--ETVK------IGYFDQ---HRDELDPDKTVL--EELS---EG 410
Query: 968 NSKTKAEFVNEVLETIELDAIKDSLVGIPG------VNGLSTEQRKRLTIAVELVANPSI 1021
+ V L G G V LS ++ RL +A L+ P++
Sbjct: 411 FPDGDEQEVRAYLGR----------FGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNL 460
Query: 1022 IFMDEPTTGLD 1032
+ +DEPT LD
Sbjct: 461 LLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 64/255 (25%), Positives = 99/255 (38%), Gaps = 59/255 (23%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
IL VS + G +T +LG G GK+T LK L G L +G + +G + + P +
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHE 71
Query: 246 TS----AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDID 301
+ AY+ Q +TV E + T + R +PD +I
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENL-------------LTGLAALPRRSRK--IPD-EIY 115
Query: 302 TYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG--ISGGQKKRLTTGEMIVG 359
+LK M+G RRG +SGGQ+++L +V
Sbjct: 116 ELFP---------------VLK---------EMLG---RRGGDLSGGQQQQLAIARALVT 148
Query: 360 PTKALFMDEITNGLDSSTAYQIIACIQQ-LVHITDSTALISLL--QPAPETFDLFDDIIL 416
K L +DE T G+ S II I + + + + LL Q +L D +
Sbjct: 149 RPKLLLLDEPTEGIQPS----IIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYV 204
Query: 417 MAEGKIVYHGPQDHV 431
M G++V G D +
Sbjct: 205 MERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 3e-08
Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 28/218 (12%)
Query: 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQET 931
L L ++ + G LT ++G G GK++L+ + G + G V K P + T
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEAT 73
Query: 932 FARVSGYCEQTDIHSP---NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI 988
+R + Y P N TVEE++ F + P + KA V + L
Sbjct: 74 RSR-NRYSVAYAAQKPWLLNATVEENITFGS-----PFNKQRYKA-----VTDACSLQPD 122
Query: 989 KDSL-------VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMR 1041
D L +G G+N LS QR+R+ +A L N +I+F+D+P + LD + +M+
Sbjct: 123 IDLLPFGDQTEIGERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQ 181
Query: 1042 A--VKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
+K + + RT+V H+ + D +I +K G
Sbjct: 182 EGILKFLQDDKRTLVLVTHK--LQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 15/198 (7%)
Query: 883 SLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFAR--VSGYCE 940
++ G + A+MG SGAGK+TL++++AG G IK++ + VS +
Sbjct: 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 941 QTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNG 1000
+ ++ ++TV +++ L L P + K AE +V++ + I D L +P
Sbjct: 78 ENNLF-AHLTVRQNI----GLGLHPGL--KLNAEQQEKVVDAAQQVGIADYLDRLP--EQ 128
Query: 1001 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQ 1059
LS QR+R+ +A LV I+ +DEP + LD ++ VK + + RT++ H
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188
Query: 1060 PSIDIFEAFDELILLKTG 1077
S D ++ ++ G
Sbjct: 189 LS-DARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-08
Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 28/195 (14%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYV--EGEIKISGYPKVQ----- 929
L + ++RPG AL+G SGAGK+TL +L Y G I + G Q
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL----LRFYDPQSGRILLDGVDLRQLDPAE 411
Query: 930 --ETFARVSGYCEQTDIHSPNI---TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 984
A V P + +V E++ + E+ + +A +E +
Sbjct: 412 LRARMALVP--------QDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--A 461
Query: 985 LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
L D+ +G GV LS QR+R+ IA ++ + I+ +DE T+ LDA + +V +A++
Sbjct: 462 LPEGYDTYLGERGV-TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE 520
Query: 1045 NIVNTGRTIVCTIHQ 1059
++ GRT + H+
Sbjct: 521 TLM-KGRTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 59/257 (22%), Positives = 99/257 (38%), Gaps = 62/257 (24%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L+ VS ++PGR LLGP G GKST L+ G++S G+ L P
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 247 SAYI----SQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
A + Q L + +++VR+ + + A G +SR E A I
Sbjct: 73 LARLGVVFQQPTLDL-DLSVRQNLRYHAALHG----------LSRAEARARI-------- 113
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK 362
+L LGL AD V R ++GG ++R+ ++
Sbjct: 114 ----------------AELLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPA 152
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQLVHITDS------TALISLLQPAPETFDLFDDIIL 416
L +DE T GLD ++ I A ++ L T L+ ++ D +++
Sbjct: 153 LLLLDEPTVGLDPASRAAITAHVRALA-RDQGLSVLWATHLVDEIEAD-------DRLVV 204
Query: 417 MAEGKIVYHGPQDHVLA 433
+ G+++ G +
Sbjct: 205 LHRGRVLADGAAAELRG 221
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 4e-08
Identities = 63/267 (23%), Positives = 109/267 (40%), Gaps = 60/267 (22%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
+S+EA +I S + G + LG G GKST LK L+G L P+ +G+V NG
Sbjct: 34 ERSIEAVQDI----SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGK 86
Query: 237 ----KLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEA 292
+ EE++ + Q ++ ++ +EV + E
Sbjct: 87 DPFRRREEYL-RSIGLVMGQKLQLWWDLPALDS-----------------LEVLKLIYE- 127
Query: 293 GIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLT 352
+PD L D++ +IL L + + +R+ +S GQ+ R
Sbjct: 128 --IPD------------DEFAERL--DFLTEILDL----EGFLKWPVRK-LSLGQRMRAE 166
Query: 353 TGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFD--- 409
++ P K LF+DE T GLD + I +++ +T L+ FD
Sbjct: 167 LAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL-----TTHIFDDIA 221
Query: 410 -LFDDIILMAEGKIVYHGPQDHVLAFF 435
L D ++L+ +G++V+ G + F
Sbjct: 222 TLCDRVLLIDQGQLVFDGTLAQLQEQF 248
|
Length = 325 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 4e-08
Identities = 62/237 (26%), Positives = 97/237 (40%), Gaps = 29/237 (12%)
Query: 870 ADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY------VEGEIKIS 923
A R +L D++ + PG +TAL+G +GAGK+TL+ LAG T G V G++ ++
Sbjct: 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLN 69
Query: 924 GYPKVQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAW--LRLAPEINSKTKAEFVNE 978
G P AR+ Q + + E V+ + R A + + E +
Sbjct: 70 GEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDG-EIAWQ 128
Query: 979 VLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVEL---------VANPSIIFMDEPTT 1029
L A +LVG V LS + R+ A L P + +DEPT
Sbjct: 129 ALAL----AGATALVG-RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTA 183
Query: 1030 GLDARAAAIVMRAVKNIVNTGRTIVCTI-HQPSIDIFEAFDELILLKTGGRIIYCGP 1085
LD ++ V+ + V I H P++ A D + +L G I+ G
Sbjct: 184 ALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA-DRIAML-ADGAIVAHGA 238
|
Length = 272 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 4e-08
Identities = 76/310 (24%), Positives = 120/310 (38%), Gaps = 91/310 (29%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L ++ +K G +T +LG G GKST + L+G L PS +G + ++G
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDG----------- 67
Query: 247 SAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKA 306
+ +D+S + +M++ RE + DPD + +
Sbjct: 68 -----------------KPIDYSRK---------GLMKL--RESVGMVFQDPDNQLFSAS 99
Query: 307 ----ISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR-GI-----------SGGQKKR 350
+S V L D + K V NA++R GI S GQKKR
Sbjct: 100 VYQDVSFGAVNLKLPEDEVRK----------RVDNALKRTGIEHLKDKPTHCLSFGQKKR 149
Query: 351 LTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL 410
+ ++V K L +DE T GLD +I+ + ++ T +I+ T D+
Sbjct: 150 VAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-------THDI 202
Query: 411 ------FDDIILMAEGKIVYHGPQDHVLA---FFEDCGFRCPERKGVSDFLQEVLSRKDQ 461
D++ +M EG+++ G V A R P R G L E+L KD
Sbjct: 203 DIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLP-RIG---HLMEILKEKDG 258
Query: 462 AQFWLHTELP 471
F EL
Sbjct: 259 FVF---DELD 265
|
Length = 283 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 4e-08
Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 45/215 (20%)
Query: 862 LEMRE--RGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGE 919
LEM+ + F ++ L +V+ +R G + +L G +GAGK+TLM VL+G G EGE
Sbjct: 6 LEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGE 63
Query: 920 IKISGYPKVQETFARVSGYCEQTD-----IHS-----PNITVEESVIFSAWLRLAPEINS 969
I G + S + IH ++V E+ IF L EI
Sbjct: 64 IIFEGEEL------QASNIRDTERAGIAIIHQELALVKELSVLEN-IF-----LGNEI-- 109
Query: 970 KTKAEFVN---------EVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS 1020
T ++ ++L ++LD + VG G+ Q++ + IA L
Sbjct: 110 -TPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLG-----QQQLVEIAKALNKQAR 163
Query: 1021 IIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVC 1055
++ +DEPT L A+++ ++++ G I C
Sbjct: 164 LLILDEPTASLTESETAVLLDIIRDLKAHG--IAC 196
|
Length = 506 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 4e-08
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 42/222 (18%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVS 936
L + +++ G + ++G SG+GK+TL+ + + G I I G +
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDG----LKLTDD-- 67
Query: 937 GYCEQTDIHS---------------PNITVEESVIFS-AWLRLAPEINSKTKAEFVNEVL 980
+ +I+ P++TV E++ + ++ + ++ +A E+L
Sbjct: 68 ----KKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL---ELL 120
Query: 981 ETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM 1040
E + L D+ P LS Q++R+ IA L NP ++ DEPT+ LD V+
Sbjct: 121 EKVGLADKADAY---PA--QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVL 175
Query: 1041 RAVKNIVNTGRTIVCTIHQPSIDIF--EAFDELILLKTGGRI 1080
+K++ G T+V H+ F E D +I + GRI
Sbjct: 176 DVMKDLAEEGMTMVVVTHEMG---FAREVADRVIFMD-DGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 4e-08
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 886 PGV-LTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPKVQ-ETFARVSGYC 939
PG +TA+ G SG+GKTTL+ ++AG R G + G + R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 940 EQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVN 999
Q P+++V ++ + E + IEL I L +PG
Sbjct: 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFE--------RVIELLGIGHLLGRLPG-- 130
Query: 1000 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
LS +++R+ I L+++P ++ MDEP LD
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 50/183 (27%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIKISGYPKVQ 929
L + + +TAL+G SG GK+T + D++ K +EGE+ + G
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----- 69
Query: 930 ETFARVSGYCEQTDI-----------HSPN---ITVEESVIFSAWLRLAPEINS-KTKAE 974
Y D+ PN +++ ++V + P + K K +
Sbjct: 70 -----QDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAY------GPRTHGIKDKKK 118
Query: 975 FVNEVLETIELDA-----IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 1029
++E++E A +KD L GLS Q++RL IA L P ++ MDEPT+
Sbjct: 119 -LDEIVEKSLKGAALWDEVKDRLK--KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTS 175
Query: 1030 GLD 1032
LD
Sbjct: 176 ALD 178
|
Length = 250 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 5e-08
Identities = 64/271 (23%), Positives = 105/271 (38%), Gaps = 69/271 (25%)
Query: 176 GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG 235
GY LE + + + S L+PG+ L+G G GKST K ++G P +GE+ ++G
Sbjct: 486 GYSPLEPPL--IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDG 540
Query: 236 YKLEEFVPPKTSAYIS--QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAG 293
EE + ++ D+ + E TVR+ + T+ + +
Sbjct: 541 IPREEIPREVLANSVAMVDQDIFLFEGTVRDNL--------------TLWDPT------- 579
Query: 294 IVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTT 353
+PD D+ K ++ V + Y D + +SGGQ++RL
Sbjct: 580 -IPDADLVRACKDAAIHDVITSRPGGY-----------DAELAEG-GANLSGGQRQRLEI 626
Query: 354 GEMIVGPTKALFMDEITNGLDSSTAYQIIA--------CI---QQLVHITDSTALISLLQ 402
+V L +DE T+ LD T I CI +L I D
Sbjct: 627 ARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDC-------- 678
Query: 403 PAPETFDLFDDIILMAEGKIVYHGPQDHVLA 433
D+II++ GK+V G + + A
Sbjct: 679 ---------DEIIVLERGKVVQRGTHEELWA 700
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 5e-08
Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 29/212 (13%)
Query: 886 PGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFA-------RVSGY 938
G+ TAL G SG+GKT+L++++AG EG I+++G V R GY
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEKRRIGY 80
Query: 939 CEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGV 998
Q P+ TV ++ + W + + + + + L I+ L PG
Sbjct: 81 VFQDARLFPHYTVRGNLRYGMWKSMRAQFD------------QLVALLGIEHLLDRYPGT 128
Query: 999 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRT-IVCTI 1057
LS +++R+ I L+ P ++ MDEP LD ++ ++ + + I+
Sbjct: 129 --LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVS 186
Query: 1058 HQPSID-IFEAFDELILLKTGGRIIYCGPLGK 1088
H S+D + D +++L+ G++ GPL +
Sbjct: 187 H--SLDEVLRLADRVVVLEN-GKVKASGPLEE 215
|
Length = 352 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 6e-08
Identities = 54/203 (26%), Positives = 101/203 (49%), Gaps = 28/203 (13%)
Query: 889 LTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFARVS---GYCEQTD 943
+TA +G +GAGKTT + +L G TSG V + G ++ V G C Q +
Sbjct: 958 ITAFLGHNGAGKTTTLSILTGLLPPTSGTV-----LVGGKDIETNLDAVRQSLGMCPQHN 1012
Query: 944 IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLST 1003
I ++TV E ++F A L+ ++ + E +LE L ++ LS
Sbjct: 1013 ILFHHLTVAEHILFYAQLKGRSWEEAQLEME---AMLEDTGLHHKRNE-----EAQDLSG 1064
Query: 1004 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV---NTGRTIVCTIHQP 1060
+++L++A+ V + ++ +DEPT+G+D + R++ +++ +GRTI+ + H
Sbjct: 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYS----RRSIWDLLLKYRSGRTIIMSTHH- 1119
Query: 1061 SIDIFEAFDELILLKTGGRIIYC 1083
+D + + I + + GR +YC
Sbjct: 1120 -MDEADLLGDRIAIISQGR-LYC 1140
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 38/188 (20%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTL------MDVLAGRKTSGYVEGEIKISGYP 926
K + L V+ P +TAL+G SG+GK+TL M+ L T + G I +G+
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGH- 72
Query: 927 KVQETFARVSGYCEQTD-----------IHSPN---ITVEESVIFSAWLRLAPEINSKTK 972
+ Y +TD PN +++ E+V++ LRL + +
Sbjct: 73 ---------NIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYG--LRLKGIKDKQVL 121
Query: 973 AEFVNEVLETIEL-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031
E V + L+ + D +KD L GLS Q++R+ IA L +P II +DEPT+ L
Sbjct: 122 DEAVEKSLKGASIWDEVKDRLHD--SALGLSGGQQQRVCIARVLATSPKIILLDEPTSAL 179
Query: 1032 DARAAAIV 1039
D +A +
Sbjct: 180 DPISAGKI 187
|
Length = 252 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 6e-08
Identities = 66/267 (24%), Positives = 121/267 (45%), Gaps = 41/267 (15%)
Query: 847 LTVAFQDLKYYVD--TPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLM 904
+T+ F ++ Y TP E + ++DV G A++G +G+GK+TL+
Sbjct: 1 MTIRFDNVSYTYQKGTPYEHQA----------IHDVNTEFEQGKYYAIVGQTGSGKSTLI 50
Query: 905 DVLAG--RKTSGYVE-GEIKISGYPK------VQETFARVSGYCEQTDIHSPNITVEESV 955
+ + T+G V +I I+ K V++ V + E TVE +
Sbjct: 51 QNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFED---TVEREI 107
Query: 956 IFSAWLRLAPE---INSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIA 1012
IF P+ +N + + +L ++L +D + P +S Q +++ I
Sbjct: 108 IF------GPKNFKMNLDEVKNYAHRLL--MDLGFSRDVMSQSP--FQMSGGQMRKIAIV 157
Query: 1013 VELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI-VNTGRTIVCTIHQPSIDIFEAFDEL 1071
L NP II +DEPT GLD ++ VMR +K++ + +TI+ H + ++ DE+
Sbjct: 158 SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEV 216
Query: 1072 ILLKTGGRIIYCGP--LGKHSSQVIEY 1096
I++K G + P L K ++ ++
Sbjct: 217 IVMKEGSIVSQTSPKELFKDKKKLADW 243
|
Length = 286 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 7e-08
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTAL 397
+SGGQ++R+ ++ L +DE T+GLD ++ +++ +++L T +
Sbjct: 76 GYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-AEEGRTVI 134
Query: 398 ISLLQPAPETFDLFDDIILMAEGK 421
I P D +I++ +GK
Sbjct: 135 IVTHDP-ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 7e-08
Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 15/201 (7%)
Query: 862 LEMRE--RGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGE 919
LEM+ + F K L + +RPG L G +GAGK+TLM +L+G G +GE
Sbjct: 2 LEMKGIVKTFGGVKA--LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGE 59
Query: 920 IKISGYP----KVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRL-APEINSKTKAE 974
I SG P +++T Q P ++V E++ + L +
Sbjct: 60 IYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL 119
Query: 975 FVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
+L ++LDA + V Q++ + IA L ++ +DEP++ L +
Sbjct: 120 RAKNLLRELQLDADNVTR----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEK 175
Query: 1035 AAAIVMRAVKNIVNTGRTIVC 1055
I++ ++++ G + C
Sbjct: 176 ETEILLDIIRDLKAHG--VAC 194
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 7e-08
Identities = 58/226 (25%), Positives = 95/226 (42%), Gaps = 31/226 (13%)
Query: 864 MRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIK 921
+ R + L DV+ + G L+G +GAGK+TL+ +LAG S G +
Sbjct: 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS----GTVT 80
Query: 922 ISGYPKVQETFARVSGYCE-QTDIHSPNITVEESVIFSAWL--RLAPEINSKTKAEFVNE 978
+ G RVS + P +T E++ + L EI E ++E
Sbjct: 81 VRG---------RVSSLLGLGGGFN-PELTGRENIYLNGRLLGLSRKEI-----DEKIDE 125
Query: 979 VLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 1038
++E EL D P V S+ + RL A+ P I+ +DE DA
Sbjct: 126 IIEFSELGDFIDL----P-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEK 180
Query: 1039 VMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
R ++ ++ G+T++ H PS I D ++L+ G+I + G
Sbjct: 181 CQRRLRELLKQGKTVILVSHDPSS-IKRLCDRALVLE-KGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 7e-08
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 20/218 (9%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGR-KTSGYVEGEIKISGYPKVQETFA-- 933
L +++ L G AL+G +G+GK+TLM K S G I I+GY ET
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKN 79
Query: 934 ------RVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA 987
+VS + + TV + V F P+ ++ E + L+ ++
Sbjct: 80 LKKLRKKVSLVFQFPEAQLFENTVLKDVEF------GPKNFGFSEDEAKEKALKWLKKVG 133
Query: 988 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047
+ + L+ LS Q +R+ IA + P I+ +DEP GLD +M+ K+
Sbjct: 134 LSEDLISKSPFE-LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ 192
Query: 1048 NTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
G T++ H D+ E D++++L+ G I + P
Sbjct: 193 KAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKHASP 229
|
Length = 287 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 8e-08
Identities = 66/279 (23%), Positives = 115/279 (41%), Gaps = 63/279 (22%)
Query: 179 SLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVT-GEVSYNGYK 237
+E K IL V+ +K G + ++GP G GKST + G+ P +VT GE+ ++G
Sbjct: 12 EVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH--PKYEVTEGEILFDG-- 67
Query: 238 LEEFVPPKTSAYISQNDLHIAEMTVRE------TVDFS--ARCQGVGSREETMMEVSRRE 289
++ I E++ E + F GV + + ++ R
Sbjct: 68 --------------ED---ILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARR 110
Query: 290 KEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKK 349
GI+P+ +K +K ++LGLD + + + G SGG+KK
Sbjct: 111 GARGILPE----------FIKELKE------KAELLGLD---EEFLERYVNEGFSGGEKK 151
Query: 350 RLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIA-CIQQLVHITDSTALISLLQPAPETF 408
R ++++ K +DE +GLD A +I+A I L +I+ Q
Sbjct: 152 RNEILQLLLLEPKLAILDEPDSGLD-IDALKIVAEGINALREEGRGVLIITHYQ------ 204
Query: 409 DLFDDII-----LMAEGKIVYHGPQDHVLAFFEDCGFRC 442
L D I ++ +G+IV G + + E+ G+
Sbjct: 205 RLLDYIKPDKVHVLYDGRIVKSGDPE-LAEELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 9e-08
Identities = 67/277 (24%), Positives = 117/277 (42%), Gaps = 69/277 (24%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP- 244
++ +S +K G LLGP GCGK+T L+ ++G PS +GE+ +G + VPP
Sbjct: 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDG-EDITDVPPE 75
Query: 245 -KTSAYISQN-DL--HIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI 300
+ + Q+ L H MTV E V F + + + E+ R +EA
Sbjct: 76 KRPIGMVFQSYALFPH---MTVEENVAFGLKVRKKLKKA----EIKARVEEA-------- 120
Query: 301 DTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG--ISGGQKKRLTTGEMIV 358
L+++GL+ G A R+ +SGGQ++R+ +V
Sbjct: 121 ---------------------LELVGLE-------GFADRKPHQLSGGQQQRVALARALV 152
Query: 359 GPTKALFMDEITNGLDS---STAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415
K L +DE + LD+ + + +Q+ + IT + + E + D I
Sbjct: 153 PEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT----FVYVTHDQEEALAMSDRIA 208
Query: 416 LMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFL 452
+M +G+I G + + + P + V+DF+
Sbjct: 209 VMNDGRIEQVGTPEEI--------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG---YKLEEFV 242
+LN VS ++ G + LLGP G GKST L+ ++G +P +G + +G LE+ +
Sbjct: 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDEL 71
Query: 243 PP--KTSAYISQNDLHIAEMTVRETVDF 268
PP + + Q+ +TV E +
Sbjct: 72 PPLRRRIGMVFQDFALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 61/296 (20%), Positives = 107/296 (36%), Gaps = 61/296 (20%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L+ +S +K G + LLGP G GKST L+ ++G P G + NG L +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAV 74
Query: 247 SA----YISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
++ Q+ MTV + + F + R+E E R + +
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKV-----RKERPSEAEIRARVEEL-------- 121
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGE-MIVGPT 361
L + + + +SGGQ++R+ + V P
Sbjct: 122 ------------------------LRLVQLEGLADRYPAQLSGGQRQRVALARALAVEP- 156
Query: 362 KALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLL--QPAPETFDLFDDIILMAE 419
K L +DE LD+ ++ + L + D + ++ E +L D ++++ +
Sbjct: 157 KVLLLDEPFGALDAKVRKEL---RRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQ 213
Query: 420 GKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEV--LSRKDQAQFWLHTELPYS 473
G+I GP D V + P + V+ FL EV L +
Sbjct: 214 GRIEQVGPPDEV--------YDHPASRFVARFLGEVNVLPGEVILGQLQVGAHDIG 261
|
Length = 345 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 51/240 (21%), Positives = 92/240 (38%), Gaps = 46/240 (19%)
Query: 196 PGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK--TSAYISQN 253
G + +LGP G GKST L ++G P +GE+ NG P + S +N
Sbjct: 24 AGEIVAILGPSGAGKSTLLNLIAGFETP---ASGEILINGVDHTASPPAERPVSMLFQEN 80
Query: 254 DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVK 313
+L A +TV + + G+ P + + +
Sbjct: 81 NL-FAHLTVAQNIGL------------------------GLSP---------GLKLNAEQ 106
Query: 314 RTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGL 373
R + + +GL + G +SGGQ++R+ +V L +DE + L
Sbjct: 107 RE-KVEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCLVREQPILLLDEPFSAL 160
Query: 374 DSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLA 433
D + +++A + QL T L+ P + + D ++ + G+I G +L+
Sbjct: 161 DPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-07
Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 30/212 (14%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYV--EGEIKISGYPKVQETFAR 934
L +T +L PG + AL+G SG+GK+T+ +L + Y G++ + G P VQ
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALL----QNLYQPTGGQVLLDGVPLVQ----- 547
Query: 935 VSGYCEQTDIHSPNITV-EESVIFSAWLR--LAPEINSKTKAEFVNEVLETIELDAIK-- 989
+ +H V +E V+FS +R +A + E + D I
Sbjct: 548 ----YDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEF 603
Query: 990 ----DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045
D+ VG G + LS Q++R+ IA LV P ++ +DE T+ LDA ++ +
Sbjct: 604 PNGYDTEVGEKG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRS- 661
Query: 1046 IVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
RT++ H+ S E D++++LK G
Sbjct: 662 --RASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 5/172 (2%)
Query: 1219 LDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARERTVMYREGFAGM-YSPWAYALAQV 1277
L N + L + + + + ++ E+ +E SP Y L ++
Sbjct: 86 LFNPNSGYAYYLLGLLLFLLI-LIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKI 144
Query: 1278 TVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFCTMMFYNYLGMLLVSLTPNSM 1337
+ LL+ + +II + G L + Y LG LL SL NS
Sbjct: 145 ---LGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSE 201
Query: 1338 IASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWALNAMVTSQYG 1389
A ++ S+ L + F G L P P +P + W++ ++P ++ ++ YG
Sbjct: 202 AAILVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYG 253
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 21/208 (10%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVS 936
L DV+ ++ G T+++G +G+GK+T+ ++ G + GEI + + F ++
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLR 82
Query: 937 GYC----EQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL 992
+ + D V+ V F P V+E L+ +++ D
Sbjct: 83 KHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMH---RRVSEALKQVDMLERADY- 138
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI-VNTGR 1051
N LS Q++R+ IA L NPS+I +DE T+ LD A ++ V+ +
Sbjct: 139 ----EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNI 194
Query: 1052 TIVCTIHQPSIDIFEAF--DELILLKTG 1077
TI+ H D+ EA D +I++ G
Sbjct: 195 TIISITH----DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 19/218 (8%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGR-----KTSGYVE---GEIKISGYPKVQE 930
DV+ L PG + ++G SG+GK+TL+ LAGR T+ Y+ E+++ + +
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80
Query: 931 TF-ARVS-GYCEQTDIHSPNITVEESV-IFSAWLRLAPEINSKTKAEFVNEVLETIELDA 987
R G+ Q + V I + + +A + LE +E+D
Sbjct: 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAT-AQDWLEEVEIDP 139
Query: 988 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047
+ +P S ++RL IA LV P ++FMDEPT GLD A ++ ++ +V
Sbjct: 140 --TRIDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 195
Query: 1048 -NTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
+ G ++ H + A L++++ GR++ G
Sbjct: 196 RDLGLAVIIVTHDLGVARLLA-QRLLVMQQ-GRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 17/165 (10%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYV---EGEIKISGYPKV 928
DV+ +TA++G SG GK+T++ D++ + +G + + +I G V
Sbjct: 22 DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81
Query: 929 QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DA 987
+ R G Q P +++ ++VI A +L +N E V L+ + L D
Sbjct: 82 --SIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDE 137
Query: 988 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
+KD L LS Q++RL IA + P +I MDEP + LD
Sbjct: 138 VKDRLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 20/154 (12%)
Query: 883 SLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGY---- 938
+L G + AL+G +GAGK+TLM ++AG G ++I G P + T A+
Sbjct: 33 TLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAKAHQLGIYL 90
Query: 939 CEQTDIHSPNITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDAIKDSLVGIPG 997
Q + PN++V+E+++F L + + + + + + ++LD+ S
Sbjct: 91 VPQEPLLFPNLSVKENILF----GLPKRQASMQKMKQLLAALGCQLDLDSSAGS------ 140
Query: 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031
L R+ + I L+ + I+ +DEPT L
Sbjct: 141 ---LEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 24/213 (11%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETF-- 932
L DV+ S+ G A++G +G+GK+TL +L G +G I + G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG----TITVGGMVLSEETVWD 78
Query: 933 --ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKD 990
+V + D TV++ V F E + E V V + + ++D
Sbjct: 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGL------ENIGVPREEMVERVDQALRQVGMED 132
Query: 991 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTG 1050
L P + LS Q++R+ IA L P II +DE T+ LD R V+ V+ +
Sbjct: 133 FLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190
Query: 1051 RTIVCTI-HQPSIDIFE-AFDELILLKTGGRII 1081
V +I H D+ E A + +++ G I+
Sbjct: 191 GITVLSITH----DLDEAAQADRVIVMNKGEIL 219
|
Length = 279 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-07
Identities = 58/267 (21%), Positives = 100/267 (37%), Gaps = 57/267 (21%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
++ + L+ VS + G + ++G G GKST L+ ++ P+ +G V +G
Sbjct: 12 GQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQ 68
Query: 237 KLEEFVPPKTSA------YISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREK 290
L + I Q+ ++ TV E V F GV + E
Sbjct: 69 DLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV----------PKAEI 118
Query: 291 EAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKR 350
+ R + +L+++GL AD +SGGQK+R
Sbjct: 119 KQ---------------------RVAE---LLELVGLSDKADRYPAQ-----LSGGQKQR 149
Query: 351 LTTGEMIVGPTKALFMDEITNGLDSSTAYQIIAC---IQQLVHITDSTALISLLQPAPE- 406
+ + K L DE T+ LD T I+ I + + +T I L+ E
Sbjct: 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLT-----IVLITHEMEV 204
Query: 407 TFDLFDDIILMAEGKIVYHGPQDHVLA 433
+ D + ++ +G++V G V A
Sbjct: 205 VKRICDRVAVLDQGRLVEEGTVSEVFA 231
|
Length = 339 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 57/252 (22%), Positives = 101/252 (40%), Gaps = 46/252 (18%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
LN +S + G ++G G GKST L A++G+L P+ +G++ +G + K
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVT-----K 72
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
S A + R D A + EE + R K+ G+
Sbjct: 73 KSVA------KRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSS--------- 117
Query: 306 AISVKGVKRTLQTDYILKI----LGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPT 361
+ ++ + ++ LGL+ +G +SGGQ++ L+ + P
Sbjct: 118 -----ALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPP 167
Query: 362 KALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI---SLLQPAPETFDLFDDIILMA 418
K L +DE T LD TA ++ ++V T L+ ++ D + +I++
Sbjct: 168 KILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED----ALDYGNRLIMLH 223
Query: 419 EGKIV--YHGPQ 428
GKIV G +
Sbjct: 224 SGKIVLDVTGEE 235
|
Length = 263 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 55/252 (21%), Positives = 103/252 (40%), Gaps = 52/252 (20%)
Query: 202 LLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTS-AYISQNDLHIAEM 260
+LGP G GKS L+ ++G + P +G++ NG + P K +Y+ QN M
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHM 86
Query: 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDY 320
TV + + + + +V ++E E V + L D+
Sbjct: 87 TVYKNIAYGLK----------KRKVDKKEIER---------------KVLEIAEMLGIDH 121
Query: 321 ILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQ 380
+L N +SGG+++R+ +V K L +DE + LD T +
Sbjct: 122 LL--------------NRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEK 167
Query: 381 IIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGF 440
+ ++++ T + + E + L D + +M GK++ G + V F
Sbjct: 168 LREELKKIRKEFGVTV-LHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV--------F 218
Query: 441 RCPERKGVSDFL 452
+ P+ + V++FL
Sbjct: 219 KKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 61/249 (24%), Positives = 93/249 (37%), Gaps = 64/249 (25%)
Query: 202 LLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP--KTSAYISQNDLHIAE 259
LLGP GCGK+T L+ L+G P +G + +G + VPP + + Q+
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTN-VPPHLRHINMVFQSYALFPH 56
Query: 260 MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTD 319
MTV E V F + + V E R V R +Q
Sbjct: 57 MTVEENVAFGLKMRKVPRAEIK----PR---------------------VLEALRLVQ-- 89
Query: 320 YILKILGLDVCADTMVGNAMRRGI--SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSST 377
+ A R+ SGGQ++R+ +V K L +DE + LD
Sbjct: 90 --------------LEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKL 135
Query: 378 AYQI---IACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV--------YHG 426
Q+ + IQ+ + IT + + E + D I +M +GKI Y
Sbjct: 136 RDQMQLELKTIQEQLGIT----FVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191
Query: 427 PQDHVLAFF 435
P + +A F
Sbjct: 192 PANLFVARF 200
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 60/265 (22%), Positives = 100/265 (37%), Gaps = 83/265 (31%)
Query: 196 PGR-MTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQ 252
P R +T L+GP GCGKST L+ L+ +L +K+TG+++ +G + I
Sbjct: 27 PARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI--------YGNIDV 78
Query: 253 NDLHIA-----------EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDID 301
DL I M++ E V + R QG+ ++ V R + A + +
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE---- 134
Query: 302 TYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPT 361
VK L + G+SGGQ++RL I
Sbjct: 135 ----------VKDRL--------------------KSHAFGLSGGQQQRLCIARTIAMEP 164
Query: 362 KALFMDEITNGLDSSTAYQI----------------IACIQQLVHITDSTALISLLQPAP 405
+ MDE T+ LD ++I +QQ I+D TA
Sbjct: 165 DVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTA--------- 215
Query: 406 ETFDLFDDIILMAEGKIVYHGPQDH 430
F L +++ + ++++ P+D
Sbjct: 216 --FFLMGELVEHDDTQVIFSNPKDD 238
|
Length = 249 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 25/198 (12%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L + S+ G + A+MG +G+GK+TL V+AG +EG+I G +
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 936 S------GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEV--LETIELDA 987
+ + Q I P ++ + +LRLA NSK K + + E+ LE +E+
Sbjct: 82 AHLGIFLAF--QYPIEIPGVSNAD------FLRLA--YNSKRKFQGLPELDPLEFLEIIN 131
Query: 988 IKDSLVGIP------GVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM 1040
K LVG+ VN G S ++KR I + + + +DE +GLD A I+
Sbjct: 132 EKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIA 191
Query: 1041 RAVKNIVNTGRTIVCTIH 1058
+ ++ + +I+ H
Sbjct: 192 EGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 68/258 (26%), Positives = 107/258 (41%), Gaps = 57/258 (22%)
Query: 190 VSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAY 249
VS L PG + ++G G GK+T LK +SG L P G V Y++
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTV---TYRMR---------- 68
Query: 250 ISQNDLHIAEMTVRETVDFSARCQ-GV---GSREETMMEVSRREKEAGIVPDPDIDTYMK 305
+ M+ E R + G R+ M+VS AG +I +
Sbjct: 69 -DGQPRDLYTMSEAER-RRLLRTEWGFVHQNPRDGLRMQVS-----AG----GNIGERLM 117
Query: 306 AISVK--GVKRTLQTDYILKI-LGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK 362
AI + G R D++ ++ + LD D + R SGG ++RL +V +
Sbjct: 118 AIGARHYGNIRAEAQDWLEEVEIDLDRIDD------LPRTFSGGMQQRLQIARNLVTRPR 171
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQLVH--------ITDSTALISLLQPAPETFDLFDDI 414
+FMDE T GLD S +++ ++ LV +T A+ LL D +
Sbjct: 172 LVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLA---------DRL 222
Query: 415 ILMAEGKIVYHGPQDHVL 432
++M +G++V G D VL
Sbjct: 223 MVMKQGQVVESGLTDRVL 240
|
Length = 258 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 58/271 (21%), Positives = 94/271 (34%), Gaps = 79/271 (29%)
Query: 188 NHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSY---NGYKLEEFVPP 244
VS L PG + ++G G GKST L L+G L P G +Y +G +LE +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLS 76
Query: 245 KTS---------AYISQNDLHIAEMTVRETVDFSARCQGVGSR------EETMMEVSRRE 289
+ ++ QN M V + R +G+R + E
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVE 136
Query: 290 KEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKK 349
+ + D + R SGG ++
Sbjct: 137 IDPTRIDD-----------------------------------------LPRAFSGGMQQ 155
Query: 350 RLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVH--------ITDSTALISLL 401
RL +V + +FMDE T GLD S +++ ++ LV +T + LL
Sbjct: 156 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLL 215
Query: 402 QPAPETFDLFDDIILMAEGKIVYHGPQDHVL 432
+++M +G++V G D VL
Sbjct: 216 A---------QRLLVMQQGRVVESGLTDQVL 237
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 2e-07
Identities = 61/202 (30%), Positives = 90/202 (44%), Gaps = 29/202 (14%)
Query: 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGY----- 925
K+ L DV+ S+ G + ++G SGAGK+TL+ + G + G + + G
Sbjct: 15 GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLL 72
Query: 926 -PKVQETFARVSGYCEQTDIHSPNI----TVEESVIFSAWLRLAP-EINSKTKAEFVNEV 979
K R G Q H N+ TV E+V P EI KAE V
Sbjct: 73 SGKELRKARRRIGMIFQ---HF-NLLSSRTVFENVAL-------PLEIAGVPKAEIEERV 121
Query: 980 LETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1039
LE +EL ++D P LS Q++R+ IA L NP ++ DE T+ LD +
Sbjct: 122 LELLELVGLEDKADAYPA--QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSI 179
Query: 1040 MRAVKNIVN--TGRTIVCTIHQ 1059
+ +++I N G TIV H+
Sbjct: 180 LALLRDI-NRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 34/219 (15%)
Query: 884 LRPGVLTALMGVSGAGKTTLMDV--LAGRKTSGYVE-GEIKISGYPKVQETFARVS---- 936
++PG + A++G SG+GKTTL+ L + +G + G+I I + + +
Sbjct: 26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQ 85
Query: 937 --GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVG 994
G+ Q P+ TV E++I P I E E A L+
Sbjct: 86 HVGFVFQNFNLFPHRTVLENII------EGPVIVKGEPKE---------EATARARELLA 130
Query: 995 IPGVNG--------LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046
G+ G LS Q++R+ IA L P +I DEPT+ LD V+ ++ +
Sbjct: 131 KVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL 190
Query: 1047 VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
RT+V H+ S + D I + GRI+ GP
Sbjct: 191 AQEKRTMVIVTHEMSF-ARDVADRAIFMD-QGRIVEQGP 227
|
Length = 250 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 25/197 (12%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIKISGY 925
K + L+D+ + +TAL+G SG GK+T + D +A K G VE E K
Sbjct: 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIA--KIDGLVEIEGKDVKN 71
Query: 926 PKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEI-----NSKTKAEFVNEVL 980
V V +Q PN+ V+ I+ + AP++ N + V + L
Sbjct: 72 QDVVALRKNVGMVFQQ-----PNVFVKS--IYEN-ISYAPKLHGMIKNKDEEEALVVDCL 123
Query: 981 ETIEL-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1039
+ + L + +KD L LS Q++RL IA L P ++ +DEPT+ LD ++ ++
Sbjct: 124 QKVGLFEEVKDKLK--QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVI 181
Query: 1040 MRAVKNIVNTGRTIVCT 1056
+K + + I+ T
Sbjct: 182 EELLKELSHNLSMIMVT 198
|
Length = 246 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 37/229 (16%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFAR 934
L D++ + G ++G +GAGK+TL+ ++AG + TS G++K++G KV
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS----GKVKVTG--KVAPLIEL 96
Query: 935 VSGYCEQTDIHSPNITVEESVIFSA-WLRLAPEINSKTKAEFVNEVLETIELDAIKDSLV 993
+G+ P +T E++ L L + E V+E++E EL D
Sbjct: 97 GAGF-------DPELTGRENIYLRGLILGLTRKEID----EKVDEIIEFAELGDFID--- 142
Query: 994 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK---NIVNTG 1050
P V S+ RL +V P I+ +DE L AA + ++ +V
Sbjct: 143 -QP-VKTYSSGMYARLAFSVATHVEPDILLLDE---VLAVGDAAFQEKCLERLNELVEKN 197
Query: 1051 RTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEG 1099
+TIV H I + D I L+ G+I G +VI +E
Sbjct: 198 KTIVLVSHDLGA-IKQYCDRAIWLE-HGQIRMEGSP----EEVIPAYEE 240
|
Length = 249 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-07
Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 17/224 (7%)
Query: 870 ADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDV--LAGRKTSG--YVEGEIKISGY 925
+ ++ L +V+ + G + ++G SGAGK+TL+ L R TSG V+G+ ++
Sbjct: 14 GTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQ-DLTTL 72
Query: 926 PKVQETFARVS-GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 984
+ T AR G Q + TV +V L P+ K K V E+L +
Sbjct: 73 SNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRK---VTELLALVG 129
Query: 985 LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
L DS P + LS Q++R+ IA L +NP ++ DE T+ LD ++ +K
Sbjct: 130 LGDKHDSY---P--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLK 184
Query: 1045 NIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087
I G TI+ H+ +D+ + + + + + G +I G +
Sbjct: 185 EINRRLGLTILLITHE--MDVVKRICDCVAVISNGELIEQGTVS 226
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 42/187 (22%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
LL ++ L G L L G +GAGKTTL+ ++AG +GEI ++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 936 SGYC---EQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL 992
C ++ I +P +T+ E+ ++ +I+ A + E+ L+ + D
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRT 1052
G+ LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 1053 IVCTIHQ 1059
++ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 28/210 (13%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEG-EIKISGYPKVQET 931
L V +++ G +L+G SG GK+TL+++++G + TSG +EG +I G P
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-PDRMVV 59
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDS 991
F S P +TV E+ I A R+ P+++ + V E + + L D
Sbjct: 60 FQNYSLL--------PWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK 110
Query: 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGR 1051
G LS ++R+ IA L P ++ +DEP LDA + + I R
Sbjct: 111 RPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 1052 -TIVCTIHQPSIDIFEAF---DELILLKTG 1077
T++ H D+ EA D +++L G
Sbjct: 166 VTVLMVTH----DVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-07
Identities = 48/201 (23%), Positives = 97/201 (48%), Gaps = 21/201 (10%)
Query: 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLA--GRKTSGYVEGEIKISGYPKV 928
+ ++ +L ++ + G + A++G SG+GK+TLM++L + TSG +++G
Sbjct: 18 EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSG----TYRVAGQDVA 73
Query: 929 Q---ETFARVS----GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLE 981
+ A++ G+ Q ++T ++V A + + K + E+L+
Sbjct: 74 TLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPA---VYAGLERKQRLLRAQELLQ 130
Query: 982 TIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMR 1041
+ L+ D + P + LS Q++R++IA L+ +I DEPT LD+ + VM
Sbjct: 131 RLGLE---DRVEYQP--SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMA 185
Query: 1042 AVKNIVNTGRTIVCTIHQPSI 1062
+ + + G T++ H P +
Sbjct: 186 ILHQLRDRGHTVIIVTHDPQV 206
|
Length = 648 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 3e-07
Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 60/249 (24%)
Query: 196 PGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE-----FVPPKTSAYI 250
+T L+G GCGKST LSG L P G V + G L+ + A +
Sbjct: 26 LSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATV 82
Query: 251 SQN-DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISV 309
Q+ + I + + FS R GV E ++RR +D + +
Sbjct: 83 FQDPEQQIFYTDIDSDIAFSLRNLGVPEAE-----ITRR-----------VDEALTLVDA 126
Query: 310 KGVK-RTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDE 368
+ + + +Q +S GQKKR+ +V + L +DE
Sbjct: 127 QHFRHQPIQC------------------------LSHGQKKRVAIAGALVLQARYLLLDE 162
Query: 369 ITNGLDSSTAYQIIACIQQLV----HITDSTALISLLQPAPETFDLFDDIILMAEGKIVY 424
T GLD + Q+IA I+++V H+ S+ I L+ +++ D + ++ +G+I+
Sbjct: 163 PTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVYVLRQGQILT 216
Query: 425 HGPQDHVLA 433
HG V A
Sbjct: 217 HGAPGEVFA 225
|
Length = 271 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 3e-07
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 30/173 (17%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIKISG---YP 926
L D+ + +TAL+G SG GK+T + D+++ K +EGE+ + G Y
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK----IEGEVLLDGKNIYD 75
Query: 927 K---VQETFARVSGYCEQTDIHSPN---ITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 980
K V E RV G Q PN +++ ++V + R+ + K + V L
Sbjct: 76 KDVDVVELRKRV-GMVFQ----KPNPFPMSIYDNVAYGP--RIHGIKDKKELDKIVEWAL 128
Query: 981 ETIEL-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
+ L D +KD L LS Q++RL IA + P +I MDEPT+ LD
Sbjct: 129 KKAALWDEVKDDLK--KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 3e-07
Identities = 66/252 (26%), Positives = 104/252 (41%), Gaps = 45/252 (17%)
Query: 197 GRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYI---SQN 253
G T ++GP GCGKST L+ LS + P G V +G ++ + + + I +QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASKEVARRIGLLAQN 89
Query: 254 DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVK 313
++TV+E V AR R +R KE D + KA+ G+
Sbjct: 90 ATTPGDITVQELV---AR-----GRYPHQPLFTRWRKE-------DEEAVTKAMQATGI- 133
Query: 314 RTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGL 373
T + DT+ SGGQ++R ++ T + +DE T L
Sbjct: 134 ----THLADQ------SVDTL---------SGGQRQRAWIAMVLAQETAIMLLDEPTTWL 174
Query: 374 DSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHG-PQDHVL 432
D S ++ + +L + L ++L + +I + EGKIV G P++ V
Sbjct: 175 DISHQIDLLELLSEL-NREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233
Query: 433 A-FFEDC-GFRC 442
A E G RC
Sbjct: 234 AELIERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 13/218 (5%)
Query: 870 ADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYV--EGEIKISGY 925
A ++ +L +V+ S+ G L+G SG GK+TL +L G + G V G+
Sbjct: 20 AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD 79
Query: 926 PKVQETFARVSGYCEQTDIHS--PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 983
K + F R Q + P +TV + I LR ++ + + E+L+ +
Sbjct: 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQ--IIGEPLRHLTSLDESEQKARIAELLDMV 137
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
L + + +P LS Q +R+ IA L P +I +DE + LD A+++ +
Sbjct: 138 GLRS--EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELL 193
Query: 1044 KNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081
+ + T I + + ++F + + + G+I+
Sbjct: 194 RKLQQAFGTAYLFITH-DLRLVQSFCQRVAVMDKGQIV 230
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (128), Expect = 3e-07
Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 15/197 (7%)
Query: 868 GFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVL--AGRKTSGY-VEGEIKISG 924
GFA + + L V+ +T+LMG +G+GKTT + L K SGY G++ + G
Sbjct: 30 GFAGKTV--LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87
Query: 925 -----YPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEV 979
Y V E F R G Q P ++ + +L P + A+ +
Sbjct: 88 RSIFNYRDVLE-FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQ--ARL 144
Query: 980 LETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1039
E DA+KD L P LS Q++ L +A L NP ++ +DEPT+ LD +
Sbjct: 145 TEVGLWDAVKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKI 202
Query: 1040 MRAVKNIVNTGRTIVCT 1056
++++ + I+ T
Sbjct: 203 EEFIRSLADRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 3e-07
Identities = 67/229 (29%), Positives = 101/229 (44%), Gaps = 39/229 (17%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPKV 928
+L ++ S+ G + ++G SG+GK+TL+ L G SG V+GE G K
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGED--VGDKKD 71
Query: 929 QETFARVSGYCEQTDIHS----PNITVEESVIFSAWLRLAPEINSKT-KAEFVNEVLETI 983
R G Q P++TV E+V LAP K KAE + LE +
Sbjct: 72 ILKLRRKVGMVFQ----QFNLFPHLTVLENVT------LAPVKVKKLSKAEAREKALELL 121
Query: 984 ELDAIKDSLVGIPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 1038
E VG+ LS Q++R+ IA L +P ++ DEPT+ LD
Sbjct: 122 EK-------VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGE 174
Query: 1039 VMRAVKNIVNTGRTIVCTIHQPSIDIF--EAFDELILLKTGGRIIYCGP 1085
V+ +K++ G T++ H+ F E D +I + G+II GP
Sbjct: 175 VLDVMKDLAEEGMTMIIVTHEMG---FAREVADRVIFMD-QGKIIEEGP 219
|
Length = 240 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 3e-07
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 21/162 (12%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGY 938
DV+ ++ G + AL+G SG GK+TL+ +LAG + G+I + G + V Y
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDG-----VDLSHVPPY 89
Query: 939 CE------QTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL 992
Q+ P++TVE+++ F + + KAE + V E + L +++
Sbjct: 90 QRPINMMFQSYALFPHMTVEQNIAFGL------KQDKLPKAEIASRVNEMLGLVHMQEFA 143
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
P + LS QR+R+ +A L P ++ +DEP LD +
Sbjct: 144 KRKP--HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
|
Length = 377 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 76/247 (30%), Positives = 119/247 (48%), Gaps = 36/247 (14%)
Query: 894 GVSGAGKTTLMDVLAGRK--TSG--YVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNI 949
G SG GK+TL+ ++AG + TSG ++ GE +++ P + R G Q+ P++
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRMNDVPPAE----RGVGMVFQSYALYPHL 90
Query: 950 TVEESVIFSAWLRLA----PEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQ 1005
+V E++ F L+LA EIN + VN+V E ++L + D P LS Q
Sbjct: 91 SVAENMSFG--LKLAGAKKEEINQR-----VNQVAEVLQLAHLLDRK---P--KALSGGQ 138
Query: 1006 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIF 1065
R+R+ I LVA PS+ +DEP + LDA A + MR I + + T+ + D
Sbjct: 139 RQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRI--EISRLHKRLGRTMIYVTHDQV 195
Query: 1066 EAF---DELILLKTGGRIIYCG-PLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTS 1121
EA D++++L GR+ G PL + + G G PK+ N+ P V
Sbjct: 196 EAMTLADKIVVLD-AGRVAQVGKPLELYHYPANRFVAGFIGSPKM--NFLPVK-VTATAI 251
Query: 1122 TSAEAEL 1128
+ EL
Sbjct: 252 EQVQVEL 258
|
Length = 369 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 4e-07
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 29/167 (17%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT--SGYV--EGEIKISGYPKVQETFAR 934
++T + G TA++G +G GK+TL+ L+ T G+V +GE I Y + AR
Sbjct: 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE-HIQHY--ASKEVAR 81
Query: 935 VSGYCEQTDIHSPNITVEESV---------IFSAWLRLAPEINSKTKAEFVNEVLETIEL 985
G Q +ITV+E V +F+ W K E V + ++ +
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRW--------RKEDEEAVTKAMQATGI 133
Query: 986 DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
+ D V+ LS QR+R IA+ L +I+ +DEPTT LD
Sbjct: 134 THLADQ-----SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 5e-07
Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 38/221 (17%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L D++ +++ T ++G+SG+GK+TL +L G + GEI ++G+
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS--GEILLNGFS--------- 537
Query: 936 SGYCEQTDIH----SPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDS 991
+ D H N +E IFS + + +K +E+ E+ IKD
Sbjct: 538 ---LKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVS-QDEIWAACEIAEIKDD 593
Query: 992 LVGIPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM 1040
+ +P G TE Q++R+ +A L+ + ++ +DE T+ LD
Sbjct: 594 IENMP--LGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEK--- 648
Query: 1041 RAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080
+ V N++N +TI+ H+ + + + D++I+L G I
Sbjct: 649 KIVNNLLNLQDKTIIFVAHR--LSVAKQSDKIIVLDHGKII 687
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 6e-07
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 26/187 (13%)
Query: 883 SLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP----KVQETFARVSGY 938
++ PG AL+G SG GK+T++ +L + GEI + G ++ +++ G
Sbjct: 25 TIPPGKTVALVGSSGCGKSTVVSLL--ERFYDPTSGEILLDGVDIRDLNLRWLRSQI-GL 81
Query: 939 CEQTDIHSP---NITVEESVIFSAWLRLAPEINSKTKA----EFVNEVLETIELDAIKDS 991
Q P + T+ E++ + E+ K +F+ + + D+
Sbjct: 82 VSQ----EPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGY------DT 131
Query: 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGR 1051
LVG G LS Q++R+ IA L+ NP I+ +DE T+ LDA + +V A+ + GR
Sbjct: 132 LVGERGSQ-LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGR 189
Query: 1052 TIVCTIH 1058
T + H
Sbjct: 190 TTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 6e-07
Identities = 57/254 (22%), Positives = 101/254 (39%), Gaps = 50/254 (19%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
++ V+ ++ G +L+GP G GK+T LK ++ ++P+ +GE+ +G + + P +
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVE 72
Query: 246 ---TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
Y+ Q +TV E + + G R +K A
Sbjct: 73 LRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKE--------RIKKRA---------- 114
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK 362
D +L ++GLD + +SGGQ++R+ +
Sbjct: 115 ----------------DELLDLVGLDPSE---YADRYPHELSGGQQQRVGVARALAADPP 155
Query: 363 ALFMDEITNGLDSSTAYQI---IACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419
L MDE LD T Q+ I +Q+ + T ++ + E L D I +M
Sbjct: 156 ILLMDEPFGALDPITRKQLQEEIKELQKELGKT----IVFVTHDIDEALKLADRIAVMDA 211
Query: 420 GKIVYHGPQDHVLA 433
G+IV + D +LA
Sbjct: 212 GEIVQYDTPDEILA 225
|
Length = 309 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 49/217 (22%)
Query: 176 GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG 235
GY + +AKI LN++S L+ G L+ GP GCGKST LK ++ + P+ +G + + G
Sbjct: 14 GYLAGDAKI--LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEG 68
Query: 236 YKLEEFVPP---KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEA 292
+ P + +Y +Q + TV + + F + +
Sbjct: 69 EDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIR------------------- 108
Query: 293 GIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLT 352
PDP I D L+ L DT++ + +SGG+K+R++
Sbjct: 109 NQQPDPAI---------------FLDD--LERFALP---DTILTKNIAE-LSGGEKQRIS 147
Query: 353 TGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLV 389
+ K L +DEIT+ LD S + + I + V
Sbjct: 148 LIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYV 184
|
Length = 225 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 7e-07
Identities = 55/247 (22%), Positives = 91/247 (36%), Gaps = 62/247 (25%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY-------KLE 239
++ V+ ++ G + LGP G GK+T ++ L+ L P+ +G GY K+
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVR 65
Query: 240 E---FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVP 296
VP S ++T RE ++ R G+ + E E
Sbjct: 66 RSIGIVPQYASVDE--------DLTGRENLEMMGRLYGL----------PKDEAEERA-- 105
Query: 297 DPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEM 356
+ +L++ L AD VG SGG ++RL
Sbjct: 106 ----------------------EELLELFELGEAADRPVG-----TYSGGMRRRLDIAAS 138
Query: 357 IVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416
++ LF+DE T GLD T I I+ L + ++ E L D I +
Sbjct: 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK--EEGVTILLTTHYMEEADKLCDRIAI 196
Query: 417 MAEGKIV 423
+ G+I+
Sbjct: 197 IDHGRII 203
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 7e-07
Identities = 64/228 (28%), Positives = 98/228 (42%), Gaps = 47/228 (20%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVL--AGRKTSGYVEGEIKISGYP--KV---- 928
+ DV+ +PG A++G +GAGK+TL+++L SG I I G V
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR----ILIDGTDIRTVTRAS 406
Query: 929 ---------QET--FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVN 977
Q+ F R + + P+ T EE +R A E
Sbjct: 407 LRRNIAVVFQDAGLFNRSIE--DNIRVGRPDATDEE-------MRAAAERA--------- 448
Query: 978 EVLETIELDAIK-DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036
+ + IE D++VG G LS +R+RL IA L+ +P I+ +DE T+ LD
Sbjct: 449 QAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPILILDEATSALDVETE 507
Query: 1037 AIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
A V A+ + GRT H+ S + A + IL+ GR++ G
Sbjct: 508 AKVKAALDE-LMKGRTTFIIAHRLST-VRNA--DRILVFDNGRVVESG 551
|
Length = 588 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 7e-07
Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 26/205 (12%)
Query: 862 LEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIK 921
+E +E ++ +L D++ G + ++G SGAGK+TL+ ++ + EG I
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSIL 61
Query: 922 ISGYP----KVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVN 977
I G V + ++ +Q H TV++++ + L+ ++ E+
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQP--HLFEGTVKDNIEYGPMLKGEKNVD----VEYY- 114
Query: 978 EVLETIELD---AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
L + L+ A +D V LS + +R++IA L NP ++ +DEPT+ LD
Sbjct: 115 --LSIVGLNKEYATRD-------VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPT 165
Query: 1035 AAAIVMRAVKNIVNT-GRTIVCTIH 1058
+ I+ + + N T++ H
Sbjct: 166 STEIIEELIVKLKNKMNLTVIWITH 190
|
Length = 241 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 7e-07
Identities = 44/194 (22%), Positives = 86/194 (44%), Gaps = 29/194 (14%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVS 936
L +++ S++PG ++G +G+GK++L +LA + G I I G
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSL--LLALFRLVELSSGSILIDGVD---------- 67
Query: 937 GYCEQTDIHS--PNITV--EESVIFSAWLR--LAPEINSKTKAEFVNEVLETIEL-DAIK 989
+ +H I++ ++ V+FS +R L P + E + + LE + L + ++
Sbjct: 68 --ISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPF-GEYSDEE-LWQALERVGLKEFVE 123
Query: 990 DSLVGIPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
G+ V LS QR+ L +A L+ I+ +DE T +D A++ + ++
Sbjct: 124 SLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR 183
Query: 1045 NIVNTGRTIVCTIH 1058
T++ H
Sbjct: 184 E-AFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 8e-07
Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 42/197 (21%)
Query: 199 MTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKL-----EEFVPPKTSAYIS 251
+T ++GP GCGKSTFL+A++ +L PS TG + ++G + +E + K +
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVF 126
Query: 252 QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKG 311
Q + ++ + + + R G+ +++ V + ++A +
Sbjct: 127 QKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAAL----------------- 168
Query: 312 VKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITN 371
D +D + NA+ G+SGGQ++RL + + L +DE T+
Sbjct: 169 ---------------WDEVSDRLDKNAL--GLSGGQQQRLCVARTLAVEPEILLLDEPTS 211
Query: 372 GLDSSTAYQIIACIQQL 388
LD +I IQ+L
Sbjct: 212 ALDPKATAKIEDLIQEL 228
|
Length = 286 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 8e-07
Identities = 69/237 (29%), Positives = 103/237 (43%), Gaps = 27/237 (11%)
Query: 851 FQDL--KYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLA 908
FQ + +Y TP E R LYDV S+ G A++G +G+GK+TL+ L
Sbjct: 5 FQKVEHRYQYKTPFERRA----------LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLN 54
Query: 909 G--RKTSGYVE-GEIKISGY--PKVQETFARVSGYCEQTDIHSP-NITVEESVIFSAWLR 962
G + TSG V GE I+ K + + G Q H TVE+ + F
Sbjct: 55 GLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF 114
Query: 963 LAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 1022
E ++K KA E++E + L + L P LS Q +R+ IA L P ++
Sbjct: 115 GVSEEDAKQKAR---EMIELVGLPE--ELLARSP--FELSGGQMRRVAIAGVLAMEPEVL 167
Query: 1023 FMDEPTTGLDARAAAIVMRAVKNI-VNTGRTIVCTIHQPSIDIFEAFDELILLKTGG 1078
+DEPT GLD + +M + G T V H D D+++++ G
Sbjct: 168 VLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 8e-07
Identities = 64/241 (26%), Positives = 106/241 (43%), Gaps = 27/241 (11%)
Query: 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVL 907
V F+ + + FA+ + ++DV+ + G A++G +GAGKTTL+++L
Sbjct: 334 AVEFRHITF-----------EFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLL 381
Query: 908 AGRKTSGYVEGEIKISG--YPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAP 965
++ G+I I G V R S D N ++ E++
Sbjct: 382 --QRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDE 439
Query: 966 EINSKTKAEFVNEVLETIELDAIK--DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIF 1023
E+ KA ++ + D+LVG G N LS +R+RL IA ++ N I+
Sbjct: 440 EVYEAAKAAAAHDFIL----KRSNGYDTLVGERG-NRLSGGERQRLAIARAILKNAPILV 494
Query: 1024 MDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYC 1083
+DE T+ LD A V A+ + + RT H+ S + A +L+L GR+I
Sbjct: 495 LDEATSALDVETEARVKNAI-DALRKNRTTFIIAHRLST-VRNA--DLVLFLDQGRLIEK 550
Query: 1084 G 1084
G
Sbjct: 551 G 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 9e-07
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 14/165 (8%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTL---MDVLAGRKTSGYVEGEIKISGYPKVQETFA 933
L ++ S+ +TA++G SG GK+T ++++ + + GE+ +G ++
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 934 RVS-----GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DA 987
V G Q P ++ ++V + R+ N K E V + L+ + L D
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALWDE 144
Query: 988 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
+KD L + LS Q++RL IA L NP ++ MDEPT+ LD
Sbjct: 145 VKDRL-HTQAL-SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 9e-07
Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 10/191 (5%)
Query: 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP---- 926
+ + + DV+ SLR G + + G+ GAG+T L+ L G G EG + I+G P
Sbjct: 270 NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKFEGNVFINGKPVDIR 328
Query: 927 -KVQETFARVSGYCEQTDIHS--PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 983
Q A ++ E H P + V +++ S ++ AE + + I
Sbjct: 329 NPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAE-LQIIGSAI 387
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
+ +K + +P + LS +++ +A L+ NP ++ +DEPT G+D A + + +
Sbjct: 388 QRLKVKTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLI 446
Query: 1044 KNIVNTGRTIV 1054
+ G I+
Sbjct: 447 NQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-06
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV 242
KI L VS ++ G + LLG G GK+T LK + G + P +G + ++G + +
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITG-L 70
Query: 243 PPKTS-----AYISQNDLHIAEMTVRE 264
PP AY+ + +TV E
Sbjct: 71 PPHERARLGIAYVPEGRRIFPRLTVEE 97
|
Length = 237 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 45/200 (22%), Positives = 88/200 (44%), Gaps = 37/200 (18%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG--YKLEEFVPPKTSAYIS 251
++ ++T L+G GCGKSTFL+ + D K+ G V G K ++ V + + +
Sbjct: 25 IEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMV 84
Query: 252 QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKG 311
++ ++ E + ++ + G+ + +++E +V D
Sbjct: 85 FQQPNVFVKSIYENISYAPKLHGM---------IKNKDEEEALVVD-------------- 121
Query: 312 VKRTLQTDYILKILGL-DVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEIT 370
L+ +GL + D + NA+ +SGGQ++RL + K L +DE T
Sbjct: 122 ---------CLQKVGLFEEVKDKLKQNAL--ALSGGQQQRLCIARALAIKPKLLLLDEPT 170
Query: 371 NGLDSSTAYQIIACIQQLVH 390
+ LD ++ I +++L H
Sbjct: 171 SALDPISSGVIEELLKELSH 190
|
Length = 246 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-06
Identities = 62/240 (25%), Positives = 103/240 (42%), Gaps = 70/240 (29%)
Query: 818 GEPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKL--- 874
G+PV ++P+ L E L VAF P+ +G R +
Sbjct: 263 GDPVPLPEPASPL-----------LDVEQLQVAF---------PIR---KGILKRTVDHN 299
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTT----LMDVLAGRKTSGYVEGEIKISGYP---- 926
++ +++ +LRPG L+G SG+GK+T L+ ++ + GEI G P
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHNL 352
Query: 927 ----------KVQETFARVSGYCEQTDIHS---PNITVEESVIFSAWLRL-APEINSKTK 972
++Q F D +S P + V + I LR+ P +++ +
Sbjct: 353 NRRQLLPVRHRIQVVF---------QDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQR 401
Query: 973 AEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
+ V V+E + LD ++ P S QR+R+ IA L+ PS+I +DEPT+ LD
Sbjct: 402 EQQVIAVMEEVGLDP--ETRHRYPA--EFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 1e-06
Identities = 67/277 (24%), Positives = 120/277 (43%), Gaps = 48/277 (17%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKAL--------SGNLDPSLKVTGEVSY-NGYK 237
L VS + +T L+GP GCGKSTFL+ L + +D S+++ G+ Y +G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 238 LEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
L E + S N ++RE + + R G + + R +K+A +
Sbjct: 121 LVELRKRVGMVFQSPNPF---PKSIRENISYGPRKHGDINTGLLARLLGRDDKDA----E 173
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMI 357
++ V+R+L+ + D D + NA+ G+SGGQ++RL +
Sbjct: 174 DEL-----------VERSLRQAAL-----WDEVNDRLDDNAL--GLSGGQQQRLCIARCL 215
Query: 358 VGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISL--LQPAPETFDLFDDII 415
+ + MDE + LD +I I++L + T ++ +Q A D +
Sbjct: 216 AVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAARISD--QTAV 271
Query: 416 LMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFL 452
+ G++V + D + FE+ PE + V D++
Sbjct: 272 FLTGGELVEYDDTDKI---FEN-----PESQRVEDYI 300
|
Length = 305 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 16/199 (8%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVL-------AGRKTSGYVEGEIKISGY 925
+L +L +V+ ++ G AL G SGAGK+TL+ L +GR + + ++
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 926 P--KVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 983
+V E + GY Q P ++ E V R P ++ +A E+L +
Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARAR---ELLARL 136
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
+ + L +P S +++R+ IA +A+ I+ +DEPT LDA +V+ +
Sbjct: 137 NIP---ERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI 192
Query: 1044 KNIVNTGRTIVCTIHQPSI 1062
G ++ H +
Sbjct: 193 AEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 28/163 (17%)
Query: 889 LTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIKISGY----PKVQETFARVS- 936
+TA++G SG GKTTL+ D + G + VEG+I G P++ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 937 GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLE-TIELDAIKDSL--- 992
G Q P +++ ++V F P I+ ++ ++E +++ A+ D +
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAF------GPRIHGVKSKHKLDRIVEESLKKAALWDEVKSE 139
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARA 1035
+ PG LS Q++RL IA L P +I +DEPT+ LD A
Sbjct: 140 LNKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 27/201 (13%)
Query: 866 ERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKIS 923
ER +R L ++ +L G L + G +GAGKT+L+ +LAG R GE+
Sbjct: 10 ERD--ER--ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQ 61
Query: 924 GYP--KVQETFARVSGYCEQTDIHSPNITVEESVIFSAW--LRLAPEINSKTKAEFVNEV 979
G P + ++ + + Y H P I E +A LR ++ E + E
Sbjct: 62 GEPIRRQRDEYHQDLLYLG----HQPGIKTE----LTALENLRFYQRLHGPGDDEALWEA 113
Query: 980 LETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1039
L + L +D V LS Q++R+ +A + + +DEP T +D + A +
Sbjct: 114 LAQVGLAGFEDVPVRQ-----LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARL 168
Query: 1040 MRAVKNIVNTGRTIVCTIHQP 1060
+ G ++ T HQ
Sbjct: 169 EALLAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 57/218 (26%), Positives = 93/218 (42%), Gaps = 22/218 (10%)
Query: 869 FADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG-RKTSGYVEGEIKISGYPK 927
+ D K L D++ S+ G TAL+G +G+GK+T+ ++ G +I + G
Sbjct: 15 YPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITL 74
Query: 928 VQETF----ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 983
+T +V + D TV + V F R P V +VL +
Sbjct: 75 TAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK---IVRDVLADV 131
Query: 984 E-LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA 1042
LD I P LS Q++R+ IA L P II +DE T+ LD +++
Sbjct: 132 GMLDYIDSE----PA--NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKL 185
Query: 1043 VKNIVN-TGRTIVCTIHQPSIDIFEA--FDELILLKTG 1077
++ + T++ H DI EA D++++L G
Sbjct: 186 IRKLKKKNNLTVISITH----DIDEANMADQVLVLDDG 219
|
Length = 282 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 57/254 (22%), Positives = 99/254 (38%), Gaps = 53/254 (20%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY--------K 237
L +++ + PG ++GP G GKST L+ ++ ++PS +G + G K
Sbjct: 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKK 73
Query: 238 LEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
L + + I Q+ I +TV E V R + T + R E
Sbjct: 74 LRKL--RRRIGMIFQHYNLIERLTVLENV-LHGRL----GYKPTWRSLLGRFSEE----- 121
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMI 357
+A+S L+ +GL A +SGGQ++R+ +
Sbjct: 122 ----DKERALS------------ALERVGLADKAYQRADQ-----LSGGQQQRVAIARAL 160
Query: 358 VGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL----FDD 413
+ DE LD T+ Q++ ++++ T +I+L Q DL D
Sbjct: 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ-----VDLAKKYADR 215
Query: 414 IILMAEGKIVYHGP 427
I+ + G+IV+ G
Sbjct: 216 IVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 49/200 (24%), Positives = 72/200 (36%), Gaps = 60/200 (30%)
Query: 178 KSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYK 237
K + +L +S + G ++GP G GKST LK L+G L P ++G V G
Sbjct: 329 KGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP---LSGTVKV-GET 384
Query: 238 LEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
++ Y Q H E+ +TV E + E
Sbjct: 385 VK-------IGYFDQ---HRDELDPDKTV------------LEELSEGF----------- 411
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI---SGGQKKRLTTG 354
PD D V+ L G G + + SGG+K RL
Sbjct: 412 PDGD----EQEVRA---------YLGRFGFT-------GEDQEKPVGVLSGGEKARLLLA 451
Query: 355 EMIVGPTKALFMDEITNGLD 374
++++ P L +DE TN LD
Sbjct: 452 KLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 54/233 (23%), Positives = 84/233 (36%), Gaps = 80/233 (34%)
Query: 198 RMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDL 255
++T L+GP GCGKSTFL+ L+ +L P +V GE+ +G + Y D
Sbjct: 33 QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG----------ENIYDPHVD- 81
Query: 256 HIAEM----------------TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPD 299
+ E+ ++ E V + R GV + V R + A +
Sbjct: 82 -VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAAL----- 135
Query: 300 IDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVG 359
D D + +A+ G+SGGQ++RL +
Sbjct: 136 ---------------------------WDEVKDRLHESAL--GLSGGQQQRLCIARALAV 166
Query: 360 PTKALFMDEITNGLDS-------------STAYQIIAC---IQQLVHITDSTA 396
+ L MDE + LD Y II +QQ ++D TA
Sbjct: 167 EPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTA 219
|
Length = 253 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 26/166 (15%)
Query: 889 LTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIH--- 945
+TA++G SG GK+T + L +EG +K+ G V + F + + Y + +I+
Sbjct: 35 VTAIIGPSGCGKSTFIKTL---NRISELEGPVKVEG---VVDFFGQ-NIYDPRININRLR 87
Query: 946 --------SPN---ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DAIKDSLV 993
PN +++ E+V + +R++ ++ E V L+ L +KD L
Sbjct: 88 RQIGMVFQRPNPFPMSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQEVKDKLN 145
Query: 994 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1039
GLS Q++RL IA L P ++ MDEP + LD A V
Sbjct: 146 --KSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSG--YVEGEIKISGYP 926
+L +V + +TAL+G SG GK+T + D++ G + G Y++G
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 927 KVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL- 985
V E +V G Q P ++ ++V + LR+ E + E V E L+ L
Sbjct: 78 DVVELRKKV-GMVFQKPNPFPK-SIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALW 133
Query: 986 DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045
D +KD L GLS Q++RL IA + +P +I MDEP + LD I +++
Sbjct: 134 DEVKDKL--DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALD----PISTTKIED 187
Query: 1046 IVNTGR---TIVCTIH 1058
+++ + TIV H
Sbjct: 188 LIHKLKEDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 35/211 (16%)
Query: 886 PGVLTALMGVSGAGKTTLMDVLAG--RKTSG---YVEGEIKISGYPKVQETFARVSGYCE 940
PG + AL+G +GAGK+T+M VL G + +G Y+ E+ +G QE A +
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE--AGIG---- 82
Query: 941 QTDIHS-----PNITVEESVIF------SAWLRLAPEINSKTKAEFVNEVLETIELDAIK 989
IH P +T+ E+ IF + + R I+ K +++L + L
Sbjct: 83 --IIHQELNLIPQLTIAEN-IFLGREFVNRFGR----IDWKKMYAEADKLLARLNLRFSS 135
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT 1049
D LVG LS +++ + IA L +I MDEPT L + R ++ + +
Sbjct: 136 DKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ 190
Query: 1050 GRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080
GR IV H+ +IFE D++ + + G I
Sbjct: 191 GRGIVYISHRLK-EIFEICDDVTVFRDGQFI 220
|
Length = 501 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 19/167 (11%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETF 932
++L D++ + G + AL+G SG+GKTTL+ ++AG +TSG+ I+ G V
Sbjct: 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH----IRFHG-TDVSRLH 70
Query: 933 A--RVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEF---VNEVLETIELDA 987
A R G+ Q ++TV +++ F L + P A V ++LE ++L
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAH 128
Query: 988 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
+ D P LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 129 LADRY---PA--QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 52/204 (25%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVS 936
L +++ L+ G AL+G SG+GK+TL+ +L G +GEI + G P V + +S
Sbjct: 18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVP-VSDLEKALS 74
Query: 937 GYCEQTDIHSPNITV--EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVG 994
I+V + +F LR + +G
Sbjct: 75 SL----------ISVLNQRPYLFDTTLR----------------------------NNLG 96
Query: 995 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIV 1054
S +R+RL +A L+ + I+ +DEPT GLD ++ + V +T++
Sbjct: 97 RR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKDKTLI 151
Query: 1055 -CTIHQPSIDIFEAFDELILLKTG 1077
T H I E D+++ L+ G
Sbjct: 152 WITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 38/223 (17%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTL-------MDVLAGRKTSGYVEGEIKISGYPKV 928
+L V ++PG + G +G+GK++L +D+ G+ ++G I IS P +
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV---IDG-IDISKLP-L 90
Query: 929 QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI 988
+R+S I +++ ++FS +R + K + + E LE +L +
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 989 KDSLVGIPGVNGLSTE--------QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM 1040
SL G G++ + TE QR+ +A V SI+ MDE T +D I+
Sbjct: 139 VKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQ 196
Query: 1041 RAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYC 1083
+ V RT+V H+ S I +A +L+L+ + G ++ C
Sbjct: 197 KVVMTAF-ADRTVVTIAHRVS-TILDA--DLVLVLSRGILVEC 235
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 41/197 (20%)
Query: 199 MTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKL-EEFVPP----KTSAYIS 251
+T ++GP GCGKST L++++ +L PS +VTG++ + + + V P + +
Sbjct: 32 VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVF 91
Query: 252 QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKG 311
Q M++ + V + G +R E D +++ +K +++
Sbjct: 92 QKPNPFPAMSIYDNVIAGYKLNGRVNRSEA---------------DEIVESSLKRVAL-- 134
Query: 312 VKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITN 371
D D + NAM +SGGQ++RL I + + MDE +
Sbjct: 135 ---------------WDEVKDRLKSNAME--LSGGQQQRLCIARTIAVKPEVILMDEPAS 177
Query: 372 GLDSSTAYQIIACIQQL 388
LD + +I I++L
Sbjct: 178 ALDPISTLKIEELIEEL 194
|
Length = 252 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 39/186 (20%)
Query: 862 LEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYV--E 917
L+++ G+ ++L +++ SLR G + G SG GK+TL+ ++A TSG + E
Sbjct: 8 LQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFE 67
Query: 918 GEIKISGYPKVQETFARVSGYCEQTDIHSPNI---TVEESVIFSAWLRLAPEINSKTKAE 974
GE IS E + + YC QT P + TV +++IF +R
Sbjct: 68 GE-DISTLKP--EIYRQQVSYCAQT----PTLFGDTVYDNLIFPWQIR------------ 108
Query: 975 FVNEVLETIELDAIKDSLV--GIP------GVNGLSTEQRKRLTIAVELVANPSIIFMDE 1026
+ + D L +P + LS +++R+++ L P ++ +DE
Sbjct: 109 -----NQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE 163
Query: 1027 PTTGLD 1032
T+ LD
Sbjct: 164 ITSALD 169
|
Length = 225 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 61/249 (24%), Positives = 105/249 (42%), Gaps = 41/249 (16%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPKVQETF 932
L +V + G L+G +G+GK+TL+ L G + TSG ++G + I+ KV+ +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDG-VDITD-KKVKLSD 80
Query: 933 AR-----VSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-- 985
R V Y E T+E+ + F P ++ E N V + +
Sbjct: 81 IRKKVGLVFQYPEYQLFEE---TIEKDIAF------GPINLGLSEEEIENRVKRAMNIVG 131
Query: 986 ---DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA 1042
+ KD LS Q++R+ IA + P I+ +DEPT GLD + ++
Sbjct: 132 LDYEDYKDK-----SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK 186
Query: 1043 VKNI-VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQV---IEYFE 1098
+K + TI+ H S++ + I++ G+ G +V +E E
Sbjct: 187 IKELHKEYNMTIILVSH--SMEDVAKLADRIIVMNKGKCELQGT----PREVFKEVETLE 240
Query: 1099 GIS-GVPKI 1106
I VP++
Sbjct: 241 SIGLAVPQV 249
|
Length = 287 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 34/187 (18%)
Query: 889 LTALMGVSGAGKTTLM-------DVLAGRKTSGYV--EGEIKISGYPKVQETFARVSGYC 939
+TAL+G SG GK+T + D++ G K G V EG+ S + E R G
Sbjct: 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE-LRRKIGMV 93
Query: 940 EQTDIHSPN---ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLE-----TIELDAIKDS 991
QT PN +++ +++ + P+I+ + ++E++E + + +KD
Sbjct: 94 FQT----PNPFLMSIYDNISY------GPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDK 143
Query: 992 LVGIPGVNGLSTE--QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT 1049
L N LS Q++RL IA L P++I MDEPT+ LD + + + N+ +
Sbjct: 144 L----NTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKES 199
Query: 1050 GRTIVCT 1056
I+ T
Sbjct: 200 YTIIIVT 206
|
Length = 254 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 3e-06
Identities = 61/267 (22%), Positives = 102/267 (38%), Gaps = 52/267 (19%)
Query: 839 RMVLPFEP---------LTVAFQDLKYYVDTPLEMRE--RGFADRKLR----LLYDVTGS 883
RMV E + D+K P E ++ F R+ +L ++
Sbjct: 349 RMVEKLEGPIKFKNVTKTFASELDIKG---LPNEFQDILESFGVRQRVIERYVLRNLNLE 405
Query: 884 LRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTD 943
++PG + A++G SGAGKTTL+ ++ G K G K + +V
Sbjct: 406 IKPGDVVAVVGQSGAGKTTLLRMIL---------GAQKGRGEEKYRPDSGKVEVPKNTVS 456
Query: 944 IHSPNITVEESVIFSAWLRLAPEINSKTKAEFV-------NEVLETIELDAIKDSLVGIP 996
P PE T E + N +E + + D+++
Sbjct: 457 ALIPGE-------------YEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRR 503
Query: 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVC 1055
+ LST Q++R +A L P+++ +DE LD A V R + + G T++
Sbjct: 504 KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIV 563
Query: 1056 TIHQPSIDIFEAF--DELILLKTGGRI 1080
H+P ++ A D LIL+ G
Sbjct: 564 VTHRP--EVGNALRPDTLILVGYGKVP 588
|
Length = 593 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 56/239 (23%), Positives = 100/239 (41%), Gaps = 62/239 (25%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIKISGYPK 927
++L+D+ + +TA +G SG GK+T + D + K V+GE+ I G
Sbjct: 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDG--- 71
Query: 928 VQETFARVSGYCEQTDIHSPNITV-----EESVIF--------SAWLRLA--PEI----- 967
D++S + V + ++F S + +A P++
Sbjct: 72 --------------IDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAK 117
Query: 968 NSKTKAEFVNEVLETIEL-----DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 1022
N K E V + L ++ L D +KDS LS Q++RL IA + P+++
Sbjct: 118 NKKKLDEIVEKSLTSVGLWEELGDRLKDSAFE------LSGGQQQRLCIARAIAVKPTML 171
Query: 1023 FMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081
MDEP + LD A ++ ++ + TI+ H S+ + + + GRI+
Sbjct: 172 LMDEPCSALDPVATNVIENLIQEL-KKNFTIIVVTH--SMKQAKKVSDRVAFFQSGRIV 227
|
Length = 251 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 34/158 (21%)
Query: 889 LTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHS-- 946
LT L+G SG GKTT++ ++AG +T G I + G + V E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 947 ------PNITVEESVIFSAWLRL----APEINSKTKAEFVNEVLETIELDAIKDSLVGIP 996
P++TV E+V F LR+ A EI + V E L ++L+
Sbjct: 93 QSYALFPHMTVFENVAFG--LRMQKTPAAEITPR-----VMEALRMVQLEEFAQR----- 140
Query: 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
+ LS Q++R+ IA +V P ++ +DE + LD +
Sbjct: 141 KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 46/216 (21%), Positives = 84/216 (38%), Gaps = 63/216 (29%)
Query: 887 GVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHS 946
VL + GVSG+GK+TL+ Y G+ ++ + F+R
Sbjct: 21 NVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLP---KFSR------------ 59
Query: 947 PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQR 1006
+IF L+ ++ L + L ++ LS +
Sbjct: 60 ------NKLIFIDQLQFLIDVG-----------LGYLTLGQK---------LSTLSGGEL 93
Query: 1007 KRLTIAVELVANP--SIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDI 1064
+R+ +A EL + P ++ +DEP+TGL + ++ +K +++ G T++ H +
Sbjct: 94 QRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-- 151
Query: 1065 FEAFDELILLKTGGRIIYCGP-LGKHSSQVIEYFEG 1099
L + II GP GK +V+ F G
Sbjct: 152 ---------LSSADWIIDFGPGSGKSGGKVV--FSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-06
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM 1040
G LS QR+RL IA LV P I+ DE T+ LD R AIV
Sbjct: 585 GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-06
Identities = 62/264 (23%), Positives = 100/264 (37%), Gaps = 71/264 (26%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L+ V ++ G + L+GP G GK+T L+A++G L P+ G V
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTV-------------- 60
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
+A V SAR SRR VP DT +
Sbjct: 61 ----------LVAGDDVEAL---SAR------------AASRR---VASVPQ---DTSLS 89
Query: 306 -AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG------------ISGGQKKRLT 352
V+ V +T + + V AM R +SGG+++R+
Sbjct: 90 FEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVL 149
Query: 353 TGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLF- 411
+ T L +DE T LD + + + +++LV TA+ A DL
Sbjct: 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAV-----AAIHDLDLAA 203
Query: 412 ---DDIILMAEGKIVYHGPQDHVL 432
D+++L+A+G++ GP VL
Sbjct: 204 RYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 34/165 (20%), Positives = 53/165 (32%), Gaps = 50/165 (30%)
Query: 211 STFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTS----AYISQNDLHIAEMTVRETV 266
ST LK ++G L P+ +G + +G K + Q+ E+TVRE +
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 267 DFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILG 326
F R +E L+ +G
Sbjct: 58 FFGLR------DKEADARAEE---------------------------------ALERVG 78
Query: 327 LDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITN 371
L D + SGGQK+R+ ++ K L +DE T
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 60/207 (28%)
Query: 198 RMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDL 255
R+T L+GP GCGKST L+ + +L P ++TG++ YNG ++
Sbjct: 33 RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG-----------------ENI 75
Query: 256 HIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAI-------- 307
+ V V R + M R P+P + K+I
Sbjct: 76 MDSGADV------------VALRRKIGMVFQR--------PNP----FPKSIYENVAYGP 111
Query: 308 SVKGVKRTLQTDYI----LKILGL-DVCADTMVGNAMRRGISGGQKKRLTTGEMI-VGPT 361
+ G K D I LK L D D + +A+ +SGGQ++RL + V P
Sbjct: 112 RIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSAL--SLSGGQQQRLCIARTLAVNP- 168
Query: 362 KALFMDEITNGLDSSTAYQIIACIQQL 388
+ + MDE + LD +I I+ L
Sbjct: 169 EVILMDEPCSALDPIATAKIEDLIEDL 195
|
Length = 253 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 46/228 (20%)
Query: 197 GRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK--TSAYISQND 254
G + ++GP G GKST L ++G ++P +G + N P + S +N+
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80
Query: 255 LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKR 314
L A +TVR+ + G+G + ++EK I Y+ +
Sbjct: 81 L-FAHLTVRQNI-------GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP------ 126
Query: 315 TLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLD 374
+SGGQ++R+ +V P L +DE + LD
Sbjct: 127 --------------------------EQLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160
Query: 375 SSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422
+++A ++QL T L+ + + + I ++++GKI
Sbjct: 161 PLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-06
Identities = 58/259 (22%), Positives = 102/259 (39%), Gaps = 69/259 (26%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
KS + K +++++ + G LLGP GCGK+T L+ ++G P +G + +G
Sbjct: 21 SKSFDGKE-VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQ 76
Query: 237 KLEEFVPPKTSAYISQNDLHIA--------EMTVRETVDFSARCQGVGSREETMMEVSRR 288
+ VP + ++ MTV E V F R Q + E++ R
Sbjct: 77 DITH-VPAE------NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA-----EITPR 124
Query: 289 EKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR--GISGG 346
EA L+++ L+ A R+ +SGG
Sbjct: 125 VMEA-----------------------------LRMVQLEEFAQ-------RKPHQLSGG 148
Query: 347 QKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQL---VHITDSTALISLLQP 403
Q++R+ +V K L +DE + LD Q+ ++ L + IT + +
Sbjct: 149 QQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGIT----FVFVTHD 204
Query: 404 APETFDLFDDIILMAEGKI 422
E + D I++M +G+I
Sbjct: 205 QEEALTMSDRIVVMRDGRI 223
|
Length = 375 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP------K 927
+L +V+ SL+ G AL+G SG GK+TL +L G ++ +G + G P
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLAKLNRA 82
Query: 928 VQETFARVSGYCEQTDIHS--PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 985
++ F R Q I + P TV E I LR ++ + +E+L ++L
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRKTVRE--IIREPLRHLLSLDKAERLARASEMLRAVDL 140
Query: 986 DA-IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
D + D P LS Q +R+ +A L P ++ +DE + LD
Sbjct: 141 DDSVLDKR---PP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 38/224 (16%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFA 933
L +V+ + G A++G +G+GK+T+ +L G + SG EIKI G +E
Sbjct: 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITISKENLK 79
Query: 934 RVSGYCEQTDI----HSPN-----ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 984
+ + I +P+ TVE+ + F + P K + + + + +
Sbjct: 80 EI-----RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMED 134
Query: 985 -LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
LD K+ LS Q++R+ IA L NP II DE T+ LD + + + +
Sbjct: 135 YLD--KEPQ-------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM 185
Query: 1044 KNIVNTG-RTIVCTIHQPSIDIFEAF--DELILLKTGGRIIYCG 1084
++ T +T++ H D+ EA D++I+ G++I G
Sbjct: 186 VDLRKTRKKTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 4e-06
Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 34/177 (19%)
Query: 882 GSLRPG-VLTALMGVSGAGKTTLMDVLAGR--KTSGYVEGEIKISGYPKVQETFARVSGY 938
G + G V+ + G +G GKTT +LAG G V+ E+KIS Y K Q G
Sbjct: 360 GEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQYIKPDYDG- 415
Query: 939 CEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVN-EVLETIELDAIKDSLVGIPG 997
TVE+ LR I + + E+++ ++L+ + D V
Sbjct: 416 -----------TVED------LLR---SITDDLGSSYYKSEIIKPLQLERLLDKNV---- 451
Query: 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV-NTGRTI 1053
LS + +R+ IA L + + +DEP+ LD V +A++ I T
Sbjct: 452 -KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA 507
|
Length = 590 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-06
Identities = 60/251 (23%), Positives = 100/251 (39%), Gaps = 47/251 (18%)
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE 240
++K LN +S + G T L+G G GKST K ++G L P +++ +G L
Sbjct: 17 DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTA 76
Query: 241 F----VPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVP 296
+ K D TV + V F + V R E
Sbjct: 77 KTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRPE---------------- 119
Query: 297 DPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLT-TGE 355
M I + DYI ++ +SGGQK+R+ G
Sbjct: 120 -------MIKIVRDVLADVGMLDYI---------------DSEPANLSGGQKQRVAIAGI 157
Query: 356 MIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415
+ V P K + +DE T+ LD + QI+ I++L + T +IS+ E ++ D ++
Sbjct: 158 LAVEP-KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLT-VISITHDIDEA-NMADQVL 214
Query: 416 LMAEGKIVYHG 426
++ +GK++ G
Sbjct: 215 VLDDGKLLAQG 225
|
Length = 282 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 5e-06
Identities = 46/214 (21%), Positives = 83/214 (38%), Gaps = 48/214 (22%)
Query: 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKLEEFV 242
+IL +V+ + +T L+GP GCGKSTF++ L+ +L P + G + +G
Sbjct: 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVD----- 71
Query: 243 PPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
I + + E+ + + F ++ P D
Sbjct: 72 -------IYDPAVDVVELRKKVGMVF---------------------QKPNPFPKSIFDN 103
Query: 303 YMKAISVKGVKRTLQTDYILKILG--------LDVCADTMVGNAMRRGISGGQKKRLTTG 354
+ + G D+I + + D D + +A+ G+SGGQ++RL
Sbjct: 104 VAYGLRIHGED---DEDFIEERVEESLKAAALWDEVKDKLDKSAL--GLSGGQQQRLCIA 158
Query: 355 EMIVGPTKALFMDEITNGLDSSTAYQIIACIQQL 388
I + + MDE + LD + +I I +L
Sbjct: 159 RTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL 192
|
Length = 250 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG 235
+L ++S LK G LLG G GKST L+ L+G+L P GE++ +G
Sbjct: 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ---GEITLDG 63
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 29/166 (17%)
Query: 869 FADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYP 926
F R R+L DV+ L+PG + L+G +GAGK+TL+ V+ G G ++ K+
Sbjct: 14 FGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL---- 67
Query: 927 KVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD 986
R+ GY Q ++ + T+ +V + +LRL P TK E + L+ ++
Sbjct: 68 -------RI-GYVPQK-LYL-DTTLPLTV--NRFLRLRP----GTKKEDILPALKRVQ-- 109
Query: 987 AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
L+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 110 --AGHLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-06
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT 1049
D+ VG G+ LS +++R+ IA ++ NP I+ +DE T+ LD + A++ V+
Sbjct: 390 DTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALR-EVSA 447
Query: 1050 GRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081
GRT + H+ S I +A DE+I+L GRI+
Sbjct: 448 GRTTLVIAHRLST-IIDA-DEIIVLDN-GRIV 476
|
Length = 497 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 5e-06
Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 34/223 (15%)
Query: 869 FADRKLRL-LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYV--EGEIKISGY 925
FA R L L ++ S+ AL+G +G+GK+TL +L G Y EGEI++ G
Sbjct: 348 FAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY----YPLTEGEIRLDGR 403
Query: 926 PKVQETFARVSGYCEQTDIHSPNITVEESVI----FSAWLRLAPEINSKTKAEFVNEVLE 981
P +S + ++ V+ F A + L +I+ E V + LE
Sbjct: 404 P--------LSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISE----EQVWQALE 451
Query: 982 TIELDAIKDSL-------VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
T++L + SL +G G N LS Q++ L +A LV P I+ +DE T +D+
Sbjct: 452 TVQLAELARSLPDGLYTPLGEQG-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510
Query: 1035 AAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077
+ +A+ V T+V H+ S I EA D +++L G
Sbjct: 511 TEQAIQQALA-AVREHTTLVVIAHRLST-IVEA-DTILVLHRG 550
|
Length = 592 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-06
Identities = 54/190 (28%), Positives = 83/190 (43%), Gaps = 39/190 (20%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L D++ S PG ++G++GAGK+TL+ ++AG GE + + KV
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAPGIKV------- 70
Query: 936 SGYCEQTDIHSPNITVEESV------IFSAWLRLAPEINSK---TKAEFVNEVLETIELD 986
GY Q P TV E+V I A R EI++K A+ + E EL
Sbjct: 71 -GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFN-EISAKFAEPDADMDALLAEQAELQ 128
Query: 987 AIKDSLVG----------------IPG---VNGLSTEQRKRLTIAVELVANPSIIFMDEP 1027
I D+ P V LS +R+R+ + L++ P ++ +DEP
Sbjct: 129 EIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
Query: 1028 TTGLDARAAA 1037
T LDA + A
Sbjct: 189 TNHLDAESVA 198
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-06
Identities = 57/215 (26%), Positives = 104/215 (48%), Gaps = 26/215 (12%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY--VEGEIKISGY-------PK 927
L ++ + G AL+G SG+GK+T+ ++L T Y EGEI + G+
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 928 VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPE-INSKTKAEFVNEVLETIELD 986
++ A VS ++H N T+ ++ ++ + + E I + + + + ++D
Sbjct: 415 LRNQVALVS-----QNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFIN--KMD 467
Query: 987 AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046
D+++G GV LS QR+R+ IA L+ + I+ +DE T+ LD + + A+ +
Sbjct: 468 NGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DE 525
Query: 1047 VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081
+ RT + H+ S E DE IL+ G I+
Sbjct: 526 LQKNRTSLVIAHRLS--TIEKADE-ILVVEDGEIV 557
|
Length = 582 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 6e-06
Identities = 56/204 (27%), Positives = 88/204 (43%), Gaps = 28/204 (13%)
Query: 869 FADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIK 921
+ +R +L+D+ ++ +TA +G SG GK+T + D++ G EGEI
Sbjct: 90 YMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH----EGEIY 145
Query: 922 ISGYPKVQETFARVSGYCEQTDI----HSPNITVEESVIFSAWLRLAPEINS----KTKA 973
G ++S +T I P T E IF + P N K
Sbjct: 146 FLG---TNTRSKKISSLELRTRIGMVFQKP--TPFEMSIFDN-VAYGPRNNGINDRKILE 199
Query: 974 EFVNEVLETIEL-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
+ V + L++ L D +KD L N LS Q++RL IA + P ++ MDEPT+ LD
Sbjct: 200 KIVEKSLKSAALWDEVKDDL--DKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALD 257
Query: 1033 ARAAAIVMRAVKNIVNTGRTIVCT 1056
A A + + + I+ T
Sbjct: 258 PIATAKIEELILELKKKYSIIIVT 281
|
Length = 329 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 6e-06
Identities = 52/218 (23%), Positives = 89/218 (40%), Gaps = 38/218 (17%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKLEEFVP 243
IL VS + ++T ++GP GCGKSTFLK L+ L+ ++V G V + + E
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYE--- 78
Query: 244 PKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTY 303
++ N L +VS + + P D
Sbjct: 79 ----RRVNLNRLR--------------------------RQVSMVHPKPNLFPMSVYDNV 108
Query: 304 MKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG---ISGGQKKRLTTGEMIVGP 360
+ + G + L+ D I++ D + + + + +SGGQ++RL +
Sbjct: 109 AYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVK 168
Query: 361 TKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI 398
K L MDE GLD + ++ + IQ L ++ T +I
Sbjct: 169 PKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVI 206
|
Length = 261 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 55/208 (26%), Positives = 83/208 (39%), Gaps = 49/208 (23%)
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE 240
E +++IL V ++K G L+G G GKST L L+G D S +GEVS G L +
Sbjct: 20 EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQ 76
Query: 241 F-------VPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAG 293
+ K ++ Q+ + I + E V+ A +G SR+ SR +A
Sbjct: 77 MDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQ------SRNGAKA- 129
Query: 294 IVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTT 353
+L+ LGL D + +SGG+++R+
Sbjct: 130 ---------------------------LLEQLGLGKRLDHLPAQ-----LSGGEQQRVAL 157
Query: 354 GEMIVGPTKALFMDEITNGLDSSTAYQI 381
G LF DE T LD T +I
Sbjct: 158 ARAFNGRPDVLFADEPTGNLDRQTGDKI 185
|
Length = 228 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 7e-06
Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 13/175 (7%)
Query: 884 LRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTD 943
+ G + G +GAGKTTL+ VLAG G+I+I G + +R Y
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLP 91
Query: 944 IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLST 1003
+++ E++ F L + + + L + L +D+L V LS
Sbjct: 92 GLKADLSTLENLHFLCGL------HGRRAKQMPGSALAIVGLAGYEDTL-----VRQLSA 140
Query: 1004 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIH 1058
Q+KRL +A ++ + +DEP LD +V R + + G + T H
Sbjct: 141 GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-06
Identities = 55/251 (21%), Positives = 99/251 (39%), Gaps = 49/251 (19%)
Query: 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP 244
IL +S + PG ++GP G GK+T L L+G PS +G+V+ G F
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLG---RRFGKG 98
Query: 245 KTSAYISQN------DLHI---AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIV 295
+T + + +LH TVR+ V S +G +E +++ + A
Sbjct: 99 ETIFELRKRIGLVSSELHERFRVRETVRDVV-LSGFFASIGIYQE---DLTAEDLAAAQ- 153
Query: 296 PDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGE 355
+ + A + R + +S G+++R+
Sbjct: 154 ---WLLELLGAKHLAD--RPFGS------------------------LSQGEQRRVLIAR 184
Query: 356 MIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415
+V + L +DE GLD Q++ +++L + AL+ + A E F +
Sbjct: 185 ALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244
Query: 416 LMAEGKIVYHG 426
L+ EG++V G
Sbjct: 245 LLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 8e-06
Identities = 64/262 (24%), Positives = 105/262 (40%), Gaps = 78/262 (29%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L+ VS ++PG + LLG G GKST +K LSG P +GE+ +G K F P+
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDG-KPVAFSSPRD 79
Query: 247 S-----AYISQNDLHIA-EMTVRETV---DFSARCQGVGSREETMMEVSRREKEAGIVPD 297
+ A + Q +L + ++V E + R G+ R+ M +R
Sbjct: 80 ALAAGIATVHQ-ELSLVPNLSVAENIFLGREPTRRFGLIDRKA-MRRRARE--------- 128
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQK------KRL 351
+L LGLD+ DT+VG+ +S Q+ + L
Sbjct: 129 -----------------------LLARLGLDIDPDTLVGD-----LSIAQRQMVEIARAL 160
Query: 352 TTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQL----VHITDSTALIS--LLQPAP 405
+ + L +DE T L ++ I++L V + IS L
Sbjct: 161 SFD------ARVLILDEPTAALTVKETERLFDLIRRLKAQGV----AIIYISHRL----D 206
Query: 406 ETFDLFDDIILMAEGKIVYHGP 427
E F++ D I ++ +G++V P
Sbjct: 207 EVFEIADRITVLRDGRVVGTRP 228
|
Length = 500 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 8e-06
Identities = 51/254 (20%), Positives = 105/254 (41%), Gaps = 45/254 (17%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD--PSLKVTGEVSYNGY-----KL 238
+ +V+ + ++T ++GP GCGK+T L++++ D P +V G++ + G +L
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77
Query: 239 EEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDP 298
+ K + Q M++ + V F R GV S+ + V K+A + +
Sbjct: 78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDE- 135
Query: 299 DIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIV 358
VK L N +SGGQ++RL +
Sbjct: 136 -------------VKSEL--------------------NKPGTRLSGGQQQRLCIARALA 162
Query: 359 GPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418
+ + +DE T+ LD +I +++L +++ ++ + + + D I M
Sbjct: 163 VEPEVILLDEPTSALDPIATQRIEKLLEEL---SENYTIVIVTHNIGQAIRIADYIAFMY 219
Query: 419 EGKIVYHGPQDHVL 432
G+++ +GP ++
Sbjct: 220 RGELIEYGPTREIV 233
|
Length = 250 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 8e-06
Identities = 54/238 (22%), Positives = 89/238 (37%), Gaps = 82/238 (34%)
Query: 198 RMTLLLGPPGCGKSTFLKAL---SGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQND 254
++T L+GP G GKST+L++L + +D + +VTG++ Y G I++ +
Sbjct: 47 KITALIGPSGSGKSTYLRSLNRMNDTIDIA-RVTGQILYRGID------------INRKE 93
Query: 255 LHIAEM----------------TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDP 298
+++ EM ++ E + F+ GV ++ V K+A +
Sbjct: 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAAL---- 149
Query: 299 DIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIV 358
D D + +A+ +SGGQ++RL I
Sbjct: 150 ----------------------------WDQVKDDLHKSAL--TLSGGQQQRLCIARAIA 179
Query: 359 GPTKALFMDEITNGLDS-STA------------YQIIAC---IQQLVHITDSTALISL 400
L MDE + LD ST Y II +QQ +D TA L
Sbjct: 180 VKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYL 237
|
Length = 267 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 8e-06
Identities = 58/218 (26%), Positives = 96/218 (44%), Gaps = 38/218 (17%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGR--KTSGYVEGEIKISGYPKVQETFA 933
LL DV+ S+ G LT ++G +G+GK+TL+ L + + G V E I+ P
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVP------- 727
Query: 934 RVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL- 992
+Q I N TV +++F E A + + + +L+A L
Sbjct: 728 ------QQAWIM--NATVRGNILF-----FDEE-----DAARLADAVRVSQLEADLAQLG 769
Query: 993 ------VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046
+G GVN LS Q+ R+++A + AN + +D+P + LDA V+
Sbjct: 770 GGLETEIGEKGVN-LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG 828
Query: 1047 VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
G+T V HQ + + D ++ L GR+ + G
Sbjct: 829 ALAGKTRVLATHQ--VHVVPRADYVVALG-DGRVEFSG 863
|
Length = 1560 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 9e-06
Identities = 65/292 (22%), Positives = 114/292 (39%), Gaps = 47/292 (16%)
Query: 791 LKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKESYKGRMVLPFE----- 845
L+ G++ V ISH KLA+++ D R T M + S MV
Sbjct: 191 LRKEGTAIVYISH-KLAEIRRICD-----------RYTVMKDGSSVCSGMVSDVSNDDIV 238
Query: 846 ------PLTVAFQDLKYYVDTPLE---MRERGFADRKLRLLYDVTGSLRPGVLTALMGVS 896
L F +K V R R + + D++ S+ G + G+
Sbjct: 239 RLMVGRELQNRFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLV 298
Query: 897 GAGKTTLMDVLAGRKTSGYVEGEIKISG--------YPKVQETFA------RVSGYCEQT 942
G+G+T LM+ L G GEI+++G V++ A R +G+
Sbjct: 299 GSGRTELMNCLFG--VDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF 356
Query: 943 DIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLS 1002
I + N+ + S+ + + + EL A+K V + LS
Sbjct: 357 SI-AQNMAISRSLKDGGYKGAMGLFHEVDEQRTAEN---QRELLALKCHSVN-QNITELS 411
Query: 1003 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIV 1054
++++ I+ L P +I DEPT G+D A A + + ++ + + G+ I+
Sbjct: 412 GGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 58/272 (21%), Positives = 105/272 (38%), Gaps = 69/272 (25%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L +VS ++ G LLG GCGKST + L G P+ G VS+ G L + +
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQ 82
Query: 246 TSAYISQNDLHI----------AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIV 295
A+ + D+ + MTVR+ + G R T ++ S ++
Sbjct: 83 RRAF--RRDVQLVFQDSPSAVNPRMTVRQII-------GEPLRHLTSLDESEQKA----- 128
Query: 296 PDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGE 355
+ +L ++GL ++ + + R +SGGQ +R+
Sbjct: 129 ---------------------RIAELLDMVGLR--SEDA--DKLPRQLSGGQLQRINIAR 163
Query: 356 MIVGPTKALFMDEITNGLDSSTAYQIIACIQQL--------VHITDSTALISLLQPAPET 407
+ K + +DE + LD I+ +++L + IT + L+Q
Sbjct: 164 ALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD---LRLVQ----- 215
Query: 408 FDLFDDIILMAEGKIVYHGPQDHVLAFFEDCG 439
+ +M +G+IV +L+F G
Sbjct: 216 -SFCQRVAVMDKGQIVEECDVAQLLSFKHPAG 246
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 182 AKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF 241
++++S + PG + LLGP G GK+T + + G L+P+ GE+++NG L +
Sbjct: 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQE 69
Query: 242 VPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSRE 279
+ + + L+ +MTV + + + A +G+ E
Sbjct: 70 IKNRIGYLPEERGLY-PKMTVEDQLKYLAELKGMPKAE 106
|
Length = 300 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 55/203 (27%), Positives = 78/203 (38%), Gaps = 53/203 (26%)
Query: 178 KSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYK 237
KS K ++N +S + G LLGP G GKST + + G P G+++
Sbjct: 49 KSYGDKA-VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITV---- 100
Query: 238 LEEFVPPKTSA------YISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKE 291
L VP + + Q D E TVRE + R G +S RE E
Sbjct: 101 LGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG----------MSTREIE 150
Query: 292 AGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRL 351
A I +L+ L+ AD V + +SGG K+RL
Sbjct: 151 AVIPS------------------------LLEFARLESKADARVSD-----LSGGMKRRL 181
Query: 352 TTGEMIVGPTKALFMDEITNGLD 374
T ++ + L +DE T GLD
Sbjct: 182 TLARALINDPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 1e-05
Identities = 57/203 (28%), Positives = 80/203 (39%), Gaps = 53/203 (26%)
Query: 178 KSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYK 237
KS K+ ++N +S + G LLGP G GKST + L G + P G+++
Sbjct: 12 KSYGDKV-VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV---- 63
Query: 238 LEEFVPPKTSA------YISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKE 291
L E VP + + Q D E TVRE + R G+ S RE E
Sbjct: 64 LGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM----------STREIE 113
Query: 292 AGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRL 351
A I +L+ L+ AD V +SGG K+RL
Sbjct: 114 AVIPS------------------------LLEFARLESKADVRVAL-----LSGGMKRRL 144
Query: 352 TTGEMIVGPTKALFMDEITNGLD 374
T ++ + L +DE T GLD
Sbjct: 145 TLARALINDPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 50/202 (24%), Positives = 74/202 (36%), Gaps = 48/202 (23%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKL----EEF 241
L VS + G L GP G GKST LK + G P+ G++ NG+ L
Sbjct: 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGRE 73
Query: 242 VP--PKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPD 299
+P + + Q+ + + TV E V R G R E+ RR E
Sbjct: 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR-----EIRRRVSEV------- 121
Query: 300 IDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVG 359
L ++GL A+ +SGG+++R+ IV
Sbjct: 122 ----------------------LDLVGL---KHKA--RALPSQLSGGEQQRVAIARAIVN 154
Query: 360 PTKALFMDEITNGLDSSTAYQI 381
L DE T LD +++I
Sbjct: 155 QPAVLLADEPTGNLDPDLSWEI 176
|
Length = 223 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 67/284 (23%), Positives = 110/284 (38%), Gaps = 78/284 (27%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
+N+++ + G +L+GP G GK+T +K ++ ++P+ +GE+ +G + E P +
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73
Query: 247 S---AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTY 303
Y+ Q MTV E + +VP
Sbjct: 74 RRKIGYVIQQIGLFPHMTVEENI--------------------------ALVP------- 100
Query: 304 MKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR---GISGGQKKRLTTGEMIVGP 360
K + K + D +L ++GLD R +SGGQ++R VG
Sbjct: 101 -KLLKWPKEKIRERADELLALVGLDP------AEFADRYPHELSGGQQQR-------VGV 146
Query: 361 TKAL-------FMDEITNGLDSSTAYQI---IACIQQLVHITDSTALISLLQPAPETFDL 410
+AL MDE LD T Q+ +QQ + T ++ + E F L
Sbjct: 147 ARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKT----IVFVTHDIDEAFRL 202
Query: 411 FDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQE 454
D I +M G+IV G D +L R P V++F+
Sbjct: 203 ADRIAIMKNGEIVQVGTPDEIL--------RSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 61/249 (24%), Positives = 100/249 (40%), Gaps = 51/249 (20%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
L+ VS +K G LLGP GCGK+T L+ ++G P+ +GE+ +G + P K
Sbjct: 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHK 71
Query: 246 -TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
+ QN +TV E + F R + + E+ R EA
Sbjct: 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKA-----EIKERVAEA------------ 114
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKAL 364
L ++ L+ A+ +SGGQ++R+ +V K L
Sbjct: 115 -----------------LDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVL 152
Query: 365 FMDEITNGLDSS--TAYQI-IACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421
+DE LD Q+ + +Q+ + IT + + E + D I +M +GK
Sbjct: 153 LLDEPLGALDLKLRKDMQLELKRLQKELGIT----FVFVTHDQEEALTMSDRIAVMNKGK 208
Query: 422 IVYHG-PQD 429
I G P++
Sbjct: 209 IQQIGTPEE 217
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 60/248 (24%), Positives = 97/248 (39%), Gaps = 49/248 (19%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L V+ + PG + LLG G GKST +K LSG +P+ G ++ N + + K
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNK-LDHKL 76
Query: 247 SA-----YISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRR--EKEAGIVPDPD 299
+A I Q I E+TV E + + R +K G+
Sbjct: 77 AAQLGIGIIYQELSVIDELTVLEN-----------------LYIGRHLTKKVCGV---NI 116
Query: 300 ID-TYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIV 358
ID M+ + +L +GL V D V N +S K+ L + ++
Sbjct: 117 IDWREMRV----------RAAMMLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLM 161
Query: 359 GPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418
K + MDE T+ L + + + QL + TA++ + E + D +M
Sbjct: 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLR--KEGTAIVYISHKLAEIRRICDRYTVMK 219
Query: 419 EGKIVYHG 426
+G V G
Sbjct: 220 DGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 60/233 (25%), Positives = 97/233 (41%), Gaps = 38/233 (16%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLA---GRKTSGYVEGEIKISGYPKVQET 931
L V+ + +TAL+G SG GK+T + L R + ++G +++ G Q+
Sbjct: 59 HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118
Query: 932 FARVS-----GYCEQTDIHSPN---ITVEESVIFSA----------WLRLAPEINSKTKA 973
V G Q SPN ++ E++ + RL + +
Sbjct: 119 VNLVELRKRVGMVFQ----SPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAED 174
Query: 974 EFVNEVLETIEL-DAIKDSLVGIPGVN--GLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1030
E V L L D + D L N GLS Q++RL IA L +P +I MDEP +
Sbjct: 175 ELVERSLRQAALWDEVNDRL----DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASA 230
Query: 1031 LDARAAAIVMRAVKNIVNTGRTIVCTIH--QPSIDIFEAFDELILLKTGGRII 1081
LD A + + ++ + T+V H Q + I D+ + TGG ++
Sbjct: 231 LDPIATSKIEDLIEELAEE-YTVVVVTHNMQQAARI---SDQTAVFLTGGELV 279
|
Length = 305 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 63/254 (24%), Positives = 100/254 (39%), Gaps = 68/254 (26%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKLEEFVPP 244
LN+++ + +T L+GP GCGKSTFL+ L+ +L +K+ G V Y G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKN------- 75
Query: 245 KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
I N+ I E+ + + F P+P + +
Sbjct: 76 -----IYSNNFDILELRRKIGMVFQT-------------------------PNPFLMSIY 105
Query: 305 KAIS----VKGVKRTLQTDYIL-----KILGLDVCADTMVGNAMRRGISGGQKKRLTTGE 355
IS + G K + D I+ K + D + NA+ +SGGQ++RL
Sbjct: 106 DNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNAL--SLSGGQQQRLCIAR 163
Query: 356 MIVGPTKALFMDEITNGLDSST-------------AYQIIAC---IQQLVHITDSTA--L 397
+ + MDE T+ LD + +Y II +QQ I+D TA L
Sbjct: 164 TLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFL 223
Query: 398 ISLLQPAPETFDLF 411
++ T +LF
Sbjct: 224 NGCIEEESSTDELF 237
|
Length = 254 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-05
Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 21/197 (10%)
Query: 883 SLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQT 942
+RPG + G SGAGKT+L+ LAG G G I P + Q
Sbjct: 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWG--SGRI---SMPADSALL-----FLPQR 464
Query: 943 DIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI-PGVNGL 1001
+ P T+ E++ + P + VL + L + + L L
Sbjct: 465 P-YLPQGTLREALCY-------PNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVL 516
Query: 1002 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPS 1061
S +++RL A L+ P +F+DE T+ LD + + +K + T++ H+P+
Sbjct: 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT 575
Query: 1062 IDIFEAFDELILLKTGG 1078
+ F + +L LL G
Sbjct: 576 LWNFHS-RQLELLDDAG 591
|
Length = 604 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 30/198 (15%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVE----GEIKISGY------- 925
L+D+T G L+G SGAGK++L+ VL +E G + I+G
Sbjct: 18 LFDITLDCPQGETLVLLGPSGAGKSSLLRVL------NLLEMPRSGTLNIAGNHFDFSKT 71
Query: 926 --PKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLA--PEINSKTKAEFVNEVLE 981
K R G Q P++TV++++I A R+ + + +AE ++LE
Sbjct: 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI-EAPCRVLGLSKDQALARAE---KLLE 127
Query: 982 TIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMR 1041
+ L D P LS Q++R+ IA L+ P ++ DEPT LD A ++
Sbjct: 128 RLRLKPYADRF---P--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
Query: 1042 AVKNIVNTGRTIVCTIHQ 1059
++ + TG T V H+
Sbjct: 183 IIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 858 VDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGR 910
+D +++R F K ++L ++ +TA++G SG GK+TL+ D+++G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 911 KTSGYV--EGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEIN 968
+ G V + E S V RV +Q + +I ++V F P +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIF--DNVAF------GPRML 112
Query: 969 SKTKAEFVNEVLE-----TIELDAIKDSL--VGIPGVNGLSTEQRKRLTIAVELVANPSI 1021
T ++EV+E D +KD+L G+ LS Q++RL IA L P +
Sbjct: 113 GTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAIEPEV 168
Query: 1022 IFMDEPTTGLD 1032
I MDEP + LD
Sbjct: 169 ILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 40/182 (21%), Positives = 77/182 (42%), Gaps = 16/182 (8%)
Query: 885 RPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDI 944
RPG + ++G +G GK+T + +LAG E + +V + F +
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE-DPPSWDEVIKRFRGTELQNYFKKL 156
Query: 945 HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPG------- 997
+ + V ++ L P++ V E+L+ ++ D +V G
Sbjct: 157 YEGELRA---VHKPQYVDLIPKVVKGK----VGELLKKVDERGKFDEVVERLGLENVLDR 209
Query: 998 -VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCT 1056
V+ LS + +R+ IA L+ + + F DEP++ LD R R ++ + G+ ++
Sbjct: 210 DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVV 269
Query: 1057 IH 1058
H
Sbjct: 270 EH 271
|
Length = 591 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 38/178 (21%)
Query: 882 GSLRPGVLTALMGVSGAGKTTLMDVLAGR-KTSGYVEGEIKISGYPKVQETFARVSGYCE 940
G + G + ++G +G GKTT + +LAG K E ++K+S Y K Q G
Sbjct: 362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVS-Y-KPQYISPDYDG--- 416
Query: 941 QTDIHSPNITVEESVIFSAWLRLAPEINSKTKAE-----FVNEVLETIELDAIKDSLVGI 995
TVE+ + S ++ F E+++ + L+ + + V
Sbjct: 417 ---------TVEDL------------LRSAIRSAFGSSYFKTEIVKPLNLEDLLERPV-- 453
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV-NTGRT 1052
+ LS + +R+ IA L + +DEP+ LD IV + ++ + N +T
Sbjct: 454 ---DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKT 508
|
Length = 591 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 64/260 (24%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
Y+ +EA L +S ++ G + +GP G GK+T LK LSG L P+ +GEV G
Sbjct: 31 YREVEA----LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAG- 82
Query: 237 KLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVP 296
VP K + + + V G + + ++
Sbjct: 83 ----LVPWK------RRKKFLRRIGVV-----------FGQKTQLWWDL----------- 110
Query: 297 DPDIDTY--MKAI-SVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTT 353
P ID++ + AI + + + D + ++L L+ DT V R +S GQ+ R
Sbjct: 111 -PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEI 164
Query: 354 GEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413
++ + LF+DE T GLD I +++ +T L++ + + D
Sbjct: 165 AAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT-------SHYM-KD 216
Query: 414 I-------ILMAEGKIVYHG 426
I +++ +G+++Y G
Sbjct: 217 IEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 47/191 (24%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF--VP 243
+ + +S L G + GP G GK+T L+ L+G L P GEV + G ++
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESY 73
Query: 244 PKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTY 303
+ Y+ E+T E + F R G G+ T+ E
Sbjct: 74 HQALLYLGHQPGIKTELTALENLHFWQRFHGSGN-AATIWEA------------------ 114
Query: 304 MKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKA 363
L +GL D VG +S GQ++R+ + + P
Sbjct: 115 ------------------LAQVGLAGLEDLPVGQ-----LSAGQQRRVALARLWLSPAPL 151
Query: 364 LFMDEITNGLD 374
+DE LD
Sbjct: 152 WILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 46/210 (21%), Positives = 77/210 (36%), Gaps = 62/210 (29%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
LN +S + PG + +L+GP G GK+T + ++G P GEV ++G
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDT--------- 68
Query: 247 SAYISQNDLH-IAEM---------------TVRETVDFSARCQGVGSREETMMEVSRREK 290
+++ H IA TVRE ++ + S ++ R E+
Sbjct: 69 --DLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELA--LNRDKSVFASLFARLRAEE 124
Query: 291 EAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKR 350
+ D +L +GL D + +S GQK+
Sbjct: 125 RR------------------------RIDELLATIGLGDERDRLAAL-----LSHGQKQW 155
Query: 351 LTTGEMIVGPTKALFMDEITNGL-DSSTAY 379
L G ++ K L +DE G+ D+ T
Sbjct: 156 LEIGMLLAQDPKLLLLDEPVAGMTDAETEK 185
|
Length = 249 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 62/259 (23%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L+ VS + G +T ++GP G GKST L +S L +GE++ +G +L +
Sbjct: 16 VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKE 72
Query: 246 TSAYIS---QNDLHIAEMTVRETVDFSAR---CQGVGSREETMMEVSRREKEAGIVPDPD 299
+ +S Q + + +TVR+ V F R QG R KE + +
Sbjct: 73 LAKKLSILKQENHINSRLTVRDLVGF-GRFPYSQG------------RLTKEDRRIINEA 119
Query: 300 IDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVG 359
I+ Y+ L Y+ D + G GQ++R ++
Sbjct: 120 IE-YLHL-------EDLSDRYL----------DELSG---------GQRQRAFIAMVLAQ 152
Query: 360 PTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL------FDD 413
T + +DE N LD + QI+ +++L T ++ L D+ D
Sbjct: 153 DTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-------HDINFASCYSDH 205
Query: 414 IILMAEGKIVYHGPQDHVL 432
I+ + GK+V G D ++
Sbjct: 206 IVALKNGKVVKQGSPDEII 224
|
Length = 252 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 62/249 (24%), Positives = 101/249 (40%), Gaps = 65/249 (26%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+N++S + + LLGP G GKST LK ++G L P+ +GE+ ++G+
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPW------- 64
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
++ DLH + ++ + + +RE ++V G +PD ID
Sbjct: 65 -----TRKDLH----KIGSLIESPPLYENLTAREN--LKV--HTTLLG-LPDSRIDE--- 107
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
+L I+ L S G K+RL ++ K L
Sbjct: 108 ---------------VLNIVDLTNTGKKKAKQ-----FSLGMKQRLGIAIALLNHPKLLI 147
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDS------TALIS--LLQPAPETFDLFDDIILM 417
+DE TNGLD IQ+L + S T ++S +L E L D I ++
Sbjct: 148 LDEPTNGLDPIG-------IQELRELIRSFPEQGITVILSSHILS---EVQQLADHIGII 197
Query: 418 AEGKIVYHG 426
+EG + Y G
Sbjct: 198 SEGVLGYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 65/249 (26%), Positives = 101/249 (40%), Gaps = 51/249 (20%)
Query: 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKL-EEFV 242
LN+++ I ++GP G GKST + +G L P+ +G V G + +E +
Sbjct: 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENI 73
Query: 243 PP--KTSAYISQN-DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPD 299
K + QN D I TV + + F +G EET V+ R A
Sbjct: 74 REVRKFVGLVFQNPDDQIFSPTVEQDIAFGP--INLGLDEET---VAHRVSSA------- 121
Query: 300 IDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVG 359
L +LGL+ D + + +SGG+KKR+ +I
Sbjct: 122 ----------------------LHMLGLEELRDRVPHH-----LSGGEKKRVAIAGVIAM 154
Query: 360 PTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISL--LQPAPETFDLFDDIILM 417
+ L +DE T GLD ++I + L T + S L PE + D I +M
Sbjct: 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPE---MADYIYVM 211
Query: 418 AEGKIVYHG 426
+G+IV +G
Sbjct: 212 DKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 43/209 (20%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-- 243
+L+ +S G++T L+G G GKST LK L + PS GE+ + LE +
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKA 82
Query: 244 -PKTSAYISQNDLHIAE-MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDID 301
+ AY+ Q L AE MTVRE V G P
Sbjct: 83 FARKVAYLPQQ-LPAAEGMTVRELV------------------------AIGRYP----- 112
Query: 302 TYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPT 361
+ A+ G + + + ++GL A +V + +SGG+++R ++ +
Sbjct: 113 -WHGALGRFGAADREKVEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDS 166
Query: 362 KALFMDEITNGLDSSTAYQIIACIQQLVH 390
+ L +DE T+ LD + ++A + +L
Sbjct: 167 RCLLLDEPTSALDIAHQVDVLALVHRLSQ 195
|
Length = 265 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 25/159 (15%)
Query: 883 SLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQT 942
+++ G + L+G SG GKTT++ ++AG + EG+I I G E S +Q
Sbjct: 28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG-----EDVTHRS--IQQR 78
Query: 943 DI----HS----PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVG 994
DI S P++++ E+V + L++ + + + + V E LE ++L +D V
Sbjct: 79 DICMVFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVDLAGFEDRYV- 134
Query: 995 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 1033
+ +S Q++R+ +A L+ P ++ DEP + LDA
Sbjct: 135 ----DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-05
Identities = 60/251 (23%), Positives = 101/251 (40%), Gaps = 47/251 (18%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L+ ++ ++PG L+GP G GKST + L DP +G + +G L + P +
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAEL 412
Query: 247 SAYIS--QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
A ++ D + +V E + + G + T EV + A
Sbjct: 413 RARMALVPQDPVLFAASVMENIRY-------GRPDATDEEVEAAARAA------------ 453
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI--SGGQKKRLTTGEMIVGPTK 362
I L DT +G RG+ SGGQ++R+ I+
Sbjct: 454 ------------HAHEF--ISALPEGYDTYLG---ERGVTLSGGQRQRIAIARAILKDAP 496
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422
L +DE T+ LD+ + + ++ L + T LI + A T D I++M +G+I
Sbjct: 497 ILLLDEATSALDAESEQLVQQALETL--MKGRTTLIIAHRLA--TVLKADRIVVMDQGRI 552
Query: 423 VYHGPQDHVLA 433
V G ++A
Sbjct: 553 VAQGTHAELIA 563
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 59/271 (21%), Positives = 100/271 (36%), Gaps = 65/271 (23%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
+ K+ L VS + G + ++G G GKST ++ ++G P+ +G V +G
Sbjct: 11 FGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGT 67
Query: 237 KLEEFVPPKTSA------YISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREK 290
L + I Q+ ++ TV E V GV E+ R
Sbjct: 68 DLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVP-----KAEIEERVL 122
Query: 291 EAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKR 350
E +L+++GL+ AD +SGGQK+R
Sbjct: 123 E-----------------------------LLELVGLEDKADAYPAQ-----LSGGQKQR 148
Query: 351 LTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQL--------VHITDSTALISLLQ 402
+ + K L DE T+ LD T I+A ++ + V IT ++
Sbjct: 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVK--- 205
Query: 403 PAPETFDLFDDIILMAEGKIVYHGPQDHVLA 433
+ D + +M +G++V G + V A
Sbjct: 206 ------RICDRVAVMEKGEVVEEGTVEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 41/207 (19%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFAR 934
++L V+ + +TA++G SG GK+T + L +E E+++ G +V+ F
Sbjct: 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL---NRMNELESEVRVEG--RVE--FFN 73
Query: 935 VSGYCEQTDIH-----------SPNI---TVEESVIFS----AW---LRLAPEINSKTK- 972
+ Y + +++ PN+ +V ++V + W L + + S K
Sbjct: 74 QNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKD 133
Query: 973 AEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
A+ +E+ I A+ LS Q++RL IA L P ++ MDEP GLD
Sbjct: 134 ADLWDEIKHKIHKSALD-----------LSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182
Query: 1033 ARAAAIVMRAVKNI-VNTGRTIVCTIH 1058
A+ V ++++ + + T+V H
Sbjct: 183 PIASMKVESLIQSLRLRSELTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIKISGYPK 927
R + D++ + +TAL+G SG GK+T + D++ ++ EGEI G
Sbjct: 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS----EGEILYEGLNI 90
Query: 928 VQETFARVSGYCEQTDI-HSPNITVEESVI--FSAWLRLAPEINSKTKAEFVNEVLETIE 984
+ V+ E + PN +S+ + L+ A E E V E L
Sbjct: 91 LDSNINVVNLRREIGMVFQKPN-PFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAA 149
Query: 985 L-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
L D +KD L LS Q++RL IA L P+++ +DEP + LD
Sbjct: 150 LWDEVKDRLHS--SALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 13/188 (6%)
Query: 884 LRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSG----YC 939
+RPG + A+MG +G+GK+TL LAGR+ G ++ G ++ + +G
Sbjct: 24 VRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMA 83
Query: 940 EQTDIHSPNIT----VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
Q + P ++ ++ ++ R ++ + + E + +++ D L
Sbjct: 84 FQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE--DLLT-- 139
Query: 996 PGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIV 1054
VN G S ++KR I V P + +DE +GLD A IV V ++ + R+ +
Sbjct: 140 RSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFI 199
Query: 1055 CTIHQPSI 1062
H I
Sbjct: 200 IVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 27/168 (16%)
Query: 882 GSLRPGVLTALMGVSGAGKTTLMDVLAGR-KTSGYVEGEIKISGYPKVQETFARVSGYCE 940
GS+ + ++G +G GKTT + +LAG K EG+I+I V Y
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIEL-DTV--------SYKP 67
Query: 941 QTDIHSPNITVEESVIFSAWLRLAPEINSK-TKAEFVNEVLETIELDAIKDSLVGIPGVN 999
Q TV + L+ T F E+ + ++++ I D V
Sbjct: 68 QYIKADYEGTVRD--------LLSSITKDFYTHPYFKTEIAKPLQIEQILDRE-----VP 114
Query: 1000 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047
LS + +R+ IA L + I +DEP+ LD + + ++
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFA 162
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 45/200 (22%), Positives = 97/200 (48%), Gaps = 24/200 (12%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVL--AGRKTSGYV-------------EGEI 920
+L V+ G + +++G SG+GK+T + + + + G + +G++
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 921 KISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAP-EINSKTKAEFVNEV 979
K++ +++ R++ + ++ S ++TV E+V+ AP ++ +K E
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWS-HMTVLENVM------EAPIQVLGLSKQEARERA 132
Query: 980 LETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1039
++ + I + G V+ LS Q++R++IA L P ++ DEPT+ LD V
Sbjct: 133 VKYLAKVGIDERAQGKYPVH-LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEV 191
Query: 1040 MRAVKNIVNTGRTIVCTIHQ 1059
+R ++ + G+T+V H+
Sbjct: 192 LRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 48/243 (19%), Positives = 94/243 (38%), Gaps = 56/243 (23%)
Query: 200 TLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE-----FVPPKTSA--YISQ 252
T + G G GK+T ++ ++G P GE+ NG L + F+PP+ Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82
Query: 253 NDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGV 312
++VR + + + +
Sbjct: 83 EARLFPHLSVRGNLRYGMK------------------------------------RARPS 106
Query: 313 KRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNG 372
+R + + ++++LG+ + G +SGG+K+R+ G ++ + L MDE
Sbjct: 107 ERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAA 161
Query: 373 LDSSTAYQIIACIQQLVHITDSTALISLL--QPAPETFDLFDDIILMAEGKIVYHGPQDH 430
LD Y+I+ +++L + L E L D ++++ +G++ GP
Sbjct: 162 LDDPRKYEILPYLERL---HAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAE 218
Query: 431 VLA 433
V A
Sbjct: 219 VWA 221
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-05
Identities = 64/266 (24%), Positives = 108/266 (40%), Gaps = 58/266 (21%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
++ +A L VS + G ++G G GKST K L+G L P G ++ G
Sbjct: 13 FRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGM 69
Query: 237 KL-EEFV--PPKTSAYISQN-DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEA 292
L EE V + + QN D TV++ V F GV REE M+E R +A
Sbjct: 70 VLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGV-PREE-MVE---RVDQA 124
Query: 293 GIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLT 352
+++ D++ + R +SGGQK+R+
Sbjct: 125 -------------------LRQVGMEDFLNR-------------EPHR--LSGGQKQRVA 150
Query: 353 TGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL-- 410
++ + +DE T+ LD +++ ++QL T ++S+ T DL
Sbjct: 151 IAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGIT-VLSI------THDLDE 203
Query: 411 ---FDDIILMAEGKIVYHGPQDHVLA 433
D +I+M +G+I+ G + +
Sbjct: 204 AAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 3e-05
Identities = 65/298 (21%), Positives = 111/298 (37%), Gaps = 101/298 (33%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L +S ++ G + +++GP G GKST L+ L+G LEE
Sbjct: 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG------------------LEEP---- 54
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD-----PD- 299
S I TVD G ++ + ++ G+V P
Sbjct: 55 DSGSI--------------TVD--------GEDVGDKKDILKLRRKVGMVFQQFNLFPHL 92
Query: 300 --IDTYMKA-ISVKGVKRTLQTDYILKILGLDVCADTMVG-----NAMRRGISGGQKKRL 351
++ A + VK + + + L++L VG +A +SGGQ++R
Sbjct: 93 TVLENVTLAPVKVKKLSKAEAREKALELL-------EKVGLADKADAYPAQLSGGQQQR- 144
Query: 352 TTGEMIVGPTKALFM-------DEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPA 404
V +AL M DE T+ LD +++ ++ L T +I
Sbjct: 145 ------VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIV----- 192
Query: 405 PETFDL-F-----DDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVL 456
T ++ F D +I M +GKI+ GP + F P+ + FL ++L
Sbjct: 193 --THEMGFAREVADRVIFMDQGKIIEEGPPEEF--------FDNPKSERTRQFLSKIL 240
|
Length = 240 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 50/237 (21%), Positives = 94/237 (39%), Gaps = 49/237 (20%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
L ++ L+ G + ++LGP GCGK+T L ++G + G ++ +G +E P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGA 70
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
+ QN+ + V++ V F + GV + R + A
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQ--------RLEIAH------------ 110
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR--GISGGQKKRLTTGEMIVGPTKA 363
+LK +GL+ G R +SGGQ++R+ + +
Sbjct: 111 --------------QMLKKVGLE-------GAEKRYIWQLSGGQRQRVGIARALAANPQL 149
Query: 364 LFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420
L +DE LD+ T Q+ + +L T L+ + E + +++L++ G
Sbjct: 150 LLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLL-ITHDIEEAVFMATELVLLSPG 205
|
Length = 255 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 4e-05
Identities = 62/250 (24%), Positives = 101/250 (40%), Gaps = 74/250 (29%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALSGNLDP---SLKVTGEVSYNGYKLEEFVPP---KTS 247
L G+ L+GP G GK++ L AL G L P SLK+ NG +L E P K
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKI------NGIELRELDPESWRKHL 425
Query: 248 AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAI 307
+++ QN + T+R+ V +PD
Sbjct: 426 SWVGQNP-QLPHGTLRDNVLLG---------------------------NPDA------- 450
Query: 308 SVKGVKRTLQTDYILKIL-----GLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK 362
S + +++ L+ ++ + L GLD T +G+ G+S GQ +RL ++ P +
Sbjct: 451 SDEQLQQALENAWVSEFLPLLPQGLD----TPIGDQAA-GLSVGQAQRLALARALLQPCQ 505
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI------SLLQPAPETFDLFDDIIL 416
L +DE T LD+ + ++ + T L+ L Q +D I +
Sbjct: 506 LLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQLEDLAQ--------WDQIWV 555
Query: 417 MAEGKIVYHG 426
M +G+IV G
Sbjct: 556 MQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 61/258 (23%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L++V+ ++ G L+G G GKST ++ L+G L P+ +G++ +G + T
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDI-------T 72
Query: 247 SAYISQNDL-------------HIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAG 293
+ +D+ + E T+ + + F G+ EE E+ R K A
Sbjct: 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLS--EE---EIENRVKRA- 126
Query: 294 IVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTT 353
+ I+GLD + + +SGGQK+R+
Sbjct: 127 ----------------------------MNIVGLDY--EDYKDKSPFE-LSGGQKRRVAI 155
Query: 354 GEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413
++ K L +DE T GLD +I+ I++L H + +I + + L D
Sbjct: 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL-HKEYNMTIILVSHSMEDVAKLADR 214
Query: 414 IILMAEGKIVYHGPQDHV 431
II+M +GK G V
Sbjct: 215 IIVMNKGKCELQGTPREV 232
|
Length = 287 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 46/173 (26%), Positives = 66/173 (38%), Gaps = 54/173 (31%)
Query: 889 LTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQ 941
+TAL+G SG+GK+T + D + + V G+I G
Sbjct: 48 ITALIGPSGSGKSTYLRSLNRMNDTIDIAR----VTGQILYRG----------------- 86
Query: 942 TDIHSPNITVEE---------------------SVIFSAWLRLAPEINSKTKAEFVNEVL 980
DI+ I V E ++ F+ L A + K E V L
Sbjct: 87 IDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFA--LERAGVKDKKVLDEIVETSL 144
Query: 981 ETIEL-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
+ L D +KD L LS Q++RL IA + P I+ MDEP + LD
Sbjct: 145 KQAALWDQVKDDLH--KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195
|
Length = 267 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 4e-05
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNG 235
+N +S ++ +T L+GP GCGKSTFL++++ +L PS + GE+ Y G
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87
|
Length = 268 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 4e-05
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 178 KSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDP 223
K+ K+ +L +S + PG L+G G GKST LK ++G L+P
Sbjct: 8 KTYGGKL-LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP 52
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 4e-05
Identities = 50/194 (25%), Positives = 80/194 (41%), Gaps = 52/194 (26%)
Query: 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP 244
++ S ++ G L+GP GCGK+T LK + G L +G + + G KLE
Sbjct: 333 QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRI-HCGTKLE----- 383
Query: 245 KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMME-VSRREKEAGIVPDPDIDTY 303
AY Q+ R +D E+T+M+ ++ ++E
Sbjct: 384 --VAYFDQH---------RAELD----------PEKTVMDNLAEGKQE------------ 410
Query: 304 MKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKA 363
+ V G R + Y+ L A T V + +SGG++ RL + + P+
Sbjct: 411 ---VMVNGRPRHV-LGYLQDFLFHPKRAMTPV-----KALSGGERNRLLLARLFLKPSNL 461
Query: 364 LFMDEITNGLDSST 377
L +DE TN LD T
Sbjct: 462 LILDEPTNDLDVET 475
|
Length = 635 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 50/213 (23%), Positives = 92/213 (43%), Gaps = 29/213 (13%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFAR 934
+L +V+ ++ G ++G +GAGK+TL +LA + EG+I+I G
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEAEEGKIEIDG--------ID 71
Query: 935 VSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVG 994
+S + S I ++ +FS +R + + E + L E
Sbjct: 72 ISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSE---------- 121
Query: 995 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIV 1054
G LS QR+ L +A L+ P ++ +DE T +D A++ + ++ T TI+
Sbjct: 122 --GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTIL 178
Query: 1055 CTIH--QPSIDIFEAFDELILLKTGGRIIYCGP 1085
H + ID +D+++++ G Y P
Sbjct: 179 TIAHRLRTIID----YDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 32/162 (19%)
Query: 889 LTALMGVSGAGKTT-------LMDVLAGRKTSG---YVEGEIKISGYPKVQETFARVSGY 938
+TA++G SG GK+T +++++ KT+G Y + I Y V+E V
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS-VEELRTNVGMV 110
Query: 939 CEQTDIHSPN---ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET-----IELDAIKD 990
++ PN ++ ++V + P+I+ + ++E++E D +KD
Sbjct: 111 FQK-----PNPFPKSIYDNVTY------GPKIHGIKDKKTLDEIVEKSLRGAAIWDELKD 159
Query: 991 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
L GLS Q++RL IA L P +I MDEPT+ LD
Sbjct: 160 RLH--DNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 58/196 (29%), Positives = 85/196 (43%), Gaps = 30/196 (15%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISG-----YPKVQET 931
L ++ +R G + L+G +GAGK+TL+ +AG G G I+ +G +
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPG--SGSIQFAGQPLEAWS--AAE 66
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFSAW-LRLAPEINSKTKAEFVNEVLETIELDAIKD 990
AR Y Q + V F L + ++ A +NEV E + LD D
Sbjct: 67 LARHRAYLSQQQTPPFAMPV-----FQYLTLHQPDKTRTEAVASALNEVAEALGLD---D 118
Query: 991 SLVGIPGVNGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTTGLDARAAAIVMRA 1042
L G VN LS E QR RL AV L NP+ ++ +DEP LD A + R
Sbjct: 119 KL-GRS-VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRL 175
Query: 1043 VKNIVNTGRTIVCTIH 1058
+ + G +V + H
Sbjct: 176 LSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 65/245 (26%), Positives = 107/245 (43%), Gaps = 33/245 (13%)
Query: 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLM---DVLAGRKTSGYVEGEIKISG---YPK 927
+ L DV+ + +TA++G SG GK+T + + + + VEGE+ G Y
Sbjct: 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111
Query: 928 VQETFA--RVSGYCEQTDIHSPN---ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET 982
+ A R G Q PN ++ ++V + L++ E V E L
Sbjct: 112 DVDPVALRRRIGMVFQK----PNPFPKSIYDNVAYG--LKIQGY--DGDIDERVEESLRR 163
Query: 983 IEL-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMR 1041
L D +KD L G++ LS Q++RL IA + +P +I MDEP + LD A + +
Sbjct: 164 AALWDEVKDQL-DSSGLD-LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIED 221
Query: 1042 AVKNIVNTGRTIVCTIH--QPSIDIFEAFDELILLKTGGRIIYCGPLGK-----HSSQVI 1094
++ + T+V H Q + I D+ + TGG ++ K S +V
Sbjct: 222 LIEELAEE-YTVVIVTHNMQQAARI---SDKTAVFLTGGELVEFDDTDKIFENPESQRVE 277
Query: 1095 EYFEG 1099
+Y G
Sbjct: 278 DYITG 282
|
Length = 285 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 1006 RKRLTIAVELVANPSIIFMDEPTTGLD 1032
++RL IA LV +P ++FMDEPT GLD
Sbjct: 157 QQRLQIARNLVTHPRLVFMDEPTGGLD 183
|
Length = 258 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 5e-05
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTAL-ISLL 401
+SGGQ++R+ ++ L +DE T+ LD T I+ ++ L T + I+
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIA-- 152
Query: 402 QPAPETFDLFDDIILMAEGK 421
T D II++ +G+
Sbjct: 153 -HRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 48/233 (20%)
Query: 197 GRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK---TSAYISQN 253
G +T ++GP G GKST L ++G P +G V NG + PP S +N
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVT-AAPPADRPVSMLFQEN 79
Query: 254 DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVK 313
+L A +TV + V G+ E R+ + + K +
Sbjct: 80 NL-FAHLTVEQNVGL-GLSPGLKLTAE------DRQAIEVALARVGLAGLEKRLP----- 126
Query: 314 RTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGL 373
+SGG+++R+ ++V L +DE L
Sbjct: 127 ---------------------------GELSGGERQRVALARVLVRDKPVLLLDEPFAAL 159
Query: 374 DSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHG 426
D + +++ + L T T L+ QP + L ++ + G+I G
Sbjct: 160 DPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 60/264 (22%), Positives = 109/264 (41%), Gaps = 58/264 (21%)
Query: 198 RMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKL-EEFVPP----KTSAYI 250
++T ++GP GCGKSTFL+ ++ +L + +V GE+++ G + + V P + +
Sbjct: 66 QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMV 125
Query: 251 SQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVK 310
Q + ++ + V + + QG D DID ++ S++
Sbjct: 126 FQKPNPFPK-SIYDNVAYGLKIQGY---------------------DGDIDERVEE-SLR 162
Query: 311 GVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEIT 370
+ L GLD +SGGQ++RL I + + MDE
Sbjct: 163 RAALWDEVKDQLDSSGLD--------------LSGGQQQRLCIARAIAPDPEVILMDEPA 208
Query: 371 NGLDSSTAYQIIACIQQLVHITDSTALISL--LQPAPETFDLFDDIILMAEGKIVYHGPQ 428
+ LD +I I++L + T +I +Q A D + + G++V
Sbjct: 209 SALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQAARISD--KTAVFLTGGELVEFDDT 264
Query: 429 DHVLAFFEDCGFRCPERKGVSDFL 452
D + FE+ PE + V D++
Sbjct: 265 DKI---FEN-----PESQRVEDYI 280
|
Length = 285 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 5e-05
Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 31/204 (15%)
Query: 840 MVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAG 899
++ P + ++L +Y K L ++ + +TA +G SG G
Sbjct: 5 SMVATAPSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCG 51
Query: 900 KTTLMDVLAGRKTSGY----VEGEIKISGY----PKVQETF--ARVSGYCEQTDIHSPNI 949
K+TL+ R Y EGEI + G PK A+V G Q P +
Sbjct: 52 KSTLLRTF-NRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKV-GMVFQKPTPFP-M 108
Query: 950 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DAIKDSLVGIPGVNGLSTEQRKR 1008
++ +++ F +RL +++ E V L L + +KD L G LS Q++R
Sbjct: 109 SIYDNIAFG--VRLFEKLSRAEMDERVEWALTKAALWNEVKDKL-HQSG-YSLSGGQQQR 164
Query: 1009 LTIAVELVANPSIIFMDEPTTGLD 1032
L IA + P ++ +DEP + LD
Sbjct: 165 LCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-05
Identities = 58/247 (23%), Positives = 93/247 (37%), Gaps = 55/247 (22%)
Query: 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGR--KTSGYVEGEIKISGYPKVQET 931
L+ L +V+ + G A++G +G+GKTT ++ L +G +E K K ++
Sbjct: 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE---KNKKK 76
Query: 932 FARVSGYCEQTDIHSP------NI---------------------TVEESVIFSAWLRLA 964
E+ I I T+E+ +IF
Sbjct: 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIF------G 130
Query: 965 PEINSKTKAEFVNEVLETIELDAIKDSLVGIP------GVNGLSTEQRKRLTIAVELVAN 1018
P +K E + IEL VG+ LS Q++R+ +A L
Sbjct: 131 PVSMGVSKEEAKKRAAKYIEL-------VGLDESYLQRSPFELSGGQKRRVALAGILAME 183
Query: 1019 PSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSID-IFEAFDELILLKTG 1077
P + DEPT GLD + ++ N+ G+TI+ H +D + E I K
Sbjct: 184 PDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH--DLDNVLEWTKRTIFFKD- 240
Query: 1078 GRIIYCG 1084
G+II G
Sbjct: 241 GKIIKDG 247
|
Length = 305 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-05
Identities = 61/262 (23%), Positives = 98/262 (37%), Gaps = 67/262 (25%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
L +V+ LKPG+M + GP G GKST L + + D S G++ ++ L
Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPL------- 379
Query: 246 TSAYISQNDLHIAEMTVRETV---------DFSARCQGVGSREETMMEVSRREKEAGIVP 296
L + R V D A +G + T E+ + A +
Sbjct: 380 -------TKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHD 432
Query: 297 DPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI--SGGQKKRLTTG 354
D IL L DT VG RG+ SGGQK+R++
Sbjct: 433 D--------------------------ILRLPQGYDTEVG---ERGVMLSGGQKQRISIA 463
Query: 355 EMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVH---ITDSTALISLLQPAPETFDLF 411
++ + L +D+ + +D T +QI+ ++Q + S +S L A
Sbjct: 464 RALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEA------- 516
Query: 412 DDIILMAEGKIVYHGPQDHVLA 433
+I++M G I G D +
Sbjct: 517 SEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-05
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 25/220 (11%)
Query: 880 VTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE---GEIKISGYPKVQETFAR 934
V+ ++ G + ++G SGAGKTTL ++AG TSG V G+ + + R
Sbjct: 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGR 362
Query: 935 VSGYC----EQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKD 990
Y ++ D++ P+ TV +++ + L L E+ ++ KA +++ E A ++
Sbjct: 363 AKRYIGILHQEYDLY-PHRTVLDNLTEAIGLELPDEL-ARMKAVITLKMVGFDEEKA-EE 419
Query: 991 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTG 1050
L P + LS +R R+ +A L+ P I+ +DEPT +D I V + +
Sbjct: 420 ILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSILKA 473
Query: 1051 R-----TIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
R T + H + + D L++ G+I+ G
Sbjct: 474 REEMEQTFIIVSHDMDF-VLDVCDRAALMR-DGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 6e-05
Identities = 55/254 (21%), Positives = 96/254 (37%), Gaps = 73/254 (28%)
Query: 196 PGR-MTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE-----FVPP--KTS 247
P R +T L GP G GK++ + ++G P G + NG L + F+PP +
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 248 AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAI 307
Y+ Q+ TVR + + M S R
Sbjct: 79 GYVFQDARLFPHYTVRGNLRY-------------GMWKSMRA------------------ 107
Query: 308 SVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMD 367
Q D ++ +LG++ D G +SGG+K+R+ G ++ + L MD
Sbjct: 108 ---------QFDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPELLLMD 153
Query: 368 EITNGLDSSTAYQIIACIQQL--------VHITDSTALISLLQPAPETFDLFDDIILMAE 419
E LD +I+ +++L ++++ S E L D ++++
Sbjct: 154 EPLASLDLPRKREILPYLERLRDEINIPILYVSHSLD---------EVLRLADRVVVLEN 204
Query: 420 GKIVYHGPQDHVLA 433
GK+ GP + V
Sbjct: 205 GKVKASGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 50/213 (23%)
Query: 198 RMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDL 255
++T ++GP GCGKSTF+K L+ L+ +KV G V + G + + P+ + + +
Sbjct: 34 KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD---PRININRLRRQI 90
Query: 256 HIA-------EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAIS 308
+ M++ E V + R + + D +++ +K +
Sbjct: 91 GMVFQRPNPFPMSIYENVAYGVRISAKLPQADL---------------DEIVESALKGAA 135
Query: 309 VKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDE 368
+ D + +A+ G+SGGQ++RL + K L MDE
Sbjct: 136 L-----------------WQEVKDKLNKSAL--GLSGGQQQRLCIARALAIKPKVLLMDE 176
Query: 369 ITNGLDSSTAYQIIACIQQLVHITDSTALISLL 401
+ LD + +++L+H S I+++
Sbjct: 177 PCSALDPIATMK----VEELIHSLRSELTIAIV 205
|
Length = 259 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-05
Identities = 65/274 (23%), Positives = 104/274 (37%), Gaps = 58/274 (21%)
Query: 167 MISVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDP--- 223
MI V +S + ++ N L +VS + G +LG G GKST K L+G L P
Sbjct: 7 MIKV-ENVS-FSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG 64
Query: 224 SLKVTGEV--SYNGYKLEEFVPPKTSAYISQN-DLHIAEMTVRETVDFSA--RCQGVGSR 278
+K+ G N ++ + + I QN D TV + + F +
Sbjct: 65 EIKIDGITISKENLKEIRKKI-----GIIFQNPDNQFIGATVEDDIAFGLENKK------ 113
Query: 279 EETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338
V ++ MK I K+ DY+ K
Sbjct: 114 ------VPPKK--------------MKDIIDDLAKKVGMEDYLDK--------------- 138
Query: 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI 398
+ +SGGQK+R+ ++ + + DE T+ LD +I + L T LI
Sbjct: 139 EPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKT-LI 197
Query: 399 SLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVL 432
S+ E L D +I+ +EGK++ G +L
Sbjct: 198 SITHDMDEAI-LADKVIVFSEGKLIAQGKPKEIL 230
|
Length = 271 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 7e-05
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISL-- 400
+SGG+++R+ + L +DE T+ LD + +++ +++L T ++ L
Sbjct: 98 LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157
Query: 401 LQPAPETFDLFDDIILMAEGKIVYHG 426
L A D +IL+ +G+IV G
Sbjct: 158 LNLA---ARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 7e-05
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEV 231
+L +VS ++PG ++GP G GKST + + G L P+ +G V
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRV 59
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 58/261 (22%), Positives = 92/261 (35%), Gaps = 70/261 (26%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L +SG ++ G + L+GP G GKST L ++G S G + + G LE + +
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS----GSIQFAGQPLEAWSATEL 70
Query: 247 S---AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTY 303
+ AY+SQ M V Y
Sbjct: 71 ARHRAYLSQQQTPPFAMPVWH--------------------------------------Y 92
Query: 304 MKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGG--QKKRLTTGEMIVGP- 360
+ + RT + + L LD +SGG Q+ RL + + P
Sbjct: 93 L-TLHQPDKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPD 146
Query: 361 ----TKALFMDEITNGLD---SSTAYQIIA--CIQQLVHITDSTALISLLQPAPETFDLF 411
+ L +DE N LD S ++++ C Q L + S L L+ A
Sbjct: 147 ANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA------- 199
Query: 412 DDIILMAEGKIVYHGPQDHVL 432
L+ GK++ G ++ VL
Sbjct: 200 HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-05
Identities = 58/248 (23%), Positives = 92/248 (37%), Gaps = 80/248 (32%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKLEEFVPP 244
L +S + R+T +GP GCGKST L+ + +L + ++ GE+ +G
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN------- 93
Query: 245 KTSAYISQNDLHIAEMTVR----------------ETVDFSARCQGVGSREETMMEVSRR 288
I + +AE+ R E V + R QG+ +R V R
Sbjct: 94 -----IYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERS 148
Query: 289 EKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQK 348
+ A + + VK D + NA G+SGGQ+
Sbjct: 149 LRGAALWDE-----------VK---------------------DRLHENAF--GLSGGQQ 174
Query: 349 KRLTTGEMIVGPTKALFMDEITNGLDS-STA------------YQIIAC---IQQLVHIT 392
+RL I + L +DE T+ LD ST Y I+ +QQ ++
Sbjct: 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVS 234
Query: 393 DSTALISL 400
D TA + +
Sbjct: 235 DYTAFMYM 242
|
Length = 272 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 7e-05
Identities = 47/187 (25%), Positives = 67/187 (35%), Gaps = 64/187 (34%)
Query: 855 KYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKT 912
KY+ + + R ++ + V+ S++ G L+G SG GK+TL ++ G T
Sbjct: 12 KYF-----PVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT 66
Query: 913 SGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTK 972
SG EI G I +K
Sbjct: 67 SG----EILFEGKD----------------------------------------ITKLSK 82
Query: 973 AEFVNEVLETIELDAIKDSLVGIPGVNG------LSTEQRKRLTIAVELVANPSIIFMDE 1026
E VLE +E VG+P LS QR+R+ IA L NP +I DE
Sbjct: 83 EERRERVLELLEK-------VGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADE 135
Query: 1027 PTTGLDA 1033
P + LD
Sbjct: 136 PVSALDV 142
|
Length = 268 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 8e-05
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALIS--LL 401
SGG K+RL + ++ + L +DE T+GLD + + +++L T L+S +L
Sbjct: 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHIL 155
Query: 402 QPAPETFDLFDDIILMAEGKI 422
+ A L D + ++ G+I
Sbjct: 156 EEAER---LCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 8e-05
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 1001 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQ 1059
LS Q++R+ IA L P ++ DEPT+ LD V++ ++++ GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 8e-05
Identities = 72/300 (24%), Positives = 124/300 (41%), Gaps = 56/300 (18%)
Query: 131 IKLPTIEVRYKNL-CVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAK------ 183
I LP I K+L + E+++ KPL + N+ G KL K ++ K
Sbjct: 340 IILPNITEYMKSLEATNSLYEIINRKPL--VENNDDG-----KKLKDIKKIQFKNVRFHY 392
Query: 184 -----INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKL 238
+ I ++ L G+ +G GCGKST LK + DP+ G++ N
Sbjct: 393 DTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHN 449
Query: 239 EEFVPPK----TSAYISQNDLHIAEMTVRETVDFSARC-------------QGVGSREET 281
+ + K +SQ+ L + +++ + +S G S+E
Sbjct: 450 LKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENK 508
Query: 282 MMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQT-------DYILKILGLDVCA--- 331
S R K AG + D + + + +++ QT D K+L D +
Sbjct: 509 NKRNSCRAKCAGDLND--MSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALP 566
Query: 332 ---DTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQL 388
+T+VG+ + +SGGQK+R++ I+ K L +DE T+ LD+ + Y + I L
Sbjct: 567 DKYETLVGSNASK-LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL 625
|
Length = 1466 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 9e-05
Identities = 62/276 (22%), Positives = 109/276 (39%), Gaps = 62/276 (22%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
L +S +K G LLGP GCGK+T L+ ++G + G + G + +PP+
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDI-TRLPPQ 74
Query: 246 TSAY--ISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTY 303
Y + Q+ +TV + + + + +G+G E E+
Sbjct: 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAE-------VAER------------- 114
Query: 304 MKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKA 363
+L ++GL G +SGGQ++R+ +
Sbjct: 115 --------------VAELLDLVGLPGSERKYPGQ-----LSGGQQQRVALARALATSPGL 155
Query: 364 LFMDEITNGLDSSTAYQI---IACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420
L +DE + LD+ + I +Q+ + +T T +++ Q E + D I++M G
Sbjct: 156 LLLDEPLSALDARVREHLRTEIRQLQRRLGVT--TIMVTHDQ--EEALSMADRIVVMNHG 211
Query: 421 KIVYHG-PQDHVLAFFEDCGFRCPERKGVSDFLQEV 455
I G PQ+ +R P V+DF+ EV
Sbjct: 212 VIEQVGTPQEI---------YRHPATPFVADFVGEV 238
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 9e-05
Identities = 38/194 (19%), Positives = 77/194 (39%), Gaps = 32/194 (16%)
Query: 885 RPGVLTALMGVSGAGKTTLMDVLAGRKTS--GYVEGE------IKISGYPKVQETFARVS 936
R G + L+G +G GK+T + +LAG+ G + + ++Q F ++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 937 GYCEQTD-IHSPNI------TVEESVIFSAWLRLAPEINSKT-KAEFVNEVLETIELDAI 988
I P V+ V E+ K + ++E+++ +EL +
Sbjct: 84 E--GDVKVIVKPQYVDLIPKAVKGKVG---------ELLKKKDERGKLDELVDQLELRHV 132
Query: 989 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN 1048
D ++ LS + +R+ IA L + F DEP++ LD + R ++ +
Sbjct: 133 LDR-----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE 187
Query: 1049 TGRTIVCTIHQPSI 1062
++ H ++
Sbjct: 188 DDNYVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 55/215 (25%)
Query: 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP 244
IL+ ++ ++ G+M ++G G GKST L + +G+V NG +E P
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNG---QETPPL 65
Query: 245 KTS----------AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGI 294
+ Y+ QN I TV E +D G+
Sbjct: 66 NSKKASKFRREKLGYLFQNFALIENETVEENLDL------------------------GL 101
Query: 295 VPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTG 354
Y K K KR + L+ +GL++ + +SGG+++R+
Sbjct: 102 K-------YKKLS--KKEKREKKK-EALEKVGLNLKLKQKIYE-----LSGGEQQRVALA 146
Query: 355 EMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLV 389
I+ P + DE T LD +++ + +L
Sbjct: 147 RAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 47/205 (22%)
Query: 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG-RKTSGYVEGEIKISGYPKVQETFA 933
+ DV+ ++R G + + G+ GAG+T L L G R S GEI + G
Sbjct: 273 GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASS---GEILLDG--------- 320
Query: 934 RVSGYCEQTDIHSP----------------------NITVEESVIFSAWLRLAPE--INS 969
+ I SP ++++ E++ ++ R + I+
Sbjct: 321 ------KPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDR 374
Query: 970 KTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 1029
+ + + + IK P + LS ++++ +A L +P ++ +DEPT
Sbjct: 375 RKERALAERYIRRLR---IKTPSPEQP-IGTLSGGNQQKVVLARWLATDPKVLILDEPTR 430
Query: 1030 GLDARAAAIVMRAVKNIVNTGRTIV 1054
G+D A A + R ++ + G+ I+
Sbjct: 431 GIDVGAKAEIYRLIRELAAEGKAIL 455
|
Length = 500 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 67/274 (24%), Positives = 112/274 (40%), Gaps = 52/274 (18%)
Query: 171 LPKLSGYKSLE--------AKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD 222
LP+ G+ S+E K L +S L+ G ++GP G GKST + + G
Sbjct: 310 LPEPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP 369
Query: 223 PSLKVTGEVSYNGYKLEEFVPP---KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSRE 279
P+ +G V +G L+++ K Y+ Q D+ + TV E + AR
Sbjct: 370 PT---SGSVRLDGADLKQWDRETFGKHIGYLPQ-DVELFPGTVAENI---AR-------- 414
Query: 280 ETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAM 339
E + D + ++A + GV IL L DT++G
Sbjct: 415 --FGE------------NADPEKIIEAAKLAGVHEL--------ILRLPDGYDTVIGPG- 451
Query: 340 RRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALIS 399
+SGGQ++R+ + G K + +DE + LD + I+ L + +I+
Sbjct: 452 GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVIT 511
Query: 400 LLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLA 433
P D I+++ +G+I G +D VLA
Sbjct: 512 ---HRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 28/204 (13%)
Query: 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISG--------- 924
L +L + S+ G AL+G SG+GK+T++ +L EG+I++ G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILM--TLEPIDEGQIQVEGEQLYHMPGR 70
Query: 925 ----YPKVQETFARVS---GYCEQTDIHSPNITVEESVIFSAWLRLAP-EINSKTKAEFV 976
P ++ ++ G Q+ P+ TV ++V AP + +AE
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVT------EAPVLVLGMARAEAE 124
Query: 977 NEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036
+E +++ + D +P LS Q++R+ IA L P ++ DE T+ LD
Sbjct: 125 KRAMELLDMVGLADKADHMPA--QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 1037 AIVMRAVKNIVN-TGRTIVCTIHQ 1059
V+ ++ + + T++ H+
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 19/116 (16%)
Query: 167 MISVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLK 226
+ G + A+ L +S + G ++G G GKST LK ++G P+
Sbjct: 24 KKRLKGLAKGGR-KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-- 80
Query: 227 VTGEVSYNGYKLEEFVPPKTSAYISQNDLHIA---EMTVRETVDFSARCQGVGSRE 279
+G+V G K + I +L E+T RE + G+ +E
Sbjct: 81 -SGKVKVTG---------KVAPLI---ELGAGFDPELTGRENIYLRGLILGLTRKE 123
|
Length = 249 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 55/234 (23%), Positives = 94/234 (40%), Gaps = 43/234 (18%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L V+ ++ G L+G GCGKST L +SG P+ +G V G ++ E P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGPDRM 57
Query: 247 SAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKA 306
+ QN + +TVRE + + + ++S+ E+ A IV
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDR--------VLPDLSKSERRA-IV----------- 95
Query: 307 ISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFM 366
+ + ++GL AD G +SGG K+R+ + K L +
Sbjct: 96 ------------EEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 367 DEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420
DE LD+ T + + Q+ T L+ + E L D ++++ G
Sbjct: 139 DEPFGALDALTRGNLQEELMQIWEEHRVTVLM-VTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 61/256 (23%), Positives = 109/256 (42%), Gaps = 55/256 (21%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
ILN +S + G+ ++G G GKST L+ L D + +G ++ +G + +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRD----- 329
Query: 246 TSAYISQNDLHIAEMTV-RETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
++Q L A V ++TV F+ +T+ + + ++
Sbjct: 330 ----VTQQSLRRAIGIVPQDTVLFN----------DTIAYNIKYGRP--DATAEEVGAAA 373
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG--ISGGQKKRLTTGEMIVGPTK 362
+A + ++L Y DT VG RG +SGG+K+R+ I+
Sbjct: 374 EAAQIHDFIQSLPEGY-----------DTGVG---ERGLKLSGGEKQRVAIARTILKNPP 419
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPETFDLFDDIILM 417
L +DE T+ LD+ T I A ++++ T L+ S + A D+II++
Sbjct: 420 ILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLSTIIDA-------DEIIVL 470
Query: 418 AEGKIVYHGPQDHVLA 433
G+IV G + +LA
Sbjct: 471 DNGRIVERGTHEELLA 486
|
Length = 497 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 1e-04
Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 54/217 (24%)
Query: 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKLEEFV 242
++L+ ++ +K ++T +GP GCGKSTFL+ L+ +L GE+ + G
Sbjct: 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR--- 152
Query: 243 PPKTSAYISQNDLHIA-----------EMTVRETVDFSARCQGVGSREETMMEVSRREKE 291
S IS +L EM++ + V + R G+ R+ V + K
Sbjct: 153 ----SKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKS 208
Query: 292 AGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRL 351
A + + VK L GNA+ SGGQ++RL
Sbjct: 209 AALWDE--------------VKDDLDK----------------AGNAL----SGGQQQRL 234
Query: 352 TTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQL 388
I + L MDE T+ LD +I I +L
Sbjct: 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILEL 271
|
Length = 329 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 1e-04
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 15/213 (7%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETF---- 932
L V+ S+ G +++G +G+GK+T ++ G EG++KI G E
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELLTAENVWNLR 80
Query: 933 ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL 992
++ + D TVE+ V F E + E + V E + + D
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGM------ENQGIPREEMIKRVDEALLAVNMLDFK 134
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRT 1052
P LS Q++R+ +A + P II +DE T+ LD +MR + I +
Sbjct: 135 TREPA--RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192
Query: 1053 IVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
V +I +D + D ++++K G I P
Sbjct: 193 TVLSITH-DLDEAASSDRILVMKAGEIIKEAAP 224
|
Length = 277 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 57/263 (21%), Positives = 97/263 (36%), Gaps = 63/263 (23%)
Query: 179 SLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVT-GEVSYNGYK 237
+L+A +++ VS L+ GR+ L+G G GKS A G L ++ T G V +G
Sbjct: 11 ALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKP 70
Query: 238 LE-EFVPPKTSAYISQ------NDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREK 290
+ + + A I Q N LH RET G + + T+
Sbjct: 71 VAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETC----LALGKPADDATLTAA----- 121
Query: 291 EAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKR 350
++A+ ++ R L+ Y + +SGG +R
Sbjct: 122 -------------LEAVGLENAARVLKL-YPFE-------------------MSGGMLQR 148
Query: 351 LTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFD- 409
+ ++ + DE T LD +I+ ++ +V L+ T D
Sbjct: 149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLV-------THDM 201
Query: 410 -----LFDDIILMAEGKIVYHGP 427
L DD+ +M+ G+IV G
Sbjct: 202 GVVARLADDVAVMSHGRIVEQGD 224
|
Length = 254 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 21/197 (10%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV----QET 931
+L D+T + + +MG SG+GK+TL+ VL R Y + +IK+ G KV ++
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIY-DSKIKVDG--KVLYFGKDI 80
Query: 932 FA-------RVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 984
F + G Q P++++ +++ + L+ + + V E L +
Sbjct: 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVG 138
Query: 985 L-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
L + D L P + LS Q++RLTIA L P ++ MDEPT+ +D + + + +
Sbjct: 139 LWKEVYDRL-NSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI 196
Query: 1044 KNIVNTGRTIVCTIHQP 1060
+ N IV H P
Sbjct: 197 TELKNE-IAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 880 VTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFARVSG 937
V+ +LR G A++G +G+GK+TL +LAG TSG EI I+ +P ++ S
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG----EILINDHPLHFGDYSFRSK 87
Query: 938 YCE---QTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVG 994
Q S N + I LRL ++ + + + + E L + L + D
Sbjct: 88 RIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL--LPDHANY 145
Query: 995 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 1033
P + L+ Q++R+ +A L+ P II DE LD
Sbjct: 146 YP--HMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 196 PGRMTLLLGPPGCGKSTFLKALSGNLDPS 224
PG + L++GPPG GK+T +AL+ L P
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPP 29
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 19/124 (15%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L+ +S + G++ L+G G GKST LK LSGN P G + +G +E T
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDG---QEMRFAST 73
Query: 247 S-------AYISQNDLHIA-EMTVRETV---DFSARCQGVGSREETMMEVSRREKEAGIV 295
+ A I Q +LH+ EMTV E + + G+ +R E + + G+
Sbjct: 74 TAALAAGVAIIYQ-ELHLVPEMTVAENLYLGQLPHK-GGIVNRRLLNYEAREQLEHLGVD 131
Query: 296 PDPD 299
DPD
Sbjct: 132 IDPD 135
|
Length = 501 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 58/289 (20%), Positives = 109/289 (37%), Gaps = 64/289 (22%)
Query: 791 LKSSGSSRVMISHEKLAKMQESEDS----------SYGEPVKENSRS-----------TP 829
L + G + + I+H KL ++ D +PV E +
Sbjct: 186 LAAEGKTIIFITH-KLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEELAELMVGREVVL 244
Query: 830 MTNKESYK-GRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGV 888
K G +VL E L+V R + + DV+ +R G
Sbjct: 245 RVVKPPSTPGEVVLEVEDLSVK-------------------DRRGVTAVKDVSFEVRAGE 285
Query: 889 LTALMGVSGAGKTTLMDVLAG-RKTSGYVEGEIKISGYPKVQETFA---RVSGY-CEQTD 943
+ + GV+G G++ L++ ++G RK + G I ++G + R G D
Sbjct: 286 IVGIAGVAGNGQSELVEAISGLRKPAS---GRILLNGKDVLGRLSPRERRRLGLAYVPED 342
Query: 944 IH----SPNITVEESVIFSAWLRLAPE-----INSKTKAEFVNEVLETIELDAIKDSLVG 994
H ++++ E+++ P ++ + +F E++E E D ++
Sbjct: 343 RHGHGLVLDLSLAENLVLG-RHDKKPFSRGGFLDRRAIRKFARELIE--EFD-VRAPSPD 398
Query: 995 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
P LS +++L +A EL P ++ +PT GLD A + +
Sbjct: 399 AP-ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL 446
|
Length = 501 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 48/220 (21%), Positives = 83/220 (37%), Gaps = 51/220 (23%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
Y+ + +L VS + G + ++G G GKST L L G +P+ +GEV +NG
Sbjct: 11 YQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQ 67
Query: 237 KLEEFVPPKTSA-------YISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRRE 289
L + + + +I Q + + T E V M +
Sbjct: 68 SLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENV---------------AMPL---- 108
Query: 290 KEAGIVPDPDIDTYMKAISVKGVKRTLQTDY-ILKILGLDVCADTMVGNAMRRGISGGQK 348
I K VK + Y +L+ +GL+ + +SGG++
Sbjct: 109 ----------------LIGKKSVKEAKERAYEMLEKVGLEHRINHRPSE-----LSGGER 147
Query: 349 KRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQL 388
+R+ +V + DE T LD++ A I + +L
Sbjct: 148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 22/159 (13%)
Query: 887 GVLTALMGVSGAGKTTLM-------DVLAGRKTSGYV--EGEIKISGYPKVQETFARVSG 937
+TAL+G SG GK+T + D++ G +G V G+ + V + +V
Sbjct: 31 NEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGM 90
Query: 938 YCEQTDIHSPN---ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DAIKDSLV 993
+Q PN ++ E+VI+ LRLA + E V L+ + D +KD L
Sbjct: 91 VFQQ-----PNPFPFSIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLH 143
Query: 994 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
LS Q++R+ IA L P +I +DEPT+ LD
Sbjct: 144 --ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLL 401
+SGG +++ +M++ + L +DE T G+D Y+I I QL + A+I +
Sbjct: 403 RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ--EGVAIIVVS 460
Query: 402 QPAPETFDLFDDIILMAEGKI----VYHG-PQDHVLA 433
E L D ++++ EGK+ V H Q+ VLA
Sbjct: 461 SELAEVLGLSDRVLVIGEGKLKGDFVNHALTQEQVLA 497
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 24/99 (24%), Positives = 42/99 (42%)
Query: 631 LVASLAWTCLTYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGS 690
LV + + + G +L I++ + S+F+ AA+ S
Sbjct: 149 LVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVIS 208
Query: 691 VVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGL 729
++IL + F G + P+MP++L+W F I P GL
Sbjct: 209 ILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGL 247
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 2e-04
Identities = 58/257 (22%), Positives = 102/257 (39%), Gaps = 50/257 (19%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L+ VS +T L+GP G GK+TFL+ L+ D K
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND----------------------K 73
Query: 246 TSAYISQNDLHIAEMTV---RETVDFSARCQGVGSRE-----ETMMEVSRREKEAGIVPD 297
S Y D+ + ++ R+ ++F R + R M V + +VP
Sbjct: 74 VSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR 133
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGL-DVCADTMVGNAMRRGISGGQKKRLTTGEM 356
+ +GV + T+ +GL D D + + R +SGGQ++ L
Sbjct: 134 KEF---------RGVAQARLTE-----VGLWDAVKDRLSDSPFR--LSGGQQQLLCLART 177
Query: 357 IVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416
+ + L +DE T+ LD +T +I I+ L D +I + + + D L
Sbjct: 178 LAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL---ADRLTVIIVTHNLAQAARISDRAAL 234
Query: 417 MAEGKIVYHGPQDHVLA 433
+G++V GP + + +
Sbjct: 235 FFDGRLVEEGPTEQLFS 251
|
Length = 276 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 199 MTLLLGPPGCGKSTFLKALSG--NLDPSLKVTGEVSYNG 235
+T ++GP GCGKST++K L+ L PS+K TG++ Y
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90
|
Length = 271 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 60/258 (23%), Positives = 99/258 (38%), Gaps = 66/258 (25%)
Query: 190 VSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTS-- 247
+S ++ G + L+GP G GKST L ++G L S G + + G LE + + +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS----GSIQFAGQPLEAWSAAELARH 70
Query: 248 -AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKA 306
AY+SQ M V + + Q +R E +
Sbjct: 71 RAYLSQQQTPPFAMPVFQYLTLH---QPDKTRTEAVASA--------------------- 106
Query: 307 ISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGG--QKKRLTTGEMIVGPT--- 361
+ + + LGLD V +SGG Q+ RL + V P
Sbjct: 107 -----------LNEVAEALGLDDKLGRSVNQ-----LSGGEWQRVRLAAVVLQVWPDINP 150
Query: 362 --KALFMDEITNGLD---SSTAYQIIA--CIQQLVHITDSTALISLLQPAPETFDLFDDI 414
+ L +DE N LD + ++++ C Q + + S L L+ A D +
Sbjct: 151 AGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHA-------DRV 203
Query: 415 ILMAEGKIVYHGPQDHVL 432
L+ +GK++ G +D VL
Sbjct: 204 WLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 25/166 (15%)
Query: 884 LRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYV--EGEIKISGYPK-------VQETF 932
+R + +L+G +GAGKTT+ + L G + T G + G+ I G P V TF
Sbjct: 28 VREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQ-HIEGLPGHQIARMGVVRTF 86
Query: 933 ARVSGYCEQTDIHSPNITVE-----ESVIFSAWLRLAPEINSKTKA-EFVNEVLETIELD 986
V + E T I N+ V ++ +FS L+ ++++A + LE + L
Sbjct: 87 QHVRLFREMTVIE--NLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL 144
Query: 987 AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
+ G L+ Q++RL IA +V P I+ +DEP GL+
Sbjct: 145 EHANRQAG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 53/189 (28%), Positives = 97/189 (51%), Gaps = 16/189 (8%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRK--TSG--YVEGEIKISGYPKVQETF 932
L+++ ++ G + ++G SG+GK+TL+ + + TSG V+G +K++ PKV E
Sbjct: 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDG-LKVND-PKVDERL 74
Query: 933 ARV-SGYCEQTDIHSPNITVEESVIFSA-WLRLAPEINSKTKAEFVNEVLETIELDAIKD 990
R +G Q P++T E+V+F +R A + ++ +A E+L + L
Sbjct: 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAR---ELLAKVGLAERAH 131
Query: 991 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTG 1050
P + LS Q++R+ IA L P ++ DEPT+ LD V++ ++++ G
Sbjct: 132 HY---P--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG 186
Query: 1051 RTIVCTIHQ 1059
T+V H+
Sbjct: 187 MTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 28/220 (12%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFA----- 933
+ + + G + LMG+SG+GK+TL+ + G G + + +
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNP--VSRGSVLVKDGDGSVDVANCDAAT 99
Query: 934 -------RVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD 986
RVS +Q + P TVEE+V F ++ P+ + + + E LE + L
Sbjct: 100 LRRLRTHRVSMVFQQFAL-LPWRTVEENVAFGLEMQGMPKAERRKRVD---EQLELVGLA 155
Query: 987 AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046
D G LS ++R+ +A I+ MDEP + LD I + +
Sbjct: 156 QWADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALD---PLIRTQLQDEL 207
Query: 1047 VNTGRTIVCTIHQPSIDIFEAFD--ELILLKTGGRIIYCG 1084
+ + TI S D+ EA I + GGRII G
Sbjct: 208 LELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHG 247
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVE---GEIKISGYPKVQETFARV 935
++ +LR G A++G +G+GK+TL +L +G +E GE+ I +P ++
Sbjct: 31 PLSFTLREGQTLAIIGENGSGKSTLAKML-----AGMIEPTSGELLIDDHPLHFGDYSYR 85
Query: 936 SGYCE---QTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL 992
S Q S N S I LRL ++ + + + + E L + L + D
Sbjct: 86 SQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL--LPDHA 143
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
P + L+ Q++RL +A L+ P +I DE LD
Sbjct: 144 SYYP--HMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 59/245 (24%), Positives = 93/245 (37%), Gaps = 68/245 (27%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYN 234
Y + EA N+ + G++T L+GP GCGKST L++L+ +L + G V ++
Sbjct: 23 YGTFEAVKNVFCDI----PRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78
Query: 235 GYKL--EEFVPPKTSAYISQ-----NDLHIAEMTVRETVDFSARCQGVGSREETMMEVSR 287
G L P + I N ++ E + F AR G + ++E S
Sbjct: 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPF---PKSIYENIAFGARINGYTGDMDELVERSL 135
Query: 288 REKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQ 347
R +A + D C D + N +SGGQ
Sbjct: 136 R--KAAV--------------------------------WDECKDKL--NESGYSLSGGQ 159
Query: 348 KKRLTTGEMIVGPTKALFMDEITNGLDS-ST------------AYQIIAC---IQQLVHI 391
++RL I + + MDE + LD ST + I+ +QQ V +
Sbjct: 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRV 219
Query: 392 TDSTA 396
+D TA
Sbjct: 220 SDMTA 224
|
Length = 269 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 178 KSLEAKIN---ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVT-GEVSY 233
K L + IL V+ +K G + L+GP G GKST K + G+ P +VT GE+ +
Sbjct: 4 KDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH--PKYEVTEGEILF 61
Query: 234 NG 235
G
Sbjct: 62 KG 63
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 16/159 (10%)
Query: 889 LTALMGVSGAGKTTLM-------DVLAGRKTSGYV--EGEIKISGYPKVQETFARVSGYC 939
+TA++G SG GK+T + D++ T+G + +GE I G + + G
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGE-DIYGKFTDEVLLRKKIGMV 125
Query: 940 EQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DAIKDSLVGIPGV 998
Q P ++ +++ + RL + K E V + L L D + D L
Sbjct: 126 FQKPNPFPK-SIFDNIAYGP--RLHGINDKKQLEEIVEKSLRKAALWDEVSDRLD--KNA 180
Query: 999 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 1037
GLS Q++RL +A L P I+ +DEPT+ LD +A A
Sbjct: 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-04
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 193 ILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL-KVTGEVSY 233
I K G++T +LGP G GK+T +K LSG L P+L E S+
Sbjct: 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSW 136
|
Length = 590 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 3e-04
Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 17/157 (10%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L +++ L G L A+ G +G+GK++L+ ++ G EG+IK SG R+
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS--EGKIKHSG---------RI 489
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
S + QT P T+++++IF L+ + T ++ E I L KD V
Sbjct: 490 S-FSPQTSWIMPG-TIKDNIIFG----LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLG 543
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
G LS QR R+++A + + + +D P T LD
Sbjct: 544 EGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 18/180 (10%)
Query: 889 LTALMGVSGAGKTTLM---DVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCE----- 940
+TAL+G SG GK+T + + + + EGEI + +P + E
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HPDNVNILSPEVDPIEVRMRI 101
Query: 941 QTDIHSPN---ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DAIKDSLVGIP 996
PN ++ E+V + LR+ E V L L D +KD L G
Sbjct: 102 SMVFQKPNPFPKSIFENVAYG--LRIRGVKRRSILEERVENALRNAALWDEVKDRL-GDL 158
Query: 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCT 1056
N LS Q++RL IA L +P I+ DEPT+ LD A A + + ++ N ++ T
Sbjct: 159 AFN-LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVT 217
|
Length = 265 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGY-------PKVQET 931
D + ++ G + +MG+SG+GK+T++ +L + G++ I G +++E
Sbjct: 46 DASLAIEEGEIFVIMGLSGSGKSTMVRLL--NRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDS 991
+ Q+ P++TV ++ F L + KA L+ + +++
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKA------LDALRQVGLENY 157
Query: 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
P + LS R+R+ +A L NP I+ MDE + LD
Sbjct: 158 AHSYP--DELSGGMRQRVGLARALAINPDILLMDEAFSALD 196
|
Length = 400 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 17/206 (8%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISG-----YPKVQET 931
L ++ ++ G ++G +G+GK+TL L G +G++ +SG + K+Q
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ--KGKVLVSGIDTGDFSKLQGI 75
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDS 991
V + + TVEE + F P I + + V+ L I L+ +
Sbjct: 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR---VDRALAEIGLEKYRHR 132
Query: 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGR 1051
LS Q + + +A L P + DE T+ LD + V+ +K + G+
Sbjct: 133 -----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 1052 TIVCTIHQPSIDIFEAFDELILLKTG 1077
TIV H +++ D +I++ G
Sbjct: 188 TIVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLL 401
G+SGGQ++R+ + L +DE T+ LD T ++ A ++ L T ++
Sbjct: 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159
Query: 402 QPAPETFDLFDDIILMAEGK 421
E L D ++++ +GK
Sbjct: 160 DLD-EAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 41/183 (22%), Positives = 63/183 (34%), Gaps = 48/183 (26%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE--FVPPKTSAYIS 251
L G + GP G GK+T L+ L+G L P +GEV +NG L E P + Y+
Sbjct: 23 LNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRDEPHRNILYLG 79
Query: 252 QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKG 311
E++ E + F A + + +E +
Sbjct: 80 HLPGLKPELSALENLHFWAA---IHGGAQRTIEDA------------------------- 111
Query: 312 VKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITN 371
L +GL D +S GQ++RL + + +DE T
Sbjct: 112 ----------LAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTT 156
Query: 372 GLD 374
LD
Sbjct: 157 ALD 159
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 60/244 (24%), Positives = 95/244 (38%), Gaps = 48/244 (19%)
Query: 202 LLGPPGCGKSTFLKALSG--NLDPSLKVTGEVSYNGYKL-EEFVPP----KTSAYISQND 254
L+GP GCGKST L+ + L+ +V GEV G + V P + + Q
Sbjct: 35 LMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP 94
Query: 255 LHIAEMTVRETVDFSARCQG-VGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVK 313
+T+ + V + G V S++E V K+A + + VK
Sbjct: 95 NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE--------------VK 140
Query: 314 RTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGL 373
L DY N +SGGQ++RL + K L MDE T +
Sbjct: 141 DRLN-DY--------------PSN-----LSGGQRQRLVIARALAMKPKILLMDEPTANI 180
Query: 374 DSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLA 433
D +I + +L + T ++ PA + + D + + GK++ GP V
Sbjct: 181 DPVGTAKIEELLFELK--KEYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRKV-- 235
Query: 434 FFED 437
FE+
Sbjct: 236 -FEN 238
|
Length = 253 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-04
Identities = 71/276 (25%), Positives = 112/276 (40%), Gaps = 57/276 (20%)
Query: 171 LPKLSGYKSLEAKIN---------ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNL 221
LP+L G + E I +L++++ +KPG ++GP G GKST K L
Sbjct: 449 LPELRGAITFE-NIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY 507
Query: 222 DPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAE-MTVRETVDFSARCQGVGSREE 280
P G+V +G DL IA+ +R + GV +E
Sbjct: 508 TPQH---GQVLVDGV-----------------DLAIADPAWLRRQM-------GVVLQEN 540
Query: 281 TMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340
+ S R+ A P + + A + G D+I L +T VG
Sbjct: 541 VLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAH-----DFIS---ELPQGYNTEVG---E 589
Query: 341 RG--ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQ-QLVHITDSTAL 397
+G +SGGQ++R+ +VG + L DE T+ LD Y+ A I + I +
Sbjct: 590 KGANLSGGQRQRIAIARALVGNPRILIFDEATSALD----YESEALIMRNMREICRGRTV 645
Query: 398 ISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLA 433
I + T D II++ +G+I G + +LA
Sbjct: 646 IIIAHRL-STVRACDRIIVLEKGQIAESGRHEELLA 680
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 34/175 (19%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKT----TLMDVLAGRKTSGYVEGEIKISGYPKVQETFAR 934
++ + G AL+G SG+GK+ +++ +L + + G I G E
Sbjct: 28 GISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDG-----EDLLA 81
Query: 935 VSGYCEQT-------DIH----------SPNITVEESVIFSAWLRLAPEINSKTKAEFVN 977
S E+ I +P T+ + + LRL ++
Sbjct: 82 AS---ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV--LRLHRGLSRAAARARAL 136
Query: 978 EVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
E+LE + + + L P + LS QR+R+ IA+ L P ++ DEPTT LD
Sbjct: 137 ELLELVGIPEPEKRLDAYP--HELSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 54/237 (22%), Positives = 88/237 (37%), Gaps = 58/237 (24%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGY----KLEE 240
L +S ++ + +GP GCGKSTFL+ + +L P+ ++ GE+ +G K +
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 241 FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI 300
+ + + + ++ E V + R GV V K A +
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAAL------ 132
Query: 301 DTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGE-MIVG 359
D D + +A +SGGQ++RL M V
Sbjct: 133 --------------------------WDEVKDKLKESAF--ALSGGQQQRLCIARAMAVS 164
Query: 360 PTKALFMDEITNGLDS-STA------------YQIIAC---IQQLVHITDSTALISL 400
P+ L MDE + LD STA Y I+ +QQ ++D TA +
Sbjct: 165 PS-VLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYM 220
|
Length = 250 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 55/249 (22%), Positives = 94/249 (37%), Gaps = 60/249 (24%)
Query: 198 RMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP-KTSAYISQNDLH 256
+T +GP GCGKSTFL+ + ++ +FVP K + + +
Sbjct: 32 EVTAFIGPSGCGKSTFLRCFN------------------RMNDFVPNCKVKGELDIDGI- 72
Query: 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIV---PDPDIDTYMKAIS----V 309
V S + V + G+V P+P + ++ +
Sbjct: 73 -----------------DVYSVD---TNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKL 112
Query: 310 KGVKRTLQT-DYI----LKILGL-DVCADTMVGNAMRRGISGGQKKRLTTGEMI-VGPTK 362
G+ + + D I L +GL + D + +A +SGGQ++RL I V PT
Sbjct: 113 HGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFE--LSGGQQQRLCIARAIAVKPT- 169
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422
L MDE + LD I IQ+L + +I + + + D + G+I
Sbjct: 170 MLLMDEPCSALDPVATNVIENLIQEL---KKNFTIIVVTHSMKQAKKVSDRVAFFQSGRI 226
Query: 423 VYHGPQDHV 431
V + +
Sbjct: 227 VEYNTTQEI 235
|
Length = 251 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV-N 1048
++LVG + LS Q++R++IA ++ NP I+ +DE T+ LD ++ +V + + N+ N
Sbjct: 570 ETLVG-SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGN 628
Query: 1049 TGRTIVCTIHQPS 1061
R + H+ S
Sbjct: 629 ENRITIIIAHRLS 641
|
Length = 1466 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 14/187 (7%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE-GEIKISGYPKVQETFA 933
L VT +RPG + L G SGAGK+TL+ ++ G R ++G + I+ + F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 934 RVS-GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-DAIKDS 991
R G Q + TV ++V + A + + + V+ L+ + L D K+
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR---VSAALDKVGLLDKAKNF 134
Query: 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGR 1051
+ LS +++R+ IA +V P+++ DEPT LD + ++R + G
Sbjct: 135 PIQ------LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGV 188
Query: 1052 TIVCTIH 1058
T++ H
Sbjct: 189 TVLMATH 195
|
Length = 222 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 4e-04
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 202 LLGPPGCGKSTFLKALSGNLDPSLKVTGEVSY-NGYKLEEFVPPKTSAYISQNDLHIAEM 260
L+G GCGKSTF+K L G+L+PS G VS +L + Q+ E
Sbjct: 32 LIGANGCGKSTFMKILGGDLEPS---AGNVSLDPNERL---------GKLRQDQFAFEEF 79
Query: 261 TVRETV 266
TV +TV
Sbjct: 80 TVLDTV 85
|
Length = 530 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 36/218 (16%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVS 936
L +T S+ G L A++G G GK++L+ L VEG + + G V+
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKG---------SVA 702
Query: 937 GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL---- 992
+Q I N ++ E+++F L ++ +VLE L + L
Sbjct: 703 YVPQQAWIQ--NDSLRENILFGKAL----------NEKYYQQVLEACALLPDLEILPSGD 750
Query: 993 ---VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV--KNIV 1047
+G GVN LS Q++R+++A + +N I D+P + +DA + V V
Sbjct: 751 RTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV 809
Query: 1048 NTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
+T + H I D +I++ +GG+I G
Sbjct: 810 LKNKTRILVTH--GISYLPQVDVIIVM-SGGKISEMGS 844
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 5e-04
Identities = 54/246 (21%), Positives = 97/246 (39%), Gaps = 46/246 (18%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP--KTSAYIS 251
++PG LLG G GK+T K L+G+ + +G+ + G + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGD---TTVTSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 252 QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKG 311
Q D +T RE + AR +GV + E
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGVPAEE-------------------------------- 2046
Query: 312 VKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITN 371
+++ ++ ++ LGL + AD + G SGG K++L+T ++G + +DE T
Sbjct: 2047 IEKV--ANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 372 GLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHV 431
G+D + I + I + A++ E L + +M +G G H+
Sbjct: 2100 GMDPQARRMLWNTIVSI--IREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157
Query: 432 LAFFED 437
+ F D
Sbjct: 2158 KSKFGD 2163
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 5e-04
Identities = 59/208 (28%), Positives = 88/208 (42%), Gaps = 50/208 (24%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRK---TSGYVEGEIKISGYPKVQETFA 933
L +V+ + +TAL+G SG GK+T + L + +EG++ I
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSI----------- 76
Query: 934 RVSGYCEQTDIHSPNITVEE-----SVIF--------SAWLRLA--PEINSKTKAEF--- 975
E DI+ P++ V E ++F S + +A P I+ K +
Sbjct: 77 ------EGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGV 130
Query: 976 VNEVLETIEL-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD-- 1032
V L + L D D L P ++ LS Q++RL IA L P II DEPT+ LD
Sbjct: 131 VENALRSAALWDETSDRLKS-PALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPI 188
Query: 1033 --ARAAAIVMRAVKNIVNTGRTIVCTIH 1058
AR ++M K+ TIV H
Sbjct: 189 STARIEDLIMNLKKDY-----TIVIVTH 211
|
Length = 258 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 58/234 (24%), Positives = 93/234 (39%), Gaps = 57/234 (24%)
Query: 190 VSGILKPGRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKL-EEFVPP-- 244
V+ ++P +T +GP GCGKST L+ L+ + P +V GEV +G L V P
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 245 --KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
+T + Q M++R+ V + GV ++++ V + + A + +
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNE----- 137
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK 362
VK L + G+SGGQ++RL I
Sbjct: 138 ---------VKDRL--------------------DKPGGGLSGGQQQRLCIARAIAVEPD 168
Query: 363 ALFMDEITNGLD--SSTA-----------YQIIAC---IQQLVHITDSTALISL 400
L MDE + LD S+ A Y I+ +QQ ++D TA +L
Sbjct: 169 VLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNL 222
|
Length = 258 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 6e-04
Identities = 68/307 (22%), Positives = 111/307 (36%), Gaps = 76/307 (24%)
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSG---NLDPSLKVTGE--VSYNG 235
E+ +N LN VS + G ++G G GKST + + G + +K+ GE + N
Sbjct: 17 ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENV 76
Query: 236 YKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIV 295
+ L K D TV + V F QG+ REE + V
Sbjct: 77 WNLRR----KIGMVFQNPDNQFVGATVEDDVAFGMENQGI-PREEMIKRV---------- 121
Query: 296 PDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGE 355
D + A+++ K +SGGQK+R+
Sbjct: 122 -----DEALLAVNMLDFKTREPAR-----------------------LSGGQKQRVAVAG 153
Query: 356 MIVGPTKALFMDEITNGLDSSTAYQIIACIQQL---VHITDSTALISLLQPAPETFDLFD 412
+I + + +DE T+ LD + +I+ I ++ +T + L + A D
Sbjct: 154 IIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASS-----D 208
Query: 413 DIILMAEGKIVYHGPQDHVLAFFEDC--------------------GFRCPERKGVSDFL 452
I++M G+I+ + A ED GF PE+ D L
Sbjct: 209 RILVMKAGEIIKEAAPSELFATSEDMVEIGLDVPFSSNLMKDLRKNGFDLPEKYLSEDEL 268
Query: 453 QEVLSRK 459
E+L+ K
Sbjct: 269 VELLADK 275
|
Length = 277 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 6e-04
Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 30/207 (14%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGR-----KTSGYVEGEIKISGYPKVQET 931
L D+ + G L A++G +G GKT+L+ + G +S + G + P+V
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYV--PQVSWI 690
Query: 932 FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKD- 990
F N TV E+++F + E +A V + ++L +D
Sbjct: 691 F---------------NATVRENILFGSDF----ESERYWRAIDVTALQHDLDLLPGRDL 731
Query: 991 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTG 1050
+ +G GVN +S Q++R+++A + +N I D+P + LDA A V + G
Sbjct: 732 TEIGERGVN-ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKG 790
Query: 1051 RTIVCTIHQPSIDIFEAFDELILLKTG 1077
+T V +Q + D +IL+ G
Sbjct: 791 KTRVLVTNQ--LHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 7e-04
Identities = 51/246 (20%), Positives = 102/246 (41%), Gaps = 53/246 (21%)
Query: 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP 244
L+ +S ++ G + LLGP G GK+T ++ + G + P +GEV ++G K +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDG-KPLDIAAR 69
Query: 245 KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
Y+ + +M V + + + A+ +G+ E +RR
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE------ARR---------------- 107
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKAL 364
+ D L+ L L A+ V +S G ++++ ++ + L
Sbjct: 108 ------------RIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELL 150
Query: 365 FMDEITNGLDSSTAYQIIACIQQL----VHITDSTALISLLQPAPETFDLFDDIILMAEG 420
+DE +GLD + I++L + ST + L++ +L D ++L+ +G
Sbjct: 151 ILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVE------ELCDRVLLLNKG 204
Query: 421 KIVYHG 426
+ V +G
Sbjct: 205 RAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 58/241 (24%), Positives = 91/241 (37%), Gaps = 50/241 (20%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALSGNLDPS---LKVTGEVSYNGYKLEEFVPPKTS-AY 249
G + LLGP G GK+T L+A+ G + P+ +KV G G++ +VP + A+
Sbjct: 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAW 62
Query: 250 ISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISV 309
D I +V TV S R + RR A
Sbjct: 63 ----DFPI---SVAHTV-MSGRTG--------HIGWLRRPCVADFA-------------- 92
Query: 310 KGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEI 369
L+ +GL AD VG +SGGQ++R+ + L +DE
Sbjct: 93 -------AVRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEP 140
Query: 370 TNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHG-PQ 428
GLD T + +L TA++ + D ++L+ G+++ G PQ
Sbjct: 141 FTGLDMPTQELLTELFIELA--GAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQ 197
Query: 429 D 429
Sbjct: 198 Q 198
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 8e-04
Identities = 50/250 (20%), Positives = 91/250 (36%), Gaps = 44/250 (17%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS---LKVTGEVSYNGYKLE-EFV 242
+N + G + +++G G GKST ++ L+ ++P+ + + GE +E V
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 243 PPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
K + Q MT+ + G +E R+EK
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQE-------RKEK------------ 109
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK 362
L LK++GL+ +SGG ++R+ +
Sbjct: 110 ----------ALEL-----LKLVGLEEYEHRYPDE-----LSGGMQQRVGLARALAAEPD 149
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422
L MDE + LD + +++L T ++ + E + D I++M G+I
Sbjct: 150 ILLMDEAFSALDPLIRDSMQDELKKL-QATLQKTIVFITHDLDEAIRIGDRIVIMKAGEI 208
Query: 423 VYHGPQDHVL 432
V G D +L
Sbjct: 209 VQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 8e-04
Identities = 57/257 (22%), Positives = 96/257 (37%), Gaps = 62/257 (24%)
Query: 190 VSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE--------- 240
+S L+ G+ ++G G GKST K L+G ++P+ +GE+ + + L
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQR 88
Query: 241 ----FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVP 296
F P TS Q I + +R D RE+ ++E R + G++P
Sbjct: 89 IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPE-----QREKQIIETLR---QVGLLP 140
Query: 297 DPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEM 356
D Y +L + GQK+RL
Sbjct: 141 D-------------------HASYYPHML------------------APGQKQRLGLARA 163
Query: 357 IVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416
++ K + DE LD S Q+I + +L + I + Q + D +++
Sbjct: 164 LILRPKVIIADEALASLDMSMRSQLINLMLELQE-KQGISYIYVTQHLGMMKHISDQVLV 222
Query: 417 MAEGKIVYHGPQDHVLA 433
M +G++V G VLA
Sbjct: 223 MHQGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 8e-04
Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 13/162 (8%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIK-ISGYPKVQ 929
K++ L++V+ + G + L+G +GAGKTTL+ L G R TSG + + K I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 930 ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK 989
V+ E + S +TVEE++ + A + + ++V E+ + I+
Sbjct: 77 IMREAVAIVPEGRRVFS-RMTVEENLAMGGF--FAERDQFQERIKWVYELFPRLHERRIQ 133
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031
+ +S +++ L I L++ P ++ +DEP+ GL
Sbjct: 134 RA-------GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
|
Length = 237 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 9e-04
Identities = 49/237 (20%), Positives = 93/237 (39%), Gaps = 43/237 (18%)
Query: 202 LLGPPGCGKSTFLKALSGNL---DPSLKVTGEVSYNG---YKLEEFVPPKTSAYISQNDL 255
++GP G GKST LK L+ + D +KV G+V Y G ++++ K + Q
Sbjct: 41 IMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100
Query: 256 HIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRT 315
+++ + + + + G+ + E V ++ G+ K V
Sbjct: 101 PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGL--------------WKEVYDR 146
Query: 316 LQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDS 375
L N+ +SGGQ++RLT + K L MDE T+ +D
Sbjct: 147 L--------------------NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI 186
Query: 376 STAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVL 432
+ I I +L + A++ + + + D + + G++V G + +
Sbjct: 187 VNSQAIEKLITEL---KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 47/200 (23%), Positives = 72/200 (36%), Gaps = 62/200 (31%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+++ +S ++ G LLGP G GK+T L+ L G P G +S G E VP +
Sbjct: 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCG----EPVPSR 74
Query: 246 TS------AYISQNDLHIAEMTVRETVDFSARCQGVGS-----REETMMEVSRREKEAGI 294
+ Q D + TVRE + R G+ + ++E ++ E +A
Sbjct: 75 ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-- 132
Query: 295 VPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTG 354
+A +SGG K+RLT
Sbjct: 133 ------------------------------------------DAKVGELSGGMKRRLTLA 150
Query: 355 EMIVGPTKALFMDEITNGLD 374
+V L +DE T GLD
Sbjct: 151 RALVNDPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 41/254 (16%)
Query: 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSG--NLDPSLKVTGEVSYNG---YKL 238
+ +L+ V+ + +T L+GP G GKST L+ + L P +V+GEV +G +K+
Sbjct: 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM 75
Query: 239 EEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDP 298
+ + + Q I +++ E V + + ++ + E R E
Sbjct: 76 DVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALE------- 128
Query: 299 DIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIV 358
KA VK L +A +SGGQ++RL +
Sbjct: 129 ------KAQLWDEVKDRL--------------------DAPAGKLSGGQQQRLCIARALA 162
Query: 359 GPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418
+ L DE T LD +I + +L ++ + + + D + +
Sbjct: 163 FQPEVLLADEPTANLDPENTAKIESLFLEL---KKDMTIVLVTHFPQQAARISDYVAFLY 219
Query: 419 EGKIVYHGPQDHVL 432
+G+IV GP V
Sbjct: 220 KGQIVEWGPTREVF 233
|
Length = 250 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 59/294 (20%), Positives = 118/294 (40%), Gaps = 16/294 (5%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L ++S ++ G + +LG G GKS + L G +D +G + Y+ E+ +
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG-MDQYEPTSGRIIYHVALCEKCGYVE 73
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
+ + + E VDF + R + + + A D +D ++
Sbjct: 74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLE 133
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
A+ G + + ++ + + + A R +SGG+K+R+ +
Sbjct: 134 ALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIA--RDLSGGEKQRVVLARQLAKEPFLFL 191
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETF-DLFDDIILMAEGKIVY 424
DE T LD TA + +++ V + + +++ PE DL D I + G+I
Sbjct: 192 ADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT--SHWPEVIEDLSDKAIWLENGEIKE 249
Query: 425 HGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVD 478
G D V+A F + G E++ + + ++ ++ + Y SVD
Sbjct: 250 EGTPDEVVAVFME-GVSEVEKECEVEVGEPIIKVRN---------VSKRYISVD 293
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 22/157 (14%)
Query: 889 LTALMGVSGAGKTTLMDVLAGRKTSG----YVEGEIKISGY----PKVQETFARVS-GYC 939
LTAL+G SG GK+T + L R + GEIK G K+ R G
Sbjct: 32 LTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMV 90
Query: 940 EQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI----KDSLVGI 995
Q P +V ++V + L++A K K V E+++ AI KD+L
Sbjct: 91 FQQPTPFP-FSVYDNVAYG--LKIA---GVKDKELIDQRVEESLKQAAIWKETKDNLD-- 142
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
S Q++R+ IA L P ++ +DEPT+ LD
Sbjct: 143 RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 57/251 (22%), Positives = 100/251 (39%), Gaps = 58/251 (23%)
Query: 197 GRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSA--YISQND 254
G + +GP GCGKST L+ ++G D + +G++ + G K VPP + Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDL-FIGEKRMNDVPPAERGVGMVFQSY 84
Query: 255 LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKR 314
++V E + F + G E +++R V V
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEE-----INQR--------------------VNQVAE 119
Query: 315 TLQTDYILKILGLDVCADTMVGNAMRR--GISGGQKKRLTTGEMIVGPTKALFMDEITNG 372
LQ ++L R+ +SGGQ++R+ G +V +DE +
Sbjct: 120 VLQLAHLLD----------------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163
Query: 373 LDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI--------VY 424
LD++ Q+ I +L T +I + E L D I+++ G++ +Y
Sbjct: 164 LDAALRVQMRIEISRLHKRLGRT-MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222
Query: 425 HGPQDHVLAFF 435
H P + +A F
Sbjct: 223 HYPANRFVAGF 233
|
Length = 369 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.001
Identities = 55/237 (23%), Positives = 94/237 (39%), Gaps = 39/237 (16%)
Query: 190 VSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAY 249
VS K G+ ++GP G GK+T + L DP+ G++ +G +
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDI---------NT 401
Query: 250 ISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISV 309
+++ L + TV Q G ++ E R +E + +A
Sbjct: 402 VTRESLRKSIATV---------FQDAGLFNRSIRENIRLGRE-----GATDEEVYEA--- 444
Query: 310 KGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEI 369
K D+ILK DT+VG R +SGG+++RL I+ L +DE
Sbjct: 445 --AKAAAAHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAILKNAPILVLDEA 498
Query: 370 TNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHG 426
T+ LD T ++ I L + T I + T D ++ + +G+++ G
Sbjct: 499 TSALDVETEARVKNAIDALRK--NRTTFI--IAHRLSTVRNADLVLFLDQGRLIEKG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 46/237 (19%), Positives = 74/237 (31%), Gaps = 74/237 (31%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV 242
++ +L +VS + G L GP G GKST LK+L N P +G +
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVR-------- 68
Query: 243 PPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD----- 297
H VD + ++EV R K G V
Sbjct: 69 -------------HEG-----AWVDL------AQASPREVLEV--RRKTIGYVSQFLRVI 102
Query: 298 ---PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR------------- 341
++ + + +GV R A + R
Sbjct: 103 PRVSALEVVAEPLLERGVPREA--------------ARARARELLARLNIPERLWHLPPA 148
Query: 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI 398
SGG+++R+ + L +DE T LD++ ++ I + ALI
Sbjct: 149 TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA--RGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 332 DTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHI 391
DT + N + R SGG+++RL +++ + +DE T GLD T Q+++ I + +
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE--VL 145
Query: 392 TDSTALISLLQPAPETFDL-----FDDIILMAEGKIVYHG 426
D T + T L D I+ + GKI+ G
Sbjct: 146 KDKTLIWI-------THHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 57/271 (21%), Positives = 97/271 (35%), Gaps = 78/271 (28%)
Query: 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE--- 240
+ + VS L+ G+ ++G G GKST K L+G ++P+ +GE+ N + L
Sbjct: 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHPLHFGDY 82
Query: 241 ----------FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREK 290
F P TS I + +R D R + + E R
Sbjct: 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPE-----QRRKQIFETLRM-- 135
Query: 291 EAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKR 350
G++PD +Y +L + GQK+R
Sbjct: 136 -VGLLPD-------------------HANYYPHML------------------APGQKQR 157
Query: 351 LTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQL--------VHITDSTALISLLQ 402
+ ++ K + DE LD S Q+I + +L +++T +I +
Sbjct: 158 VALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHIS 217
Query: 403 PAPETFDLFDDIILMAEGKIVYHGPQDHVLA 433
D +++M EG++V G VLA
Sbjct: 218 ---------DQVLVMHEGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 980 LETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEPTTGLDARAAA 1037
E I + + L+ I G S RL +A+ L P ++ +DE T+ LDA A
Sbjct: 38 GEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEA 97
Query: 1038 IVMRAV------KNIVNTGRTIVCTIHQPSI----DIFEAFDELILLKTG 1077
+++ T++ T + + FD I+L
Sbjct: 98 LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 60/268 (22%), Positives = 107/268 (39%), Gaps = 74/268 (27%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALS--GNLDPSLKVTGEVSYNGYKLEEFVPP 244
L +VS + +T L+GP GCGKSTF++ L+ +L + ++ G+VS G E+ P
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG---EDIYEP 84
Query: 245 KTSAYISQNDLHIA-------EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
+ ++ + M++ + V + R G +
Sbjct: 85 DVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKK------------------- 125
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMI 357
D+D V+ L++ + D +D + A+ +SGGQ++RL +
Sbjct: 126 -DLDGV--------VENALRSAAL-----WDETSDRLKSPAL--SLSGGQQQRLCIARTL 169
Query: 358 VGPTKALFMDEITNGLDS-STA------------YQIIAC---IQQLVHITDSTALISLL 401
K + DE T+ LD STA Y I+ +QQ I+D T
Sbjct: 170 AVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTG----- 224
Query: 402 QPAPETFDLFDDIILMAEGKIVYHGPQD 429
F L ++I + + ++H P++
Sbjct: 225 ------FFLMGELIEFGQTRQIFHNPRE 246
|
Length = 258 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.001
Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 25/190 (13%)
Query: 869 FADRKLR-------LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIK 921
F D LR +L+ ++ + P ++G +GAGK+++++ L + +G I
Sbjct: 1237 FEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIM 1294
Query: 922 ISGYPKVQETFARVSGYCEQTDIHSP-NITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 980
I + TD+ +I + V+FS +R + S+ + E L
Sbjct: 1295 IDDCDVAKFGL---------TDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEAL 1345
Query: 981 ETIEL-DAIKDSLVGI-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
E + D I + G+ G S QR+ L++A L+ I+ +DE T +D R
Sbjct: 1346 ERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVR 1405
Query: 1035 AAAIVMRAVK 1044
+++ R ++
Sbjct: 1406 TDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 58/236 (24%), Positives = 96/236 (40%), Gaps = 45/236 (19%)
Query: 830 MTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVL 889
M + + R VL E L +AF + + A R L SL+ G
Sbjct: 1 MPHSDELDARDVLAVENLNIAFMQEQQKIA----------AVRNLSF------SLQRGET 44
Query: 890 TALMGVSGAGKT----TLMDVLAGRKTSGYVEGE-----------IKISGYPKVQETFAR 934
A++G SG+GK+ LM +L + G V+ + I++S Q
Sbjct: 45 LAIVGESGSGKSVTALALMRLL--EQAGGLVQCDKMLLRRRSRQVIELSEQSAAQ--MRH 100
Query: 935 VSG------YCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI 988
V G + E +P TV E + S +RL + + +L+ + +
Sbjct: 101 VRGADMAMIFQEPMTSLNPVFTVGEQIAES--IRLHQGASREEAMVEAKRMLDQVRIPEA 158
Query: 989 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
+ L P + LS R+R+ IA+ L P+++ DEPTT LD A +++ +K
Sbjct: 159 QTILSRYP--HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIK 212
|
Length = 623 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 19/155 (12%)
Query: 883 SLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFAR--VSGYCE 940
++ G A++G SGAGK+TL++++AG T G + ++G +R VS +
Sbjct: 21 TVERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 941 QTDIHSPNITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETI-ELDAIKDSLVGIPG 997
+ ++ ++TV +++ L L P ++N+ + + L I I+D L +PG
Sbjct: 79 ENNLF-SHLTVAQNI----GLGLNPGLKLNAAQREK-----LHAIARQMGIEDLLARLPG 128
Query: 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
LS QR+R+ +A LV I+ +DEP + LD
Sbjct: 129 --QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 43/203 (21%), Positives = 74/203 (36%), Gaps = 62/203 (30%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
LN +S + PG + +++GP G GK+T + ++G P G V + G L
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDL-------- 66
Query: 247 SAYISQNDLH-IAEM---------------TVRETVDFSARCQGVGSREETMMEVSRREK 290
+ H IA TV E ++ + + +S EK
Sbjct: 67 ----TGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALP-RDKSVFASLFFRLSAEEK 121
Query: 291 EAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKR 350
+ + + +L+ +GL AD + G +S GQK+
Sbjct: 122 D-------------------------RIEEVLETIGLADEADRLAGL-----LSHGQKQW 151
Query: 351 LTTGEMIVGPTKALFMDEITNGL 373
L G +++ K L +DE G+
Sbjct: 152 LEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 189 HVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL-KVTGEVSYNGYKLEE-FVPPKT 246
++ LK G + L+G G GKS A+ G L P L + +GE+ +G L + +
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 247 SAYISQN 253
A I QN
Sbjct: 64 IATIMQN 70
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS 224
+L+ VS LKPG++ LLGP G GKST ++ + G + P
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD 57
|
Length = 251 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.002
Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRK 1007
N+++ E++ F ++ K ++E +E+ L D+ VG P LS Q++
Sbjct: 1309 NMSIYENIKFGKEDATREDVKRACKFAAIDEFIES--LPNKYDTNVG-PYGKSLSGGQKQ 1365
Query: 1008 RLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTG-RTIVCTIHQ 1059
R+ IA L+ P I+ +DE T+ LD+ + ++ + + +I + +TI+ H+
Sbjct: 1366 RIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.002
Identities = 59/256 (23%), Positives = 95/256 (37%), Gaps = 68/256 (26%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
LN ++ + G + ++G GCGKS+ L AL +D KV G V G +VP +
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKGSV--AYVPQQ- 707
Query: 247 SAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKA 306
A+I QND ++RE + F + ++E + I+P D
Sbjct: 708 -AWI-QND------SLRENILFG--KALNEKYYQQVLEACALLPDLEILPSGD----RTE 753
Query: 307 ISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFM 366
I KGV +SGGQK+R++ +
Sbjct: 754 IGEKGVN-----------------------------LSGGQKQRVSLARAVYSNADIYLF 784
Query: 367 DEITNGLDSSTAYQIIACI---------QQLVHITDSTALISLLQPAPETFDLFDDIILM 417
D+ + +D+ I + + + +T IS L P+ D II+M
Sbjct: 785 DDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHG---ISYL---PQV----DVIIVM 834
Query: 418 AEGKIVYHGPQDHVLA 433
+ GKI G +L
Sbjct: 835 SGGKISEMGSYQELLQ 850
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 1001 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQP 1060
LS +++RL A L+ P +F+DE T+ LD + + + +K + G T++ H+P
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRP 148
Query: 1061 SIDIFEAFDELILLKTGGRI 1080
S+ F D ++ L G
Sbjct: 149 SLWKF--HDRVLDLDGEGGW 166
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 1000 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVC 1055
LS +++ +A+ L + + +DE GLD R + A+ + G ++
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136
Query: 1056 TIHQPSIDIFEAFDELI 1072
H P ++ E D+LI
Sbjct: 137 ITHLP--ELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 0.002
Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 43/187 (22%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKIS-GYPKVQETFARV 935
L D++ S PG ++G++GAGK+TL+ ++AG EGE + + G KV
Sbjct: 23 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPGI-KV------- 72
Query: 936 SGYCEQTDIHSPNITVEESV------IFSAWLRLAPEINSK---TKAEFVNEVLETI--- 983
GY Q P TV E+V + +A R EI + A+F + +
Sbjct: 73 -GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFN-EIYAAYAEPDADF-DALAAEQGEL 129
Query: 984 --ELDAIK----DSLVGI--------PG---VNGLSTEQRKRLTIAVELVANPSIIFMDE 1026
+DA DS + I P V LS +R+R+ + L+ P ++ +DE
Sbjct: 130 QEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDE 189
Query: 1027 PTTGLDA 1033
PT LDA
Sbjct: 190 PTNHLDA 196
|
Length = 556 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 14/129 (10%), Positives = 50/129 (38%), Gaps = 5/129 (3%)
Query: 1258 MYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFC 1317
+ +Y +L + +P +++ ++ + I + + F +
Sbjct: 68 LREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALF--REREFGTLERLLV 125
Query: 1318 TMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTS 1377
+ + + L +LL + P ++AS+++ + + G + + + ++ +
Sbjct: 126 SPV--SRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLAT 182
Query: 1378 WALNAMVTS 1386
AL ++++
Sbjct: 183 VALGLLLST 191
|
Length = 286 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 19/158 (12%)
Query: 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARV 935
+L ++ + G + A+ G +G+GKT+L+ ++ G EG+IK SG R+
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS--EGKIKHSG---------RI 100
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLV-G 994
S + Q P T++E++IF S KA ++ E I KD+ V G
Sbjct: 101 S-FSSQFSWIMPG-TIKENIIFGVSYD-EYRYKSVVKA---CQLEEDITKFPEKDNTVLG 154
Query: 995 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
G+ LS QR R+++A + + + +D P LD
Sbjct: 155 EGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (96), Expect = 0.003
Identities = 54/242 (22%), Positives = 94/242 (38%), Gaps = 46/242 (19%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALSGNLDPS---LKVTGEVSYNGYKLEEFVP--PKTSA 248
+K G T L+G G GKST L+ L+G L P+ + V V + K +E P K
Sbjct: 29 VKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGV 88
Query: 249 YISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAIS 308
+ + E TV + V F + G+ +E+ EK A + +
Sbjct: 89 VFQFPESQLFEETVLKDVAFGPQNFGI-PKEKA-------EKIAA-----------EKLE 129
Query: 309 VKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDE 368
+ G+ ++ SGGQ +R+ ++ + L +DE
Sbjct: 130 MVGLADEFWEKSPFEL-------------------SGGQMRRVAIAGILAMEPEVLVLDE 170
Query: 369 ITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHG-P 427
T GLD +++ + + + L++ L + D D + L+ +G I+ G P
Sbjct: 171 PTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM--DDVADYADYVYLLEKGHIISCGTP 228
Query: 428 QD 429
D
Sbjct: 229 SD 230
|
Length = 288 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 60/270 (22%), Positives = 105/270 (38%), Gaps = 65/270 (24%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG---YKLEEF-- 241
+N S ++ G + +++G G GKST ++ L+ ++P+ GE+ +G KL
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAEL 100
Query: 242 --VPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPD 299
+ K + + Q+ + TV E V F QGV E RE+ A
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAE--------REERA------- 145
Query: 300 IDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVG 359
L+++GL+ AD +SGG ++R+ +
Sbjct: 146 -------------------LEALELVGLEGYADKYPNE-----LSGGMQQRVGLARALAN 181
Query: 360 PTKALFMDEITNGLDSSTAYQIIACIQ-QLVHITDSTA--LISLLQPAPETFDLFDDIIL 416
L MDE + LD I +Q +L+ + ++ + E + D I +
Sbjct: 182 DPDILLMDEAFSALDP----LIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAI 237
Query: 417 MAEGKIVYHG-PQ--------DHVLAFFED 437
M +G+IV G P+ D+V F +
Sbjct: 238 MKDGEIVQVGTPEEILLNPANDYVRDFVRN 267
|
Length = 386 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 200 TLLLGPPGCGKSTFLKALSGNLD--PSLKVTGEVSYNG 235
T +GP GCGKSTFL+ L+ D +VTG+++ +G
Sbjct: 48 TAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85
|
Length = 267 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 8/96 (8%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
K + +L + L G + LLG G GKST +K ++G + P +G + G
Sbjct: 18 SKQYSG-VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGN 73
Query: 237 KLEEFVPPKTSAY----ISQNDLHIAEMTVRETVDF 268
P K + Q L ++V+E + F
Sbjct: 74 PCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILF 109
|
Length = 510 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.003
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLE 239
IL+ VS ++PG ++GP G GKST L+ L G P +G V Y+G L
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP---ESGSVFYDGQDLA 518
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 16/97 (16%)
Query: 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI--- 398
+SGGQ++RL +V + L DE T+ LD+ T + +++L T ++
Sbjct: 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAH 643
Query: 399 --SLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLA 433
S ++ A D I ++ G++V G D ++A
Sbjct: 644 RLSTIRNA-------DRIYVLDAGRVVQQGTYDELMA 673
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 61/302 (20%), Positives = 112/302 (37%), Gaps = 78/302 (25%)
Query: 175 SGYKSLEAKINI-------LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKV 227
+ KS K+N L +++ ++ ++T L+GP GCGKSTFL+ + ++
Sbjct: 13 TQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFN-------RM 65
Query: 228 TGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSR 287
N Y+ E + P +S + + VR M +S
Sbjct: 66 HDLYPGNHYEGEIILHPDNVNILSPE---VDPIEVR-------------------MRISM 103
Query: 288 REKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG----- 342
++ P + + ++GVKR IL + V NA+R
Sbjct: 104 VFQKPNPFPKSIFENVAYGLRIRGVKRR-------SIL------EERVENALRNAALWDE 150
Query: 343 -----------ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLV-H 390
+SGGQ++RL + + L DE T+ LD A I++L+
Sbjct: 151 VKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIAT----ASIEELISD 206
Query: 391 ITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSD 450
+ + ++ + + + D M G+++ G D + F P+ K D
Sbjct: 207 LKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI--------FIKPKNKQTED 258
Query: 451 FL 452
++
Sbjct: 259 YI 260
|
Length = 265 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.003
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 197 GRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVS 232
G+ ++L G G GKST L AL LD L+ TGE+S
Sbjct: 35 GKTSVLAGQSGVGKSTLLNALLPELD--LR-TGEIS 67
|
Length = 161 |
| >gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24 | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 195 KPGRMTLLLGPPGCGKSTFLKALSGNLDPSLK-----VTGEVSYNGYKLEEFVPPKTSAY 249
P R+ L+ GP GCGKST +K LS L ++ + N +K+ + S +
Sbjct: 108 APKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNF 167
Query: 250 ISQ 252
SQ
Sbjct: 168 QSQ 170
|
All proteins in this family for which functions are known are involved in DNA damage tolerance (likely cell cycle checkpoints).This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 637 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.003
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 23/150 (15%)
Query: 890 TALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISG---YPKVQETF----ARVSGYCEQT 942
TA+ G SGAGKT+L++ ++G +G I ++G + + R GY Q
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQ--KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQD 84
Query: 943 DIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLS 1002
P+ V + LR + A+F V L I+ L PG LS
Sbjct: 85 ARLFPHYKVRGN------LRYG--MAKSMVAQFDKIV----ALLGIEPLLDRYPG--SLS 130
Query: 1003 TEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
+++R+ I L+ P ++ MDEP LD
Sbjct: 131 GGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.004
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLE 239
L+ VS ++ G + LLG G GKST +K LSG P +GE+ +G ++
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVS 65
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+ + +S L G + GP G GK+T L+ L+G P G V NG L+
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSI 71
Query: 246 TSA--YISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEV 285
Y+ ++V E + F EE + V
Sbjct: 72 ARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARV 113
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 47/208 (22%), Positives = 83/208 (39%), Gaps = 50/208 (24%)
Query: 176 GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG 235
GY S + + L++++ + G++T+++G GCGKS+ L A+ G + + G+V ++
Sbjct: 6 GYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSN 62
Query: 236 YKLEEFVPPKTS-------AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRR 288
E T AY +Q + TV E + F + R + + +
Sbjct: 63 KNESEPSFEATRSRNRYSVAYAAQKPW-LLNATVEENITFGSPFN--KQRYKAVTDACSL 119
Query: 289 EKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI--SGG 346
+ PDID L T +G RGI SGG
Sbjct: 120 Q--------PDIDL------------------------LPFGDQTEIG---ERGINLSGG 144
Query: 347 QKKRLTTGEMIVGPTKALFMDEITNGLD 374
Q++R+ + T +F+D+ + LD
Sbjct: 145 QRQRICVARALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.004
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 19/82 (23%)
Query: 202 LLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIA--- 258
L+G G GKST L+ L+G P +G V+ G + S+ + L
Sbjct: 53 LIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRG---------RVSSLL---GLGGGFNP 97
Query: 259 EMTVRETVDFSARCQGVGSREE 280
E+T RE + + R G+ SR+E
Sbjct: 98 ELTGRENIYLNGRLLGL-SRKE 118
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 43/181 (23%), Positives = 66/181 (36%), Gaps = 45/181 (24%)
Query: 194 LKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQN 253
+ G L+ G G GK+T L+ L+G L +G++ +G + AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHL 90
Query: 254 DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVK 313
A+++ E + F G RR K+ +P
Sbjct: 91 PGLKADLSTLENLHFLCGLHG------------RRAKQ---MPGS--------------- 120
Query: 314 RTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGL 373
L I+GL DT+V R +S GQKKRL + + P +DE L
Sbjct: 121 -------ALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168
Query: 374 D 374
D
Sbjct: 169 D 169
|
Length = 214 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 193 ILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL 225
+PG++ +LGP G GKST LK L+G L P+L
Sbjct: 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNL 128
|
Length = 591 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1449 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-252 Score=2329.46 Aligned_cols=1342 Identities=51% Similarity=0.873 Sum_probs=1255.3
Q ss_pred cchhhhhhHHHHhhCCchhhhhhccccccCCCCcccCCCceeecccCCChhhhhHHHHHHHhhhccchHHHHHHHHHHHh
Q 000517 48 TDVEHALLWAEIERLPTYDRLKASLFDVNSHGNLVDNQGKLVIDVTKLGALERHVFIEKLIKHIEHDNLQLLWKIRKRVD 127 (1449)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (1449)
+||||+|||||+|||||++| +++.+..++ ++|+.+++..+++.++++..+..++|+++++.++|+|+|
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~~---------~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~ 79 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFES---------EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERID 79 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhccC---------cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcC
Confidence 45999999999999999999 665432111 499999999999999999999999999999999999999
Q ss_pred hcCCCCCCceEEEeeeEEEEEeeecCCCCCCCchhhhhhhhhccccccCccccccccccccceeeEEeCCeEEEEEcCCC
Q 000517 128 KVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPG 207 (1449)
Q Consensus 128 ~~g~~~p~v~v~~~~L~v~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~G 207 (1449)
++ ++|.++++++++.+++++ ..| ||++|...+.++......+.. ++.+..||+|+||.++||+|++++||||
T Consensus 80 ~~--~~p~~~~~~~~~gv~a~~-~~~----~t~~n~~~~~~~~~~~~~~~~-~~~~~~il~~~sg~~~pg~m~lvLG~pg 151 (1391)
T KOG0065|consen 80 RV--ELPTIEVRFSALGVEADV-TYG----PTLVNILSNPLESILRMLGKR-KKKKIQILKDISGIIKPGEMTLVLGPPG 151 (1391)
T ss_pred cc--cCCceEEEeeeccccccc-ccc----hhhhhhhhhHHHHHhhhcccc-ccccceeecCcceeEcCCceEEEecCCC
Confidence 98 899999999999999999 444 999999999888766555433 4456789999999999999999999999
Q ss_pred CcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHccCCCCchhhhhHhcH
Q 000517 208 CGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSR 287 (1449)
Q Consensus 208 sGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~ 287 (1449)
|||||||++|+|.++...+..|+|+|||++.+++.+++.++|++|+|.|+|+|||||||+|+++|++++.+++ +++|
T Consensus 152 sG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R 228 (1391)
T KOG0065|consen 152 SGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSR 228 (1391)
T ss_pred CchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccH
Confidence 9999999999999998777789999999999999999999999999999999999999999999999998876 6667
Q ss_pred HHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCChhhhhhHHHHHHHhCCCcEEEEe
Q 000517 288 REKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMD 367 (1449)
Q Consensus 288 ~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLD 367 (1449)
+|+++ ..+|++++++||++|+||+|||++.||+||||||||+||+++++++++++||
T Consensus 229 ~e~~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 229 REKLA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred HHHHH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 76642 2579999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCC
Q 000517 368 EITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKG 447 (1449)
Q Consensus 368 EPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~ 447 (1449)
|+|+||||+|+.+|+++||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.||++++
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcChhhHhHHHHhcCcccCCCCCCCccccCcccccHHHHHHHH
Q 000517 448 VSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKAC 527 (1449)
Q Consensus 448 ~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l 527 (1449)
+|||++++++++++.++|..++.|+.+.++.++++.|.+++.++++..+++.++++.+.++.+...++|.+++|+|+++|
T Consensus 366 ~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c 445 (1391)
T KOG0065|consen 366 TADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKAC 445 (1391)
T ss_pred HHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhhhHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHh
Q 000517 528 MSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQ 607 (1449)
Q Consensus 528 ~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~ 607 (1449)
+.|++++++||.+++++++++.+++|+++|++|+++.+ .+..++..+.|++||++++.++++++++++.++++|+|+||
T Consensus 446 ~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~-~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Kh 524 (1391)
T KOG0065|consen 446 TIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM-STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKH 524 (1391)
T ss_pred HHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC-cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHh
Confidence 99999999999999999999999999999999999885 44447889999999999999999999999999999999999
Q ss_pred hcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Q 000517 608 QELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMT 687 (1449)
Q Consensus 608 r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l~l~l~~~~~~sl~~~i~a~~~~~~~a~~ 687 (1449)
|+..||++|+++++.+++++|..++++.+|.+|+||++|+.+++++||++++++++.++++.++|++++++++++..|++
T Consensus 525 r~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~ 604 (1391)
T KOG0065|consen 525 RDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANL 604 (1391)
T ss_pred hcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHHHHHHhhcCCccccc------------CCC----Cccchh
Q 000517 688 AGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRWQKM------------LPT----NTTIGQ 751 (1449)
Q Consensus 688 ~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~------------~~~----~~~~G~ 751 (1449)
+|++.++++++++||+|++++||+||+|++|++|++|+++++++|||++.+|.|. ... ..+.|.
T Consensus 605 ~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~ 684 (1391)
T KOG0065|consen 605 IGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGN 684 (1391)
T ss_pred HhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCc
Confidence 9999999999999999999999999999999999999999999999999999997 111 346799
Q ss_pred hhhccCCcc-----cccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccchhhhhhhcccccCCCCCCcccCCC
Q 000517 752 EILESRGLN-----FDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSR 826 (1449)
Q Consensus 752 ~~L~~~g~~-----~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 826 (1449)
++++.+++. ....|+|+++|+++||+++|++.+++++.|+++..+.+.++..++..++..... .......+.
T Consensus 685 ~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~-- 761 (1391)
T KOG0065|consen 685 DYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKS-AGSSSEIEK-- 761 (1391)
T ss_pred eEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchh-ccccccccc--
Confidence 999999887 788899999999999999999999999999999988888876655433221110 000000000
Q ss_pred CCCCCCcccccCCccccCCCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhh
Q 000517 827 STPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDV 906 (1449)
Q Consensus 827 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~ 906 (1449)
....+...+++++.++.+.+++++||.|.+++|-+++.+| +++++|+|||+.++||.++||||+||||||||||+
T Consensus 762 --~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdv 836 (1391)
T KOG0065|consen 762 --LDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDV 836 (1391)
T ss_pred --cccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHH
Confidence 0011111356788899999999999999999998887666 67889999999999999999999999999999999
Q ss_pred hcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc
Q 000517 907 LAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD 986 (1449)
Q Consensus 907 L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~ 986 (1449)
||||++.|.++|+|.+||.|.+++.++|.+|||+|+|.|.+.+||+|.|.|+|+||++.+++.+++.++|+++++.++|+
T Consensus 837 LA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~ 916 (1391)
T KOG0065|consen 837 LAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK 916 (1391)
T ss_pred HhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHH
Q 000517 987 AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP-SIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIF 1065 (1449)
Q Consensus 987 ~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p-~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~ 1065 (1449)
+++|.+||.|| +|||++|||||+||++|++|| .||||||||||||++++..|++.+|+++++|+|||||+||||.+++
T Consensus 917 ~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~if 995 (1391)
T KOG0065|consen 917 EYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIF 995 (1391)
T ss_pred hhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHH
Confidence 99999999999 899999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HhcCeEEEEecCcEEEEecCCCCChhHHHHHHhcCCCCCCCCCCCCCCcceeeccCchhhhhhhhHHHHHHHhcHHHHHH
Q 000517 1066 EAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQIFRESVLYENN 1145 (1449)
Q Consensus 1066 ~~~d~~~~l~~gG~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~ 1145 (1449)
+.||++++|++||++||+||+|++++++++||++++|++ |++..||||||||+++.+.+...+.||++.|++|++|+++
T Consensus 996 e~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~ 1074 (1391)
T KOG0065|consen 996 EAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRN 1074 (1391)
T ss_pred HHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHH
Confidence 999999999999999999999999999999999998885 5555699999999999998888889999999999999999
Q ss_pred HHHHHhhCCCCCC-CCCCCCCCccCcchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhh
Q 000517 1146 RELVKQLNTPPPG-SKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQD 1224 (1449)
Q Consensus 1146 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~ 1224 (1449)
+++++++++++++ +.+..++++|++|+|.|++.|+||++++|||+|+|+++|++++++.||++|++||++|+ ++||
T Consensus 1075 ~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~ 1151 (1391)
T KOG0065|consen 1075 KELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQG 1151 (1391)
T ss_pred HHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHH
Confidence 9999999999998 78888899999999999999999999999999999999999999999999999999994 6899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHhhHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 000517 1225 LFNIVGSSYLAVVFLGINNCSSVIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWS 1304 (1449)
Q Consensus 1225 ~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~m~g~~~~ 1304 (1449)
++|.+|++|+++++.+..++..++|.+..||.++|||+++||||+.||++||+++|+||.++++++|++|+|+|+||+++
T Consensus 1152 lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~ 1231 (1391)
T KOG0065|consen 1152 LQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWT 1231 (1391)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhh
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhCHHHHHHHHHH
Q 000517 1305 AYKLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWALNAMV 1384 (1449)
Q Consensus 1305 ~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~ 1384 (1449)
+.+|+||+++++++.+|++++|||+++++||.++|+++++++++++++||||++|++.||.||+||||+||++|.++|++
T Consensus 1232 a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli 1311 (1391)
T KOG0065|consen 1232 ASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLI 1311 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccceeecC-------CCccHHHHHHhhcC----CccCChhhhHHHHHHHHHHHHHHHHHHHHhccccCC
Q 000517 1385 TSQYGDIDKEMIVFG-------ETKKLSSFIQDYFG----FHHDRLPITAAVLIIYPLVLAFLFAFCIERLNFLRR 1449 (1449)
Q Consensus 1385 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g----~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1449 (1449)
..++||.+..|...+ .+.|+++|+++++| |.+|.......+..+|.+++.+++.+++|+.|+|||
T Consensus 1312 ~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1312 SSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred HHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 999999988775433 23799999999999 999999888888899999999999999999999987
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-238 Score=2363.34 Aligned_cols=1426 Identities=55% Similarity=0.979 Sum_probs=1276.3
Q ss_pred hhcccccccCCCCCcc--cccccccC-C-C---CCcchhhhhhHHHHhhCCchhhhhhccccccCCCCcccC--CCceee
Q 000517 20 IGRSLRSSFRLPTSSY--RSSSAISS-R-K---EDTDVEHALLWAEIERLPTYDRLKASLFDVNSHGNLVDN--QGKLVI 90 (1449)
Q Consensus 20 ~~~~~~~~~~~~~~~~--~~~~~~~~-~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 90 (1449)
++|+++++.. +++| +++|++.+ + + ..|||||+|+|||+||||||+|+|++++.+..+|+..+. ..+ ++
T Consensus 8 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 84 (1470)
T PLN03140 8 MRRSISRSVS--RSSRNMEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHK-EV 84 (1470)
T ss_pred HHHHHHHHhh--hhhhhhhhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhccccccccccccccc-cc
Confidence 3455555443 5567 78886532 2 1 367899999999999999999999999954311111001 122 59
Q ss_pred cccCCChhhhhHHHHHHHhhhccchHHHHHHHHHHHhhcCCCCCCceEEEeeeEEEEEeeecCCCCCCCchhhhhhhhhc
Q 000517 91 DVTKLGALERHVFIEKLIKHIEHDNLQLLWKIRKRVDKVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISV 170 (1449)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~v~v~~~~L~v~~~~~~~~~~~~~t~~~~~~~~~~~ 170 (1449)
|+++|+.++++.+++++++++++|+++|++++++|+|++|+++|++||+|+||+|++++ .++++.+||++|.+.+.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~-~~~~~~~~t~~~~~~~~~~~ 163 (1470)
T PLN03140 85 DVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADC-YIGSRALPTLPNAARNIAES 163 (1470)
T ss_pred ccccCChHHHHHHHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEe-cCCcccCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 78999999999999998876
Q ss_pred cccccCc-cccccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEE
Q 000517 171 LPKLSGY-KSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAY 249 (1449)
Q Consensus 171 ~~~~~~~-~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~y 249 (1449)
.....+. .+++.+++||+|+||.++|||+++|+||||||||||||+|+|+++|+.+++|+|+|||+++++..+++.++|
T Consensus 164 ~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~y 243 (1470)
T PLN03140 164 ALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAY 243 (1470)
T ss_pred HHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEE
Confidence 5543332 233346789999999999999999999999999999999999999877789999999999887766788999
Q ss_pred EcCCCccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc
Q 000517 250 ISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV 329 (1449)
Q Consensus 250 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~ 329 (1449)
|+|+|.|++++||+|||.|+++|++.+.+.++..+.+++++++++.|+.++|.|||+....+.+.+..++++|+.+||++
T Consensus 244 v~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~ 323 (1470)
T PLN03140 244 ISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDI 323 (1470)
T ss_pred ecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCcc
Confidence 99999999999999999999999877665555566778888888888889999999988888888888999999999999
Q ss_pred cccccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHh
Q 000517 330 CADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFD 409 (1449)
Q Consensus 330 ~~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~ 409 (1449)
|+||.||+.+.|||||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++..++|+|+++|||.+++++
T Consensus 324 ~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~ 403 (1470)
T PLN03140 324 CKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFD 403 (1470)
T ss_pred ccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887789999999999999999
Q ss_pred hcCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcChh
Q 000517 410 LFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPL 489 (1449)
Q Consensus 410 ~fD~v~lL~~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 489 (1449)
+||+|++|++|+++|+||++++.+||+++||+||+++|+|||+++++++++++++|.....|+++.++++++++|++++.
T Consensus 404 lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~ 483 (1470)
T PLN03140 404 LFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHV 483 (1470)
T ss_pred HhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHH
Confidence 99999999999999999999999999999999999999999999999998888888776778888899999999999999
Q ss_pred hHhHHHHhcCcccCCCCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccc
Q 000517 490 VKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDV 569 (1449)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~ 569 (1449)
++.+.+++..+.+++..++.....+.|..++|+|+++|++|++++++||+..+++++++.+++|+++|++|++++++...
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~ 563 (1470)
T PLN03140 484 GMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRN 563 (1470)
T ss_pred HHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 88888887776666555665566678999999999999999999999999999999999999999999999998765433
Q ss_pred -cchhhhhHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCc
Q 000517 570 -FHGNYYMGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYS 648 (1449)
Q Consensus 570 -~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~ 648 (1449)
.+++.+.|++||++++.++++++++++++.++|+|+|||+.+||++|+|+++++++++|+.++++++|++++|||+|+.
T Consensus 564 ~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~ 643 (1470)
T PLN03140 564 EEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFA 643 (1470)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCC
Confidence 3677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHH
Q 000517 649 PEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIG 728 (1449)
Q Consensus 649 ~~~~~f~~~~l~l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~a 728 (1449)
+++++||.+++++++.++++.++|++++++++++.+|+.+++++++++++|+||++++++||+||+|++|+||++|++++
T Consensus 644 ~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~ea 723 (1470)
T PLN03140 644 PEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNA 723 (1470)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcccccC--CCCccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccchhhh
Q 000517 729 LSVNEFLAPRWQKML--PTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKL 806 (1449)
Q Consensus 729 l~~nef~~~~~~~~~--~~~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~~~~~~~~~~s~~~~ 806 (1449)
+++|||.+.+|.+.. .+..+.|+.+|+.+|+..++.|+|++++++++++++|+++++++|++.++..+.....+.+..
T Consensus 724 l~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~ 803 (1470)
T PLN03140 724 LAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETA 803 (1470)
T ss_pred HHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccch
Confidence 999999998886432 224578999999999999899999999999999999999999999999866555444332221
Q ss_pred hhhcccc----------cCCC---CC---Cc-ccC----CCCC-CCCCcccccCCccccCCCcEEEEecceeeeecccch
Q 000517 807 AKMQESE----------DSSY---GE---PV-KEN----SRST-PMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEM 864 (1449)
Q Consensus 807 ~~~~~~~----------~~~~---~~---~~-~~~----~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 864 (1449)
.+..... +... .. +. ... .... .........+++.+|+.|++++|+|++|+|+.+.+.
T Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~ 883 (1470)
T PLN03140 804 EEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEM 883 (1470)
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccc
Confidence 1100000 0000 00 00 000 0000 000011223456788999999999999999988877
Q ss_pred hccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCC
Q 000517 865 RERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDI 944 (1449)
Q Consensus 865 ~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~ 944 (1449)
++.+..++++++|+|||++++|||++||||||||||||||++|+|+.++|..+|+|.+||.+.....+++.+|||+|+|.
T Consensus 884 ~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~ 963 (1470)
T PLN03140 884 KEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDI 963 (1470)
T ss_pred cccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccc
Confidence 66666666778999999999999999999999999999999999998766789999999988655556778999999999
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000517 945 HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 1024 (1449)
Q Consensus 945 ~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illL 1024 (1449)
+++.+||+|+|.|++.+|.+.+.+.+++.++++++++.+||.+++|+.+|.+++++|||||||||+||++|+.+|+||||
T Consensus 964 ~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~L 1043 (1470)
T PLN03140 964 HSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFM 1043 (1470)
T ss_pred cCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEE
Confidence 99999999999999988876655666677889999999999999999999888889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCCChhHHHHHHhcCCCCC
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVP 1104 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~~~~~~~~~f~~~~~~~ 1104 (1449)
||||||||+.++..+++.|++++++|+|||||+|||+.++++.||++++|++||+++|+||.+++++++++||++++|.|
T Consensus 1044 DEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~ 1123 (1470)
T PLN03140 1044 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVP 1123 (1470)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCC
Confidence 99999999999999999999999889999999999998889999999999878999999999988889999999998888
Q ss_pred CCCCCCCCCcceeeccCchhhhhhhhHHHHHHHhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCcchHHHHHHHHHHHH
Q 000517 1105 KIRNNYNPATWVIEVTSTSAEAELCVDFAQIFRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLH 1184 (1449)
Q Consensus 1105 ~~~~~~npa~~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~ 1184 (1449)
+||+++|||||++|+++.+.+.....||++.|++|++++++++.++++..+.++.++..++++|++|+|+|+++|+||++
T Consensus 1124 ~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~ 1203 (1470)
T PLN03140 1124 KIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQW 1203 (1470)
T ss_pred CCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHH
Confidence 89999999999999998766655667999999999999999888888877766666666678899999999999999999
Q ss_pred HHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHhhHHHHHHccC
Q 000517 1185 LSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARERTVMYREGFA 1264 (1449)
Q Consensus 1185 ~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~ 1264 (1449)
+++||||.|+++|+++++++|+++|++||+++++..+++++++++|++|++++|+++.++++++|.+..||+||+|||++
T Consensus 1204 ~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~ 1283 (1470)
T PLN03140 1204 WTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAA 1283 (1470)
T ss_pred HHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999887778999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 000517 1265 GMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILSS 1344 (1449)
Q Consensus 1265 ~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~ 1344 (1449)
|+|++++|++|++++|+|+.++++++|++|+|||+||++++.+||||+++++++.++++++|+++++++||.++|+++++
T Consensus 1284 ~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~ 1363 (1470)
T PLN03140 1284 GMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAA 1363 (1470)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCCCcchhhhhhhhhCHHHHHHHHHHHHHhCCCccceeecC--CCccHHHHHHhhcCCccCChhhh
Q 000517 1345 VCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWALNAMVTSQYGDIDKEMIVFG--ETKKLSSFIQDYFGFHHDRLPIT 1422 (1449)
Q Consensus 1345 ~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~ 1422 (1449)
+++++|++||||++|+++||+||+|+||+||++|+++||++|||+|.+.+|.++| ...++++|++++|||+++++|++
T Consensus 1364 ~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 1443 (1470)
T PLN03140 1364 AFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPV 1443 (1470)
T ss_pred HHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccch
Confidence 9999999999999999999999999999999999999999999999988777776 23689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCC
Q 000517 1423 AAVLIIYPLVLAFLFAFCIERLNFLRR 1449 (1449)
Q Consensus 1423 ~~il~~~~~~f~~~~~~~l~~~~~~~r 1449 (1449)
++++++|+++|++++++++|++|||||
T Consensus 1444 ~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1444 AAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999999999999999999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-186 Score=1872.02 Aligned_cols=1282 Identities=30% Similarity=0.518 Sum_probs=1062.6
Q ss_pred ccchHHHHHHHHHHHhhcCCCCC--CceEEEeeeEEEEEeeecCCCCCCCchhhhhhhhhccccccCccccccccccccc
Q 000517 112 EHDNLQLLWKIRKRVDKVGIKLP--TIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNH 189 (1449)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~p--~v~v~~~~L~v~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 189 (1449)
+.|++++++.++++.++.+...| +++|+|+||+|++.. .+....||++|.+.+..........-++++.+++||+|
T Consensus 2 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 79 (1394)
T TIGR00956 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA--ADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKP 79 (1394)
T ss_pred CCCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEEEe--ccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeC
Confidence 36788888877777777776666 999999999999944 55567899999887766522211111223345779999
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC-CeeeEEEECCccCCCCC--CCceEEEEcCCCccCCCCCHHHHH
Q 000517 190 VSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL-KVTGEVSYNGYKLEEFV--PPKTSAYISQNDLHIAEMTVRETV 266 (1449)
Q Consensus 190 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~-~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l 266 (1449)
||+.++|||+++|+||||||||||||+|+|+.++.. ..+|+|.+||+++++.. .++.++||+|+|.|++++||+|||
T Consensus 80 vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l 159 (1394)
T TIGR00956 80 MDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETL 159 (1394)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHH
Confidence 999999999999999999999999999999974321 24999999999875432 245699999999999999999999
Q ss_pred HHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCChh
Q 000517 267 DFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGG 346 (1449)
Q Consensus 267 ~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlSGG 346 (1449)
.|+++++.+..... ...++++ .+...+.+++.+||++++||+||+...||||||
T Consensus 160 ~f~~~~~~~~~~~~---~~~~~~~-----------------------~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 213 (1394)
T TIGR00956 160 DFAARCKTPQNRPD---GVSREEY-----------------------AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGG 213 (1394)
T ss_pred HHHHHhCCCCCCCC---CCCHHHH-----------------------HHHHHHHHHHHcCcccccCceeCCCcCCCCCcc
Confidence 99988764321100 0111111 011246689999999999999999999999999
Q ss_pred hhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEEEec
Q 000517 347 QKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHG 426 (1449)
Q Consensus 347 qrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv~~G 426 (1449)
|||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..++|+|+++|||+++++++||+|++|++|+++|+|
T Consensus 214 erkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G 293 (1394)
T TIGR00956 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293 (1394)
T ss_pred cchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEEC
Confidence 99999999999999999999999999999999999999999987668999999999999999999999999999999999
Q ss_pred ChhhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcChhhHhHHHHhcCcccCC--
Q 000517 427 PQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLVPYDKS-- 504 (1449)
Q Consensus 427 ~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-- 504 (1449)
+++++.+||+++||+||++.|+|||+++++++.++ +++...+. ....+++++++.|++++.++++.++++.+.++.
T Consensus 294 ~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 371 (1394)
T TIGR00956 294 PADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGYEK-KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSE 371 (1394)
T ss_pred CHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccccc-cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999987543 22222111 123578899999999987776666554322110
Q ss_pred -------------CCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccccc
Q 000517 505 -------------KSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFH 571 (1449)
Q Consensus 505 -------------~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~ 571 (1449)
...+.....+.|..++|+|++.|++|+++.++||+..+..++++.+++|+++|++|++.+ .+..+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~--~~~~~ 449 (1394)
T TIGR00956 372 SDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLP--KNTSD 449 (1394)
T ss_pred hhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCC--CCchh
Confidence 001112234568889999999999999999999999999999999999999999999765 34446
Q ss_pred hhhhhHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccH
Q 000517 572 GNYYMGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEV 651 (1449)
Q Consensus 572 ~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~ 651 (1449)
.+.+.|++||++++.++.++.+++.++.+|++|+|||..++|++++|+++++++++|+.++.+++|++++|||+|+.+++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 77889999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHHHHH
Q 000517 652 WRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSV 731 (1449)
Q Consensus 652 ~~f~~~~l~l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 731 (1449)
.+|+.+++++++.++++.++++++++++++...|+.+++++++++++|+||++++++||+||+|++|+||+.|++++++.
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcccccC--C-----------C------------CccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHH
Q 000517 732 NEFLAPRWQKML--P-----------T------------NTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTL 786 (1449)
Q Consensus 732 nef~~~~~~~~~--~-----------~------------~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~l 786 (1449)
|||.+..+.|.. | + ..+.|+++|+. ++.....|+|.+++++++++++|.+++++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l 688 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYIL 688 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999998887741 1 0 12468888885 44455678999999999999999999999
Q ss_pred HHHhccccCCCccccchhhhhh----hcccccCC---CCCCcccCC-CCCCCCCcc-cccCCccccCCCcEEEEecceee
Q 000517 787 ALTFLKSSGSSRVMISHEKLAK----MQESEDSS---YGEPVKENS-RSTPMTNKE-SYKGRMVLPFEPLTVAFQDLKYY 857 (1449)
Q Consensus 787 aL~~~~~~~~~~~~~s~~~~~~----~~~~~~~~---~~~~~~~~~-~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 857 (1449)
++++.++..........++... ....+.+. ..+...... ...+.+.+. ..............++|+|++|.
T Consensus 689 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~ 768 (1394)
T TIGR00956 689 LTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYE 768 (1394)
T ss_pred HHHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEEE
Confidence 9999885444322221111000 00000000 000000000 000000000 00000000011235789999987
Q ss_pred eecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC-eeEEEEEEcCccCccccccceE
Q 000517 858 VDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG-YVEGEIKISGYPKVQETFARVS 936 (1449)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~~~~ 936 (1449)
++.+ .+++.+|+|||++++|||++||||||||||||||++|+|+.+++ ..+|+|.+||.+.. ..+++.+
T Consensus 769 ~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~-~~~~~~i 838 (1394)
T TIGR00956 769 VKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD-SSFQRSI 838 (1394)
T ss_pred ecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-hhhhcce
Confidence 6422 23467999999999999999999999999999999999987644 35699999999864 3467889
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh
Q 000517 937 GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELV 1016 (1449)
Q Consensus 937 gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~ 1016 (1449)
|||+|+|.+++.+||+|+|.|++.+|.+.+.+.++++++++++++.++|.+++|+.+|.++. +|||||||||+||+||+
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHH
Confidence 99999999999999999999999888765556667778899999999999999999987654 79999999999999999
Q ss_pred hCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCCChhHHHH
Q 000517 1017 ANPS-IIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIE 1095 (1449)
Q Consensus 1017 ~~p~-illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~~~~~~~~ 1095 (1449)
.+|+ ||||||||||||+.++..+++.|++++++|+|||+|+|||+..+++.||++++|++||+++|+|++++.++++++
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~ 997 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIIN 997 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHH
Confidence 9997 999999999999999999999999998889999999999997778899999999987799999999988889999
Q ss_pred HHhcCCCCCCCCCCCCCCcceeeccCchhhhhhhhHHHHHHHhcHHHHHHHHHHHhhCCCCCCCC---CCCCCCccCcch
Q 000517 1096 YFEGISGVPKIRNNYNPATWVIEVTSTSAEAELCVDFAQIFRESVLYENNRELVKQLNTPPPGSK---DLHFPTRFSRNF 1172 (1449)
Q Consensus 1096 ~f~~~~~~~~~~~~~npa~~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 1172 (1449)
||+.+ |.++||+++|||||++|+++...+.....||.+.|++|+++++..+.++++..+..... +....++|++|+
T Consensus 998 yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 1076 (1394)
T TIGR00956 998 YFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASL 1076 (1394)
T ss_pred HHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCH
Confidence 99987 66689999999999999998655444456899999999988877666655433322111 111224789999
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhHHhhHH
Q 000517 1173 WGQFKSCLWKLHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVA 1252 (1449)
Q Consensus 1173 ~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~ 1252 (1449)
|+|+++|++|+++++||||.|+.+|+++++++|+++|++||++++ ++++++|++|++|+++++.++. +.+++|.|.
T Consensus 1077 ~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~ 1152 (1394)
T TIGR00956 1077 WYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPL-IQQYLPPFV 1152 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHH
Confidence 999999999999999999999999999999999999999999986 4789999999999988887776 456678888
Q ss_pred HhhHHH-HHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhH-------HHHHHHHHHHHHHHHHH
Q 000517 1253 RERTVM-YREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYK-------LFWNFYGMFCTMMFYNY 1324 (1449)
Q Consensus 1253 ~er~v~-~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~m~g~~~~~~~-------f~~~~~~~~~~~~~~~~ 1324 (1449)
.||.+| +|||++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++.. |++|+++++++.+++++
T Consensus 1153 ~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s 1232 (1394)
T TIGR00956 1153 AQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFST 1232 (1394)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHH
Confidence 888886 8999999999999999999999999999999999999999999988876 99999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhCHHHHHHHHHHHHHhCCCccceee-------
Q 000517 1325 LGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWALNAMVTSQYGDIDKEMIV------- 1397 (1449)
Q Consensus 1325 ~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~~------- 1397 (1449)
+|+++++++||..+|+.+++++++++++||||++|+++||+||+|+||+||++|+++|++.|||+|.+..|..
T Consensus 1233 ~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~ 1312 (1394)
T TIGR00956 1233 LGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFN 1312 (1394)
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceec
Confidence 9999999999999999999999999999999999999999999999999999999999999999998754421
Q ss_pred -c-C----------------------C---C-----ccHHHHHHhhcCCccCChhhhHHHHHHHHHHHHHHHHHHHHhc
Q 000517 1398 -F-G----------------------E---T-----KKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAFLFAFCIERL 1444 (1449)
Q Consensus 1398 -~-~----------------------~---~-----~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~ 1444 (1449)
| | . + .++.+|+. .+|+++++.|+|++++++|++++ +++++++.+.
T Consensus 1313 pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~-~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1313 PPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLE-PISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred CCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHH-HcCCcccccccchhhhhHHHHHH-HHHHHhhheE
Confidence 1 1 0 0 13445544 57999999999999999999988 8888888775
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-94 Score=914.70 Aligned_cols=584 Identities=24% Similarity=0.427 Sum_probs=487.6
Q ss_pred CCcEEEEecceeeeeccc----------------chhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhc
Q 000517 845 EPLTVAFQDLKYYVDTPL----------------EMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLA 908 (1449)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~ 908 (1449)
.++++.|.|++|.++... ..++..+.++++.+|+|||+++++||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 367899999999986542 1122233455678999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccc
Q 000517 909 GRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI 988 (1449)
Q Consensus 909 g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~ 988 (1449)
|+..++..+|+|.+||.+... ..++.+|||+|++.+++.+||+|++.|++.++.+.....++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 987654468999999987643 3345689999999999999999999999887765445555667789999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhc
Q 000517 989 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAF 1068 (1449)
Q Consensus 989 ~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~ 1068 (1449)
+|+.+|+...++||||||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999987788999999999999999999999999999999999999999999999998889999999999987789999
Q ss_pred CeEEEEecCcEEEEecCCCCChhHHHHHHhcCCCCCCCCCCCCCCcceeeccCchhhh---------hhhhHHHHHHHhc
Q 000517 1069 DELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAEA---------ELCVDFAQIFRES 1139 (1449)
Q Consensus 1069 d~~~~l~~gG~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~v~~~~~~~---------~~~~~~~~~~~~s 1139 (1449)
|++++|+ +|+++|.|+. +++.+||+++ |. +||+++|||||++|+++...+. .......+.|+++
T Consensus 275 D~iilL~-~G~iv~~G~~----~~~~~~f~~~-G~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLS-EGRCLFFGKG----SDAMAYFESV-GF-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEec-CCcEEEECCH----HHHHHHHHHC-CC-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 9999997 5899999997 6899999998 44 5999999999999998753210 0011233445432
Q ss_pred HHHHHHHHHHHhh--CC-CCC-----CCCCCC-CCCccCcchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHH
Q 000517 1140 VLYENNRELVKQL--NT-PPP-----GSKDLH-FPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIMHTATASLLFGV 1210 (1449)
Q Consensus 1140 ~~~~~~~~~~~~~--~~-~~~-----~~~~~~-~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~ 1210 (1449)
. .++..+..+.. .. +.+ ..+... ....+..+||+|+++|++|++++ |||+.++.+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111110 00 000 001000 11235678999999999999998 99999999999999999999999
Q ss_pred HhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHhhHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000517 1211 LFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALS 1290 (1449)
Q Consensus 1211 ~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~ 1290 (1449)
+||+++ ..+++++.|++|++++++++.+++.+++.|+.||+||+||+++|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999984 467999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred HhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhh
Q 000517 1291 YVIIGYPMIGYYWSAYKLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWM 1370 (1449)
Q Consensus 1291 ~~~i~Y~m~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~ 1370 (1449)
|++|+|||+|+++++.+||+|+++++++.++++++|+++++++||..+|+.++++++.++++||||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hhhCHHHHHHHHHHHHHhCCCcc-----ceeecCC-CccHHHHHHhhcCCccCChhhhHHHHHHHHHHHHHHHHHHHHhc
Q 000517 1371 YYMMPTSWALNAMVTSQYGDIDK-----EMIVFGE-TKKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAFLFAFCIERL 1444 (1449)
Q Consensus 1371 ~~isp~~y~~~~l~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~ 1444 (1449)
+|+||++|++++++.|||++... +|..+.. ......++. ..++++...|.++++|++|+++|++++|++|+++
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE-EDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch-hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999987542 2321110 001111222 2334455789999999999999999999999998
Q ss_pred cc
Q 000517 1445 NF 1446 (1449)
Q Consensus 1445 ~~ 1446 (1449)
||
T Consensus 658 ~~ 659 (659)
T PLN03211 658 KH 659 (659)
T ss_pred cC
Confidence 86
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-94 Score=902.85 Aligned_cols=579 Identities=31% Similarity=0.564 Sum_probs=504.2
Q ss_pred CCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC-eeEEEEEEc
Q 000517 845 EPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG-YVEGEIKIS 923 (1449)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~ 923 (1449)
.++.+.|+|+++..+.+.. ..+++|+|||++++|||++|||||||||||||||+|+|+...+ ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 4567899999988764421 3578999999999999999999999999999999999998764 689999999
Q ss_pred CccCccccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000517 924 GYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLST 1003 (1449)
Q Consensus 924 G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1003 (1449)
|++...+.+++.+|||+|+|.++|++||+|+|.|+|.+|++.+.+.++++++|+++++.+||.+++|+++|.++.+|+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98877788999999999999999999999999999999999888899999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEe
Q 000517 1004 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYC 1083 (1449)
Q Consensus 1004 GqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~ 1083 (1449)
||||||+||.+|+.||+||||||||||||+.++..+++.|+++|++|+|||||+|||+.+++++||++++|.+ |+++|+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985 899999
Q ss_pred cCCCCChhHHHHHHhcCCCCCCCCCCCCCCcceeeccCch--hhhhh----hhHHHHHHH-hcHHHHHHHHHHHhhCCCC
Q 000517 1084 GPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTS--AEAEL----CVDFAQIFR-ESVLYENNRELVKQLNTPP 1156 (1449)
Q Consensus 1084 G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~v~~~~--~~~~~----~~~~~~~~~-~s~~~~~~~~~~~~~~~~~ 1156 (1449)
|++ +++.+||+++ |. +||+++|||||++|+++.. .+... .....+.++ .+...+...+..+.+....
T Consensus 253 G~~----~~~~~ff~~~-G~-~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GF-PCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSK 326 (613)
T ss_pred cCH----HHHHHHHHhC-CC-CCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhccccc
Confidence 997 6899999998 55 4999999999999998842 11100 001111111 1111111100011111111
Q ss_pred CCCCCCCCCCccCcchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHH
Q 000517 1157 PGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAV 1236 (1449)
Q Consensus 1157 ~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~ 1236 (1449)
..+.....+||.|++.+++|.+++.+|||.+...|+++.+++|+++|++||+.+. +..+++++.|++|+.+
T Consensus 327 ------~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~~ 397 (613)
T KOG0061|consen 327 ------KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFIL 397 (613)
T ss_pred ------ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHHH
Confidence 1111127899999999999999999999999999999999999999999999975 4567779999999999
Q ss_pred HHHHHHHHHhHHhhHHHhhHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHH
Q 000517 1237 VFLGINNCSSVIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMF 1316 (1449)
Q Consensus 1237 ~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~ 1316 (1449)
.++.+..+...++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++...|++|+++++
T Consensus 398 ~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~ 477 (613)
T KOG0061|consen 398 SFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIIL 477 (613)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 99989888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhCHHHHHHHHHHHHHhCCCcccee
Q 000517 1317 CTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWALNAMVTSQYGDIDKEMI 1396 (1449)
Q Consensus 1317 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~ 1396 (1449)
+..+.++++|++++++.||...|..+++++...+++|+||+++.++||.||+|++|+|+++|++||++.|||++....|.
T Consensus 478 ~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~ 557 (613)
T KOG0061|consen 478 LSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCF 557 (613)
T ss_pred HHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997333332
Q ss_pred ecC--CC-ccHHHHHHhhcCCccCChhhhHHHHHHHHHHHHHHHHHHHHhccccC
Q 000517 1397 VFG--ET-KKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAFLFAFCIERLNFLR 1448 (1449)
Q Consensus 1397 ~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~ 1448 (1449)
..+ .+ .+..+ +...++++.+..|.++.++++++++|++++|++|++....+
T Consensus 558 ~~~~~~~~~~~~~-~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 558 LSGNLCCESTGED-VLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred cCcCCcccccHHH-HHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 111 11 34444 45668999999999999999999999999999999865443
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-94 Score=911.72 Aligned_cols=567 Identities=30% Similarity=0.495 Sum_probs=500.6
Q ss_pred ccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC-eeEEEEEEcCccCccccccceEEEEccCCCCCCCCC
Q 000517 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG-YVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNIT 950 (1449)
Q Consensus 872 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lT 950 (1449)
+++.+|+|+|++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999987653 358999999998765567788999999999999999
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000517 951 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 1029 (1449)
Q Consensus 951 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~-~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTs 1029 (1449)
|+|||.|++.++.+.+...++++++++++++.+||.+++|+.+|.++ .++||||||||++||+||+.+|+++||||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999999887666677778889999999999999999999764 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCCChhHHHHHHhcCCCCCCCCCC
Q 000517 1030 GLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNN 1109 (1449)
Q Consensus 1030 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~ 1109 (1449)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|.|+. +++.+||+++ |. +||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~-g~-~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDL-GH-PCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHc-CC-CCCCC
Confidence 9999999999999999998899999999999888999999999998 6899999997 6789999998 44 69999
Q ss_pred CCCCcceeeccCchhhh-----hhhhHHHHHHHhcHHHHHHHHHHHhhCCCCC---CCCCCCCCCccCcchHHHHHHHHH
Q 000517 1110 YNPATWVIEVTSTSAEA-----ELCVDFAQIFRESVLYENNRELVKQLNTPPP---GSKDLHFPTRFSRNFWGQFKSCLW 1181 (1449)
Q Consensus 1110 ~npa~~~l~v~~~~~~~-----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Q~~~l~~ 1181 (1449)
.|||||++|+++...+. ....++.+.|++|+.+++..+..+....+.+ ........++|..+++.|++.|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 99999999998754321 1123566778887776655443332211111 111111234678999999999999
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHhhHHHHHH
Q 000517 1182 KLHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVARERTVMYRE 1261 (1449)
Q Consensus 1182 R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE 1261 (1449)
|+++++||||.++.+|+++++++|+++|++||+++. ++++++++.|++|++++++++.++..+.+.++.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999975 46789999999999999999988888899999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 000517 1262 GFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASI 1341 (1449)
Q Consensus 1262 ~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~ 1341 (1449)
+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|+++++++.++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCcchhhhhhhhhCHHHHHHHHHHHHHhCCCcc-ceeecCC---C-ccHHHHHHhhcCCcc
Q 000517 1342 LSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWALNAMVTSQYGDIDK-EMIVFGE---T-KKLSSFIQDYFGFHH 1416 (1449)
Q Consensus 1342 ~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~-~~~~~~~---~-~~~~~~~~~~~g~~~ 1416 (1449)
++++++.++++|+||+++.++||+||+|++|+||++|++++++.|||.+... +|...+. + .+ ++++.+.||++.
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~-g~~~l~~~g~~~ 584 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSS-GEVILETLSFRN 584 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcC-hHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999998764 3421111 1 23 466778899999
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHhccccCC
Q 000517 1417 DRLPITAAVLIIYPLVLAFLFAFCIERLNFLRR 1449 (1449)
Q Consensus 1417 ~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1449 (1449)
++.|.++++|++++++|+++++++|++-...+|
T Consensus 585 ~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 585 ADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999998766665
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-91 Score=942.74 Aligned_cols=564 Identities=24% Similarity=0.396 Sum_probs=494.8
Q ss_pred ccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCC--CeeEEEEEEcCccCcc--ccccceEEEEccCCCCCC
Q 000517 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTS--GYVEGEIKISGYPKVQ--ETFARVSGYCEQTDIHSP 947 (1449)
Q Consensus 872 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~--~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~ 947 (1449)
.++.+|+|||+.++|||+++|+||||||||||||+|+|+..+ .+.+|+|.+||.+... ..+++.++||+|+|.|++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 456799999999999999999999999999999999998532 2368999999987532 235567999999999999
Q ss_pred CCCHHHHHHHHHHhccCC----CCChHHHHH-HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000517 948 NITVEESVIFSAWLRLAP----EINSKTKAE-FVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 1022 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr~~~----~~~~~~~~~-~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~il 1022 (1449)
.+||+|+|.|++.++.+. ....++..+ .++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+|+
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999998887643 123333333 357789999999999999998888999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCCChhHHHHHHhcCC
Q 000517 1023 FMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGIS 1101 (1449)
Q Consensus 1023 lLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~~~~~~~~~f~~~~ 1101 (1449)
||||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||++++|. +|+++|+|+. +++.+||+++
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~-~G~iv~~G~~----~~~~~yF~~l- 305 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLY-EGYQIYFGPA----DKAKQYFEKM- 305 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe-CCeEEEECCH----HHHHHHHHHc-
Confidence 999999999999999999999999874 99999999999888999999999998 5899999996 6899999998
Q ss_pred CCCCCCCCCCCCcceeeccCchhhh----------hhhhHHHHHHHhcHHHHHHHHHHHhhCCCC---------------
Q 000517 1102 GVPKIRNNYNPATWVIEVTSTSAEA----------ELCVDFAQIFRESVLYENNRELVKQLNTPP--------------- 1156 (1449)
Q Consensus 1102 ~~~~~~~~~npa~~~l~v~~~~~~~----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--------------- 1156 (1449)
|. +||+++|||||++|+++++.+. ....+|++.|++|+.+++..+.+++.....
T Consensus 306 G~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1394)
T TIGR00956 306 GF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVA 384 (1394)
T ss_pred CC-CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHh
Confidence 54 6999999999999998764311 123589999999998887766554321110
Q ss_pred CCCCCCCCCCccCcchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHH
Q 000517 1157 PGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAV 1236 (1449)
Q Consensus 1157 ~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~ 1236 (1449)
..++.....+.|..|+|+|+++|++|+++++||||.++++|+++++++|+++|++||+++. ++++++++.|++|+++
T Consensus 385 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~ 461 (1394)
T TIGR00956 385 KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAI 461 (1394)
T ss_pred hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHH
Confidence 0011122334688999999999999999999999999999999999999999999999986 4578999999999999
Q ss_pred HHHHHHHHHhHHhhHHHhhHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHH
Q 000517 1237 VFLGINNCSSVIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMF 1316 (1449)
Q Consensus 1237 ~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~ 1316 (1449)
++.++.++..+ +.+..||+||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++
T Consensus 462 ~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~ 540 (1394)
T TIGR00956 462 LFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540 (1394)
T ss_pred HHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHH
Confidence 99999887665 45567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhCHHHHHHHHHHHHHhCCCcccee
Q 000517 1317 CTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWALNAMVTSQYGDIDKEMI 1396 (1449)
Q Consensus 1317 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~ 1396 (1449)
++.++++++|+++++++||..+|+.++++++.++++|+||++|+++||+||+|++|+||++|+++|+++|||++...+|.
T Consensus 541 l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~ 620 (1394)
T TIGR00956 541 ICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECS 620 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998776553
Q ss_pred e--c----------------------CCC-ccHHHHHHhhcCCccCChhhhHHHHHHHHHHHHHHHHHHHHhccc
Q 000517 1397 V--F----------------------GET-KKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAFLFAFCIERLNF 1446 (1449)
Q Consensus 1397 ~--~----------------------~~~-~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1446 (1449)
. | |.+ +++.+|+...||++++++|+|++++++|+++|++++++++++++.
T Consensus 621 ~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 621 QYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 1 111 356789988899999999999999999999999999999999873
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-90 Score=928.21 Aligned_cols=566 Identities=25% Similarity=0.420 Sum_probs=486.3
Q ss_pred ccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC-eeEEEEEEcCccCccccccceEEEEccCCCCCCCCC
Q 000517 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG-YVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNIT 950 (1449)
Q Consensus 872 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lT 950 (1449)
.++.+|+|||+.++|||+++|+|||||||||||++|+|+..+. ..+|+|.+||.+......++.++||+|+|.|++.+|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 3567999999999999999999999999999999999986542 358999999988654344678999999999999999
Q ss_pred HHHHHHHHHHhccCCC-------CChHHH------------------------HHHHHHHHHHcCCcccccccccCCCCC
Q 000517 951 VEESVIFSAWLRLAPE-------INSKTK------------------------AEFVNEVLETIELDAIKDSLVGIPGVN 999 (1449)
Q Consensus 951 v~e~l~f~~~lr~~~~-------~~~~~~------------------------~~~v~~~l~~l~L~~~~~~~vg~~~~~ 999 (1449)
|+|+|.|++.++.+.. ...+++ +..++++++.+||++++|+.+|+..++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 9999999988764211 111111 123678999999999999999998889
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCc
Q 000517 1000 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGG 1078 (1449)
Q Consensus 1000 ~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG 1078 (1449)
+|||||||||+||++|+.+|+++||||||+|||+.++..+++.|+++++ .|+|||+++|||+.++++.||++++|. +|
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~-~G 414 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS-EG 414 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee-Cc
Confidence 9999999999999999999999999999999999999999999999986 589999999999889999999999998 58
Q ss_pred EEEEecCCCCChhHHHHHHhcCCCCCCCCCCCCCCcceeeccCchhh-h-----------hhhhHHHHHHHhcHHHHHHH
Q 000517 1079 RIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTSTSAE-A-----------ELCVDFAQIFRESVLYENNR 1146 (1449)
Q Consensus 1079 ~~v~~G~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~v~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~ 1146 (1449)
+++|+||. +++.+||+++ |. +||+++|||||++|+++.... . ....+|++.|++|+.+++..
T Consensus 415 ~ivy~G~~----~~~~~yF~~l-Gf-~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~ 488 (1470)
T PLN03140 415 QIVYQGPR----DHILEFFESC-GF-KCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLE 488 (1470)
T ss_pred eEEEeCCH----HHHHHHHHHc-CC-CCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHH
Confidence 99999996 6899999999 54 699999999999999986432 1 12357899999998887665
Q ss_pred HHHHhhCCCCCCCCCCCCCCccCcchHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHH
Q 000517 1147 ELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLF 1226 (1449)
Q Consensus 1147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~ 1226 (1449)
+.++.........+.....++|..++|.|++.|++|+++..||||.++..|+++.+++|+++|++||+++.+..+..+.+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~ 568 (1470)
T PLN03140 489 NELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGA 568 (1470)
T ss_pred HHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHH
Confidence 44332110000111111234689999999999999999999999999999999999999999999999986544455667
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHhhHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchh
Q 000517 1227 NIVGSSYLAVVFLGINNCSSVIPNVARERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAY 1306 (1449)
Q Consensus 1227 ~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~m~g~~~~~~ 1306 (1449)
.+.|++|+++++..++++ ..++.+..||+||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||+++++
T Consensus 569 ~~~g~lff~~l~~~~~~~-~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~ 647 (1470)
T PLN03140 569 LYIGALLFSMIINMFNGF-AELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEAS 647 (1470)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchh
Confidence 788999999998887765 4467788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhCHHHHHHHHHHHH
Q 000517 1307 KLFWNFYGMFCTMMFYNYLGMLLVSLTPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWALNAMVTS 1386 (1449)
Q Consensus 1307 ~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~ 1386 (1449)
+||.|+++++++.++++++++++++++|+..+|+.++++++.++++|+||+||+++||+||+|++|+||++|+++|+++|
T Consensus 648 ~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~N 727 (1470)
T PLN03140 648 RFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVN 727 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCccc-eeecCCCccHHHHHHhhcCCccC--ChhhhHHHHHHHHHHHHHHHHHHHHhcc
Q 000517 1387 QYGDIDKE-MIVFGETKKLSSFIQDYFGFHHD--RLPITAAVLIIYPLVLAFLFAFCIERLN 1445 (1449)
Q Consensus 1387 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~il~~~~~~f~~~~~~~l~~~~ 1445 (1449)
||.+.... +.+.+...+.++.+++.+|+..+ +.|+++++|+||+++|+++++++|++++
T Consensus 728 Ef~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 728 EMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred hccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99775432 21222223334444478899765 5699999999999999999999999987
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-81 Score=787.74 Aligned_cols=583 Identities=30% Similarity=0.517 Sum_probs=491.7
Q ss_pred CCCceEEEeeeEEEEEeeecCCCCCCCchhhhhhhhhccccccCccccccccccccceeeEEeCCeEEEEEcCCCCcHHH
Q 000517 133 LPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKST 212 (1449)
Q Consensus 133 ~p~v~v~~~~L~v~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 212 (1449)
...++++|+|+++++.. . .+ ..+++|+||||+++|||++|||||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~-~---------------------------~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKE-K---------------------------SK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecC-C---------------------------CC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 45788999999998876 1 01 2357999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhc
Q 000517 213 FLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEA 292 (1449)
Q Consensus 213 LL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~ 292 (1449)
||++|+|+..+...++|+|++||++.+....++.+|||.|+|.++|++||+|||.|+|.++.+.. +++.++
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~~~~k-- 142 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LSKEEK-- 142 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CCHHHH--
Confidence 99999999987667899999999887766678899999999999999999999999999986542 122222
Q ss_pred CCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCC
Q 000517 293 GIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNG 372 (1449)
Q Consensus 293 ~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsg 372 (1449)
+.++|.+++.|||.+|+||++|+...|||||||||||+||..|+.+|.||||||||||
T Consensus 143 ----------------------~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 143 ----------------------RERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred ----------------------HHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 3468999999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhhHH
Q 000517 373 LDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFL 452 (1449)
Q Consensus 373 LDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl 452 (1449)
|||.++.++++.|+++|+. |+|||+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcChhhhhhhhcccCCCCccCCHHHHHHHHh-cChhhHhHHHHhcCcccCCCCCCCccccCcc-cccHHHHHHHHHHH
Q 000517 453 QEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFK-ESPLVKKLDEELLVPYDKSKSPKNAISFSVY-SLSRWELFKACMSR 530 (1449)
Q Consensus 453 ~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~l~~R 530 (1449)
.++.+..++.+.... ........+.++ .....+... ......... . ..+.+ ..++|.|+..+.+|
T Consensus 280 l~l~s~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~----~~~~~~~~s~~~q~~~L~~R 346 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEE------AVRIAKLINKFSQTDNLKKTLE-ALEKSLSTS--K----KVEIGTSPSWWTQFKILLKR 346 (613)
T ss_pred HHHHccCCCchhHHh------HHHHHHHhhhccccchhhhhHH-HHhhhcccc--c----ccccccCCcHHHHHHHHHHH
Confidence 998874311000000 000001111111 000000000 000000000 0 00111 67899999999999
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhhhHHHHHHHHHHHHhhHH-HHHHHHhhhhhHHHhhc
Q 000517 531 ELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMP-ELSMTIQRLEVFYKQQE 609 (1449)
Q Consensus 531 ~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~-~~~~~~~~~~vf~k~r~ 609 (1449)
.++..+|++..+..|..|.+++++++|++|++.+ .+........|.+||.+.+..+..+. .++.+.+++++|.||+.
T Consensus 347 ~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~--~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~ 424 (613)
T KOG0061|consen 347 SLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLG--NDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETS 424 (613)
T ss_pred HhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCC--CchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999763 33334447788888888887666554 68899999999999999
Q ss_pred ccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 000517 610 LCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAG 689 (1449)
Q Consensus 610 ~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l~l~l~~~~~~sl~~~i~a~~~~~~~a~~~~ 689 (1449)
.+.|+.++|++++.+.++|+.++.+++|.+++|||+|+.++..+|+.+.++.++..+++.+++.+++++.++...|.+++
T Consensus 425 ~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~ 504 (613)
T KOG0061|consen 425 SGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLG 504 (613)
T ss_pred cCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHHHHHHhhcCCcccccCC---CCccchhhhhccCCcccccchh
Q 000517 690 SVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRWQKMLP---TNTTIGQEILESRGLNFDGFIF 766 (1449)
Q Consensus 690 ~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~---~~~~~G~~~L~~~g~~~~~~~~ 766 (1449)
+++++.+++++||+++.+++|.||+|+.|+|+++|++++++.|||.+....|... .+...|.++++..++...+ .
T Consensus 505 ~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 582 (613)
T KOG0061|consen 505 PVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSS--F 582 (613)
T ss_pred HHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccc--c
Confidence 9999999999999999999999999999999999999999999998733333221 2456788899888876544 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000517 767 WISLGALFGIALLLNIGFTLALTFLKS 793 (1449)
Q Consensus 767 w~~~~~l~g~~~~f~i~~~laL~~~~~ 793 (1449)
|.++.+++++.++|.++++++|++...
T Consensus 583 ~~~l~~l~~~~~~~~il~y~~L~~~~~ 609 (613)
T KOG0061|consen 583 WLDLLVLLAFIVFFRVLGYLALRFRVK 609 (613)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 889999999999999999999988653
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-83 Score=800.84 Aligned_cols=566 Identities=27% Similarity=0.478 Sum_probs=499.3
Q ss_pred ccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC-eeEEEEEEcCccCccccccceEEEEccCCCCCCCCC
Q 000517 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG-YVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNIT 950 (1449)
Q Consensus 872 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lT 950 (1449)
.+..+|+|+|+.++||+++.++||+||||||||++|+|..+.. ...|+|.+||++.+...-++.++|+.|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3457999999999999999999999999999999999965432 235799999998765444788999999999999999
Q ss_pred HHHHHHHHHHhccCCCC----ChHHHH-HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000517 951 VEESVIFSAWLRLAPEI----NSKTKA-EFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1025 (1449)
Q Consensus 951 v~e~l~f~~~lr~~~~~----~~~~~~-~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLD 1025 (1449)
|+|+|.|+++++.+... .+.++. +..+.+++.+||++++|++||+...+|+||||||||+||.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 99999999999987322 222222 2678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCCChhHHHHHHhcCCCCC
Q 000517 1026 EPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFEGISGVP 1104 (1449)
Q Consensus 1026 EPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~~~~~~~~~f~~~~~~~ 1104 (1449)
|+|+|||+.++.++.+.||++++. +.|+++++|||+.+++++||++++|.+ |+++|+||. +++++||+++ |.
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~-Gf- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDM-GF- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhc-Cc-
Confidence 999999999999999999999864 899999999999999999999999985 899999997 6899999998 44
Q ss_pred CCCCCCCCCcceeeccCchhhh-----------h-hhhHHHHHHHhcHHHHHHHHHHHhhCCCCCCCCCCCCCCccCcch
Q 000517 1105 KIRNNYNPATWVIEVTSTSAEA-----------E-LCVDFAQIFRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNF 1172 (1449)
Q Consensus 1105 ~~~~~~npa~~~l~v~~~~~~~-----------~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (1449)
.||+..++|||+.++++...+. . ...+|.+.|.+|+.+++....++........++.....++|..|+
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 6999999999999999832211 1 125899999999998877654432211112223333456899999
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhHHhhHH
Q 000517 1173 WGQFKSCLWKLHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGINNCSSVIPNVA 1252 (1449)
Q Consensus 1173 ~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~ 1252 (1449)
|.|++.|+.|.++.+.||..|...++++.+++|+++|++|++.+. .+..+.+.+.|++||++++..++++..+ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999982 5667889999999999999988877665 4455
Q ss_pred HhhHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000517 1253 RERTVMYREGFAGMYSPWAYALAQVTVEIPYLLIQALSYVIIGYPMIGYYWSAYKLFWNFYGMFCTMMFYNYLGMLLVSL 1332 (1449)
Q Consensus 1253 ~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~m~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~ 1332 (1449)
+.|+||+|||...+|++++|.++..+.++|..++.+++|.+|+||++||.+++++||.|+++++++..++.++.++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHhcccccCCCCcchhhhhhhhhCHHHHHHHHHHHHHhCCCccceee---------------
Q 000517 1333 TPNSMIASILSSVCYTLFNLFAGFLIPGPKIPKWWIWMYYMMPTSWALNAMVTSQYGDIDKEMIV--------------- 1397 (1449)
Q Consensus 1333 ~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~~--------------- 1397 (1449)
+++..+|+.++++.+.+..+++||+||.++||+||+|++|+||+.|+++++++|||++.+.+|..
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998766641
Q ss_pred ------cCCC-ccHHHHHHhhcCCccCChhhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 000517 1398 ------FGET-KKLSSFIQDYFGFHHDRLPITAAVLIIYPLVLAFLFAFCIERLNFL 1447 (1449)
Q Consensus 1398 ------~~~~-~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~ 1447 (1449)
+|.. +.+.+|++..|++++.+.|++++|++||.++|.++..+++.|+|.-
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1111 3457788888899999999999999999999999999999999853
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-79 Score=773.65 Aligned_cols=609 Identities=23% Similarity=0.372 Sum_probs=473.3
Q ss_pred CCCCceEEEeeeEEEEEeeecCCCCCCCchhhhhhhhhccccccCccccccccccccceeeEEeCCeEEEEEcCCCCcHH
Q 000517 132 KLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKS 211 (1449)
Q Consensus 132 ~~p~v~v~~~~L~v~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKS 211 (1449)
..++++++|.|++|.+.. .....+. ..+...+...........+..++++|+|+|++++|||+++|+||||||||
T Consensus 34 ~~~~~~~~~~~~~y~~~~-~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKS 108 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKF-ENMKNKG----SNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKS 108 (659)
T ss_pred CCCceEEEEEeEEEEEcc-CCCcccc----cccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHH
Confidence 346899999999999875 1101000 01111111110000000111235799999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCCccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHh
Q 000517 212 TFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKE 291 (1449)
Q Consensus 212 TLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~ 291 (1449)
|||++|+|+++|+ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.... .++.++
T Consensus 109 TLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~~~~- 178 (659)
T PLN03211 109 TLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTKQEK- 178 (659)
T ss_pred HHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCHHHH-
Confidence 9999999999874 3589999999987542 23568999999999999999999999876542211 011110
Q ss_pred cCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCC
Q 000517 292 AGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITN 371 (1449)
Q Consensus 292 ~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPts 371 (1449)
...++++++.+||++++||.+|+...++|||||||||+||++|+.+|++|+|||||+
T Consensus 179 -----------------------~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPts 235 (659)
T PLN03211 179 -----------------------ILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 235 (659)
T ss_pred -----------------------HHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCC
Confidence 123577899999999999999998899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhhH
Q 000517 372 GLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDF 451 (1449)
Q Consensus 372 gLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adf 451 (1449)
|||+.++.++++.|+++++ .++|+|+++|||..+++++||+|++|++|+++|+|+.+++.+||+++||+||++.|||||
T Consensus 236 gLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf 314 (659)
T PLN03211 236 GLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADF 314 (659)
T ss_pred CcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHH
Confidence 9999999999999999986 589999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcChhhHhHHHHhcC---cccCCC-----CCCC-ccccCcccccHHH
Q 000517 452 LQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLV---PYDKSK-----SPKN-AISFSVYSLSRWE 522 (1449)
Q Consensus 452 l~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---~~~~~~-----~~~~-~~~~~~~~~s~~~ 522 (1449)
++++++...+.+.....+.+ ...+.+.+.|++.. .+...+.... ...... ..+. ......+..++|.
T Consensus 315 ~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 390 (659)
T PLN03211 315 LLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFN 390 (659)
T ss_pred HHHHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHH
Confidence 99998764321100000111 11122333443211 1111111000 000000 0000 0011224567999
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhhhHHHHHHHHHHHH-hhHHHHHHHHhhh
Q 000517 523 LFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLV-DGMPELSMTIQRL 601 (1449)
Q Consensus 523 ~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~g~lff~~~~~~~-~~~~~~~~~~~~~ 601 (1449)
|+..+++|.++. +|+......|+++.+++|+++|++|++.+ ..+.+.+.|++||++++..+ ..++.++.+..++
T Consensus 391 Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 391 QFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999888 67777778999999999999999999753 23567788999999877554 5567888999999
Q ss_pred hhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000517 602 EVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQT 681 (1449)
Q Consensus 602 ~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l~l~l~~~~~~sl~~~i~a~~~~ 681 (1449)
++|+|||..++|++++|++++++.++|+.++.+++|.+++|||+|+.+++.+|+.+++++++..+++.+++.++++++++
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHHHHHHhhcCCc-----ccccCCC-Cccchhhhhc
Q 000517 682 EFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPR-----WQKMLPT-NTTIGQEILE 755 (1449)
Q Consensus 682 ~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~-----~~~~~~~-~~~~G~~~L~ 755 (1449)
...|+.+++++++++++|+||+++ +||+||+|++|+||++|++++++.|||.+.+ ..|..+. ....+..++.
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~ 623 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE 623 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch
Confidence 999999999999999999999997 7999999999999999999999999997653 2343221 1111122333
Q ss_pred cCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000517 756 SRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLK 792 (1449)
Q Consensus 756 ~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~ 792 (1449)
...+. ....|.++++++++.++|.++.+++|++.+
T Consensus 624 ~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 624 EDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33332 234788999999999999999999998653
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-79 Score=779.76 Aligned_cols=569 Identities=27% Similarity=0.452 Sum_probs=483.2
Q ss_pred ccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCCccCCCC
Q 000517 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 181 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 260 (1449)
+.++++|+|+|+.++|||+++|+|||||||||||++|+|+.+++...+|+|.+||.+++....++.++||+|+|.+++++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34567999999999999999999999999999999999999876556899999999876444467899999999999999
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccc-
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAM- 339 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~- 339 (1449)
||+|||.|+++++.+... .+.+ .+..++.+++.|||++++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~~-------~~~~------------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRV-------TKKE------------------------KRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCC-------CHHH------------------------HHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 999999999887643211 1111 11246789999999999999999863
Q ss_pred cccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeC
Q 000517 340 RRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419 (1449)
Q Consensus 340 ~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~ 419 (1449)
.|||||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .++|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 689999999999999999999999999999999999999999999999986 4899999999999999999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcChhhHhHHHHhcC
Q 000517 420 GKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLV 499 (1449)
Q Consensus 420 G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 499 (1449)
|+++|+|+++++.+||+++||+||++.||+||+.++++....... ......+++.+.|+.++..++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-------ESRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-------chHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 999999999999999999999999999999999998865322110 0112234556666666555544433321
Q ss_pred cccCCC---CCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhhh
Q 000517 500 PYDKSK---SPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYM 576 (1449)
Q Consensus 500 ~~~~~~---~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~ 576 (1449)
....+. ..........+..+++.|+..+++|.++..+||+..+..++++.+++++++|++|++.+ .+....+.+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~--~~~~~~~~~~ 393 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQG--LTQKGVQNIN 393 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCC--CCHHHHHHHH
Confidence 111100 00011122456788999999999999999999999999999999999999999999754 3334566678
Q ss_pred HHHHHHHHHHHHhhH-HHHHHHHhhhhhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccHHHHH
Q 000517 577 GSLYFSLVVLLVDGM-PELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFF 655 (1449)
Q Consensus 577 g~lff~~~~~~~~~~-~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~~~f~ 655 (1449)
|++|+.++...+.++ ..++.+..++++|+||+..++|++++|++++.+.++|+.++.+++|.+++|||+|+.+++.+|+
T Consensus 394 g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~ 473 (617)
T TIGR00955 394 GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFL 473 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHH
Confidence 899999887777654 5567788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHHHHHHhhc
Q 000517 656 RQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFL 735 (1449)
Q Consensus 656 ~~~l~l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~ 735 (1449)
.+++++++..+++.++++++++++++...|..+++++++++++|+||+++.++||+||+|++|+||++|++++++.|||.
T Consensus 474 ~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~ 553 (617)
T TIGR00955 474 TFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWS 553 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcc-cccCCC----CccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000517 736 APRW-QKMLPT----NTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLK 792 (1449)
Q Consensus 736 ~~~~-~~~~~~----~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~ 792 (1449)
+..+ .|...+ +...|..+|+.+|+..+ ++|.++++++++.++|.++++++|++..
T Consensus 554 ~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~~ 613 (617)
T TIGR00955 554 DVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIRI 613 (617)
T ss_pred CCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8776 343211 23458999999998764 4588999999999999999999998753
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-72 Score=709.23 Aligned_cols=213 Identities=27% Similarity=0.407 Sum_probs=182.0
Q ss_pred cEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000517 847 LTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP 926 (1449)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 926 (1449)
-.++|+||++.++..+ ...+|+|+|++|++|+.+||+|||||||||.+.+|-+..+ +.+|.|.|||++
T Consensus 986 G~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~IDg~d 1053 (1228)
T KOG0055|consen 986 GDIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVKIDGVD 1053 (1228)
T ss_pred eEEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCcc
Confidence 4689999999998654 4679999999999999999999999999999999987544 468999999998
Q ss_pred Ccc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHH-------cCCcccccccccCC
Q 000517 927 KVQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET-------IELDAIKDSLVGIP 996 (1449)
Q Consensus 927 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~-------l~L~~~~~~~vg~~ 996 (1449)
+++ +.+|+++|.|.|+|.+|. -|++||+.|+ .. +.+.++ +.+.++. .+|.+-.||.||..
T Consensus 1054 ik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG-~~----~vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT~vGer 1123 (1228)
T KOG0055|consen 1054 IKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYG-SE----EVSEEE----IIEAAKLANAHNFISSLPQGYDTRVGER 1123 (1228)
T ss_pred cccCCHHHHHHhcceeccCchhhc-ccHHHHHhcc-CC----CCCHHH----HHHHHHHhhhHHHHhcCcCcccCccCcc
Confidence 654 567899999999999974 7999999997 11 123322 2223322 36777899999988
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEec
Q 000517 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 997 ~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~ 1076 (1449)
|. +||||||||++||||+++||+||+|||.||.||+++.+.|+++|.+. ..|+|.|+++|++| ..+.+|.+.+++
T Consensus 1124 G~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a-~~gRT~IvIAHRLS--TIqnaD~I~Vi~- 1198 (1228)
T KOG0055|consen 1124 GV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA-MEGRTTIVIAHRLS--TIQNADVIAVLK- 1198 (1228)
T ss_pred cC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-hcCCcEEEEecchh--hhhcCCEEEEEE-
Confidence 76 69999999999999999999999999999999999999999999996 46999999999986 468899999998
Q ss_pred CcEEEEecCC
Q 000517 1077 GGRIIYCGPL 1086 (1449)
Q Consensus 1077 gG~~v~~G~~ 1086 (1449)
+|++++.|+-
T Consensus 1199 ~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1199 NGKVVEQGTH 1208 (1228)
T ss_pred CCEEEecccH
Confidence 6999999984
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-69 Score=724.38 Aligned_cols=802 Identities=19% Similarity=0.254 Sum_probs=483.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC--CCceEEEEcCCCccCCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV--PPKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1449)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+|
T Consensus 943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LT 1019 (2272)
T TIGR01257 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLT 1019 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCC
Confidence 46999999999999999999999999999999999999998 999999999875321 2467999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|+||+.|.++.++.... + .+..++++++.+||++..|+.+++
T Consensus 1020 V~E~L~f~~~lkg~~~~----------~------------------------~~~~v~~lL~~vgL~~~~~~~~~~---- 1061 (2272)
T TIGR01257 1020 VAEHILFYAQLKGRSWE----------E------------------------AQLEMEAMLEDTGLHHKRNEEAQD---- 1061 (2272)
T ss_pred HHHHHHHHHHhcCCCHH----------H------------------------HHHHHHHHHHHcCCchhhcCChhh----
Confidence 99999998776542110 0 011356789999999988888876
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
|||||||||+||+||+++|++++|||||+|||+.++..+++.|+++. .++|+|++. |..+++..++|+|++|++|+
T Consensus 1062 -LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~--~g~TIIltT-Hdmdea~~laDrI~iL~~Gk 1137 (2272)
T TIGR01257 1062 -LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIMST-HHMDEADLLGDRIAIISQGR 1137 (2272)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEE-CCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999984 367777665 56788999999999999999
Q ss_pred EEEecChhhHHHHHHhcCCCC-------------------------------CCCC-----------C---hhhHHHHhc
Q 000517 422 IVYHGPQDHVLAFFEDCGFRC-------------------------------PERK-----------G---VSDFLQEVL 456 (1449)
Q Consensus 422 iv~~G~~~~~~~~F~~~Gf~~-------------------------------p~~~-----------~---~adfl~ev~ 456 (1449)
+++.|+.+++.+.|. .||.. |.+. + ..++++...
T Consensus 1138 L~~~Gs~~~Lk~~~g-~gy~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~i 1216 (2272)
T TIGR01257 1138 LYCSGTPLFLKNCFG-TGFYLTLVRKMKNIQSQRGGCEGTCSCTSKGFSTRCPARVDEITPEQVLDGDVNELMDLVYHHV 1216 (2272)
T ss_pred EEEecCHHHHHHhcC-CcEEEEEEecccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHhC
Confidence 999999999987663 34421 1000 0 111222111
Q ss_pred Chhhhh---hhhcccCCCCccCCHHHHHHHHhcChhhH--------------------hHHHHhcC--------------
Q 000517 457 SRKDQA---QFWLHTELPYSYFSVDMFSKKFKESPLVK--------------------KLDEELLV-------------- 499 (1449)
Q Consensus 457 s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--------------------~~~~~~~~-------------- 499 (1449)
...... ........|..+.....|...|++-+... ++.++...
T Consensus 1217 P~a~l~~~~g~el~y~LP~~~~~~~~f~~lf~~Le~~~~~lgi~sygis~tTLEeVFlkv~~~~~~~~~~~~~~~~~~~~ 1296 (2272)
T TIGR01257 1217 PEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDADSGSLFAGGAQQKREN 1296 (2272)
T ss_pred CCcEEEeccCCEEEEEecccccccchHHHHHHHHHhhHhhCCCceEEeecCCHHHHHHHhhhhccccccccccccccccc
Confidence 100000 00000011221111112333322111000 00000000
Q ss_pred ---------cccCCCCCC--------C--------------c---cccCcccccHHHHHHHHHHHHHHHHhhchHHHHHH
Q 000517 500 ---------PYDKSKSPK--------N--------------A---ISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFK 545 (1449)
Q Consensus 500 ---------~~~~~~~~~--------~--------------~---~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~ 545 (1449)
+.+...... . . .....-..-+++|+++++.+.+...+||+..+++.
T Consensus 1297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~L~~qQf~All~KR~~~~~Rd~k~~~~q 1376 (2272)
T TIGR01257 1297 ANLRHPCSGPTEKAGQTPQASHTCSPGQPAAHPEGQPPPEPEDPGVPLNTGARLILQHVQALLVKRFQHTIRSHKDFLAQ 1376 (2272)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 000000000 0 0 00000011357899999999999999999887766
Q ss_pred HHHHHHHHH---HHHHH----------------H------hccc------------------------------------
Q 000517 546 TTQLIMLAT---MAMTV----------------F------LRTR------------------------------------ 564 (1449)
Q Consensus 546 ~~~~~i~al---i~g~v----------------f------~~~~------------------------------------ 564 (1449)
++..+++.+ ++..+ | +...
T Consensus 1377 illPi~fv~lal~~~~~~~~~~~~p~l~Ls~~~Y~~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 1456 (2272)
T TIGR01257 1377 IVLPATFVFLALMLSIIIPPFGEYPALTLHPWMYGQQYTFFSMDEPNSEHLEVLADVLLNKPGFGNRCLKEEWLPEYPCG 1456 (2272)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCCeecchhhccCcceeccccccccccccchhhhhhccccccccccccccccccccc
Confidence 654433222 21110 0 0000
Q ss_pred C------C----------------------------------------------------c------cc----cch----
Q 000517 565 M------E----------------------------------------------------I------DV----FHG---- 572 (1449)
Q Consensus 565 ~------~----------------------------------------------------~------~~----~~~---- 572 (1449)
. . . +. ...
T Consensus 1457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~n~sdyll~ 1536 (2272)
T TIGR01257 1457 NSTPWKTPSVSPNITHLFQKQKWTAAHPSPSCRCSTREKLTMLPECPEGAGGLPPPQRTQRSTEILQDLTDRNISDFLVK 1536 (2272)
T ss_pred ccccccccchhHHHHHHHhhccccccccccccccccccccccccccccccccCCCcccccccchhhhhhcccchHHHHhh
Confidence 0 0 0 00 000
Q ss_pred ------------------hhh-------------------hHH-------------------------------------
Q 000517 573 ------------------NYY-------------------MGS------------------------------------- 578 (1449)
Q Consensus 573 ------------------~~~-------------------~g~------------------------------------- 578 (1449)
..+ .++
T Consensus 1537 ~~~~~~~~~~~~~~~~~~~ry~~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1616 (2272)
T TIGR01257 1537 TYPALIRSSLKSKFWVNEQRYGGISIGGKLPAIPITGEALVGFLSDLGQMMNVSGGPVTREASKEMPDFLKHLETEDNIK 1616 (2272)
T ss_pred hhhhhhccccccccccccccccccccccccccccccchhhhhhhhhcccccccccccccccccchhhhhhhccccCcceE
Confidence 000 000
Q ss_pred ------------HHHHHHHHHHh-h------------------------------------------------HHHHHHH
Q 000517 579 ------------LYFSLVVLLVD-G------------------------------------------------MPELSMT 597 (1449)
Q Consensus 579 ------------lff~~~~~~~~-~------------------------------------------------~~~~~~~ 597 (1449)
++..++...+. . ++-++..
T Consensus 1617 vwfNn~~~Hs~p~~lN~l~NaiLr~~~~~~~~~~~~~I~v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~as 1696 (2272)
T TIGR01257 1617 VWFNNKGWHALVSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPAS 1696 (2272)
T ss_pred EEEcCCcccHHHHHHHHHHHHHHHHhcccccCCccceEEEEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHH
Confidence 00000000000 0 0000000
Q ss_pred HhhhhhHHHhhcccc--------cchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc--CCcccHHHHHHHHHHHHHHHHH
Q 000517 598 IQRLEVFYKQQELCF--------YPAWAYAIPATILKVPLSLVASLAWTCLTYYVI--GYSPEVWRFFRQFILLFASHFT 667 (1449)
Q Consensus 598 ~~~~~vf~k~r~~~~--------y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~--gl~~~~~~f~~~~l~l~l~~~~ 667 (1449)
+...+ .+||..+. -++.+|++++.+.++...++..++..++.+..- ++. +...+...++++++..++
T Consensus 1697 fv~~~--V~ER~skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~-~~~~l~~~~lll~lyG~a 1773 (2272)
T TIGR01257 1697 FVLYL--IQERVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYT-SPENLPALVALLMLYGWA 1773 (2272)
T ss_pred Hheee--ehHHhhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhc-CcchHHHHHHHHHHHHHH
Confidence 00000 12222221 256789999999998888777766665554321 222 223444445555666666
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---HHHHHhhhccc----c---CCChhHHHHHHHhHcHHHHHHHHH---HHHhh
Q 000517 668 SISMFRFMASVFQTEFAAMTAGSVVI---LFVFLFGGFVI----S---RPSMPAWLKWGFWISPVTYGEIGL---SVNEF 734 (1449)
Q Consensus 668 ~~sl~~~i~a~~~~~~~a~~~~~~~~---l~~~l~~Gf~i----~---~~~ip~~~~W~~~isp~~y~~~al---~~nef 734 (1449)
+..+..+++-++.+...|.....++. .+...+..+++ + ...+...+.|++.+.|..---.++ ..++.
T Consensus 1774 ~ip~tYl~SflF~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l~~~~~ 1853 (2272)
T TIGR01257 1774 VIPMMYPASFLFDVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQA 1853 (2272)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhhhHHHHHHHHHhHH
Confidence 66666667766666655543322111 11111111211 1 122346788888887754322222 22221
Q ss_pred cCCcccccCCCCccchhhhhccCCcccccchhHHHHH----HHHHHHHHHHHHHHHHHHhccccCCCccccchhhhhhhc
Q 000517 735 LAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLG----ALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQ 810 (1449)
Q Consensus 735 ~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~----~l~g~~~~f~i~~~laL~~~~~~~~~~~~~s~~~~~~~~ 810 (1449)
....+. ..|... ....|-|-..| .++...++|.++ .+.+.+...... .. ...
T Consensus 1854 ~~~~~~-------~~~~~~-------~~~~~~~~~~g~~ll~m~~~~iv~flL-l~~ie~~~~~~~--~~-------~~~ 1909 (2272)
T TIGR01257 1854 VTDVYA-------QFGEEH-------SANPFQWDLIGKNLVAMAVEGVVYFLL-TLLIQHHFFLSR--WI-------AEP 1909 (2272)
T ss_pred HHHHHH-------hhcccc-------cCCccchhhccHHHHHHHHHHHHHHHH-HHHHHhhhhhhh--hc-------ccc
Confidence 100000 000000 00112222111 111111111111 111111100000 00 000
Q ss_pred ccccCCCCCCcccCCCCCCCCCcccccCCccc--cCCCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCe
Q 000517 811 ESEDSSYGEPVKENSRSTPMTNKESYKGRMVL--PFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGV 888 (1449)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge 888 (1449)
.. .+...+. . ....++ ..+. ....-.+..+|++..++ .+++.+|+|||+.|++||
T Consensus 1910 ~~-----~~~~~eD--~----DV~~Er-~rV~~~~~~~~~L~v~nLsK~Y~-----------~~~~~aL~~ISf~I~~GE 1966 (2272)
T TIGR01257 1910 AK-----EPIFDED--D----DVAEER-QRIISGGNKTDILRLNELTKVYS-----------GTSSPAVDRLCVGVRPGE 1966 (2272)
T ss_pred Cc-----CcCCCch--h----HHHHHH-HHHhccCCCCceEEEEEEEEEEC-----------CCCceEEEeeEEEEcCCc
Confidence 00 0000000 0 000000 0000 00112367777775542 112569999999999999
Q ss_pred EEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCC
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ--ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPE 966 (1449)
Q Consensus 889 ~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~ 966 (1449)
++||+||||||||||+++|+|...+ .+|+|.++|++... ...++.+|||+|++.+++.+||+|++.+.+.++.
T Consensus 1967 i~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g--- 2041 (2272)
T TIGR01257 1967 CFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG--- 2041 (2272)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---
Confidence 9999999999999999999998765 58999999987632 2345679999999999999999999998777653
Q ss_pred CChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000517 967 INSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046 (1449)
Q Consensus 967 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l 1046 (1449)
.+.++.++.++++++.++|.+.+|+.++ .|||||||||+||+||+.+|+||||||||+|||+.+++.+++.|+++
T Consensus 2042 ~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l 2116 (2272)
T TIGR01257 2042 VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSI 2116 (2272)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 2334445678899999999998888865 79999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCCChhHHHHHH
Q 000517 1047 VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYF 1097 (1449)
Q Consensus 1047 ~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~~~~~~~~~f 1097 (1449)
+++|+|||+|||+++ ++...||++++|. +|+++..|++ +++.+.|
T Consensus 2117 ~~~g~TIILtTH~me-e~e~lcDrV~IL~-~G~i~~~Gs~----q~Lk~~~ 2161 (2272)
T TIGR01257 2117 IREGRAVVLTSHSME-ECEALCTRLAIMV-KGAFQCLGTI----QHLKSKF 2161 (2272)
T ss_pred HhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH----HHHHHHh
Confidence 878999999999986 6778899999998 5899999986 4454444
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-68 Score=689.30 Aligned_cols=735 Identities=22% Similarity=0.281 Sum_probs=424.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCCccCCCCCHH
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVR 263 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1449)
.+.|+|||++|++|+++||+||.|||||+||.+|.|+++.. +|+|.++| .++||||+++. .+.|||
T Consensus 534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pWI-~ngTvr 599 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPWI-QNGTVR 599 (1381)
T ss_pred cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccHh-hCCcHH
Confidence 34899999999999999999999999999999999999875 99999998 58999998875 557999
Q ss_pred HHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccC
Q 000517 264 ETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343 (1449)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGl 343 (1449)
|||.|+.. .|.++|.+++.+|++++|... |+.+..|.||+.. -.|
T Consensus 600 eNILFG~~--------------------------~d~~rY~~Vi~aC~L~~Dle~--------Lp~GD~TeIGErG-inL 644 (1381)
T KOG0054|consen 600 ENILFGSP--------------------------YDEERYDKVIKACALKKDLEI--------LPFGDLTEIGERG-INL 644 (1381)
T ss_pred HhhhcCcc--------------------------ccHHHHHHHHHHccCHhHHhh--------cCCCCcceecCCc-cCC
Confidence 99999742 356789999999999887665 8899999999732 239
Q ss_pred ChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeE
Q 000517 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIA-CIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422 (1449)
Q Consensus 344 SGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~-~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~i 422 (1449)
|||||||+++|||+++++||++||+|.|++|+++..+|++ |++.+. .++|+|+..|| -+....+|.|++|++|+|
T Consensus 645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILVTHq--l~~L~~ad~Iivl~~G~I 720 (1381)
T KOG0054|consen 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILVTHQ--LQFLPHADQIIVLKDGKI 720 (1381)
T ss_pred cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEEeCc--hhhhhhCCEEEEecCCeE
Confidence 9999999999999999999999999999999999999996 776654 46898888774 578899999999999999
Q ss_pred EEecChhhHHH---HHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHH-HHHHH----hcChhhHhHH
Q 000517 423 VYHGPQDHVLA---FFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDM-FSKKF----KESPLVKKLD 494 (1449)
Q Consensus 423 v~~G~~~~~~~---~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~s~~~~~~~ 494 (1449)
+..|+++|+.+ +|+++.-+ +......+ ...++ .+.+......+. ..+.- ++....+..+
T Consensus 721 ~~~Gty~el~~~~~~~~~l~~~-~~~~~~~~-----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1381)
T KOG0054|consen 721 VESGTYEELLKSGGDFAELAHE-EESEQEEE-----ASEKD-------LESGESSRESESRSLESLSSEEEKSKDEKEEE 787 (1381)
T ss_pred ecccCHHHHHhcchhHHHHhhc-cchhhccc-----ccccc-------ccccccccchhhhhhhhhcccccccccccchh
Confidence 99999999984 34333100 00000000 00000 000000000000 00000 0000000000
Q ss_pred HHhcCcccCCCCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHH-HHHHHHHH-HHHHHHHHHhcccCCcc---c
Q 000517 495 EELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYV-FKTTQLIM-LATMAMTVFLRTRMEID---V 569 (1449)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~-~~~~~~~i-~ali~g~vf~~~~~~~~---~ 569 (1449)
.++.. .+....+.+..+.| +.++++... ..... +-+.+... +..+.+..|+....+.. .
T Consensus 788 ~~~~~---~ee~~~G~v~~~vY----~~Y~~a~~g---------~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~ 851 (1381)
T KOG0054|consen 788 DKLVQ---EEERETGKVSWSVY----KKYIKAAGG---------FLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNG 851 (1381)
T ss_pred hHHHH---HHHHhcCEeeHHHH----HHHHHhccc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 00000 00001111222222 334433110 00000 01111111 11111222222111111 0
Q ss_pred ---cchhhhhH----HHHHHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHH------------------------
Q 000517 570 ---FHGNYYMG----SLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAY------------------------ 618 (1449)
Q Consensus 570 ---~~~~~~~g----~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay------------------------ 618 (1449)
.+...|.+ ..+...+..++.++......+.....++.+...+..++..+
T Consensus 852 ~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~ 931 (1381)
T KOG0054|consen 852 TTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVL 931 (1381)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHh
Confidence 11111221 11111111111221111111111111111111111111100
Q ss_pred -----------------HHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccHHHHHHHH----HHHHHHHHHHHH----HHH
Q 000517 619 -----------------AIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQF----ILLFASHFTSIS----MFR 673 (1449)
Q Consensus 619 -----------------~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~----l~l~l~~~~~~s----l~~ 673 (1449)
.+..+..-.|+.++..+...++.|++-.+.....|-++.+ ...+..|+...- ..|
T Consensus 932 Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIR 1011 (1381)
T KOG0054|consen 932 LPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIR 1011 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceee
Confidence 0111111234444444333444443332222222222211 111222221100 000
Q ss_pred -------HHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHH-HHHhHcHHHHHHHHHHHHhhcCCcccccCCC
Q 000517 674 -------FMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLK-WGFWISPVTYGEIGLSVNEFLAPRWQKMLPT 745 (1449)
Q Consensus 674 -------~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~-W~~~isp~~y~~~al~~nef~~~~~~~~~~~ 745 (1449)
|+...... .-.. .-..+.+. ....|+. |.-.++-+.-...++..--....
T Consensus 1012 Af~~~~rf~~~~~~~-----~D~~--~~~~f~~~-------~a~RWla~Rle~ig~~~v~~~al~~vl~~~~-------- 1069 (1381)
T KOG0054|consen 1012 AFGKEERFIQENDEL-----IDEN--SRAFFLSI-------SANRWLAVRLELLGNLVVLIAALFAVLLPSG-------- 1069 (1381)
T ss_pred eccccHHHHHHHHHH-----hhhh--HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--------
Confidence 00000000 0000 00000000 0011110 11112111111112111100000
Q ss_pred CccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhc--cccCCCccccchhhhhhhcccccCCCCCCccc
Q 000517 746 NTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFL--KSSGSSRVMISHEKLAKMQESEDSSYGEPVKE 823 (1449)
Q Consensus 746 ~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 823 (1449)
... ..++|+++.|.+..+-.+.+. .....++.++|+||+.++.....+.+....
T Consensus 1070 ------------~~~----------~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~-- 1125 (1381)
T KOG0054|consen 1070 ------------LIS----------PGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIE-- 1125 (1381)
T ss_pred ------------CCC----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCc--
Confidence 000 134555555555444444333 344557788999999987654322110000
Q ss_pred CCCCCCCCCcccccCCccccCCCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHH
Q 000517 824 NSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTL 903 (1449)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTL 903 (1449)
. . .+++.||.++ .++|+|++.++.. +-..+|||||++|+|||++||+|++|||||||
T Consensus 1126 ~--~---~pp~~WP~~G-------~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL 1182 (1381)
T KOG0054|consen 1126 E--S---RPPPSWPSKG-------EIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSL 1182 (1381)
T ss_pred C--C---CCCCCCCCCC-------eEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHH
Confidence 0 1 1345576655 4666665544321 22359999999999999999999999999999
Q ss_pred HhhhcCCCCCCeeEEEEEEcCccCcc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHH
Q 000517 904 MDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 980 (1449)
Q Consensus 904 l~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l 980 (1449)
+++|.+...+ .+|+|.|||.++.+ .++|++++.+||||.+|. -|+|.|| |+..+..++.++++|
T Consensus 1183 ~~aLFRl~e~--~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-GTvR~NL----------DPf~e~sD~~IW~AL 1249 (1381)
T KOG0054|consen 1183 ILALFRLVEP--AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-GTVRFNL----------DPFDEYSDDEIWEAL 1249 (1381)
T ss_pred HHHHHHhcCc--cCCeEEEcCeecccccHHHHHhcCeeeCCCCceec-Ccccccc----------CcccccCHHHHHHHH
Confidence 9999987654 58999999998754 468889999999999875 5888886 455666778899999
Q ss_pred HHcCCcccc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 000517 981 ETIELDAIK-------DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTI 1053 (1449)
Q Consensus 981 ~~l~L~~~~-------~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tv 1053 (1449)
|..+|.+.. |+.|...| .++|.||||.+|+||||+++++||+|||+|+++|++|...|+++||+-. +++||
T Consensus 1250 e~~~Lk~~v~~~p~~Ld~~v~egG-~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTV 1327 (1381)
T KOG0054|consen 1250 ERCQLKDVVSSLPGGLDSEVSEGG-ENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTV 1327 (1381)
T ss_pred HHhChHHHHhhCCcCCCceecCCC-ccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeE
Confidence 999886643 44454444 5699999999999999999999999999999999999999999999965 58999
Q ss_pred EEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1054 VCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1054 i~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
|++.|+.+ ....+|+|++|+ .|+++++|++.
T Consensus 1328 ltIAHRl~--TVmd~DrVlVld-~G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1328 LTIAHRLN--TVMDSDRVLVLD-AGRVVEFDSPA 1358 (1381)
T ss_pred EEEeeccc--hhhhcCeEEEee-CCeEeecCChH
Confidence 99999976 345689999998 58999999984
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-65 Score=701.22 Aligned_cols=211 Identities=22% Similarity=0.308 Sum_probs=178.3
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++|+|++++++. +...+|+|||++|+|||++||+|+||||||||+++|.|...+ .+|+|.|||.++
T Consensus 1237 ~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~dI 1303 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCDI 1303 (1622)
T ss_pred cEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEec
Confidence 5889999887632 123599999999999999999999999999999999997665 589999999986
Q ss_pred cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000517 928 VQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-------IKDSLVGIPG 997 (1449)
Q Consensus 928 ~~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 997 (1449)
.+ ..+|+.++||||++.+|.. |++|||.+.. . ..++.++++++..++.+ -.|+.+|..|
T Consensus 1304 ~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~----~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G 1372 (1622)
T PLN03130 1304 SKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------E----HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAG 1372 (1622)
T ss_pred ccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------C----CCHHHHHHHHHHcCcHHHHHhCccccCccccCCC
Confidence 43 5678899999999998864 9999996531 1 12355777888777643 4577787655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
. .||||||||++|||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....+|+|++|+ +
T Consensus 1373 ~-nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd-~ 1447 (1622)
T PLN03130 1373 E-NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLD-A 1447 (1622)
T ss_pred C-CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEE-C
Confidence 4 699999999999999999999999999999999999999999999975 5899999999975 456799999998 5
Q ss_pred cEEEEecCCC
Q 000517 1078 GRIIYCGPLG 1087 (1449)
Q Consensus 1078 G~~v~~G~~~ 1087 (1449)
|++++.|++.
T Consensus 1448 G~IvE~Gt~~ 1457 (1622)
T PLN03130 1448 GRVVEFDTPE 1457 (1622)
T ss_pred CEEEEeCCHH
Confidence 9999999874
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=695.32 Aligned_cols=210 Identities=20% Similarity=0.289 Sum_probs=177.6
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++|+|++++++. +...+|+|+|++|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.++
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEEh
Confidence 5889999887731 123599999999999999999999999999999999998765 589999999986
Q ss_pred cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000517 928 VQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-------IKDSLVGIPG 997 (1449)
Q Consensus 928 ~~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 997 (1449)
.+ ..+|+.++||||++.+++ -|++|||.+.. + ..++.++++++..++.+ -.|+.+|..|
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~------~----~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1369 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFS------E----HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGG 1369 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCC------C----CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCC
Confidence 43 567889999999999886 49999996421 1 12345777888877754 3467777655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
. +||||||||++|||||+++|+||+||||||+||+.+.+.|++.|++.. +++|+|+++|+++ ....+|++++|+ +
T Consensus 1370 ~-~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~-~ 1444 (1495)
T PLN03232 1370 E-NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLS-S 1444 (1495)
T ss_pred C-CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEE-C
Confidence 4 699999999999999999999999999999999999999999999874 5899999999975 456799999998 5
Q ss_pred cEEEEecCC
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~v~~G~~ 1086 (1449)
|++++.|++
T Consensus 1445 G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 GQVLEYDSP 1453 (1495)
T ss_pred CEEEEECCH
Confidence 899999986
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-64 Score=599.48 Aligned_cols=474 Identities=26% Similarity=0.341 Sum_probs=357.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-CCeeeEEEECCccCCCCCC-------CceEEEEcCCC-
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS-LKVTGEVSYNGYKLEEFVP-------PKTSAYISQND- 254 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~-~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 254 (1449)
..+++||||++.+||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 46999999999999999999999999999999999999886 4568999999997654432 36799999996
Q ss_pred -ccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccc
Q 000517 255 -LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADT 333 (1449)
Q Consensus 255 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 333 (1449)
.+-|-+||.+.+.-..+..+...+ .+ ...++.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~---------~e------------------------a~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSR---------AE------------------------ARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccH---------HH------------------------HHHHHHHHHHHcCCCChhhh
Confidence 466779999988776665432211 00 11235678999999987655
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
+.+.+.|||||||||.||+||+.+|++|++|||||+||+.++.+|++.|+++.++.| +.++.++|+..-+.++||+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g-~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG-MAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC-cEEEEEcCCHHHHHHhcCe
Confidence 445667999999999999999999999999999999999999999999999987655 5555677888899999999
Q ss_pred EEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcChhhHhH
Q 000517 414 IILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKL 493 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 493 (1449)
|++|.+|++++.|+++++.+- | .+||.. .+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~--------p-------------------------~hpYT~-----------------~L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN--------P-------------------------QHPYTR-----------------GL 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc--------c-------------------------CCcccH-----------------HH
Confidence 999999999999999988641 1 111110 00
Q ss_pred HHHhcCcccCCCCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccccchh
Q 000517 494 DEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGN 573 (1449)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~ 573 (1449)
.+. .|.....
T Consensus 255 l~a--~p~~~~~-------------------------------------------------------------------- 264 (539)
T COG1123 255 LAA--VPRLGDE-------------------------------------------------------------------- 264 (539)
T ss_pred Hhh--CCCcccc--------------------------------------------------------------------
Confidence 000 0000000
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccHHH
Q 000517 574 YYMGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWR 653 (1449)
Q Consensus 574 ~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~~~ 653 (1449)
T Consensus 265 -------------------------------------------------------------------------------- 264 (539)
T COG1123 265 -------------------------------------------------------------------------------- 264 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHHHHHHh
Q 000517 654 FFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNE 733 (1449)
Q Consensus 654 f~~~~l~l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ne 733 (1449)
T Consensus 265 -------------------------------------------------------------------------------- 264 (539)
T COG1123 265 -------------------------------------------------------------------------------- 264 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCcccccCCCCccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccchhhhhhhcccc
Q 000517 734 FLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESE 813 (1449)
Q Consensus 734 f~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~~~~~~~~~~s~~~~~~~~~~~ 813 (1449)
..
T Consensus 265 ------~~------------------------------------------------------------------------ 266 (539)
T COG1123 265 ------KI------------------------------------------------------------------------ 266 (539)
T ss_pred ------cc------------------------------------------------------------------------
Confidence 00
Q ss_pred cCCCCCCcccCCCCCCCCCcccccCCccccCCCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEe
Q 000517 814 DSSYGEPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALM 893 (1449)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~ 893 (1449)
.... . . ... .. ..-++.+|++-++..+..+. ....+...+++||||++++||++||+
T Consensus 267 ---~~~~---~--~----~~~--~~-------~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglV 323 (539)
T COG1123 267 ---IRLP---R--R----GPL--RA-------EPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLV 323 (539)
T ss_pred ---cccc---c--c----ccc--cc-------CceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEE
Confidence 0000 0 0 000 00 00123333332222211000 00123456899999999999999999
Q ss_pred cCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC--c---cccccceEEEEccCC--CCCCCCCHHHHHHHHHHhccCCC
Q 000517 894 GVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK--V---QETFARVSGYCEQTD--IHSPNITVEESVIFSAWLRLAPE 966 (1449)
Q Consensus 894 G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~--~---~~~~~~~~gyv~Q~d--~~~~~lTv~e~l~f~~~lr~~~~ 966 (1449)
|+||||||||.++|+|...+ .+|+|.++|.+. . ....++.+-+++|++ .+.|.+||++.+.-.......
T Consensus 324 GeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~-- 399 (539)
T COG1123 324 GESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG-- 399 (539)
T ss_pred CCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--
Confidence 99999999999999998776 589999999762 1 123445566666665 678999999999876544332
Q ss_pred CChHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000517 967 INSKTKAEFVNEVLETIELDA-IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045 (1449)
Q Consensus 967 ~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~ 1045 (1449)
....++++++.++++.++|.. ..++. +.+||||||||++|||||+.+|++|++|||||.||+..+..|.++|++
T Consensus 400 ~~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~ 474 (539)
T COG1123 400 GSGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474 (539)
T ss_pred cchHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence 224566778999999999986 45555 358999999999999999999999999999999999999999999999
Q ss_pred HHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1046 IVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1046 l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
+.++ |.|.|++|||.+. +...|||+++|. .|++|+.||.
T Consensus 475 lq~e~g~t~lfISHDl~v-V~~i~drv~vm~-~G~iVE~G~~ 514 (539)
T COG1123 475 LQEELGLTYLFISHDLAV-VRYIADRVAVMY-DGRIVEEGPT 514 (539)
T ss_pred HHHHhCCEEEEEeCCHHH-HHhhCceEEEEE-CCeEEEeCCH
Confidence 9765 9999999999874 778899999998 5999999975
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-63 Score=670.70 Aligned_cols=216 Identities=22% Similarity=0.342 Sum_probs=178.5
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC-------------
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG------------- 914 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~------------- 914 (1449)
.++|+||+|+++.. .+..+|+|+||+|+||+++||+||||||||||+++|.|...+.
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 58999999987532 1246999999999999999999999999999999999976641
Q ss_pred ---------------------------------------eeEEEEEEcCccCcc---ccccceEEEEccCCCCCCCCCHH
Q 000517 915 ---------------------------------------YVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNITVE 952 (1449)
Q Consensus 915 ---------------------------------------~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~ 952 (1449)
+.+|+|.+||.++.+ ..+|+.+|||+|++.+| +.|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHH
Confidence 148999999998643 56788999999999887 57999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHHcCC-------cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000517 953 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-------DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1025 (1449)
Q Consensus 953 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLD 1025 (1449)
|||.|+. ++.+ ++.++++++..++ .+-.||.+|..|. .||||||||++|||||+++|+||+||
T Consensus 1314 eNI~~g~-----~~at----~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~-~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK-----EDAT----REDVKRACKFAAIDEFIESLPNKYDTNVGPYGK-SLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC-----CCCC----HHHHHHHHHHcCCHHHHHhCccccCCccCCCCC-cCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9998851 1222 2345666666554 4456899997654 59999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCccHHHHHhcCeEEEEecC---cEE-EEecCC
Q 000517 1026 EPTTGLDARAAAIVMRAVKNIV-NTGRTIVCTIHQPSIDIFEAFDELILLKTG---GRI-IYCGPL 1086 (1449)
Q Consensus 1026 EPTsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g---G~~-v~~G~~ 1086 (1449)
||||+||+.+.+.|++.|+++. .+++|+|+++|+++ ..+.+|++++|+++ |++ ++.|+-
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 9999999999999999999986 36899999999975 56789999999852 774 488874
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-63 Score=623.14 Aligned_cols=458 Identities=22% Similarity=0.322 Sum_probs=348.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--CCCeeeEEEECCccCCCCCC----CceEEEEcCCCccCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDP--SLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIA 258 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~--~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 258 (1449)
++|+|+|+++++|++++|+|||||||||||++|+|.++| + +|+|.++|+++..... ++.++||+|++.+++
T Consensus 19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (506)
T PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY---EGEIIFEGEELQASNIRDTERAGIAIIHQELALVK 95 (506)
T ss_pred EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence 599999999999999999999999999999999999986 5 8999999998754322 356999999988899
Q ss_pred CCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 259 EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
.+||+||+.++......+.. ..++ ....++++++.+||++..++.+++
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~-------~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~- 143 (506)
T PRK13549 96 ELSVLENIFLGNEITPGGIM-------DYDA------------------------MYLRAQKLLAQLKLDINPATPVGN- 143 (506)
T ss_pred CCcHHHHhhhcccccccCCc-------CHHH------------------------HHHHHHHHHHHcCCCCCcccchhh-
Confidence 99999999886432110000 0000 011346689999998888888876
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|++ +|+..++.++||+|++|+
T Consensus 144 ----LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~-tH~~~~~~~~~d~v~~l~ 217 (506)
T PRK13549 144 ----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYI-SHKLNEVKAISDTICVIR 217 (506)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCcHHHHHHhcCEEEEEE
Confidence 999999999999999999999999999999999999999999999865 46676665 566778889999999999
Q ss_pred CCeEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcChhhHhHHHHhc
Q 000517 419 EGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELL 498 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 498 (1449)
+|++++.|+.+++.. .+ ..+.
T Consensus 218 ~G~i~~~~~~~~~~~---------------~~-----------------------------~~~~--------------- 238 (506)
T PRK13549 218 DGRHIGTRPAAGMTE---------------DD-----------------------------IITM--------------- 238 (506)
T ss_pred CCEEeeecccccCCH---------------HH-----------------------------HHHH---------------
Confidence 999998876432200 00 0000
Q ss_pred CcccCCCCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhhhHH
Q 000517 499 VPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGS 578 (1449)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~g~ 578 (1449)
+. .
T Consensus 239 -------------------------------------------------------------~~--~-------------- 241 (506)
T PRK13549 239 -------------------------------------------------------------MV--G-------------- 241 (506)
T ss_pred -------------------------------------------------------------hh--C--------------
Confidence 00 0
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Q 000517 579 LYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQF 658 (1449)
Q Consensus 579 lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~ 658 (1449)
-.
T Consensus 242 --------------------------------------------------------------------~~---------- 243 (506)
T PRK13549 242 --------------------------------------------------------------------RE---------- 243 (506)
T ss_pred --------------------------------------------------------------------cC----------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHHHHHHhhcCCc
Q 000517 659 ILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPR 738 (1449)
Q Consensus 659 l~l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 738 (1449)
.+.
T Consensus 244 --------------------------------------------------~~~--------------------------- 246 (506)
T PRK13549 244 --------------------------------------------------LTA--------------------------- 246 (506)
T ss_pred --------------------------------------------------ccc---------------------------
Confidence 000
Q ss_pred ccccCCCCccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccchhhhhhhcccccCCCC
Q 000517 739 WQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYG 818 (1449)
Q Consensus 739 ~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 818 (1449)
.. + .
T Consensus 247 ---------------------------------------------------~~-~--~---------------------- 250 (506)
T PRK13549 247 ---------------------------------------------------LY-P--R---------------------- 250 (506)
T ss_pred ---------------------------------------------------cc-c--c----------------------
Confidence 00 0 0
Q ss_pred CCcccCCCCCCCCCcccccCCccccCCCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCC
Q 000517 819 EPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGA 898 (1449)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGa 898 (1449)
. . . .. + ...+.++|++++++. .+++.+|+|+||+|++||++||+|||||
T Consensus 251 -~---~--~---~~-----~-------~~~l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~G~NGs 299 (506)
T PRK13549 251 -E---P--H---TI-----G-------EVILEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIAGLVGA 299 (506)
T ss_pred -c---c--c---CC-----C-------CceEEEecCcccccc----------ccccccccceeeEEcCCcEEEEeCCCCC
Confidence 0 0 0 00 0 002455666543310 0124589999999999999999999999
Q ss_pred ChhHHHhhhcCCCCCCeeEEEEEEcCccCcc----ccccceEEEEccCC---CCCCCCCHHHHHHHHHHhccCC--CCCh
Q 000517 899 GKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ----ETFARVSGYCEQTD---IHSPNITVEESVIFSAWLRLAP--EINS 969 (1449)
Q Consensus 899 GKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~d---~~~~~lTv~e~l~f~~~lr~~~--~~~~ 969 (1449)
|||||+++|+|...+ +.+|+|.++|.+... ...++.+||++|++ .+++.+||.||+.+........ ....
T Consensus 300 GKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 378 (506)
T PRK13549 300 GRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDD 378 (506)
T ss_pred CHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccCh
Confidence 999999999997642 147999999976532 12345689999985 4678899999998753211110 0122
Q ss_pred HHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000517 970 KTKAEFVNEVLETIELD-AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN 1048 (1449)
Q Consensus 970 ~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~ 1048 (1449)
+...+.++++++.++|. +..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++
T Consensus 379 ~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 453 (506)
T PRK13549 379 AAELKTILESIQRLKVKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ 453 (506)
T ss_pred HHHHHHHHHHHHhcCccCCCcccccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH
Confidence 33446688999999996 56677654 7999999999999999999999999999999999999999999999988
Q ss_pred cCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCCC
Q 000517 1049 TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKH 1089 (1449)
Q Consensus 1049 ~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~~ 1089 (1449)
+|+|||++||+++ ++.+.+|++++|. +|+++..|+.++.
T Consensus 454 ~g~tvi~~sHd~~-~~~~~~d~v~~l~-~G~i~~~~~~~~~ 492 (506)
T PRK13549 454 QGVAIIVISSELP-EVLGLSDRVLVMH-EGKLKGDLINHNL 492 (506)
T ss_pred CCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEeccccC
Confidence 8999999999986 5778899999998 5899999987654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=621.17 Aligned_cols=450 Identities=21% Similarity=0.329 Sum_probs=346.2
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCccCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 260 (1449)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL 94 (501)
T ss_pred EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCC
Confidence 5899999999999999999999999999999999999997 9999999988753221 34699999999899999
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
||+||+.++......... ....+ ....++++++.+||++..|..+++
T Consensus 95 tv~e~l~~~~~~~~~~~~------~~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~--- 141 (501)
T PRK10762 95 TIAENIFLGREFVNRFGR------IDWKK------------------------MYAEADKLLARLNLRFSSDKLVGE--- 141 (501)
T ss_pred cHHHHhhhccccccccCc------cCHHH------------------------HHHHHHHHHHHcCCCCCccCchhh---
Confidence 999999986432110000 00000 011346689999999888888876
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ .+.|+|++ +|+.+++.++||+|++|++|
T Consensus 142 --LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~-sHd~~~~~~~~d~i~~l~~G 217 (501)
T PRK10762 142 --LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYI-SHRLKEIFEICDDVTVFRDG 217 (501)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999865 46666665 56677888999999999999
Q ss_pred eEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcChhhHhHHHHhcCc
Q 000517 421 KIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLVP 500 (1449)
Q Consensus 421 ~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 500 (1449)
+++..|+.+++.. ++..+.
T Consensus 218 ~i~~~~~~~~~~~--------------------------------------------~~~~~~----------------- 236 (501)
T PRK10762 218 QFIAEREVADLTE--------------------------------------------DSLIEM----------------- 236 (501)
T ss_pred EEEEecCcCcCCH--------------------------------------------HHHHHH-----------------
Confidence 9998775432100 000000
Q ss_pred ccCCCCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhhhHHHH
Q 000517 501 YDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLY 580 (1449)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~g~lf 580 (1449)
+. .
T Consensus 237 -----------------------------------------------------------~~--~---------------- 239 (501)
T PRK10762 237 -----------------------------------------------------------MV--G---------------- 239 (501)
T ss_pred -----------------------------------------------------------hc--C----------------
Confidence 00 0
Q ss_pred HHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHH
Q 000517 581 FSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFIL 660 (1449)
Q Consensus 581 f~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l~ 660 (1449)
.
T Consensus 240 ------------------------------------------------------------------~------------- 240 (501)
T PRK10762 240 ------------------------------------------------------------------R------------- 240 (501)
T ss_pred ------------------------------------------------------------------C-------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHHHHHHhhcCCccc
Q 000517 661 LFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRWQ 740 (1449)
Q Consensus 661 l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~ 740 (1449)
..
T Consensus 241 -----------------------------------------------~~------------------------------- 242 (501)
T PRK10762 241 -----------------------------------------------KL------------------------------- 242 (501)
T ss_pred -----------------------------------------------Cc-------------------------------
Confidence 00
Q ss_pred ccCCCCccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccchhhhhhhcccccCCCCCC
Q 000517 741 KMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEP 820 (1449)
Q Consensus 741 ~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 820 (1449)
.. . .+
T Consensus 243 ------------------------------------------------------~~-------------------~--~~ 247 (501)
T PRK10762 243 ------------------------------------------------------ED-------------------Q--YP 247 (501)
T ss_pred ------------------------------------------------------cc-------------------c--cc
Confidence 00 0 00
Q ss_pred cccCCCCCCCCCcccccCCccccCCCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCCh
Q 000517 821 VKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGK 900 (1449)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGK 900 (1449)
. . . .. . .+..+.++|++. .+|+|+||+|++||+++|+|||||||
T Consensus 248 ~--~--~---~~----~-------~~~~l~~~~l~~------------------~~l~~vsl~i~~Ge~~~liG~NGsGK 291 (501)
T PRK10762 248 R--L--D---KA----P-------GEVRLKVDNLSG------------------PGVNDVSFTLRKGEILGVSGLMGAGR 291 (501)
T ss_pred c--c--c---cC----C-------CCcEEEEeCccc------------------CCcccceEEEcCCcEEEEecCCCCCH
Confidence 0 0 0 00 0 001245555541 26999999999999999999999999
Q ss_pred hHHHhhhcCCCCCCeeEEEEEEcCccCcc----ccccceEEEEccCC---CCCCCCCHHHHHHHHHHhccC---CCCChH
Q 000517 901 TTLMDVLAGRKTSGYVEGEIKISGYPKVQ----ETFARVSGYCEQTD---IHSPNITVEESVIFSAWLRLA---PEINSK 970 (1449)
Q Consensus 901 STLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~d---~~~~~lTv~e~l~f~~~lr~~---~~~~~~ 970 (1449)
|||+++|+|...+ .+|+|.++|.+... ...++.+||++|++ .+++.+||.|++.+....... .....+
T Consensus 292 STLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 369 (501)
T PRK10762 292 TELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHA 369 (501)
T ss_pred HHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHH
Confidence 9999999998655 48999999976532 12345799999995 477889999999875321110 001223
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 000517 971 TKAEFVNEVLETIELD-AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT 1049 (1449)
Q Consensus 971 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~ 1049 (1449)
..++.++++++.++|. +..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 370 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 444 (501)
T PRK10762 370 DEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE 444 (501)
T ss_pred HHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC
Confidence 3446688999999995 56777754 79999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCCC
Q 000517 1050 GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKH 1089 (1449)
Q Consensus 1050 g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~~ 1089 (1449)
|.|||++||++. .+.+.+|++++|. +|+++..|+..+.
T Consensus 445 g~tviivtHd~~-~~~~~~d~v~~l~-~G~i~~~~~~~~~ 482 (501)
T PRK10762 445 GLSIILVSSEMP-EVLGMSDRILVMH-EGRISGEFTREQA 482 (501)
T ss_pred CCEEEEEcCCHH-HHHhhCCEEEEEE-CCEEEEEeccccC
Confidence 999999999986 5778899999998 5899999987653
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-63 Score=623.36 Aligned_cols=457 Identities=21% Similarity=0.303 Sum_probs=346.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCccCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 260 (1449)
++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.+
T Consensus 19 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (510)
T PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95 (510)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence 5899999999999999999999999999999999999987 9999999998764332 24699999999889999
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
||+||+.++...... .... ...... +....++.+++.+||.+..|+.+++
T Consensus 96 tv~e~l~~~~~~~~~--~~~~-~~~~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~--- 145 (510)
T PRK09700 96 TVLENLYIGRHLTKK--VCGV-NIIDWR------------------------EMRVRAAMMLLRVGLKVDLDEKVAN--- 145 (510)
T ss_pred cHHHHhhhccccccc--cccc-cccCHH------------------------HHHHHHHHHHHHcCCCCCcccchhh---
Confidence 999999875321000 0000 000000 0012356789999999888888876
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .++|+|++ +|+..++.++||+|++|++|
T Consensus 146 --LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiiv-sHd~~~~~~~~d~v~~l~~G 221 (510)
T PRK09700 146 --LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYI-SHKLAEIRRICDRYTVMKDG 221 (510)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-eCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999976 46676664 56678888999999999999
Q ss_pred eEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcChhhHhHHHHhcCc
Q 000517 421 KIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLVP 500 (1449)
Q Consensus 421 ~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 500 (1449)
++++.|+++++.. . +..+ .
T Consensus 222 ~i~~~g~~~~~~~---------------~-----------------------------~~~~-------------~---- 240 (510)
T PRK09700 222 SSVCSGMVSDVSN---------------D-----------------------------DIVR-------------L---- 240 (510)
T ss_pred EEeeecchhhCCH---------------H-----------------------------HHHH-------------H----
Confidence 9998887543210 0 0000 0
Q ss_pred ccCCCCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhhhHHHH
Q 000517 501 YDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLY 580 (1449)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~g~lf 580 (1449)
+.....
T Consensus 241 -----------------------------------------------------------~~~~~~--------------- 246 (510)
T PRK09700 241 -----------------------------------------------------------MVGREL--------------- 246 (510)
T ss_pred -----------------------------------------------------------hcCCCc---------------
Confidence 000000
Q ss_pred HHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHH
Q 000517 581 FSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFIL 660 (1449)
Q Consensus 581 f~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l~ 660 (1449)
.
T Consensus 247 -------------------------------------------------------------------~------------ 247 (510)
T PRK09700 247 -------------------------------------------------------------------Q------------ 247 (510)
T ss_pred -------------------------------------------------------------------c------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHHHHHHhhcCCccc
Q 000517 661 LFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRWQ 740 (1449)
Q Consensus 661 l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~ 740 (1449)
+ .+
T Consensus 248 --------------------------------------------~---------------------------~~------ 250 (510)
T PRK09700 248 --------------------------------------------N---------------------------RF------ 250 (510)
T ss_pred --------------------------------------------c---------------------------cc------
Confidence 0 00
Q ss_pred ccCCCCccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccchhhhhhhcccccCCCCCC
Q 000517 741 KMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEP 820 (1449)
Q Consensus 741 ~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 820 (1449)
. .. .+
T Consensus 251 -------------------------------------------------------~------------------~~--~~ 255 (510)
T PRK09700 251 -------------------------------------------------------N------------------AM--KE 255 (510)
T ss_pred -------------------------------------------------------c------------------cc--cc
Confidence 0 00 00
Q ss_pred cccCCCCCCCCCcccccCCccccCCCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCCh
Q 000517 821 VKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGK 900 (1449)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGK 900 (1449)
. . . .. .+ +..+.++|++... ..+|+|+|++|++||+++|+|||||||
T Consensus 256 ~--~--~---~~----~~-------~~~l~~~~l~~~~---------------~~~l~~isl~i~~Ge~~~l~G~NGsGK 302 (510)
T PRK09700 256 N--V--S---NL----AH-------ETVFEVRNVTSRD---------------RKKVRDISFSVCRGEILGFAGLVGSGR 302 (510)
T ss_pred c--c--c---cC----CC-------CcEEEEeCccccC---------------CCcccceeEEEcCCcEEEEECCCCCCH
Confidence 0 0 0 00 00 0135666665321 128999999999999999999999999
Q ss_pred hHHHhhhcCCCCCCeeEEEEEEcCccCcc----ccccceEEEEccC---CCCCCCCCHHHHHHHHHHhc---cCC--C-C
Q 000517 901 TTLMDVLAGRKTSGYVEGEIKISGYPKVQ----ETFARVSGYCEQT---DIHSPNITVEESVIFSAWLR---LAP--E-I 967 (1449)
Q Consensus 901 STLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~---d~~~~~lTv~e~l~f~~~lr---~~~--~-~ 967 (1449)
|||+++|+|...+ .+|+|.++|.+... ...++.+||++|+ ..+++.+||.||+.+....+ ... . .
T Consensus 303 STLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 380 (510)
T PRK09700 303 TELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLF 380 (510)
T ss_pred HHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccccccccccccccccc
Confidence 9999999998654 48999999976532 1234578999998 45788999999998753211 000 0 1
Q ss_pred ChHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000517 968 NSKTKAEFVNEVLETIELD-AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046 (1449)
Q Consensus 968 ~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l 1046 (1449)
.....++.++++++.++|. +..++.++ .|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|+++
T Consensus 381 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l 455 (510)
T PRK09700 381 HEVDEQRTAENQRELLALKCHSVNQNIT-----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQL 455 (510)
T ss_pred ChHHHHHHHHHHHHhcCCCCCCccCccc-----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHH
Confidence 1223335678999999996 67777764 79999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1047 VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1047 ~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
+++|.|||++|||+. .+.+.+|++++|. +|+++..++.
T Consensus 456 ~~~g~tvi~vsHd~~-~~~~~~d~i~~l~-~G~i~~~~~~ 493 (510)
T PRK09700 456 ADDGKVILMVSSELP-EIITVCDRIAVFC-EGRLTQILTN 493 (510)
T ss_pred HHCCCEEEEEcCCHH-HHHhhCCEEEEEE-CCEEEEEecC
Confidence 878999999999986 5778899999997 5899988875
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-62 Score=667.95 Aligned_cols=211 Identities=20% Similarity=0.243 Sum_probs=178.2
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++|+|++++++.. ...+|+|||++|+|||++||+|+||||||||+++|.|..++ .+|+|.|||.++
T Consensus 1284 ~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~dI 1350 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGLNI 1350 (1522)
T ss_pred cEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCEEc
Confidence 58899998877421 13599999999999999999999999999999999997665 589999999986
Q ss_pred cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000517 928 VQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-------IKDSLVGIPG 997 (1449)
Q Consensus 928 ~~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 997 (1449)
.+ ..+|+.++||||++.+|.. |++|||.... + ..++.++++++..++.+ -.|+.+|..|
T Consensus 1351 ~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~----~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1419 (1522)
T TIGR00957 1351 AKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------Q----YSDEEVWWALELAHLKTFVSALPDKLDHECAEGG 1419 (1522)
T ss_pred cccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------C----CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCC
Confidence 43 5678899999999999875 9999995210 1 22345778888887754 3577787655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
. .||||||||++|||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....+|+|++|+ +
T Consensus 1420 ~-~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld-~ 1494 (1522)
T TIGR00957 1420 E-NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLD-K 1494 (1522)
T ss_pred C-cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE-C
Confidence 4 699999999999999999999999999999999999999999999864 5899999999975 567899999998 5
Q ss_pred cEEEEecCCC
Q 000517 1078 GRIIYCGPLG 1087 (1449)
Q Consensus 1078 G~~v~~G~~~ 1087 (1449)
|++++.|++.
T Consensus 1495 G~IvE~G~~~ 1504 (1522)
T TIGR00957 1495 GEVAEFGAPS 1504 (1522)
T ss_pred CEEEEECCHH
Confidence 9999999873
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-63 Score=630.89 Aligned_cols=488 Identities=22% Similarity=0.264 Sum_probs=351.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCC----------CCC-------CCce
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLE----------EFV-------PPKT 246 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~----------~~~-------~~~~ 246 (1449)
.++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|..+. ... .++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999987 899999986431 100 1246
Q ss_pred EEEEcCCC--ccCCCCCHHHHHHHHHHcc-CCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHH
Q 000517 247 SAYISQND--LHIAEMTVRETVDFSARCQ-GVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILK 323 (1449)
Q Consensus 247 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~ 323 (1449)
++||+|++ .+++.+||+||+.++.+.. +.. +.+ ...+++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~----------~~~------------------------~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS----------REE------------------------AMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHH
Confidence 99999987 5788999999999976532 110 000 0123567899
Q ss_pred HhCCCc---cccccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEE
Q 000517 324 ILGLDV---CADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISL 400 (1449)
Q Consensus 324 ~lgL~~---~~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~ 400 (1449)
.+||++ ..+..+.+ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++..+.|+|+ +
T Consensus 152 ~~gL~~~~~~~~~~~~~-----LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~-i 225 (623)
T PRK10261 152 QVRIPEAQTILSRYPHQ-----LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIF-I 225 (623)
T ss_pred HCCCCChhhHHhCCCcc-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEE-E
Confidence 999964 35666665 99999999999999999999999999999999999999999999997655666555 5
Q ss_pred ecCchhHHhhcCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHHH
Q 000517 401 LQPAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMF 480 (1449)
Q Consensus 401 ~q~~~~~~~~fD~v~lL~~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~ 480 (1449)
+|...++.++||+|++|++|++++.|+++++.. .|.+.-..+++
T Consensus 226 tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l~---------------------------- 269 (623)
T PRK10261 226 THDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRALL---------------------------- 269 (623)
T ss_pred cCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhhh----------------------------
Confidence 677888899999999999999999998766521 00000000000
Q ss_pred HHHHhcChhhHhHHHHhcCcccCCCCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 000517 481 SKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVF 560 (1449)
Q Consensus 481 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf 560 (1449)
+ . .+
T Consensus 270 -~-------------~--~~------------------------------------------------------------ 273 (623)
T PRK10261 270 -A-------------A--VP------------------------------------------------------------ 273 (623)
T ss_pred -h-------------c--cC------------------------------------------------------------
Confidence 0 0 00
Q ss_pred hcccCCccccchhhhhHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000517 561 LRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCL 640 (1449)
Q Consensus 561 ~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i 640 (1449)
.... .
T Consensus 274 ---~~~~--~---------------------------------------------------------------------- 278 (623)
T PRK10261 274 ---QLGA--M---------------------------------------------------------------------- 278 (623)
T ss_pred ---cccc--c----------------------------------------------------------------------
Confidence 0000 0
Q ss_pred HHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHc
Q 000517 641 TYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWIS 720 (1449)
Q Consensus 641 ~Y~~~gl~~~~~~f~~~~l~l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~is 720 (1449)
.|-. .+ ...|.
T Consensus 279 ----~~~~-------------------------------------------------------~~-~~~~~--------- 289 (623)
T PRK10261 279 ----KGLD-------------------------------------------------------YP-RRFPL--------- 289 (623)
T ss_pred ----cccc-------------------------------------------------------CC-ccccc---------
Confidence 0000 00 00000
Q ss_pred HHHHHHHHHHHHhhcCCcccccCCCCccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccc
Q 000517 721 PVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVM 800 (1449)
Q Consensus 721 p~~y~~~al~~nef~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~~~~~~~~~ 800 (1449)
..
T Consensus 290 ---------------------------------------------------------------------------~~--- 291 (623)
T PRK10261 290 ---------------------------------------------------------------------------IS--- 291 (623)
T ss_pred ---------------------------------------------------------------------------cc---
Confidence 00
Q ss_pred cchhhhhhhcccccCCCCCCcccCCCCCCCCCcccccCCccccCCCcEEEEecceeeeecccchhccccccccceeeccc
Q 000517 801 ISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDV 880 (1449)
Q Consensus 801 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 880 (1449)
. . . .....+.. . . ... ..+ ...+.++|+++.++..... .....+...+|+||
T Consensus 292 -~-~-------~--~~~~~~~~-~--~---~~~--~~~-------~~~L~~~~l~~~y~~~~~~--~~~~~~~~~~l~~v 343 (623)
T PRK10261 292 -L-E-------H--PAKQEPPI-E--Q---DTV--VDG-------EPILQVRNLVTRFPLRSGL--LNRVTREVHAVEKV 343 (623)
T ss_pred -c-c-------c--ccccCccc-c--c---ccc--cCC-------CceEEEeeeEEEEcCCCcc--ccccCCceEEEeee
Confidence 0 0 0 00000000 0 0 000 000 0136677777655311000 00000124699999
Q ss_pred eeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc------ccccceEEEEccCC--CCCCCCCHH
Q 000517 881 TGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ------ETFARVSGYCEQTD--IHSPNITVE 952 (1449)
Q Consensus 881 s~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~~~~~~gyv~Q~d--~~~~~lTv~ 952 (1449)
||+|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++.. ..+++.++|++|++ .+++.+||.
T Consensus 344 s~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~ 421 (623)
T PRK10261 344 SFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVG 421 (623)
T ss_pred EeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHH
Confidence 999999999999999999999999999998654 58999999986532 12456799999997 578899999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000517 953 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031 (1449)
Q Consensus 953 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgL 1031 (1449)
|++.+....+. ....+..++.+.++++.+||. +..++.++ .|||||||||+|||||+.+|+||||||||+||
T Consensus 422 ~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~-----~LSgGqrQRv~iAraL~~~p~llllDEPts~L 494 (623)
T PRK10261 422 DSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYPH-----EFSGGQRQRICIARALALNPKVIIADEAVSAL 494 (623)
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99987654321 112334456788999999996 55666654 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1032 DARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1032 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
|+.++..+++.|++++++ |.|||++||+++ .+...+|++++|. +|++++.|+..
T Consensus 495 D~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~-~G~iv~~g~~~ 549 (623)
T PRK10261 495 DVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMY-LGQIVEIGPRR 549 (623)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEecCHH
Confidence 999999999999999765 899999999986 5778899999997 58999999864
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=618.14 Aligned_cols=464 Identities=21% Similarity=0.275 Sum_probs=344.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC--CeeeEEEECCccCCCCCC-------CceEEEEcCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL--KVTGEVSYNGYKLEEFVP-------PKTSAYISQND 254 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 254 (1449)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|+++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 469999999999999999999999999999999999998620 138999999998754321 24699999986
Q ss_pred c--cCCCCCHHHHHHHHHHcc-CCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc--
Q 000517 255 L--HIAEMTVRETVDFSARCQ-GVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV-- 329 (1449)
Q Consensus 255 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~-- 329 (1449)
. +.+.+||+|++.+..... +.. +.+ ...+++++++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------REA------------------------ARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHCCCCChH
Confidence 4 567789999988654321 110 000 0123567899999975
Q ss_pred -cccccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHH
Q 000517 330 -CADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETF 408 (1449)
Q Consensus 330 -~~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~ 408 (1449)
..|+.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++ +|...++.
T Consensus 148 ~~~~~~~~~-----LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~v-tHd~~~~~ 221 (529)
T PRK15134 148 KRLTDYPHQ-----LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFI-THNLSIVR 221 (529)
T ss_pred HHHhhCCcc-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEE-cCcHHHHH
Confidence 34777765 999999999999999999999999999999999999999999999876546676665 56677888
Q ss_pred hhcCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcCh
Q 000517 409 DLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESP 488 (1449)
Q Consensus 409 ~~fD~v~lL~~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 488 (1449)
++||+|++|++|++++.|+++++... |.. +
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~~-------------------------~----------------- 251 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PTH-------------------------P----------------- 251 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CCC-------------------------H-----------------
Confidence 99999999999999999876554210 000 0
Q ss_pred hhHhHHHHhcCcccCCCCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCcc
Q 000517 489 LVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEID 568 (1449)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~ 568 (1449)
+ . +. ++...
T Consensus 252 ---------------------------~-------~-----~~----------------------------~~~~~---- 260 (529)
T PRK15134 252 ---------------------------Y-------T-----QK----------------------------LLNSE---- 260 (529)
T ss_pred ---------------------------H-------H-----HH----------------------------HHHhC----
Confidence 0 0 00 00000
Q ss_pred ccchhhhhHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCc
Q 000517 569 VFHGNYYMGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYS 648 (1449)
Q Consensus 569 ~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~ 648 (1449)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHH
Q 000517 649 PEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIG 728 (1449)
Q Consensus 649 ~~~~~f~~~~l~l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~a 728 (1449)
+
T Consensus 261 -------------------------------------------------------------~------------------ 261 (529)
T PRK15134 261 -------------------------------------------------------------P------------------ 261 (529)
T ss_pred -------------------------------------------------------------c------------------
Confidence 0
Q ss_pred HHHHhhcCCcccccCCCCccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccchhhhhh
Q 000517 729 LSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAK 808 (1449)
Q Consensus 729 l~~nef~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~~~~~~~~~~s~~~~~~ 808 (1449)
..
T Consensus 262 ------------------------------------------------------------------~~------------ 263 (529)
T PRK15134 262 ------------------------------------------------------------------SG------------ 263 (529)
T ss_pred ------------------------------------------------------------------cc------------
Confidence 00
Q ss_pred hcccccCCCCCCcccCCCCCCCCCcccccCCccccCCCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCe
Q 000517 809 MQESEDSSYGEPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGV 888 (1449)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge 888 (1449)
. .. . . . .. +.. .+.++|+++.++...+. .+...+.+.+|+|||++|++||
T Consensus 264 ------~-~~-~---~--~---~~-----~~~-------~l~~~~l~~~~~~~~~~--~~~~~~~~~il~~isl~i~~Ge 313 (529)
T PRK15134 264 ------D-PV-P---L--P---EP-----ASP-------LLDVEQLQVAFPIRKGI--LKRTVDHNVVVKNISFTLRPGE 313 (529)
T ss_pred ------c-cc-c---c--C---CC-----CCC-------cccccCcEEEeecCccc--cccccccceeeecceeEEcCCC
Confidence 0 00 0 0 0 00 000 13344454433210000 0000012469999999999999
Q ss_pred EEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---c---cccceEEEEccCC--CCCCCCCHHHHHHHHHH
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---E---TFARVSGYCEQTD--IHSPNITVEESVIFSAW 960 (1449)
Q Consensus 889 ~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~---~~~~~~gyv~Q~d--~~~~~lTv~e~l~f~~~ 960 (1449)
++||+||||||||||+++|+|... .+|+|.++|.++.. . .+++.+||++|++ .+++.+||.||+.+...
T Consensus 314 ~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~ 390 (529)
T PRK15134 314 TLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLR 390 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHH
Confidence 999999999999999999999763 47999999976532 1 1356789999996 47788999999988653
Q ss_pred hccCCCCChHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 000517 961 LRLAPEINSKTKAEFVNEVLETIELD-AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1039 (1449)
Q Consensus 961 lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i 1039 (1449)
.+.. .......++.++++++.++|. +..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+
T Consensus 391 ~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 464 (529)
T PRK15134 391 VHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYPA-----EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464 (529)
T ss_pred hccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCCc-----cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHH
Confidence 3211 122334456788999999997 45666653 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1040 MRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1040 ~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
++.|++++++ |+|||++||++. .+.+.+|++++|. +|+++..|+.
T Consensus 465 ~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~-~G~i~~~~~~ 510 (529)
T PRK15134 465 LALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLR-QGEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEE-CCEEEEEcCH
Confidence 9999999865 899999999986 4778899999998 5899999875
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=614.14 Aligned_cols=454 Identities=20% Similarity=0.285 Sum_probs=344.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCccCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIAE 259 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1449)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 35899999999999999999999999999999999999997 9999999988754322 2468999999999999
Q ss_pred CCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccc
Q 000517 260 MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAM 339 (1449)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 339 (1449)
+||+||+.|.... . . + ....++++++.+||++..++.+++
T Consensus 101 ~tv~e~l~~~~~~-----~--------~-~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (510)
T PRK15439 101 LSVKENILFGLPK-----R--------Q-A------------------------SMQKMKQLLAALGCQLDLDSSAGS-- 140 (510)
T ss_pred CcHHHHhhccccc-----c--------h-H------------------------HHHHHHHHHHHcCCCccccCChhh--
Confidence 9999999875310 0 0 0 011245688999999888888876
Q ss_pred cccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeC
Q 000517 340 RRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419 (1449)
Q Consensus 340 ~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~ 419 (1449)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++ +|..+++.++||+|++|++
T Consensus 141 ---LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiv-tHd~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 141 ---LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFI-SHKLPEIRQLADRISVMRD 215 (510)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999875 46666665 5667788899999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcChhhHhHHHHhcC
Q 000517 420 GKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLV 499 (1449)
Q Consensus 420 G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 499 (1449)
|++++.|+.+++... +. .+.+.. .
T Consensus 216 G~i~~~g~~~~~~~~---------------~~-----------------------------~~~~~~------------~ 239 (510)
T PRK15439 216 GTIALSGKTADLSTD---------------DI-----------------------------IQAITP------------A 239 (510)
T ss_pred CEEEEecChHHcCHH---------------HH-----------------------------HHHHhC------------c
Confidence 999999987654210 00 000000 0
Q ss_pred cccCCCCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhhhHHH
Q 000517 500 PYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSL 579 (1449)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~g~l 579 (1449)
... .....
T Consensus 240 -----~~~-------------------------------------------------------~~~~~------------ 247 (510)
T PRK15439 240 -----ARE-------------------------------------------------------KSLSA------------ 247 (510)
T ss_pred -----ccc-------------------------------------------------------ccccc------------
Confidence 000 00000
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Q 000517 580 YFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFI 659 (1449)
Q Consensus 580 ff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l 659 (1449)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK15439 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHHHHHHhhcCCcc
Q 000517 660 LLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRW 739 (1449)
Q Consensus 660 ~l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~ 739 (1449)
... .
T Consensus 248 -------------------------------------------------~~~---------------------------~ 251 (510)
T PRK15439 248 -------------------------------------------------SQK---------------------------L 251 (510)
T ss_pred -------------------------------------------------ccc---------------------------c
Confidence 000 0
Q ss_pred cccCCCCccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccchhhhhhhcccccCCCCC
Q 000517 740 QKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGE 819 (1449)
Q Consensus 740 ~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 819 (1449)
. ..+ +
T Consensus 252 ~----------------~~~-----------------------------------------------------------~ 256 (510)
T PRK15439 252 W----------------LEL-----------------------------------------------------------P 256 (510)
T ss_pred c----------------ccc-----------------------------------------------------------c
Confidence 0 000 0
Q ss_pred CcccCCCCCCCCCcccccCCccccCCCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCC
Q 000517 820 PVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAG 899 (1449)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaG 899 (1449)
.. . . ..+ .+ +..+..+|++. .+|+|||++|++||++||+||||||
T Consensus 257 ~~--~--~---~~~---~~-------~~~l~~~~l~~------------------~~l~~isl~i~~Ge~~~l~G~NGsG 301 (510)
T PRK15439 257 GN--R--R---QQA---AG-------APVLTVEDLTG------------------EGFRNISLEVRAGEILGLAGVVGAG 301 (510)
T ss_pred cc--c--c---ccC---CC-------CceEEEeCCCC------------------CCccceeEEEcCCcEEEEECCCCCC
Confidence 00 0 0 000 00 01255666541 1589999999999999999999999
Q ss_pred hhHHHhhhcCCCCCCeeEEEEEEcCccCccc----cccceEEEEccCC---CCCCCCCHHHHHHHHHHhccCCCCChHHH
Q 000517 900 KTTLMDVLAGRKTSGYVEGEIKISGYPKVQE----TFARVSGYCEQTD---IHSPNITVEESVIFSAWLRLAPEINSKTK 972 (1449)
Q Consensus 900 KSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q~d---~~~~~lTv~e~l~f~~~lr~~~~~~~~~~ 972 (1449)
||||+++|+|...+ .+|+|.++|.++... ..++.++|++|++ .+++.+|+.|++......+..........
T Consensus 302 KSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~ 379 (510)
T PRK15439 302 RTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE 379 (510)
T ss_pred HHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH
Confidence 99999999997654 479999999865321 1345689999984 47788999999864211111100112223
Q ss_pred HHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 000517 973 AEFVNEVLETIELD-AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGR 1051 (1449)
Q Consensus 973 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~ 1051 (1449)
++.++++++.++|. +..++.++ .|||||||||+||++|+.+|+||||||||+|||+.+...+++.|++++++|.
T Consensus 380 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~ 454 (510)
T PRK15439 380 NAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNV 454 (510)
T ss_pred HHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCC
Confidence 45688999999997 66777754 7999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCC
Q 000517 1052 TIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGK 1088 (1449)
Q Consensus 1052 tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~ 1088 (1449)
|||++||+++ ++.+.+|++++|. +|+++..|..++
T Consensus 455 tiIivsHd~~-~i~~~~d~i~~l~-~G~i~~~~~~~~ 489 (510)
T PRK15439 455 AVLFISSDLE-EIEQMADRVLVMH-QGEISGALTGAA 489 (510)
T ss_pred EEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEcccc
Confidence 9999999986 5778899999997 589999887754
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=614.95 Aligned_cols=445 Identities=22% Similarity=0.305 Sum_probs=341.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCCCeeeEEEECC-----------------------ccC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNL--DPSLKVTGEVSYNG-----------------------YKL 238 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l--~~~~~~~G~V~~~G-----------------------~~~ 238 (1449)
+++|+|+|+.+.+|++++|+|||||||||||++|+|.+ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999997 576 89999972 221
Q ss_pred C-------CC------CCCceEEEEcCC-CccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHH
Q 000517 239 E-------EF------VPPKTSAYISQN-DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304 (1449)
Q Consensus 239 ~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~ 304 (1449)
. .. ..++.++|++|+ +.+++.+||+||+.|+....+.. ..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~----------~~~--------------- 144 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE----------GKE--------------- 144 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC----------HHH---------------
Confidence 1 00 013468999997 67888999999999865432210 000
Q ss_pred HHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 000517 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIAC 384 (1449)
Q Consensus 305 ~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~ 384 (1449)
.+.+++.+++.+||++..+..+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.
T Consensus 145 ---------~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 145 ---------AVGRAVDLIEMVQLSHRITHIARD-----LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred ---------HHHHHHHHHHHcCChhhhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 012356789999998887887766 999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhh
Q 000517 385 IQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQF 464 (1449)
Q Consensus 385 L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~ 464 (1449)
|+++++..+.|+|++ +|....+.++||+|++|++|++++.|+++++.+.+.
T Consensus 211 l~~l~~~~g~tviiv-tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~---------------------------- 261 (520)
T TIGR03269 211 LEEAVKASGISMVLT-SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFM---------------------------- 261 (520)
T ss_pred HHHHHHhcCcEEEEE-eCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHH----------------------------
Confidence 999876556676655 566777888999999999999988776543211000
Q ss_pred hcccCCCCccCCHHHHHHHHhcChhhHhHHHHhcCcccCCCCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHH
Q 000517 465 WLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVF 544 (1449)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~ 544 (1449)
T Consensus 262 -------------------------------------------------------------------------------- 261 (520)
T TIGR03269 262 -------------------------------------------------------------------------------- 261 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhcccCCccccchhhhhHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHHHHHHHH
Q 000517 545 KTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATI 624 (1449)
Q Consensus 545 ~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l 624 (1449)
. ..
T Consensus 262 ----------------~--~~----------------------------------------------------------- 264 (520)
T TIGR03269 262 ----------------E--GV----------------------------------------------------------- 264 (520)
T ss_pred ----------------h--hc-----------------------------------------------------------
Confidence 0 00
Q ss_pred HHhhHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccc
Q 000517 625 LKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVI 704 (1449)
Q Consensus 625 ~~lP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l~l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i 704 (1449)
. +
T Consensus 265 -----------------------~----~--------------------------------------------------- 266 (520)
T TIGR03269 265 -----------------------S----E--------------------------------------------------- 266 (520)
T ss_pred -----------------------h----h---------------------------------------------------
Confidence 0 0
Q ss_pred cCCChhHHHHHHHhHcHHHHHHHHHHHHhhcCCcccccCCCCccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHH
Q 000517 705 SRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGF 784 (1449)
Q Consensus 705 ~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~ 784 (1449)
+
T Consensus 267 ----~--------------------------------------------------------------------------- 267 (520)
T TIGR03269 267 ----V--------------------------------------------------------------------------- 267 (520)
T ss_pred ----h---------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHhccccCCCccccchhhhhhhcccccCCCCCCcccCCCCCCCCCcccccCCccccCCCcEEEEecceeeeecccch
Q 000517 785 TLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEM 864 (1449)
Q Consensus 785 ~laL~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 864 (1449)
... . . . .. + ...++++|+++.++..
T Consensus 268 ----------~~~----------------------~---~--~---~~-----~-------~~~l~~~~l~~~~~~~--- 292 (520)
T TIGR03269 268 ----------EKE----------------------C---E--V---EV-----G-------EPIIKVRNVSKRYISV--- 292 (520)
T ss_pred ----------ccc----------------------c---c--c---CC-----C-------CceEEEeccEEEeccC---
Confidence 000 0 0 0 00 0 0025566766654210
Q ss_pred hccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEc-Ccc---Ccc------ccccc
Q 000517 865 RERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKIS-GYP---KVQ------ETFAR 934 (1449)
Q Consensus 865 ~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~-G~~---~~~------~~~~~ 934 (1449)
..+++.+|+|+||+|++||+++|+||||||||||+++|+|...+ .+|+|.++ |.+ ... ...++
T Consensus 293 -----~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~~~~~~~~~~~~~~~~~ 365 (520)
T TIGR03269 293 -----DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEWVDMTKPGPDGRGRAKR 365 (520)
T ss_pred -----CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCccccccccchhhHHHHhh
Confidence 01124699999999999999999999999999999999998654 48999996 532 111 12345
Q ss_pred eEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-----cccccccCCCCCCCCHHHHHHH
Q 000517 935 VSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-----IKDSLVGIPGVNGLSTEQRKRL 1009 (1449)
Q Consensus 935 ~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-----~~~~~vg~~~~~~LSgGqrqRl 1009 (1449)
.+||++|++.+++.+||.|++.+...+. ...+..++.+.++++.++|.+ ..++.+ ..|||||||||
T Consensus 366 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~~LSgGq~qrv 436 (520)
T TIGR03269 366 YIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYP-----DELSEGERHRV 436 (520)
T ss_pred hEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh-----hhCCHHHHHHH
Confidence 6899999988889999999998754321 122334466889999999975 345554 37999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1010 TIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1010 ~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
+|||||+.+|+||+|||||+|||+.+...+++.|++++++ |.|||++||++. .+.+.+|++++|. +|+++..|++
T Consensus 437 ~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~-~G~i~~~g~~ 512 (520)
T TIGR03269 437 ALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMR-DGKIVKIGDP 512 (520)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 9999999999999999999999999999999999999764 899999999986 5778899999997 5899998875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-62 Score=609.47 Aligned_cols=460 Identities=20% Similarity=0.310 Sum_probs=344.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCccCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIAE 259 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1449)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 35899999999999999999999999999999999998861 128999999988764321 3469999999989999
Q ss_pred CCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccc-ccccccc
Q 000517 260 MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCA-DTMVGNA 338 (1449)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~-dt~vg~~ 338 (1449)
+||+||+.++......+... ..++ ....++.+++.+||.+.. ++.+++
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~------~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~~- 141 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRM------AYNA------------------------MYLRAKNLLRELQLDADNVTRPVGD- 141 (500)
T ss_pred CcHHHHHHhhcccccccccc------CHHH------------------------HHHHHHHHHHHcCCCCCcccCchhh-
Confidence 99999998864321000000 0000 011346689999998654 566765
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++ +|+..++.++||+|++|+
T Consensus 142 ----LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviii-tHd~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 142 ----YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYI-SHKLNEVKAVCDTICVIR 215 (500)
T ss_pred ----CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-eCcHHHHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999999999875 46666654 566788889999999999
Q ss_pred CCeEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcChhhHhHHHHhc
Q 000517 419 EGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELL 498 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 498 (1449)
+|++++.|+.++... .... +
T Consensus 216 ~G~i~~~~~~~~~~~--------------------------------------------~~~~-------------~--- 235 (500)
T TIGR02633 216 DGQHVATKDMSTMSE--------------------------------------------DDII-------------T--- 235 (500)
T ss_pred CCeEeeecCcccCCH--------------------------------------------HHHH-------------H---
Confidence 999987664221000 0000 0
Q ss_pred CcccCCCCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhhhHH
Q 000517 499 VPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGS 578 (1449)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~g~ 578 (1449)
.+.
T Consensus 236 ------------------------------------------------------------~~~----------------- 238 (500)
T TIGR02633 236 ------------------------------------------------------------MMV----------------- 238 (500)
T ss_pred ------------------------------------------------------------HHh-----------------
Confidence 000
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Q 000517 579 LYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQF 658 (1449)
Q Consensus 579 lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~ 658 (1449)
+.
T Consensus 239 -------------------------------------------------------------------~~----------- 240 (500)
T TIGR02633 239 -------------------------------------------------------------------GR----------- 240 (500)
T ss_pred -------------------------------------------------------------------Cc-----------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHHHHHHhhcCCc
Q 000517 659 ILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPR 738 (1449)
Q Consensus 659 l~l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 738 (1449)
..+
T Consensus 241 -------------------------------------------------~~~---------------------------- 243 (500)
T TIGR02633 241 -------------------------------------------------EIT---------------------------- 243 (500)
T ss_pred -------------------------------------------------ccc----------------------------
Confidence 000
Q ss_pred ccccCCCCccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccchhhhhhhcccccCCCC
Q 000517 739 WQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYG 818 (1449)
Q Consensus 739 ~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 818 (1449)
. . .
T Consensus 244 ---------------------------------------------------------~--~----------------~-- 246 (500)
T TIGR02633 244 ---------------------------------------------------------S--L----------------Y-- 246 (500)
T ss_pred ---------------------------------------------------------c--c----------------c--
Confidence 0 0 0
Q ss_pred CCcccCCCCCCCCCcccccCCccccCCCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCC
Q 000517 819 EPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGA 898 (1449)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGa 898 (1449)
+. . . .. .++ ..+.++|+++++.. .+++.+|+|+||+|++||++||+|||||
T Consensus 247 -~~--~--~---~~----~~~-------~~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G~NGs 297 (500)
T TIGR02633 247 -PH--E--P---HE----IGD-------VILEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGVAGLVGA 297 (500)
T ss_pred -cc--c--c---cC----CCC-------ceEEEeCCcccccc----------cccccccccceeEEeCCcEEEEeCCCCC
Confidence 00 0 0 00 000 12556666543210 0123589999999999999999999999
Q ss_pred ChhHHHhhhcCCCCCCeeEEEEEEcCccCcc----ccccceEEEEccCC---CCCCCCCHHHHHHHHHH--hccCCCCCh
Q 000517 899 GKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ----ETFARVSGYCEQTD---IHSPNITVEESVIFSAW--LRLAPEINS 969 (1449)
Q Consensus 899 GKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~d---~~~~~lTv~e~l~f~~~--lr~~~~~~~ 969 (1449)
||||||++|+|..++ +.+|+|.++|.+... ...++.+||++|+. .+++.+||+||+.++.. .........
T Consensus 298 GKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~ 376 (500)
T TIGR02633 298 GRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDA 376 (500)
T ss_pred CHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCH
Confidence 999999999998653 147999999977532 23456789999995 57889999999987532 111001122
Q ss_pred HHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000517 970 KTKAEFVNEVLETIELDA-IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN 1048 (1449)
Q Consensus 970 ~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~ 1048 (1449)
...++.++++++.++|.+ ..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++
T Consensus 377 ~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 451 (500)
T TIGR02633 377 AAELQIIGSAIQRLKVKTASPFLPIG-----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ 451 (500)
T ss_pred HHHHHHHHHHHHhcCccCCCccCccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh
Confidence 334566889999999964 4676654 7999999999999999999999999999999999999999999999988
Q ss_pred cCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1049 TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1049 ~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
+|.|||++|||++ ++.+.+|++++|. +|+++..++..
T Consensus 452 ~g~tviivsHd~~-~~~~~~d~v~~l~-~G~i~~~~~~~ 488 (500)
T TIGR02633 452 EGVAIIVVSSELA-EVLGLSDRVLVIG-EGKLKGDFVNH 488 (500)
T ss_pred CCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEccc
Confidence 8999999999986 5778899999997 58999887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-62 Score=609.77 Aligned_cols=452 Identities=22% Similarity=0.324 Sum_probs=343.8
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC----CCceEEEEcCCCccCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV----PPKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~l 260 (1449)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+
T Consensus 18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM 94 (501)
T ss_pred EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCC
Confidence 5899999999999999999999999999999999999987 999999998875322 145799999999899999
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
||+||+.++......+. ....+ ....++.+++.+||++..++.+++
T Consensus 95 tv~~~l~~~~~~~~~~~-------~~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~--- 140 (501)
T PRK11288 95 TVAENLYLGQLPHKGGI-------VNRRL------------------------LNYEAREQLEHLGVDIDPDTPLKY--- 140 (501)
T ss_pred CHHHHHHhcccccccCC-------CCHHH------------------------HHHHHHHHHHHcCCCCCcCCchhh---
Confidence 99999988532100000 00000 011346689999998777877765
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++ +|+..++.++||+|++|++|
T Consensus 141 --LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiii-tHd~~~~~~~~d~i~~l~~G 216 (501)
T PRK11288 141 --LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYV-SHRMEEIFALCDAITVFKDG 216 (501)
T ss_pred --CCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-eCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999865 46676665 55667888999999999999
Q ss_pred eEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcChhhHhHHHHhcCc
Q 000517 421 KIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLVP 500 (1449)
Q Consensus 421 ~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 500 (1449)
+++..++..+. . +.++..+
T Consensus 217 ~i~~~~~~~~~------------------------~-------------------~~~~~~~------------------ 235 (501)
T PRK11288 217 RYVATFDDMAQ------------------------V-------------------DRDQLVQ------------------ 235 (501)
T ss_pred EEEeecCcccc------------------------C-------------------CHHHHHH------------------
Confidence 99754421000 0 0000000
Q ss_pred ccCCCCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhhhHHHH
Q 000517 501 YDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLY 580 (1449)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~g~lf 580 (1449)
.+.. .
T Consensus 236 ----------------------------------------------------------~~~~-~---------------- 240 (501)
T PRK11288 236 ----------------------------------------------------------AMVG-R---------------- 240 (501)
T ss_pred ----------------------------------------------------------HhcC-C----------------
Confidence 0000 0
Q ss_pred HHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHH
Q 000517 581 FSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQFIL 660 (1449)
Q Consensus 581 f~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~l~ 660 (1449)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK11288 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHHHHHHhhcCCccc
Q 000517 661 LFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPRWQ 740 (1449)
Q Consensus 661 l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~ 740 (1449)
...
T Consensus 241 -----------------------------------------------~~~------------------------------ 243 (501)
T PRK11288 241 -----------------------------------------------EIG------------------------------ 243 (501)
T ss_pred -----------------------------------------------Ccc------------------------------
Confidence 000
Q ss_pred ccCCCCccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccchhhhhhhcccccCCCCCC
Q 000517 741 KMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYGEP 820 (1449)
Q Consensus 741 ~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 820 (1449)
. .. . .
T Consensus 244 -------------------------------------------------------~---------~~-------~----~ 248 (501)
T PRK11288 244 -------------------------------------------------------D---------IY-------G----Y 248 (501)
T ss_pred -------------------------------------------------------c---------cc-------c----c
Confidence 0 00 0 0
Q ss_pred cccCCCCCCCCCcccccCCccccCCCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCCh
Q 000517 821 VKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGK 900 (1449)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGK 900 (1449)
. + .. . .+..+.++|+++ ..+++|+|++|++||++||+|||||||
T Consensus 249 ---~--~---~~----~-------~~~~l~~~~~~~-----------------~~~l~~isl~i~~Ge~~~iiG~NGsGK 292 (501)
T PRK11288 249 ---R--P---RP----L-------GEVRLRLDGLKG-----------------PGLREPISFSVRAGEIVGLFGLVGAGR 292 (501)
T ss_pred ---c--c---cC----C-------CCcEEEEecccc-----------------CCcccceeEEEeCCcEEEEEcCCCCCH
Confidence 0 0 00 0 011355666652 138999999999999999999999999
Q ss_pred hHHHhhhcCCCCCCeeEEEEEEcCccCcc----ccccceEEEEccCC---CCCCCCCHHHHHHHHHHhccCC-C--CChH
Q 000517 901 TTLMDVLAGRKTSGYVEGEIKISGYPKVQ----ETFARVSGYCEQTD---IHSPNITVEESVIFSAWLRLAP-E--INSK 970 (1449)
Q Consensus 901 STLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~d---~~~~~lTv~e~l~f~~~lr~~~-~--~~~~ 970 (1449)
|||+++|+|...+ .+|+|.++|.+... ...++.++|++|++ .+++.+|+.|++.+........ . ....
T Consensus 293 STLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 370 (501)
T PRK11288 293 SELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNR 370 (501)
T ss_pred HHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChH
Confidence 9999999998654 58999999976431 12346789999985 4788999999998753211100 0 0122
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 000517 971 TKAEFVNEVLETIELD-AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT 1049 (1449)
Q Consensus 971 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~ 1049 (1449)
..++.++++++.+++. +..++.++ .|||||||||+||++|+.+|+||||||||+|||+.+...+++.|+++++.
T Consensus 371 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 445 (501)
T PRK11288 371 WEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ 445 (501)
T ss_pred HHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC
Confidence 3345688999999994 66777765 79999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCCCh
Q 000517 1050 GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHS 1090 (1449)
Q Consensus 1050 g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~~~ 1090 (1449)
|.|||++|||+. ++.+.+|++++|. +|++++.|+.++..
T Consensus 446 g~tviivsHd~~-~~~~~~d~i~~l~-~g~i~~~~~~~~~~ 484 (501)
T PRK11288 446 GVAVLFVSSDLP-EVLGVADRIVVMR-EGRIAGELAREQAT 484 (501)
T ss_pred CCEEEEECCCHH-HHHhhCCEEEEEE-CCEEEEEEccccCC
Confidence 999999999986 5778899999998 58999999886543
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-60 Score=648.85 Aligned_cols=210 Identities=22% Similarity=0.265 Sum_probs=178.3
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.|+|++++++. +...+|+||||+|+|||++||+|+||||||||+++|.|...+ .+|+|.+||.++
T Consensus 1308 ~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~di 1374 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGREI 1374 (1560)
T ss_pred eEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEc
Confidence 5889999987742 123599999999999999999999999999999999998765 589999999986
Q ss_pred cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000517 928 VQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI-------KDSLVGIPG 997 (1449)
Q Consensus 928 ~~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 997 (1449)
.. ..+|+.+|||||++.+|. -|++|||... .+ ..++.++++++..+|.+. .|+.+|..|
T Consensus 1375 ~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~------~~----~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G 1443 (1560)
T PTZ00243 1375 GAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPF------LE----ASSAEVWAALELVGLRERVASESEGIDSRVLEGG 1443 (1560)
T ss_pred ccCCHHHHHhcceEECCCCcccc-ccHHHHhCcc------cC----CCHHHHHHHHHHCCChHHHhhCcccccccccCCc
Confidence 43 567889999999999886 4999999531 11 224568888888887653 577787655
Q ss_pred CCCCCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEec
Q 000517 998 VNGLSTEQRKRLTIAVELVAN-PSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~-p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~ 1076 (1449)
. .||||||||++|||||+++ |+||+||||||+||+.+.+.|++.|++.. +++|||+++|+++ ....+|+|++|+
T Consensus 1444 ~-nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd- 1518 (1560)
T PTZ00243 1444 S-NYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD- 1518 (1560)
T ss_pred C-cCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE-
Confidence 4 6999999999999999996 89999999999999999999999999864 5899999999974 567899999998
Q ss_pred CcEEEEecCC
Q 000517 1077 GGRIIYCGPL 1086 (1449)
Q Consensus 1077 gG~~v~~G~~ 1086 (1449)
+|++++.|+.
T Consensus 1519 ~G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 HGAVAEMGSP 1528 (1560)
T ss_pred CCEEEEECCH
Confidence 5999999986
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-60 Score=647.57 Aligned_cols=209 Identities=21% Similarity=0.302 Sum_probs=178.0
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.|+|++++++. +...+|+|||++|+|||++||+|+||||||||+++|+|... .+|+|.|||.++
T Consensus 1217 ~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di 1282 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSW 1282 (1490)
T ss_pred eEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEc
Confidence 5889999987742 12469999999999999999999999999999999999764 479999999986
Q ss_pred cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000517 928 VQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-------IKDSLVGIPG 997 (1449)
Q Consensus 928 ~~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 997 (1449)
.. ..+|+.++||||++.+|+. |++|||... .+..++.++++++.++|.+ -.|+.+|..|
T Consensus 1283 ~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~----------~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G 1351 (1490)
T TIGR01271 1283 NSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPY----------EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351 (1490)
T ss_pred ccCCHHHHHhceEEEeCCCccCcc-CHHHHhCcc----------cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCC
Confidence 53 4578899999999999874 999999431 1123456888999988854 3577777654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
.+||||||||++|||||+++|+||+||||||+||..+...|++.|++.. +++|||+++|+++ ....+|+|++|+ +
T Consensus 1352 -~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~-~ 1426 (1490)
T TIGR01271 1352 -YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIE-G 1426 (1490)
T ss_pred -CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE-C
Confidence 4699999999999999999999999999999999999999999999874 5899999999975 567799999998 5
Q ss_pred cEEEEecCC
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~v~~G~~ 1086 (1449)
|++++.|++
T Consensus 1427 G~ivE~g~p 1435 (1490)
T TIGR01271 1427 SSVKQYDSI 1435 (1490)
T ss_pred CEEEEeCCH
Confidence 899999986
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-61 Score=598.36 Aligned_cols=451 Identities=17% Similarity=0.272 Sum_probs=342.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCccCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIAE 259 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1449)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 35999999999999999999999999999999999999987 9999999988754321 3569999999888999
Q ss_pred CCHHHHHHHHHH-ccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 260 MTVRETVDFSAR-CQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 260 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
+||+||+.++.. ..+.... ..+ ....++.+++.+||++..++.+++
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~--------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~- 134 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVD--------QDK------------------------MYRDTKAIFDELDIDIDPRAKVAT- 134 (491)
T ss_pred CCHHHHhhcccccccccccC--------HHH------------------------HHHHHHHHHHHcCCCCCccCchhh-
Confidence 999999987531 1110000 000 011346688999998888888776
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++ +|+.+++.++||+|++|+
T Consensus 135 ----LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~-tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 135 ----LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYI-SHKMEEIFQLCDEITILR 208 (491)
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-ecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999875 46676665 566778889999999999
Q ss_pred CCeEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcChhhHhHHHHhc
Q 000517 419 EGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELL 498 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 498 (1449)
+|+++..|+.+++.. .+..+ .
T Consensus 209 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~-------------~-- 229 (491)
T PRK10982 209 DGQWIATQPLAGLTM--------------------------------------------DKIIA-------------M-- 229 (491)
T ss_pred CCEEEeecChhhCCH--------------------------------------------HHHHH-------------H--
Confidence 999998776432100 00000 0
Q ss_pred CcccCCCCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhhhHH
Q 000517 499 VPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGS 578 (1449)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~g~ 578 (1449)
+. +
T Consensus 230 -------------------------------------------------------------~~--~-------------- 232 (491)
T PRK10982 230 -------------------------------------------------------------MV--G-------------- 232 (491)
T ss_pred -------------------------------------------------------------Hh--C--------------
Confidence 00 0
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Q 000517 579 LYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQF 658 (1449)
Q Consensus 579 lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~ 658 (1449)
-
T Consensus 233 --------------------------------------------------------------------~----------- 233 (491)
T PRK10982 233 --------------------------------------------------------------------R----------- 233 (491)
T ss_pred --------------------------------------------------------------------C-----------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHHHHHHhhcCCc
Q 000517 659 ILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPR 738 (1449)
Q Consensus 659 l~l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 738 (1449)
.+
T Consensus 234 -------------------------------------------------~~----------------------------- 235 (491)
T PRK10982 234 -------------------------------------------------SL----------------------------- 235 (491)
T ss_pred -------------------------------------------------Cc-----------------------------
Confidence 00
Q ss_pred ccccCCCCccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccchhhhhhhcccccCCCC
Q 000517 739 WQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYG 818 (1449)
Q Consensus 739 ~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 818 (1449)
.. ...
T Consensus 236 ----------------------------------------------------------~~----------------~~~- 240 (491)
T PRK10982 236 ----------------------------------------------------------TQ----------------RFP- 240 (491)
T ss_pred ----------------------------------------------------------cc----------------ccc-
Confidence 00 000
Q ss_pred CCcccCCCCCCCCCcccccCCccccCCCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCC
Q 000517 819 EPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGA 898 (1449)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGa 898 (1449)
. . . .. . .+..+.++|+++. ...+|+|||+++++||++||+|||||
T Consensus 241 -~---~--~---~~----~-------~~~~i~~~~l~~~---------------~~~~l~~vsl~i~~Ge~~~l~G~nGs 285 (491)
T PRK10982 241 -D---K--E---NK----P-------GEVILEVRNLTSL---------------RQPSIRDVSFDLHKGEILGIAGLVGA 285 (491)
T ss_pred -c---c--c---CC----C-------CCcEEEEeCcccc---------------cCcccceeeEEEeCCcEEEEecCCCC
Confidence 0 0 0 00 0 0113667777653 12489999999999999999999999
Q ss_pred ChhHHHhhhcCCCCCCeeEEEEEEcCccCcc----ccccceEEEEccCC---CCCCCCCHHHHHHHHHH--hccCCC-CC
Q 000517 899 GKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ----ETFARVSGYCEQTD---IHSPNITVEESVIFSAW--LRLAPE-IN 968 (1449)
Q Consensus 899 GKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~d---~~~~~lTv~e~l~f~~~--lr~~~~-~~ 968 (1449)
|||||+++|+|...+ .+|+|.++|.++.. ...++.+||++|+. .+++.+|+.+|..+... ...... ..
T Consensus 286 GKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (491)
T PRK10982 286 KRTDIVETLFGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLD 363 (491)
T ss_pred CHHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccC
Confidence 999999999998765 58999999976532 12345689999985 35788888877433210 100001 12
Q ss_pred hHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 000517 969 SKTKAEFVNEVLETIELD-AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047 (1449)
Q Consensus 969 ~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~ 1047 (1449)
....++.++++++.+++. +..++.++ .|||||||||+||++|+.+|+||||||||+|||+.++..+++.|+++.
T Consensus 364 ~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~ 438 (491)
T PRK10982 364 NSRMKSDTQWVIDSMRVKTPGHRTQIG-----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELA 438 (491)
T ss_pred cHHHHHHHHHHHHhcCccCCCcccccc-----cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHH
Confidence 233345678899999995 45566654 799999999999999999999999999999999999999999999998
Q ss_pred hcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCC
Q 000517 1048 NTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGK 1088 (1449)
Q Consensus 1048 ~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~ 1088 (1449)
+.|+|||++||+++ ++.+.+|++++|. +|+++..++.+.
T Consensus 439 ~~~~tvi~vsHd~~-~~~~~~d~v~~l~-~g~i~~~~~~~~ 477 (491)
T PRK10982 439 KKDKGIIIISSEMP-ELLGITDRILVMS-NGLVAGIVDTKT 477 (491)
T ss_pred HCCCEEEEECCChH-HHHhhCCEEEEEE-CCEEEEEEcccc
Confidence 88999999999986 5778999999997 589998776643
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-60 Score=588.89 Aligned_cols=447 Identities=19% Similarity=0.283 Sum_probs=328.2
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC---CCceEEEEcCCCcc--C--
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV---PPKTSAYISQNDLH--I-- 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~--~-- 257 (1449)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.. +
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 4899999999999999999999999999999999999987 999999997654322 12458999997542 1
Q ss_pred ----CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccc
Q 000517 258 ----AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADT 333 (1449)
Q Consensus 258 ----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 333 (1449)
..+||+|++.+... .+.+++.+++.+||++..|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~l~~~~l~~~~~~ 131 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEVK------------------------------------------DPARCEQLAQQFGITALLDR 131 (490)
T ss_pred chhhccccHHHhcccchh------------------------------------------HHHHHHHHHHHcCCHhhhhC
Confidence 14677777643100 01124567899999888888
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.+++ |||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++ +|+..++.+.||+
T Consensus 132 ~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~-tH~~~~~~~~~d~ 204 (490)
T PRK10938 132 RFKY-----LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLV-LNRFDEIPDFVQF 204 (490)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEE-eCCHHHHHhhCCE
Confidence 8876 999999999999999999999999999999999999999999999876 46676665 4567788899999
Q ss_pred EEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcChhhHhH
Q 000517 414 IILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKL 493 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 493 (1449)
|++|++|+++.+|+++++.+. +.+.
T Consensus 205 v~~l~~G~i~~~~~~~~~~~~---------------~~~~---------------------------------------- 229 (490)
T PRK10938 205 AGVLADCTLAETGEREEILQQ---------------ALVA---------------------------------------- 229 (490)
T ss_pred EEEEECCEEEEeCCHHHHhcc---------------hhhh----------------------------------------
Confidence 999999999998876543210 0000
Q ss_pred HHHhcCcccCCCCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccccchh
Q 000517 494 DEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGN 573 (1449)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~ 573 (1449)
... .+ + .+.
T Consensus 230 --~~~------------------------------~~------~--------------------------~~~------- 238 (490)
T PRK10938 230 --QLA------------------------------HS------E--------------------------QLE------- 238 (490)
T ss_pred --hhh------------------------------hh------h--------------------------ccC-------
Confidence 000 00 0 000
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccHHH
Q 000517 574 YYMGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWR 653 (1449)
Q Consensus 574 ~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~~~ 653 (1449)
T Consensus 239 -------------------------------------------------------------------------------- 238 (490)
T PRK10938 239 -------------------------------------------------------------------------------- 238 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHHHHHHh
Q 000517 654 FFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNE 733 (1449)
Q Consensus 654 f~~~~l~l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ne 733 (1449)
+ . ..|
T Consensus 239 -----------------------------------------------~--~---~~~----------------------- 243 (490)
T PRK10938 239 -----------------------------------------------G--V---QLP----------------------- 243 (490)
T ss_pred -----------------------------------------------c--c---ccC-----------------------
Confidence 0 0 000
Q ss_pred hcCCcccccCCCCccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccchhhhhhhcccc
Q 000517 734 FLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESE 813 (1449)
Q Consensus 734 f~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~~~~~~~~~~s~~~~~~~~~~~ 813 (1449)
..
T Consensus 244 -------------------------------------------------------------~~----------------- 245 (490)
T PRK10938 244 -------------------------------------------------------------EP----------------- 245 (490)
T ss_pred -------------------------------------------------------------cc-----------------
Confidence 00
Q ss_pred cCCCCCCcccCCCCCCCCCcccccCCccccCCCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEe
Q 000517 814 DSSYGEPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALM 893 (1449)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~ 893 (1449)
.... . . . ... . ....++++|+++.++ ++.+|+|+||++++||+++|+
T Consensus 246 -~~~~-~---~--~---~~~---~-------~~~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~ 292 (490)
T PRK10938 246 -DEPS-A---R--H---ALP---A-------NEPRIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIV 292 (490)
T ss_pred -cccc-c---c--c---ccC---C-------CCceEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEE
Confidence 0000 0 0 0 000 0 011366777766542 245999999999999999999
Q ss_pred cCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc----ccccceEEEEccCCCCCC--CCCHHHHHHHHHHh--ccCC
Q 000517 894 GVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ----ETFARVSGYCEQTDIHSP--NITVEESVIFSAWL--RLAP 965 (1449)
Q Consensus 894 G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~d~~~~--~lTv~e~l~f~~~l--r~~~ 965 (1449)
||||||||||+++|+|...+ ..+|+|.++|.+... ...++.+||++|++.+++ ..|+++++.+...- ....
T Consensus 293 G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (490)
T PRK10938 293 GPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQ 371 (490)
T ss_pred CCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhcccccccccc
Confidence 99999999999999996432 147999999976421 123567999999875543 35677766543210 1111
Q ss_pred CCChHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 000517 966 EINSKTKAEFVNEVLETIELDA-IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044 (1449)
Q Consensus 966 ~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1044 (1449)
.. ....++.++++++.++|.+ ..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+
T Consensus 372 ~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~ 445 (490)
T PRK10938 372 AV-SDRQQKLAQQWLDILGIDKRTADAPFH-----SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVD 445 (490)
T ss_pred CC-CHHHHHHHHHHHHHcCCchhhccCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 11 1233456889999999987 7777654 799999999999999999999999999999999999999999999
Q ss_pred HHHhcC-CEEEEEecCccHHHHH-hcCeEEEEecCcEEEEec
Q 000517 1045 NIVNTG-RTIVCTIHQPSIDIFE-AFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1045 ~l~~~g-~tvi~~~H~p~~~~~~-~~d~~~~l~~gG~~v~~G 1084 (1449)
+++++| .|||++||+++ ++.+ .+|++++|. +|++++.-
T Consensus 446 ~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~-~G~i~~~~ 485 (490)
T PRK10938 446 VLISEGETQLLFVSHHAE-DAPACITHRLEFVP-DGDIYRYV 485 (490)
T ss_pred HHHhcCCcEEEEEecchh-hhhhhhheeEEEec-CCceEEee
Confidence 998766 47999999976 4555 478999997 57877654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-57 Score=506.05 Aligned_cols=469 Identities=24% Similarity=0.351 Sum_probs=356.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCeeeEEEECCccCCCCCC-------CceEEEEcCC
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS--LKVTGEVSYNGYKLEEFVP-------PKTSAYISQN 253 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 253 (1449)
...++++|||.+++||.++|+|.||||||-..+.+.|+++.. ...+|+|.|+|.++-.... ...+++++|+
T Consensus 22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQE 101 (534)
T COG4172 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQE 101 (534)
T ss_pred ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecc
Confidence 356899999999999999999999999999999999998763 4568999999998744332 2479999999
Q ss_pred Cc--cCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccc
Q 000517 254 DL--HIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCA 331 (1449)
Q Consensus 254 d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 331 (1449)
+. +-|-.|+..-+.-..++.... ++++ .+.++-++|+..|+++-.
T Consensus 102 PMtSLNPl~tIg~Qi~E~l~~Hrg~---------~~~~------------------------Ar~r~lelL~~VgI~~p~ 148 (534)
T COG4172 102 PMTSLNPLHTIGKQLAEVLRLHRGL---------SRAA------------------------ARARALELLELVGIPEPE 148 (534)
T ss_pred cccccCcHhHHHHHHHHHHHHHhcc---------cHHH------------------------HHHHHHHHHHHcCCCchh
Confidence 74 667778877776665553211 1111 112345678888998654
Q ss_pred cccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhc
Q 000517 332 DTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLF 411 (1449)
Q Consensus 332 dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~f 411 (1449)
..+ +.+...|||||||||.||.||+.+|++|+-||||++||.....+|.+.|+++..+.| ..++.|+|+..-+-+++
T Consensus 149 ~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~g-Ma~lfITHDL~iVr~~A 225 (534)
T COG4172 149 KRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELG-MAILFITHDLGIVRKFA 225 (534)
T ss_pred hhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhC-cEEEEEeccHHHHHHhh
Confidence 333 334556999999999999999999999999999999999999999999999987654 55666789999999999
Q ss_pred CeEEEEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcChhhH
Q 000517 412 DDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVK 491 (1449)
Q Consensus 412 D~v~lL~~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 491 (1449)
|+|++|.+|+++++|+++.+.. .|.+ ||. +
T Consensus 226 DrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pYT-----------------r 255 (534)
T COG4172 226 DRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PYT-----------------R 255 (534)
T ss_pred hhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hHH-----------------H
Confidence 9999999999999998776621 1110 100 0
Q ss_pred hHHHHhcCcccCCCCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccccc
Q 000517 492 KLDEELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFH 571 (1449)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~ 571 (1449)
.+.+ .
T Consensus 256 ~Ll~---a------------------------------------------------------------------------ 260 (534)
T COG4172 256 KLLA---A------------------------------------------------------------------------ 260 (534)
T ss_pred HHHh---c------------------------------------------------------------------------
Confidence 0000 0
Q ss_pred hhhhhHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccH
Q 000517 572 GNYYMGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEV 651 (1449)
Q Consensus 572 ~~~~~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~ 651 (1449)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHHHHH
Q 000517 652 WRFFRQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSV 731 (1449)
Q Consensus 652 ~~f~~~~l~l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 731 (1449)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCCcccccCCCCccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccchhhhhhhcc
Q 000517 732 NEFLAPRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQE 811 (1449)
Q Consensus 732 nef~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~~~~~~~~~~s~~~~~~~~~ 811 (1449)
| | .|
T Consensus 261 -e----------P----~g------------------------------------------------------------- 264 (534)
T COG4172 261 -E----------P----SG------------------------------------------------------------- 264 (534)
T ss_pred -C----------C----CC-------------------------------------------------------------
Confidence 0 0 00
Q ss_pred cccCCCCCCcccCCCCCCCCCcccccCCccccCCCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEE
Q 000517 812 SEDSSYGEPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTA 891 (1449)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~a 891 (1449)
. +. + ..... +.-+..+|++...+.+..+-.. ......++++||+++++||.+|
T Consensus 265 ----~---~~-----p------~~~~~-------~~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gqTlG 317 (534)
T COG4172 265 ----D---PP-----P------LPEDA-------PVLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQTLG 317 (534)
T ss_pred ----C---CC-----C------CCCCC-------CceEEecceEEEEecCCccccc--cchheEEeccceeEecCCCeEE
Confidence 0 00 0 00000 1122233333222222111000 1123568999999999999999
Q ss_pred EecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc------ccccceEEEEccCCC--CCCCCCHHHHHHHHHHhcc
Q 000517 892 LMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ------ETFARVSGYCEQTDI--HSPNITVEESVIFSAWLRL 963 (1449)
Q Consensus 892 l~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~~~~~~gyv~Q~d~--~~~~lTv~e~l~f~~~lr~ 963 (1449)
|+|.||||||||=.+|.+...+ +|+|.++|.++.. ..+|+.+-.|+||+. +.|.+||.+-+.-+.....
T Consensus 318 lVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~ 394 (534)
T COG4172 318 LVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE 394 (534)
T ss_pred EEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcC
Confidence 9999999999999999987654 5999999998643 235678899999984 7799999999988766654
Q ss_pred CCCCChHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000517 964 APEINSKTKAEFVNEVLETIELDAI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA 1042 (1449)
Q Consensus 964 ~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~ 1042 (1449)
+ ..+..++++++.++|+.+||++- +++. +.++|||||||++|||||+.+|++++||||||.||-.-+.+|.++
T Consensus 395 ~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~L 468 (534)
T COG4172 395 P-KLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDL 468 (534)
T ss_pred C-CCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHH
Confidence 3 46778899999999999999863 3333 458999999999999999999999999999999999999999999
Q ss_pred HHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1043 VKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1043 l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|+++.+ .|.+-++++||.. -+-.++|++++|. +|+||+.||.
T Consensus 469 Lr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~-~GkiVE~G~~ 511 (534)
T COG4172 469 LRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMR-DGKIVEQGPT 511 (534)
T ss_pred HHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEe-CCEEeeeCCH
Confidence 999964 5999999999986 4778899999997 5999999996
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-57 Score=571.91 Aligned_cols=201 Identities=23% Similarity=0.325 Sum_probs=162.8
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|+++.+ +++.+|+|||++|++||+++|+||||||||||+++|+|...+ .+|+|.+++.
T Consensus 324 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSF-------------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEE-------------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 46777777654 234699999999999999999999999999999999998654 5899998542
Q ss_pred ccccccceEEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000517 928 VQETFARVSGYCEQTD-IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-IKDSLVGIPGVNGLSTEQ 1005 (1449)
Q Consensus 928 ~~~~~~~~~gyv~Q~d-~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 1005 (1449)
..+||++|+. .+++.+||.|++.+....+. .... ...++++++.+++.+ ..+..++ .|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKVG-----VLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCchh-----hCCHHH
Confidence 1489999986 67788999999987643221 1111 123457899999964 4566654 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEE-Eec
Q 000517 1006 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRII-YCG 1084 (1449)
Q Consensus 1006 rqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v-~~G 1084 (1449)
||||+||++|+.+|++|+|||||+|||+.++..+++.|+++ .| |||++||++. .+...+|++++|.++|++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF--PG-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CC-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 99999999999999999999999999999999999999987 24 8999999986 5778899999998667776 455
Q ss_pred C
Q 000517 1085 P 1085 (1449)
Q Consensus 1085 ~ 1085 (1449)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-57 Score=570.04 Aligned_cols=198 Identities=21% Similarity=0.289 Sum_probs=163.8
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|++++++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 477788776542 24599999999999999999999999999999999998654 4799999873
Q ss_pred ccccccceEEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHH
Q 000517 928 VQETFARVSGYCEQTDI--HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-AIKDSLVGIPGVNGLSTE 1004 (1449)
Q Consensus 928 ~~~~~~~~~gyv~Q~d~--~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgG 1004 (1449)
+.+||++|+.. +.+.+|++|++.+. ... ...++.++++++.+++. +..+..++ .||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~---~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQW---RQE-----GDDEQAVRGTLGRLLFSQDDIKKSVK-----VLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHh---ccC-----CccHHHHHHHHHHcCCChhHhcCccc-----ccCHH
Confidence 35899999864 45679999998642 111 11235578899999994 56676654 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEE-Ee
Q 000517 1005 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRII-YC 1083 (1449)
Q Consensus 1005 qrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v-~~ 1083 (1449)
||||++||++|+.+|++|+|||||+|||+.+...+++.|+++ +.|||++||++. .+...+|++++|.+ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999886 459999999986 57778999999984 7887 77
Q ss_pred cCC
Q 000517 1084 GPL 1086 (1449)
Q Consensus 1084 G~~ 1086 (1449)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-57 Score=567.45 Aligned_cols=201 Identities=21% Similarity=0.304 Sum_probs=162.3
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.+++.
T Consensus 322 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGF-------------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEE-------------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECCc--
Confidence 46777777643 234699999999999999999999999999999999998654 4899998542
Q ss_pred ccccccceEEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000517 928 VQETFARVSGYCEQTD-IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-IKDSLVGIPGVNGLSTEQ 1005 (1449)
Q Consensus 928 ~~~~~~~~~gyv~Q~d-~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 1005 (1449)
..+||++|+. .+++.+||.|++.+...... .... +..+.++++.++|.+ ..+..++ .|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKVG-----QLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCchh-----hCCHHH
Confidence 1489999986 47788999999987642211 1111 223567899999964 4566654 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEE-Eec
Q 000517 1006 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRII-YCG 1084 (1449)
Q Consensus 1006 rqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v-~~G 1084 (1449)
||||+||++|+.+|++|+|||||+|||+.+...+++.|+++ +.|||++||++. .+...+|++++|.++|+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF---AGCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC---CCeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 99999999999999999999999999999999999999987 248999999986 4677899999998667776 445
Q ss_pred C
Q 000517 1085 P 1085 (1449)
Q Consensus 1085 ~ 1085 (1449)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-54 Score=550.76 Aligned_cols=197 Identities=23% Similarity=0.355 Sum_probs=160.2
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|+++.+ +++.+|+|+|+.|++|+++||+|||||||||||++|+|...+ .+|+|.+++.
T Consensus 312 ~l~~~~l~~~y-------------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGY-------------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEe-------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC--
Confidence 46777777654 234699999999999999999999999999999999998654 5899999742
Q ss_pred ccccccceEEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHH
Q 000517 928 VQETFARVSGYCEQTD--IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-IKDSLVGIPGVNGLSTE 1004 (1449)
Q Consensus 928 ~~~~~~~~~gyv~Q~d--~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgG 1004 (1449)
..+||++|+. .+.+..|+.+++.- . .. ....+.+.++++.+++.. ..++.++ .||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEETR-----RFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCchh-----hCCHH
Confidence 2589999974 34456677776531 1 11 122456788999999963 5666654 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEE-Ee
Q 000517 1005 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRII-YC 1083 (1449)
Q Consensus 1005 qrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v-~~ 1083 (1449)
|||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||++|||+. .+...+|++++|. +|+++ +.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~-~G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVH-DGKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEcC
Confidence 999999999999999999999999999999999999999987 349999999986 4777899999998 58887 78
Q ss_pred cCC
Q 000517 1084 GPL 1086 (1449)
Q Consensus 1084 G~~ 1086 (1449)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 875
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-55 Score=549.67 Aligned_cols=197 Identities=23% Similarity=0.280 Sum_probs=164.7
Q ss_pred eeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCCCCCCHHHHH
Q 000517 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESV 955 (1449)
Q Consensus 876 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~e~l 955 (1449)
.|+++|++|++||+++|+||||||||||+++|+|...+ .+|+|.++ ..++|++|+..+.+.+||+|++
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE----------LKISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----------eeEEEecccccCCCCCcHHHHH
Confidence 48999999999999999999999999999999998765 48999886 1489999998888899999999
Q ss_pred HHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 000517 956 IFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARA 1035 (1449)
Q Consensus 956 ~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~ 1035 (1449)
.+.... .. ....++++++.++|.+..++.++ .|||||||||+||++|+.+|+||+|||||+|||+.+
T Consensus 422 ~~~~~~-----~~---~~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~ 488 (590)
T PRK13409 422 RSITDD-----LG---SSYYKSEIIKPLQLERLLDKNVK-----DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488 (590)
T ss_pred HHHhhh-----cC---hHHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 874211 11 12346889999999988887764 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCCC---hhHHHHHHhcC
Q 000517 1036 AAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKH---SSQVIEYFEGI 1100 (1449)
Q Consensus 1036 ~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~~---~~~~~~~f~~~ 1100 (1449)
+..+.+.|++++++ |+|||+++||+. .+...+|++++|. |++...|..... ...+-.|++.+
T Consensus 489 ~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 489 RLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHASGPMDMREGMNRFLKEL 554 (590)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--CcceeeeecCCchhHHHHHHHHHHHc
Confidence 99999999999764 899999999986 4677899999995 478777775432 12344566665
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-54 Score=550.52 Aligned_cols=202 Identities=22% Similarity=0.347 Sum_probs=161.8
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|+++.+ +++.+|+|+|++|++|+++||+|||||||||||++|+|...+ .+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQI-------------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEE-------------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCCc
Confidence 36677777654 234699999999999999999999999999999999998654 5899998 4321
Q ss_pred ccccccceEEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHH
Q 000517 928 VQETFARVSGYCEQTD-IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-AIKDSLVGIPGVNGLSTEQ 1005 (1449)
Q Consensus 928 ~~~~~~~~~gyv~Q~d-~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGq 1005 (1449)
.+||++|+. .+++.+||.|++.+.... . ... .....+.++++.+++. +..++.++ .|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~--~~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQE-V--MVN--GRPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhccc-c--ccc--chHHHHHHHHHhcCCCHHHHhChhh-----hCCHHH
Confidence 489999975 578899999999874321 0 111 1234577889999985 45666654 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEE-Eec
Q 000517 1006 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRII-YCG 1084 (1449)
Q Consensus 1006 rqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v-~~G 1084 (1449)
||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||+. .+...+|+++++..+|++. |.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 459999999976 4677899999997346665 445
Q ss_pred CC
Q 000517 1085 PL 1086 (1449)
Q Consensus 1085 ~~ 1086 (1449)
+.
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 43
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=505.30 Aligned_cols=452 Identities=22% Similarity=0.389 Sum_probs=349.5
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCccC
Q 000517 182 AKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHI 257 (1449)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 257 (1449)
...++|+|||+.+++||+++|+|.||||||||+|+|+|.++|+ +|+|.+||++.....+ ..-++.|.|+..++
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~ 95 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhcc
Confidence 3467999999999999999999999999999999999999998 9999999998765444 24689999999999
Q ss_pred CCCCHHHHHHHHHHccCC-CCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccc
Q 000517 258 AEMTVRETVDFSARCQGV-GSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVG 336 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 336 (1449)
|+|||.||+.++...... +- +.+++ .......+|+.+|+....++.|+
T Consensus 96 p~LsVaeNifLgre~~~~~g~-------id~~~------------------------m~~~A~~~l~~lg~~~~~~~~v~ 144 (500)
T COG1129 96 PNLSVAENIFLGREPTRRFGL-------IDRKA------------------------MRRRARELLARLGLDIDPDTLVG 144 (500)
T ss_pred CCccHHHHhhcccccccCCCc-------cCHHH------------------------HHHHHHHHHHHcCCCCChhhhhh
Confidence 999999999886543321 10 00000 11235668999999766899999
Q ss_pred ccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEE
Q 000517 337 NAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416 (1449)
Q Consensus 337 ~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~l 416 (1449)
+ ||+||||-|.||+|+..++++++|||||++|+...+..+++.++++.. .| ..++.++|..+|++++||+|.+
T Consensus 145 ~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~G-v~ii~ISHrl~Ei~~i~DritV 217 (500)
T COG1129 145 D-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QG-VAIIYISHRLDEVFEIADRITV 217 (500)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CC-CEEEEEcCcHHHHHHhcCEEEE
Confidence 8 999999999999999999999999999999999999999999999975 34 4455567899999999999999
Q ss_pred EeCCeEEEecCh-hhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcChhhHhHHH
Q 000517 417 MAEGKIVYHGPQ-DHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDE 495 (1449)
Q Consensus 417 L~~G~iv~~G~~-~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 495 (1449)
|.||+.+..++. ++.. .++.
T Consensus 218 lRDG~~v~~~~~~~~~~--------------------------------------------~~~l--------------- 238 (500)
T COG1129 218 LRDGRVVGTRPTAAETS--------------------------------------------EDEL--------------- 238 (500)
T ss_pred EeCCEEeeecccccCCC--------------------------------------------HHHH---------------
Confidence 999999876652 2110 0000
Q ss_pred HhcCcccCCCCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhh
Q 000517 496 ELLVPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYY 575 (1449)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~ 575 (1449)
.
T Consensus 239 ----------------------------v--------------------------------------------------- 239 (500)
T COG1129 239 ----------------------------V--------------------------------------------------- 239 (500)
T ss_pred ----------------------------H---------------------------------------------------
Confidence 0
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccHHHHH
Q 000517 576 MGSLYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFF 655 (1449)
Q Consensus 576 ~g~lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~~~f~ 655 (1449)
-.|+|-.
T Consensus 240 ------------------------------------------------------------------~~MvGr~------- 246 (500)
T COG1129 240 ------------------------------------------------------------------RLMVGRE------- 246 (500)
T ss_pred ------------------------------------------------------------------HHhhCcc-------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHHHHHHhhc
Q 000517 656 RQFILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFL 735 (1449)
Q Consensus 656 ~~~l~l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~ 735 (1449)
.
T Consensus 247 ------------------------------------------------------------------------------~- 247 (500)
T COG1129 247 ------------------------------------------------------------------------------L- 247 (500)
T ss_pred ------------------------------------------------------------------------------h-
Confidence 0
Q ss_pred CCcccccCCCCccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccchhhhhhhcccccC
Q 000517 736 APRWQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDS 815 (1449)
Q Consensus 736 ~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~~~~~~~~~~s~~~~~~~~~~~~~ 815 (1449)
..
T Consensus 248 ----~~-------------------------------------------------------------------------- 249 (500)
T COG1129 248 ----ED-------------------------------------------------------------------------- 249 (500)
T ss_pred ----hh--------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCcccCCCCCCCCCcccccCCccccCCCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecC
Q 000517 816 SYGEPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGV 895 (1449)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~ 895 (1449)
..... . . . ...+..+++++++. ...++||||++++||++||-|-
T Consensus 250 ~~~~~---~--~---~-----------~~~~~~l~v~~l~~-----------------~~~~~dvSf~vr~GEIlGiaGL 293 (500)
T COG1129 250 LFPEP---P--E---E-----------GIGEPVLEVRNLSG-----------------GGKVRDVSFTVRAGEILGIAGL 293 (500)
T ss_pred hcccc---c--c---c-----------CCCCcEEEEecCCC-----------------CCceeCceeEEeCCcEEEEecc
Confidence 00000 0 0 0 00011344555432 1147899999999999999999
Q ss_pred CCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc----ccccceEEEEccC---CCCCCCCCHHHHHHHHHHhccCC--C
Q 000517 896 SGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ----ETFARVSGYCEQT---DIHSPNITVEESVIFSAWLRLAP--E 966 (1449)
Q Consensus 896 sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~---d~~~~~lTv~e~l~f~~~lr~~~--~ 966 (1449)
=|||+|-|+++|.|.... .+|+|.+||.+... +..+..++||+.| +-+++.++|.+|+.++...+... -
T Consensus 294 vGaGRTEl~~~lfG~~~~--~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~ 371 (500)
T COG1129 294 VGAGRTELARALFGARPA--SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGL 371 (500)
T ss_pred ccCCHHHHHHHHhCCCcC--CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccc
Confidence 999999999999995443 48999999987532 3456679999976 45788999999998873322221 2
Q ss_pred CChHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000517 967 INSKTKAEFVNEVLETIELDAI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045 (1449)
Q Consensus 967 ~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~ 1045 (1449)
++....++.+++..+.+++... .+..+ ..||||++|||.|||.|..+|+||+|||||.|.|..+..+|.++|++
T Consensus 372 i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~ 446 (500)
T COG1129 372 IDRRKERALAERYIRRLRIKTPSPEQPI-----GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRE 446 (500)
T ss_pred cChHHHHHHHHHHHHhcCcccCCccchh-----hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHH
Confidence 4556666788999999998642 23343 47999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1046 IVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1046 l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
++++|++||++|-+.. |+...||||++|. +|+++-.=+.+
T Consensus 447 lA~~G~ail~iSSElp-Ell~~~DRIlVm~-~Gri~~e~~~~ 486 (500)
T COG1129 447 LAAEGKAILMISSELP-ELLGLSDRILVMR-EGRIVGELDRE 486 (500)
T ss_pred HHHCCCEEEEEeCChH-HHHhhCCEEEEEE-CCEEEEEeccc
Confidence 9999999999999975 8999999999998 58998755544
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-52 Score=504.52 Aligned_cols=220 Identities=27% Similarity=0.336 Sum_probs=170.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCCccCCCCCH
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTV 262 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (1449)
.+++|+|+|+.+.+|+.++|+|+|||||||||++|+|...|+ +|+|...+ ..+++|++|+....+..||
T Consensus 15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~tv 83 (530)
T COG0488 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKTV 83 (530)
T ss_pred CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCccH
Confidence 356999999999999999999999999999999999999998 99998764 2379999999999999999
Q ss_pred HHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChH---HHHHH-HhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 263 RETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDID---TYMKA-ISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d---~~~~~-~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
.+.+.-+..- ..+...+..... ...++++.. .+... ....++..+.+++.+|..||++.. ++.+++
T Consensus 84 ~~~v~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~- 153 (530)
T COG0488 84 LDYVIEGFGE-----LRELLAELEEAY---ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSS- 153 (530)
T ss_pred HHHHHhhhHH-----HHHHHHHHHHHH---HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhh-
Confidence 9999765431 111111111111 111122111 11111 123346666788899999999887 888887
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
||||||.||+||++|+.+|++|+|||||++||..+..++-+.|++. .+ | ++.++|++..+-+.|++|+-++
T Consensus 154 ----LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-t-viiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 154 ----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-T-VIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred ----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-c-EEEEeCCHHHHHHHhhheEEec
Confidence 9999999999999999999999999999999999999988888763 33 4 4446789999999999999999
Q ss_pred CCeE-EEecChhhHH
Q 000517 419 EGKI-VYHGPQDHVL 432 (1449)
Q Consensus 419 ~G~i-v~~G~~~~~~ 432 (1449)
.|++ .|.|..+...
T Consensus 225 ~g~l~~y~Gny~~~~ 239 (530)
T COG0488 225 RGKLTPYKGNYSSYL 239 (530)
T ss_pred CCceeEecCCHHHHH
Confidence 9987 4777665443
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-51 Score=518.61 Aligned_cols=200 Identities=17% Similarity=0.284 Sum_probs=157.3
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|+++.++ ++..+|+|+||+|++|++++|+|||||||||||++|+|...+ .+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc--
Confidence 467788876542 123589999999999999999999999999999999998665 5799998752
Q ss_pred ccccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHH
Q 000517 928 VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-IKDSLVGIPGVNGLSTEQR 1006 (1449)
Q Consensus 928 ~~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqr 1006 (1449)
..+||++|+.. ..+++.++..+......+ .. .++.+.++++.+++.+ ..+..+ ..||||||
T Consensus 572 ------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~----~~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GV----PEQKLRAHLGSFGVTGNLALQPM-----YTLSGGQK 633 (718)
T ss_pred ------eeEEEEecccc--ccCCcchhHHHHHHHhcC-CC----CHHHHHHHHHHCCCChHHhcCCc-----cccCHHHH
Confidence 35899999752 445666664332111111 11 1345788999999974 455554 37999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEE-EecC
Q 000517 1007 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRII-YCGP 1085 (1449)
Q Consensus 1007 qRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v-~~G~ 1085 (1449)
|||+||++|+.+|++|+|||||+|||+.+...+.+.|++. +.|||++||++. .+...+|++++|. +|+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~drv~~l~-~G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDELWVVS-EGKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCC
Confidence 9999999999999999999999999999999998888765 349999999986 4777899999997 58888 7776
Q ss_pred C
Q 000517 1086 L 1086 (1449)
Q Consensus 1086 ~ 1086 (1449)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-50 Score=463.03 Aligned_cols=457 Identities=21% Similarity=0.354 Sum_probs=354.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCC----ceEEEEcCCCccCC
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP----KTSAYISQNDLHIA 258 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 258 (1449)
...+++|||+.|++||+++|+|.||||||||+++|.|.++|+ +|+|.++|+++.-..|+ .-||+|.||..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 467999999999999999999999999999999999999998 99999999988655543 46899999999999
Q ss_pred CCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 259 EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
++||.||+..+..-.... . +.+++ ....++.+.+.+||+-..|.+|++
T Consensus 93 ~lTV~ENiiLg~e~~~~~-~------~~~~~------------------------~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSKGG-L------IDRRQ------------------------ARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCcccccc-c------cCHHH------------------------HHHHHHHHHHHhCCCCCccceeec-
Confidence 999999999875421000 0 00000 112357788999999999999998
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
||-||||||.|-++|+.+|++|+|||||+-|-|....++++.|+++++ .|+|+|+ |+|-..|+.+.||++.+|.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~-ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIF-ITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEE-EeccHHHHHHhhCeeEEEe
Confidence 999999999999999999999999999999999999999999999986 5777665 5688999999999999999
Q ss_pred CCeEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHhcChhhhhhhhcccCCCCccCCHHHHHHHHhcChhhHhHHHHhc
Q 000517 419 EGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELL 498 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 498 (1449)
.|+++-.-++ .++ .+.++.++
T Consensus 215 ~Gkvvgt~~~----------------~~~---------------------------~t~~ela~---------------- 235 (501)
T COG3845 215 RGKVVGTVDP----------------VAE---------------------------TTEEELAE---------------- 235 (501)
T ss_pred CCeEEeeecC----------------CCC---------------------------CCHHHHHH----------------
Confidence 9998643210 000 00000000
Q ss_pred CcccCCCCCCCccccCcccccHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhhhHH
Q 000517 499 VPYDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMRRNSFVYVFKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGS 578 (1449)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~R~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~g~ 578 (1449)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T COG3845 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhhhHHHhhcccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcccHHHHHHHH
Q 000517 579 LYFSLVVLLVDGMPELSMTIQRLEVFYKQQELCFYPAWAYAIPATILKVPLSLVASLAWTCLTYYVIGYSPEVWRFFRQF 658 (1449)
Q Consensus 579 lff~~~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~lP~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~ 658 (1449)
.|+|
T Consensus 236 ----------------------------------------------------------------lMvG------------ 239 (501)
T COG3845 236 ----------------------------------------------------------------LMVG------------ 239 (501)
T ss_pred ----------------------------------------------------------------HhcC------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhhccccCCChhHHHHHHHhHcHHHHHHHHHHHHhhcCCc
Q 000517 659 ILLFASHFTSISMFRFMASVFQTEFAAMTAGSVVILFVFLFGGFVISRPSMPAWLKWGFWISPVTYGEIGLSVNEFLAPR 738 (1449)
Q Consensus 659 l~l~l~~~~~~sl~~~i~a~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 738 (1449)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T COG3845 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCccchhhhhccCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccchhhhhhhcccccCCCC
Q 000517 739 WQKMLPTNTTIGQEILESRGLNFDGFIFWISLGALFGIALLLNIGFTLALTFLKSSGSSRVMISHEKLAKMQESEDSSYG 818 (1449)
Q Consensus 739 ~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~l~g~~~~f~i~~~laL~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 818 (1449)
.++. . ....
T Consensus 240 ------------~~v~-----------------------------------------------~------------~~~~ 248 (501)
T COG3845 240 ------------REVV-----------------------------------------------L------------RVVK 248 (501)
T ss_pred ------------Cccc-----------------------------------------------c------------cccc
Confidence 0000 0 0000
Q ss_pred CCcccCCCCCCCCCcccccCCccccCCCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCC
Q 000517 819 EPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGA 898 (1449)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGa 898 (1449)
. . . .++ ...++++|++..-+ .....+++|||++++||++||.|..|-
T Consensus 249 -~---~--~--------~pg-------~~vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAGV~GN 295 (501)
T COG3845 249 -P---P--S--------TPG-------EVVLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAGVAGN 295 (501)
T ss_pred -C---C--C--------CCC-------CeEEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEecCCC
Confidence 0 0 0 001 12355666654321 124578999999999999999999999
Q ss_pred ChhHHHhhhcCCCCCCeeEEEEEEcCccC----cc-ccccceEEEEccCC---CCCCCCCHHHHHHHHHHhccC----CC
Q 000517 899 GKTTLMDVLAGRKTSGYVEGEIKISGYPK----VQ-ETFARVSGYCEQTD---IHSPNITVEESVIFSAWLRLA----PE 966 (1449)
Q Consensus 899 GKSTLl~~L~g~~~~~~~~G~I~i~G~~~----~~-~~~~~~~gyv~Q~d---~~~~~lTv~e~l~f~~~lr~~----~~ 966 (1449)
|-+.|+.+|+|..++ .+|+|.++|.+. .. ...+..+||||.|. .+.+.+|+.||+.+...-+.+ .-
T Consensus 296 GQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~ 373 (501)
T COG3845 296 GQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGF 373 (501)
T ss_pred CHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccc
Confidence 999999999998754 359999999985 22 23345789999876 346889999999876432211 12
Q ss_pred CChHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000517 967 INSKTKAEFVNEVLETIELDAIK-DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045 (1449)
Q Consensus 967 ~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~ 1045 (1449)
.......++..++++.++..... +.. .+.||||++||+-+||+|..+|++|+..+||.|||..+.+.|.+.|.+
T Consensus 374 l~~~~i~~~a~~li~~fdVr~~~~~~~-----a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e 448 (501)
T COG3845 374 LDRRAIRKFARELIEEFDVRAPSPDAP-----ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE 448 (501)
T ss_pred cCHHHHHHHHHHHHHHcCccCCCCCcc-----hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH
Confidence 34566778899999999886322 222 357999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCC
Q 000517 1046 IVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGK 1088 (1449)
Q Consensus 1046 l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~ 1088 (1449)
.++.|+.|++++-+.+ ++++.+|++.+|. +|+++...++.+
T Consensus 449 ~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~-~Gri~~~~~~~~ 489 (501)
T COG3845 449 LRDAGKAVLLISEDLD-EILELSDRIAVIY-EGRIVGIVPPEE 489 (501)
T ss_pred HHhcCCEEEEEehhHH-HHHHhhheeeeee-CCceeccccccc
Confidence 9999999999999987 7999999999998 589998888764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=377.33 Aligned_cols=207 Identities=27% Similarity=0.382 Sum_probs=185.0
Q ss_pred cccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc----cccccceEEEEccCCC
Q 000517 869 FADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV----QETFARVSGYCEQTDI 944 (1449)
Q Consensus 869 ~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~----~~~~~~~~gyv~Q~d~ 944 (1449)
+.++..++|+|||++|++||+++|+|||||||||||+||.|...+ .+|+|.++|.+.. -...|+.+|+|+|+..
T Consensus 10 K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~--~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fn 87 (240)
T COG1126 10 KSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP--DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFN 87 (240)
T ss_pred EEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC--CCceEEECCEeccchhhHHHHHHhcCeeccccc
Confidence 345678899999999999999999999999999999999998765 5899999996542 2357889999999999
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000517 945 HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 1024 (1449)
Q Consensus 945 ~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illL 1024 (1449)
+||++||.||+.++...- ...++++.++...++|+.+||.+.+|... .+|||||||||+|||||+.+|+++++
T Consensus 88 LFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGGQqQRVAIARALaM~P~vmLF 160 (240)
T COG1126 88 LFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMDPKVMLF 160 (240)
T ss_pred ccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcHHHHHHHHHHHHcCCCCEEee
Confidence 999999999999875422 24567778888999999999999999884 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|||||+|||+...++.+.+++++++|.|.||+||+... ..+.+||++.|+ +|+++..|++
T Consensus 161 DEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd-~G~iie~g~p 220 (240)
T COG1126 161 DEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMD-QGKIIEEGPP 220 (240)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEee-CCEEEEecCH
Confidence 99999999999999999999999999999999999875 567899999997 5899999976
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=394.73 Aligned_cols=200 Identities=19% Similarity=0.259 Sum_probs=155.2
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|+++.++. +..++++++|-|.+++.+|++||||+|||||||++.|...| ..|.|.-.-+.
T Consensus 389 vi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H~- 453 (614)
T KOG0927|consen 389 VIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSHN- 453 (614)
T ss_pred eEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--ccccccccccc-
Confidence 4677888775532 12589999999999999999999999999999999998765 46776543322
Q ss_pred ccccccceEEEEccC--CCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHH
Q 000517 928 VQETFARVSGYCEQT--DIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI-KDSLVGIPGVNGLSTE 1004 (1449)
Q Consensus 928 ~~~~~~~~~gyv~Q~--d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgG 1004 (1449)
++++..|+ +.+.-..++-|++.=. ...+...+.+..++.++||+.. .+..+ +.||+|
T Consensus 454 -------~~~~y~Qh~~e~ldl~~s~le~~~~~--------~~~~~~~e~~r~ilgrfgLtgd~q~~p~-----~~LS~G 513 (614)
T KOG0927|consen 454 -------KLPRYNQHLAEQLDLDKSSLEFMMPK--------FPDEKELEEMRSILGRFGLTGDAQVVPM-----SQLSDG 513 (614)
T ss_pred -------cchhhhhhhHhhcCcchhHHHHHHHh--------ccccchHHHHHHHHHHhCCCccccccch-----hhcccc
Confidence 23444443 2333456677765421 1113455678899999999844 34443 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1005 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1005 qrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
||+||..|+.++..|.||+|||||+|||..+...+.++|.+. ..+||+++||... |-+.++++.+..+++...+.|
T Consensus 514 qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 514 QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCc
Confidence 999999999999999999999999999999999999999875 5689999999764 778899999998888888888
Q ss_pred CC
Q 000517 1085 PL 1086 (1449)
Q Consensus 1085 ~~ 1086 (1449)
..
T Consensus 590 ~i 591 (614)
T KOG0927|consen 590 DI 591 (614)
T ss_pred cH
Confidence 64
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=359.82 Aligned_cols=221 Identities=24% Similarity=0.412 Sum_probs=186.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCC----CCCceEEEEcCCCccCC
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF----VPPKTSAYISQNDLHIA 258 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~----~~~~~~~yv~Q~d~~~~ 258 (1449)
..++|+|||++|++||+++|+|||||||||||++|.|+..|+ +|+|.++|.++... ..|+.+|+|+|+..+||
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 457999999999999999999999999999999999999998 99999999765321 23678999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 259 EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
++||.||+..+...-. ..++.| .+....++|+.+||.+.+|.+.+.
T Consensus 91 HlTvleNv~lap~~v~---------~~~k~e------------------------A~~~A~~lL~~VGL~~ka~~yP~q- 136 (240)
T COG1126 91 HLTVLENVTLAPVKVK---------KLSKAE------------------------AREKALELLEKVGLADKADAYPAQ- 136 (240)
T ss_pred cchHHHHHHhhhHHHc---------CCCHHH------------------------HHHHHHHHHHHcCchhhhhhCccc-
Confidence 9999999998753211 111111 112345689999999999998876
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
|||||||||+|||||+.+|+++++|||||+|||....++.+.++++++. |-|.++. +|....+.+.+|||+.|+
T Consensus 137 ----LSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivV-THEM~FAr~VadrviFmd 210 (240)
T COG1126 137 ----LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIV-THEMGFAREVADRVIFMD 210 (240)
T ss_pred ----cCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEE-echhHHHHHhhheEEEee
Confidence 9999999999999999999999999999999999999999999999974 6677665 566888999999999999
Q ss_pred CCeEEEecChhhHHHHHHhcCCCCCCCCChhhHHHH
Q 000517 419 EGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQE 454 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~e 454 (1449)
+|+++..|+++++ |..|.+....+|+..
T Consensus 211 ~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 211 QGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred CCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 9999999999887 456666556677654
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=392.91 Aligned_cols=213 Identities=32% Similarity=0.479 Sum_probs=188.2
Q ss_pred ccc-cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc--ccccceEEEEccCCCCC
Q 000517 870 ADR-KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ--ETFARVSGYCEQTDIHS 946 (1449)
Q Consensus 870 ~~~-~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~ 946 (1449)
.++ ++.+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.+... ...++.+||++|++.++
T Consensus 13 ~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~ 90 (293)
T COG1131 13 KYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLY 90 (293)
T ss_pred EeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCccCHHHHHhheEEEccCCCCC
Confidence 345 47899999999999999999999999999999999998776 58999999987654 46678899999999999
Q ss_pred CCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000517 947 PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1026 (1449)
Q Consensus 947 ~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDE 1026 (1449)
+.+||+|+|.|.+.++.... ...+++++++++.++|.+..++.++ +||+||||||+||+||+++|++|||||
T Consensus 91 ~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~~-----~lS~G~kqrl~ia~aL~~~P~lliLDE 162 (293)
T COG1131 91 PELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKVR-----TLSGGMKQRLSIALALLHDPELLILDE 162 (293)
T ss_pred ccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcchh-----hcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 99999999999999986542 4556789999999999986666654 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCCChhHHHHHHh
Q 000517 1027 PTTGLDARAAAIVMRAVKNIVNTG-RTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYFE 1098 (1449)
Q Consensus 1027 PTsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~~~~~~~~~f~ 1098 (1449)
||+|||+.++..+++.|++++++| +||+++||+++ ++...||++++|. +|++++.|+. .++...+.
T Consensus 163 Pt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~-~G~~~~~g~~----~~l~~~~~ 229 (293)
T COG1131 163 PTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILN-DGKIIAEGTP----EELKEKFG 229 (293)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEe-CCEEEEeCCH----HHHHHhhc
Confidence 999999999999999999999887 89999999987 6888899999998 5899999976 34555544
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=361.97 Aligned_cols=222 Identities=27% Similarity=0.398 Sum_probs=193.3
Q ss_pred ccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc------ccccceEEEEccCC
Q 000517 870 ADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ------ETFARVSGYCEQTD 943 (1449)
Q Consensus 870 ~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~~~~~~gyv~Q~d 943 (1449)
..+.+.||+|||++|++||+++||||||+||||||++|.|...| .+|+|.++|.++.+ ...++++|+++|+-
T Consensus 17 ~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~g 94 (263)
T COG1127 17 SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQG 94 (263)
T ss_pred ecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcchhccCHHHHHHHHhheeEEeecc
Confidence 34667899999999999999999999999999999999998876 58999999988532 24678899999999
Q ss_pred CCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000517 944 IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 1022 (1449)
Q Consensus 944 ~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~il 1022 (1449)
.+|.++||+||+.|.. |.....+++..++.+..-|+.+||... .+.. +.+||||+|||+++||||+.+|+||
T Consensus 95 ALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsELSGGM~KRvaLARAialdPell 167 (263)
T COG1127 95 ALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSELSGGMRKRVALARAIALDPELL 167 (263)
T ss_pred ccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chhhcchHHHHHHHHHHHhcCCCEE
Confidence 9999999999999864 444456777888888889999999876 5554 4589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCC----ChhHHHHHH
Q 000517 1023 FMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGK----HSSQVIEYF 1097 (1449)
Q Consensus 1023 lLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~----~~~~~~~~f 1097 (1449)
|+||||+||||.++..+.++|+++.++ |.|++++|||.+ +++..+|++++|. +|+++..|++++ ...-+.+||
T Consensus 168 ~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~-~gkv~~~Gt~~el~~sd~P~v~qf~ 245 (263)
T COG1127 168 FLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLA-DGKVIAEGTPEELLASDDPWVRQFF 245 (263)
T ss_pred EecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEe-CCEEEEeCCHHHHHhCCCHHHHHHh
Confidence 999999999999999999999999876 999999999986 6899999999998 589999999864 222367888
Q ss_pred hcCCC
Q 000517 1098 EGISG 1102 (1449)
Q Consensus 1098 ~~~~~ 1102 (1449)
.+..+
T Consensus 246 ~G~~~ 250 (263)
T COG1127 246 NGIRD 250 (263)
T ss_pred cCCCC
Confidence 87643
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=372.77 Aligned_cols=203 Identities=27% Similarity=0.352 Sum_probs=183.5
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc------ccccceEEEEccCCCCC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ------ETFARVSGYCEQTDIHS 946 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~~~~~~gyv~Q~d~~~ 946 (1449)
...+|+|||++|++||++||+|+||||||||++++.+...| .+|+|.+||.++.. +.+|+.+|+++|+..++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 35799999999999999999999999999999999998765 58999999976432 35678999999999999
Q ss_pred CCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000517 947 PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1026 (1449)
Q Consensus 947 ~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDE 1026 (1449)
.+.||.||+.|...+.. .++++.+++|.++++.+||.+.++... .+|||||||||+|||||+.+|+||++||
T Consensus 96 ssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 96 SSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred ccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCc-----hhcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 99999999999877754 567888999999999999999888874 4899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1027 PTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1027 PTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
|||+|||.+...|.++|+++.++ |.|||++||+++ -+-+.|||+.+|. +|++++.|+..
T Consensus 168 aTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~-~G~lvE~G~v~ 227 (339)
T COG1135 168 ATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLD-QGRLVEEGTVS 227 (339)
T ss_pred ccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEee-CCEEEEeccHH
Confidence 99999999999999999999755 999999999986 3677899999997 59999999874
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=367.69 Aligned_cols=218 Identities=29% Similarity=0.460 Sum_probs=184.7
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++++|++++++ ...+|+|||+++++|++++|+||||||||||+|+|.|..++ .+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~-------------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p--~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG-------------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC-------------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CcceEEEccccc
Confidence 467788877653 22599999999999999999999999999999999997765 589999999876
Q ss_pred ccccccceEEEEccCCCC--CCCCCHHHHHHHHHHhccC-CCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000517 928 VQETFARVSGYCEQTDIH--SPNITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTE 1004 (1449)
Q Consensus 928 ~~~~~~~~~gyv~Q~d~~--~~~lTv~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1004 (1449)
....-+..+|||||...+ ..-+||+|-+..+..-+.. -....+..++.++++|+.+|+.+.+|+.+| .||||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGG 143 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGG 143 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcH
Confidence 544445689999995422 2348999999876332221 011223446889999999999999999987 69999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1005 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1005 qrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
|+|||.|||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||++ .+.+.||+++.|+ +++++.|
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G 220 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASG 220 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEecc
Confidence 999999999999999999999999999999999999999999988999999999997 5889999999996 5899999
Q ss_pred CCCC
Q 000517 1085 PLGK 1088 (1449)
Q Consensus 1085 ~~~~ 1088 (1449)
++++
T Consensus 221 ~~~~ 224 (254)
T COG1121 221 PPEE 224 (254)
T ss_pred Chhh
Confidence 9875
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=373.12 Aligned_cols=209 Identities=30% Similarity=0.438 Sum_probs=182.3
Q ss_pred cccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---ccccceEEEEccCCCCCC
Q 000517 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSP 947 (1449)
Q Consensus 871 ~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~ 947 (1449)
++++.+|+|+||++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.. +.+.+.+|||||.....+
T Consensus 12 y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~ 89 (258)
T COG1120 12 YGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89 (258)
T ss_pred ECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCC
Confidence 3457799999999999999999999999999999999997765 48999999988643 567889999999998888
Q ss_pred CCCHHHHHHHHHHhccCC-CCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000517 948 NITVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1026 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDE 1026 (1449)
.+||+|.+.++..-.... ....++..+.++++|+.+|+.+.+++.+. .||||||||+.|||||+++|+||+|||
T Consensus 90 ~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALaQ~~~iLLLDE 164 (258)
T COG1120 90 GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALAQETPILLLDE 164 (258)
T ss_pred CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHhcCCCEEEeCC
Confidence 999999999874322211 11234445579999999999999999865 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCC
Q 000517 1027 PTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGK 1088 (1449)
Q Consensus 1027 PTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~ 1088 (1449)
|||+||...+..+++.++++++ +|+|||+++||++. ....+|++++|+ +|+++..|++.+
T Consensus 165 PTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk-~G~i~a~G~p~e 225 (258)
T COG1120 165 PTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLK-DGKIVAQGTPEE 225 (258)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEE-CCeEEeecCcch
Confidence 9999999999999999999984 59999999999985 678999999998 589999999864
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=370.06 Aligned_cols=223 Identities=26% Similarity=0.373 Sum_probs=194.2
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC------CceEEEEcCCCcc
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP------PKTSAYISQNDLH 256 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~ 256 (1449)
...+|+|||++|++|++.+|+|+||||||||++++.++-.|+ +|+|.++|.++..... |+.+|+++|+..+
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnL 94 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNL 94 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEeccccc
Confidence 467999999999999999999999999999999999999998 9999999988876542 5789999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccc
Q 000517 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVG 336 (1449)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 336 (1449)
+...||.||+.|..++.+... .+ .+.++.++|+.+||++.+|.+..
T Consensus 95 LssrTV~~NvA~PLeiag~~k----------~e------------------------i~~RV~elLelVgL~dk~~~yP~ 140 (339)
T COG1135 95 LSSRTVFENVAFPLELAGVPK----------AE------------------------IKQRVAELLELVGLSDKADRYPA 140 (339)
T ss_pred cccchHHhhhhhhHhhcCCCH----------HH------------------------HHHHHHHHHHHcCChhhhccCch
Confidence 999999999999988776321 11 12356789999999999999887
Q ss_pred ccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEE
Q 000517 337 NAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416 (1449)
Q Consensus 337 ~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~l 416 (1449)
+ |||||||||+|||||+.+|+|||+|||||+|||.|+..|++.|+++.++.|-|+|+. +|-.+-+-+.||||.+
T Consensus 141 q-----LSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlI-THEm~Vvk~ic~rVav 214 (339)
T COG1135 141 Q-----LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLI-THEMEVVKRICDRVAV 214 (339)
T ss_pred h-----cCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEE-echHHHHHHHhhhheE
Confidence 6 999999999999999999999999999999999999999999999998888777765 4557788899999999
Q ss_pred EeCCeEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHhc
Q 000517 417 MAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVL 456 (1449)
Q Consensus 417 L~~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~ 456 (1449)
|++|+++++|+..++ |..|.+.-...|+.+..
T Consensus 215 m~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 215 LDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246 (339)
T ss_pred eeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhc
Confidence 999999999999888 44565555556665544
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=407.09 Aligned_cols=216 Identities=22% Similarity=0.352 Sum_probs=185.6
Q ss_pred cEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000517 847 LTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP 926 (1449)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 926 (1449)
..++.+|++..++ .+++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~-----------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFE-----------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEec-----------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCEE
Confidence 3567777775542 1235699999999999999999999999999999999998765 58999999987
Q ss_pred Ccc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000517 927 KVQ--ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTE 1004 (1449)
Q Consensus 927 ~~~--~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1004 (1449)
+.. ...++.+|||+|++.+++.+||+|++.|.+.++. ...++.++.++++++.+||.+..++.++ .||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHH
Confidence 642 2356779999999999999999999999876653 2233445678999999999988888764 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1005 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1005 qrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
|||||+||+||+.+|+||+|||||+|||+.+++.+++.|++++ +|+|||++||+++ ++...+|++++|. +|+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~-~GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIIS-QGRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEec
Confidence 9999999999999999999999999999999999999999985 5999999999986 5677899999998 58999999
Q ss_pred CC
Q 000517 1085 PL 1086 (1449)
Q Consensus 1085 ~~ 1086 (1449)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 86
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=358.28 Aligned_cols=207 Identities=26% Similarity=0.368 Sum_probs=186.1
Q ss_pred cccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---ccccceEEEEccCCCC
Q 000517 869 FADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIH 945 (1449)
Q Consensus 869 ~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~ 945 (1449)
+.++++.+++|+|++|++||+++++|||||||||+|++|.+...+ .+|+|.+||.++.. ..+|+.+|||-|+-.+
T Consensus 9 k~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~~~d~~~LRr~IGYviQqigL 86 (309)
T COG1125 9 KRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDISDLDPVELRRKIGYVIQQIGL 86 (309)
T ss_pred hhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecccCCHHHHHHhhhhhhhhccc
Confidence 344567899999999999999999999999999999999998775 58999999998654 4688999999999999
Q ss_pred CCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000517 946 SPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA--IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIF 1023 (1449)
Q Consensus 946 ~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~ill 1023 (1449)
||++||.||+.+-..+. ..++++.+++++|+|+.+||++ ++++. +++|||||+|||.+||||+++|+||+
T Consensus 87 FPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSGGQQQRVGv~RALAadP~ilL 158 (309)
T COG1125 87 FPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSGGQQQRVGVARALAADPPILL 158 (309)
T ss_pred CCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCcchhhHHHHHHHHhcCCCeEe
Confidence 99999999998865553 4567888899999999999975 66666 45899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1024 MDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1024 LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
||||.++|||-++..+++.++++.++ |+|||++|||.+ |.+.++|++.+|+ +|+++.++++.
T Consensus 159 MDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q~~~P~ 221 (309)
T COG1125 159 MDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQYDTPD 221 (309)
T ss_pred ecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEEeCCHH
Confidence 99999999999999999999999765 999999999986 7889999999998 68999999874
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=361.68 Aligned_cols=192 Identities=28% Similarity=0.406 Sum_probs=171.9
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCCCCCCHH
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVE 952 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~ 952 (1449)
...+|+|||++|++||+++|+||||||||||||+|+|..++ .+|+|.++|.+.. .....+|||+|++.++|.+||+
T Consensus 15 ~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 36799999999999999999999999999999999998775 5899999998862 3345689999999999999999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000517 953 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032 (1449)
Q Consensus 953 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD 1032 (1449)
||+.++...+. .+++++.++++++|+.+||.+..|... .+|||||||||+|||||+.+|+||+||||.+.||
T Consensus 91 ~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALD 162 (248)
T COG1116 91 DNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQRVAIARALATRPKLLLLDEPFGALD 162 (248)
T ss_pred hhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHHHHHHHHHHhcCCCEEEEcCCcchhh
Confidence 99999877653 345566778999999999999998874 5899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 1033 ARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 1033 ~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
+.|+..+++.|.++.+ .++|||++|||.+ |...+.|||++|..+
T Consensus 163 alTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 163 ALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 9999999999999864 5899999999987 677889999999853
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=354.48 Aligned_cols=214 Identities=30% Similarity=0.402 Sum_probs=182.9
Q ss_pred ccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc------ccccceEEEEccCCCC
Q 000517 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ------ETFARVSGYCEQTDIH 945 (1449)
Q Consensus 872 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~~~~~~gyv~Q~d~~ 945 (1449)
+++++|+|||+.|++||++||+|+|||||||||++|.|...+ .+|+|.+||.++.. +.+|+.+||++|+..+
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~--t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP--TSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC--CcceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 467899999999999999999999999999999999997654 58999999976422 3567889999999999
Q ss_pred CCCCCHHHHHHHHHHhccC-----CCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000517 946 SPNITVEESVIFSAWLRLA-----PEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS 1020 (1449)
Q Consensus 946 ~~~lTv~e~l~f~~~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~ 1020 (1449)
.+.+||.+|++.+..-+.+ -....++.+..+-+.|+.+|+.+.+.+..+ .|||||+|||+|||||+.+|+
T Consensus 93 v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-----~LSGGQQQRVaIARaL~Q~pk 167 (258)
T COG3638 93 VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-----TLSGGQQQRVAIARALVQQPK 167 (258)
T ss_pred ccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc-----cCCcchhHHHHHHHHHhcCCC
Confidence 9999999999876422111 123445556677889999999998888765 799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCCChhHHH
Q 000517 1021 IIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVI 1094 (1449)
Q Consensus 1021 illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~~~~~~~ 1094 (1449)
|++.|||+++|||.+++.||+.|+++++ .|.|||++.||.+. ..++|||++-|+ .|+++|+||..+.+++.+
T Consensus 168 iILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~-~G~ivfDg~~~el~~~~~ 240 (258)
T COG3638 168 IILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK-AGRIVFDGPASELTDEAL 240 (258)
T ss_pred EEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec-CCcEEEeCChhhhhHHHH
Confidence 9999999999999999999999999975 48999999999875 568899999997 599999999876544433
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=343.19 Aligned_cols=201 Identities=28% Similarity=0.416 Sum_probs=184.8
Q ss_pred eeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc--ccccceEEEEccCCCCCCCCCHH
Q 000517 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ--ETFARVSGYCEQTDIHSPNITVE 952 (1449)
Q Consensus 875 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~~lTv~ 952 (1449)
++++||||+++.||++||+|+|||||||+|++|++...| .+|.|.+||.+... ...++.+|.++.+..++..+|++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 489999999999999999999999999999999998776 58999999988533 45788999999888899999999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000517 953 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032 (1449)
Q Consensus 953 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD 1032 (1449)
|||.|.+.+.. ....+.+++++++.+.++|.++.|+.+| ++|.|+||||+|||||+++|++++|||||||||
T Consensus 94 Enl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 99999998763 4556778899999999999999999987 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1033 ARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1033 ~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
..+...+.+.++++.+.|++||++||..+ ++...||++++|. .|++++.|++.
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh-~Gevv~~gs~~ 218 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLH-KGEVVLEGSIE 218 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEe-cCcEEEcCCHH
Confidence 99999999999999888999999999975 7888999999998 58999999874
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=356.35 Aligned_cols=193 Identities=30% Similarity=0.460 Sum_probs=168.1
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc------cc-ccceEEEEccCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ------ET-FARVSGYCEQTDIHS 946 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~-~~~~~gyv~Q~d~~~ 946 (1449)
..+|++||++|++||+++|||||||||||||++|.|...| .+|.|.++|.+... .. .++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 5799999999999999999999999999999999998766 58999999976432 12 345799999999999
Q ss_pred CCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccccc-ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000517 947 PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKD-SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1025 (1449)
Q Consensus 947 ~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLD 1025 (1449)
|++||+||+.+...+.... ....++.++++++.+||.+..+ ..+ .+|||||||||+|||||+.+|+||+.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~p-----~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKKP-----SELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCCc-----hhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 9999999999876554322 2255677899999999987665 543 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcE
Q 000517 1026 EPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079 (1449)
Q Consensus 1026 EPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~ 1079 (1449)
|||.+||+.++..|++.+++++++ |+|||++|||| ++...+||++.|.+ |+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 999999999999999999999865 99999999997 57789999999985 66
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=379.67 Aligned_cols=212 Identities=32% Similarity=0.497 Sum_probs=185.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCC--CCCceEEEEcCCCccCCCC
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF--VPPKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 260 (1449)
++.+|+|||+.+++|++++|+||||||||||||+|+|++.|+ +|+|.++|.+.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 357999999999999999999999999999999999999997 99999999887652 3357899999999999999
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
||+|||.|.+++++..... .+..++++++.+||++.+++.+++
T Consensus 94 T~~e~l~~~~~l~~~~~~~----------------------------------~~~~~~~~l~~~~L~~~~~~~~~~--- 136 (293)
T COG1131 94 TVRENLEFFARLYGLSKEE----------------------------------AEERIEELLELFGLEDKANKKVRT--- 136 (293)
T ss_pred cHHHHHHHHHHHhCCChhH----------------------------------HHHHHHHHHHHcCCchhhCcchhh---
Confidence 9999999999987643200 112467899999999866666655
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
+|+||||||+||.||+++|++|||||||+||||.++.++++.|+++++..+.|++++. |...++..+||+|++|++|
T Consensus 137 --lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvliss-H~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 137 --LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLST-HILEEAEELCDRVIILNDG 213 (293)
T ss_pred --cCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeC-CcHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999986546777765 5567899999999999999
Q ss_pred eEEEecChhhHHHHHHh
Q 000517 421 KIVYHGPQDHVLAFFED 437 (1449)
Q Consensus 421 ~iv~~G~~~~~~~~F~~ 437 (1449)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999998776543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=364.84 Aligned_cols=209 Identities=31% Similarity=0.450 Sum_probs=181.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1449)
++||+|+|+.+++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.+... .+.+|||||.....+.+
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~ 91 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL 91 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc
Confidence 46999999999999999999999999999999999999998 9999999999877654 47899999999888999
Q ss_pred CHHHHHHHHHHcc-CCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccc
Q 000517 261 TVRETVDFSARCQ-GVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAM 339 (1449)
Q Consensus 261 TV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 339 (1449)
||+|-+.++..-. +... ..+ .++...++..|+.+|+.+.+++.+.+
T Consensus 92 tV~d~V~~GR~p~~~~~~------~~~-------------------------~~D~~~v~~aL~~~~~~~la~r~~~~-- 138 (258)
T COG1120 92 TVYELVLLGRYPHLGLFG------RPS-------------------------KEDEEIVEEALELLGLEHLADRPVDE-- 138 (258)
T ss_pred EEeehHhhcCCccccccc------CCC-------------------------HhHHHHHHHHHHHhCcHHHhcCcccc--
Confidence 9999999874321 1000 000 01122467789999999999999887
Q ss_pred cccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeC
Q 000517 340 RRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419 (1449)
Q Consensus 340 ~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~ 419 (1449)
|||||||||.||+||+++|++|+||||||+||...+.++++.+++++++.+.|+|+++ |+...+.++||++++|++
T Consensus 139 ---LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vl-HDlN~A~ryad~~i~lk~ 214 (258)
T COG1120 139 ---LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVL-HDLNLAARYADHLILLKD 214 (258)
T ss_pred ---cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999987788887765 567789999999999999
Q ss_pred CeEEEecChhhHH
Q 000517 420 GKIVYHGPQDHVL 432 (1449)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1449)
|+++.+|++++++
T Consensus 215 G~i~a~G~p~evl 227 (258)
T COG1120 215 GKIVAQGTPEEVL 227 (258)
T ss_pred CeEEeecCcchhc
Confidence 9999999988775
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=360.08 Aligned_cols=207 Identities=29% Similarity=0.459 Sum_probs=186.3
Q ss_pred cccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCc---cCcc-ccccceEEEEccCCCCC
Q 000517 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGY---PKVQ-ETFARVSGYCEQTDIHS 946 (1449)
Q Consensus 871 ~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~---~~~~-~~~~~~~gyv~Q~d~~~ 946 (1449)
.+...+++|||+.|+.||++||+|||||||||||++|||..++ ..|.|.+||. +... ....|.+|||+|+..+|
T Consensus 12 ~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 12 FGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred cccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 3456789999999999999999999999999999999998876 5899999998 5433 33457899999999999
Q ss_pred CCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000517 947 PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1026 (1449)
Q Consensus 947 ~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDE 1026 (1449)
+++||.+|+.|+..++ ...+++.+.+.+++++|+.++|++..+... .+|||||||||++||||+..|++|+|||
T Consensus 90 ~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----~QLSGGQrQRVALARALA~eP~vLLLDE 163 (345)
T COG1118 90 PHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDE 163 (345)
T ss_pred ccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCc-----hhcChHHHHHHHHHHHhhcCCCeEeecC
Confidence 9999999999998877 233456778889999999999999998874 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1027 PTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1027 PTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
|.++||+.-+..+.+.|+++.+. |.|+|++|||+. +.++.+|++++|+ +|+|...||+.
T Consensus 164 Pf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~-~G~Ieqvg~p~ 223 (345)
T COG1118 164 PFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLN-QGRIEQVGPPD 223 (345)
T ss_pred CchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEec-CCeeeeeCCHH
Confidence 99999999999999999999876 999999999986 7999999999998 58999999975
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=374.33 Aligned_cols=217 Identities=28% Similarity=0.465 Sum_probs=193.0
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-CceEEEEcCCCccCCCCCHHH
Q 000517 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTVRE 264 (1449)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 264 (1449)
+|+|+|++|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.++++..| +|.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999998 9999999999999776 478999999999999999999
Q ss_pred HHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCC
Q 000517 265 TVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGIS 344 (1449)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlS 344 (1449)
|+.|+.+.++.... + .+.+++++.+.|+|++..|+++.. ||
T Consensus 95 Niaf~Lk~~~~~k~----------e------------------------i~~rV~eva~~L~l~~lL~r~P~~-----LS 135 (338)
T COG3839 95 NIAFGLKLRGVPKA----------E------------------------IDKRVKEVAKLLGLEHLLNRKPLQ-----LS 135 (338)
T ss_pred HhhhhhhhCCCchH----------H------------------------HHHHHHHHHHHcCChhHHhcCccc-----CC
Confidence 99999988754211 1 123567889999999999998765 99
Q ss_pred hhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEEE
Q 000517 345 GGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVY 424 (1449)
Q Consensus 345 GGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv~ 424 (1449)
|||||||++||||+.+|+++|||||+|.||...+.++...|+++.+..+.|+|. .+|+..|+..++|+|.+|++|+|..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IY-VTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIY-VTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEE-EcCCHHHHHhhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999999999987766655555 5678889999999999999999999
Q ss_pred ecChhhHHHHHHhcCCCCCCCCChhhHHH
Q 000517 425 HGPQDHVLAFFEDCGFRCPERKGVSDFLQ 453 (1449)
Q Consensus 425 ~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ 453 (1449)
.|++.++ |..|.+.-+|.|+-
T Consensus 215 ~g~p~el--------y~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLEL--------YERPANLFVAGFIG 235 (338)
T ss_pred cCChHHH--------hhCccchhhhhhcC
Confidence 9999998 45677777777753
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=374.72 Aligned_cols=206 Identities=27% Similarity=0.401 Sum_probs=185.9
Q ss_pred cccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-ccccceEEEEccCCCCCCCC
Q 000517 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFARVSGYCEQTDIHSPNI 949 (1449)
Q Consensus 871 ~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~gyv~Q~d~~~~~l 949 (1449)
+++..+|+|+|++|++||+++|+|||||||||||++|||...+ .+|+|.|+|.+.+. ...+|.+|+|+|+..++|++
T Consensus 13 yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~--~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhm 90 (338)
T COG3839 13 FGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP--TSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHM 90 (338)
T ss_pred cCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCChhHCCEEEEeCCccccCCC
Confidence 3333399999999999999999999999999999999998765 58999999998765 34568899999999999999
Q ss_pred CHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000517 950 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 1029 (1449)
Q Consensus 950 Tv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTs 1029 (1449)
||+||+.|+.+++. .++++.+++|+++.+.|+|++..|++. ++|||||||||+|||||+++|++++||||.|
T Consensus 91 tV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlS 162 (338)
T COG3839 91 TVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLS 162 (338)
T ss_pred cHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhHHHHHHHHHHhcCCCEEEecCchh
Confidence 99999999987764 356778899999999999999999985 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCC
Q 000517 1030 GLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGK 1088 (1449)
Q Consensus 1030 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~ 1088 (1449)
+||+..+..+...|+++.++ |.|+|.+|||.. |...++|++.+|. +|++...|++.+
T Consensus 163 nLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~p~e 220 (338)
T COG3839 163 NLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGTPLE 220 (338)
T ss_pred HhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCChHH
Confidence 99999999999999998754 899999999974 8899999999998 699999999853
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=346.50 Aligned_cols=208 Identities=27% Similarity=0.430 Sum_probs=186.2
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCC
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAE 259 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (1449)
++.+++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||+++.+... |+.+|||-|.--+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 456999999999999999999999999999999999999998 9999999999887654 7899999999999999
Q ss_pred CCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc--cccccccc
Q 000517 260 MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV--CADTMVGN 337 (1449)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~--~~dt~vg~ 337 (1449)
+||.||+.+...+++.... +.+.+++++|+.+||+. .++++..+
T Consensus 90 ~Tv~eNIa~VP~L~~w~k~----------------------------------~i~~r~~ELl~lvgL~p~~~~~RyP~e 135 (309)
T COG1125 90 LTVAENIATVPKLLGWDKE----------------------------------RIKKRADELLDLVGLDPSEYADRYPHE 135 (309)
T ss_pred ccHHHHHHhhhhhcCCCHH----------------------------------HHHHHHHHHHHHhCCCHHHHhhcCchh
Confidence 9999999998777654321 01235788999999974 67777655
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL 417 (1449)
|||||+|||.+||||+.+|++++||||+++|||.++.++.+-++++.++.++|+|+. +|+.+|.+.++|||++|
T Consensus 136 -----LSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfV-THDidEA~kLadri~vm 209 (309)
T COG1125 136 -----LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFV-THDIDEALKLADRIAVM 209 (309)
T ss_pred -----cCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEE-ecCHHHHHhhhceEEEe
Confidence 999999999999999999999999999999999999999999999988888887764 68899999999999999
Q ss_pred eCCeEEEecChhhHHH
Q 000517 418 AEGKIVYHGPQDHVLA 433 (1449)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1449)
++|+++..+++++++.
T Consensus 210 ~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 210 DAGEIVQYDTPDEILA 225 (309)
T ss_pred cCCeEEEeCCHHHHHh
Confidence 9999999999999874
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=377.81 Aligned_cols=223 Identities=26% Similarity=0.451 Sum_probs=197.7
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-CceEEEEcCCCccCCCCC
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 261 (1449)
...+|+|+|+.|++||+++|||||||||||||++|||+..|+ +|+|.++|++++...+ +|.+++|+|+-.+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 356999999999999999999999999999999999999998 9999999999988766 578999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|+||+.|+.+.++...+. +.+.+++++|+.++|++.++.++..
T Consensus 94 V~~NVafGLk~~~~~~~~---------------------------------~i~~rv~e~L~lV~L~~~~~R~p~q---- 136 (352)
T COG3842 94 VEENVAFGLKVRKKLKKA---------------------------------EIKARVEEALELVGLEGFADRKPHQ---- 136 (352)
T ss_pred HHHHhhhhhhhcCCCCHH---------------------------------HHHHHHHHHHHHcCchhhhhhChhh----
Confidence 999999998844321110 0123578899999999999988876
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
|||||||||+|||||+.+|++||||||.|+||..-+.++..-|+++.++.|.|.|. ++|+..|.+.++|||++|++|+
T Consensus 137 -LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~-VTHDqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 137 -LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVY-VTHDQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred -hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEE-EECCHHHHhhhccceEEccCCc
Confidence 99999999999999999999999999999999999999999999999887766665 5678899999999999999999
Q ss_pred EEEecChhhHHHHHHhcCCCCCCCCChhhHHHHh
Q 000517 422 IVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEV 455 (1449)
Q Consensus 422 iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev 455 (1449)
|...|+++++ |..|...-+|+|+-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999999 5678888888887653
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=337.27 Aligned_cols=218 Identities=28% Similarity=0.369 Sum_probs=185.0
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCC---CCeeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT---SGYVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~---~~~~~G~I~i~G 924 (1449)
.++.+|++.++ +++++|+|||+.|++++++||+|||||||||||++|..... .-.++|+|.++|
T Consensus 7 ~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 45666776554 45789999999999999999999999999999999987432 235789999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccc-ccccccCCCC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI-KDSLVGIPGV 998 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~ 998 (1449)
.++.. ..+|+.+|.|+|.+.-|| +|++||+.|+.++....+ ++.++.|++.|+...|.+- +|.+-.+ .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s--a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS--A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--c
Confidence 87643 357899999999999999 999999999987765432 6778899999999988753 4444222 2
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCc
Q 000517 999 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGG 1078 (1449)
Q Consensus 999 ~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG 1078 (1449)
.+|||||+|||||||||+.+|+||+||||||+|||.+...|.++|.+++ +.-|||++||.+. ......|+...+. .|
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~-~G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFY-LG 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhc-cc
Confidence 3699999999999999999999999999999999999999999999997 5789999999986 5678889999998 58
Q ss_pred EEEEecCCC
Q 000517 1079 RIIYCGPLG 1087 (1449)
Q Consensus 1079 ~~v~~G~~~ 1087 (1449)
+++++|+..
T Consensus 225 ~LvE~g~T~ 233 (253)
T COG1117 225 ELVEFGPTD 233 (253)
T ss_pred EEEEEcCHH
Confidence 999999973
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=330.36 Aligned_cols=200 Identities=27% Similarity=0.368 Sum_probs=175.7
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc------ccccceEEEEccCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ------ETFARVSGYCEQTDIHSP 947 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~~~~~~gyv~Q~d~~~~ 947 (1449)
..+|+||||.|++||++-|+||||||||||||+|.+...+ ..|+|.++|+++.. ..+||++|+|+||..+.+
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p--t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~ 92 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP--TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC--CCceEEECCeecccccccccchhhheeeeEeeeccccc
Confidence 5699999999999999999999999999999999997665 58999999998542 236889999999999999
Q ss_pred CCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000517 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1027 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEP 1027 (1449)
+.||+||+.|...... .+..+.+++|.++|+.+||.+..+... .+|||||+|||+||||++.+|++|+.|||
T Consensus 93 ~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~lP-----~~LSGGEQQRvaIARAiV~~P~vLlADEP 164 (223)
T COG2884 93 DRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARALP-----SQLSGGEQQRVAIARAIVNQPAVLLADEP 164 (223)
T ss_pred cchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcCc-----cccCchHHHHHHHHHHHccCCCeEeecCC
Confidence 9999999999877653 345677889999999999999888763 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcC-eEEEEecCcEEEEecCC
Q 000517 1028 TTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFD-ELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1028 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d-~~~~l~~gG~~v~~G~~ 1086 (1449)
|.+||+..+..||+++.++...|.|||++||+. ++..... +++.|. +|+++.....
T Consensus 165 TGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~--~lv~~~~~rvl~l~-~Grl~~d~~~ 221 (223)
T COG2884 165 TGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL--ELVNRMRHRVLALE-DGRLVRDESR 221 (223)
T ss_pred CCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH--HHHHhccCcEEEEe-CCEEEecccc
Confidence 999999999999999999998999999999985 4555555 556665 6999987644
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=344.83 Aligned_cols=216 Identities=25% Similarity=0.374 Sum_probs=183.3
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC------CceEEEEcCCCcc
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP------PKTSAYISQNDLH 256 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~ 256 (1449)
.+++|+|||+.|++||+++|+|||||||||||++|.|+.+|+ +|+|.+||.++..... ++.+||++|+..+
T Consensus 16 ~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 357999999999999999999999999999999999999998 9999999988765542 4689999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccc
Q 000517 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVG 336 (1449)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 336 (1449)
.+.+||.+|+..+..-+.. ... .-.++.+.. .+..+-+.|+.+|+.+.+-++.+
T Consensus 93 v~r~sv~~NVl~grl~~~s--~~~---------slfglfsk~---------------dk~~Al~aLervgi~~~A~qra~ 146 (258)
T COG3638 93 VPRLSVLENVLLGRLGYTS--TWR---------SLFGLFSKE---------------DKAQALDALERVGILDKAYQRAS 146 (258)
T ss_pred ccccHHHHHHHhhhcccch--HHH---------HHhCCCCHH---------------HHHHHHHHHHHcCcHHHHHHHhc
Confidence 9999999999987532210 000 011111111 11234457899999999988888
Q ss_pred ccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEE
Q 000517 337 NAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416 (1449)
Q Consensus 337 ~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~l 416 (1449)
+ |||||+|||+|||||+.+|+++|-|||+++|||.++.++++.|++++...|.|+|+.+|| .+-+.++||||+-
T Consensus 147 ~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~-vdlA~~Y~~Riig 220 (258)
T COG3638 147 T-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDLAKKYADRIIG 220 (258)
T ss_pred c-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHHhhheE
Confidence 7 999999999999999999999999999999999999999999999999989999998766 6778899999999
Q ss_pred EeCCeEEEecChhhHHH
Q 000517 417 MAEGKIVYHGPQDHVLA 433 (1449)
Q Consensus 417 L~~G~iv~~G~~~~~~~ 433 (1449)
|++|+|+|+||++++.+
T Consensus 221 l~~G~ivfDg~~~el~~ 237 (258)
T COG3638 221 LKAGRIVFDGPASELTD 237 (258)
T ss_pred ecCCcEEEeCChhhhhH
Confidence 99999999999988754
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=354.60 Aligned_cols=223 Identities=25% Similarity=0.454 Sum_probs=189.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCc---cCCCCC-CCceEEEEcCCCccCC
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY---KLEEFV-PPKTSAYISQNDLHIA 258 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~---~~~~~~-~~~~~~yv~Q~d~~~~ 258 (1449)
...+++|||+.|+.||+++++|||||||||||++|||+..|+ +|+|.+||. +.+... ..|.+|||+|+..+|+
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 346899999999999999999999999999999999999998 999999999 555533 3478999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 259 EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
+|||.+||.|+.+++..... + .+.+.+++++|+.+.|++.++.+.-.
T Consensus 91 HmtVa~NIAFGl~~~~~~p~-----~---------------------------~~~r~rv~elL~lvqL~~la~ryP~Q- 137 (345)
T COG1118 91 HMTVADNIAFGLKVRKERPS-----E---------------------------AEIRARVEELLRLVQLEGLADRYPAQ- 137 (345)
T ss_pred cchHHhhhhhcccccccCCC-----h---------------------------hhHHHHHHHHHHHhcccchhhcCchh-
Confidence 99999999999877621110 0 01233567889999999988887755
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
|||||||||++||||+..|++|+||||+++||...+.++-+.|+++....+.|++. ++|+.+|++++||+|++|+
T Consensus 138 ----LSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvf-VTHD~eea~~ladrvvvl~ 212 (345)
T COG1118 138 ----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVF-VTHDQEEALELADRVVVLN 212 (345)
T ss_pred ----cChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEE-EeCCHHHHHhhcceEEEec
Confidence 99999999999999999999999999999999999999999999987765666555 5688899999999999999
Q ss_pred CCeEEEecChhhHHHHHHhcCCCCCCCCChhhHHHH
Q 000517 419 EGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQE 454 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~e 454 (1449)
+|+|...||++++. ..|...-+..|+-+
T Consensus 213 ~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~ 240 (345)
T COG1118 213 QGRIEQVGPPDEVY--------DHPASRFVARFLGE 240 (345)
T ss_pred CCeeeeeCCHHHHh--------cCCCccceeccccc
Confidence 99999999999984 45555555566544
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=349.82 Aligned_cols=192 Identities=26% Similarity=0.441 Sum_probs=171.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCCccCCCCCHH
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVR 263 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1449)
..+|+|+|++|.+||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++. .+...++||+|++.++|.+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 56999999999999999999999999999999999999998 999999999883 4567899999999999999999
Q ss_pred HHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccC
Q 000517 264 ETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343 (1449)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGl 343 (1449)
||+.|+...++.... | ...+++..|+.+||.+..|..... |
T Consensus 91 ~NV~l~l~~~~~~~~----------e------------------------~~~~a~~~L~~VgL~~~~~~~P~q-----L 131 (248)
T COG1116 91 DNVALGLELRGKSKA----------E------------------------ARERAKELLELVGLAGFEDKYPHQ-----L 131 (248)
T ss_pred hhheehhhccccchH----------h------------------------HHHHHHHHHHHcCCcchhhcCccc-----c
Confidence 999999887652211 1 112457789999999999988876 9
Q ss_pred ChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 344 SGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+..++|+++ ++|+.+|...++|||++|+++
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvll-VTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLL-VTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEE-EeCCHHHHHhhhCEEEEecCC
Confidence 9999999999999999999999999999999999999999999998877777666 567889999999999999994
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=340.84 Aligned_cols=209 Identities=27% Similarity=0.382 Sum_probs=179.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC------CceEEEEcCCCcc
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP------PKTSAYISQNDLH 256 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~ 256 (1449)
.+.||+|||+.|++||+++|+|||||||||||++|.|+++|+ +|+|.++|+++..... ++++|+++|+-.+
T Consensus 20 ~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gAL 96 (263)
T COG1127 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGAL 96 (263)
T ss_pred CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeecccc
Confidence 457999999999999999999999999999999999999998 9999999999866543 4679999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcc-ccccc
Q 000517 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVC-ADTMV 335 (1449)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~-~dt~v 335 (1449)
|..+||+||+.|..+-... +.+++. +..+..-|+..||... +|...
T Consensus 97 FssltV~eNVafplre~~~---------lp~~~i------------------------~~lv~~KL~~VGL~~~~~~~~P 143 (263)
T COG1127 97 FSSLTVFENVAFPLREHTK---------LPESLI------------------------RELVLMKLELVGLRGAAADLYP 143 (263)
T ss_pred ccccchhHhhheehHhhcc---------CCHHHH------------------------HHHHHHHHHhcCCChhhhhhCc
Confidence 9999999999997653321 111111 0112334788899876 77766
Q ss_pred cccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEE
Q 000517 336 GNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415 (1449)
Q Consensus 336 g~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~ 415 (1449)
.+ ||||++||+++|||++.+|+++|+||||+||||.++..+.+.|+++.+..+.|+++. +|+.++++..+|+|+
T Consensus 144 sE-----LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~V-THDl~s~~~i~Drv~ 217 (263)
T COG1127 144 SE-----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMV-THDLDSLLTIADRVA 217 (263)
T ss_pred hh-----hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEE-ECChHHHHhhhceEE
Confidence 65 999999999999999999999999999999999999999999999998877777664 677899999999999
Q ss_pred EEeCCeEEEecChhhHHH
Q 000517 416 LMAEGKIVYHGPQDHVLA 433 (1449)
Q Consensus 416 lL~~G~iv~~G~~~~~~~ 433 (1449)
+|.+|+|+++|+++++.+
T Consensus 218 ~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 218 VLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEeCCEEEEeCCHHHHHh
Confidence 999999999999999864
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=348.02 Aligned_cols=195 Identities=29% Similarity=0.457 Sum_probs=170.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-------CceEEEEcCCCcc
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-------PKTSAYISQNDLH 256 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1449)
.++|+++|+.|++||+++|+|||||||||||++|+|...|+ +|+|.++|.++..... ++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 67999999999999999999999999999999999999998 9999999988876542 3579999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccc-ccc
Q 000517 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCAD-TMV 335 (1449)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~d-t~v 335 (1449)
+|++||+||+.+...+.+.... + .+...+.+++.+||.+..+ +.+
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------~------------------------~~~~~~~l~~~lgl~~~~~~~~p 140 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------R------------------------RKRAAEELLEVLGLEDRLLKKKP 140 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------H------------------------HHHHHHHHHHhcCChhhhccCCc
Confidence 9999999999998776543211 0 1123567899999997666 777
Q ss_pred cccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEE
Q 000517 336 GNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415 (1449)
Q Consensus 336 g~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~ 415 (1449)
.+ |||||||||+|||||+.+|++++.||||.+||+.++..|++.+++++++.++|+|+..|. +++...|||++
T Consensus 141 ~e-----LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd--~~lA~~~dr~i 213 (226)
T COG1136 141 SE-----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD--PELAKYADRVI 213 (226)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC--HHHHHhCCEEE
Confidence 66 999999999999999999999999999999999999999999999998778888887654 57889999999
Q ss_pred EEeCCeE
Q 000517 416 LMAEGKI 422 (1449)
Q Consensus 416 lL~~G~i 422 (1449)
.|.+|++
T Consensus 214 ~l~dG~~ 220 (226)
T COG1136 214 ELKDGKI 220 (226)
T ss_pred EEeCCee
Confidence 9999994
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=374.02 Aligned_cols=208 Identities=28% Similarity=0.427 Sum_probs=186.7
Q ss_pred ccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-ccccceEEEEccCCCCCCC
Q 000517 870 ADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFARVSGYCEQTDIHSPN 948 (1449)
Q Consensus 870 ~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~gyv~Q~d~~~~~ 948 (1449)
.+++..+|+|+|++|++||+++|+|||||||||||++|||...+ .+|+|.++|.++.. ...+|.+|+|+|+..+||+
T Consensus 14 ~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPH 91 (352)
T COG3842 14 SFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGEDITDVPPEKRPIGMVFQSYALFPH 91 (352)
T ss_pred ecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCChhhcccceeecCcccCCC
Confidence 44567899999999999999999999999999999999998776 58999999998754 3457889999999999999
Q ss_pred CCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000517 949 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028 (1449)
Q Consensus 949 lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPT 1028 (1449)
+||.||+.|+.+++. ...+++.+++|+++++.++|++..++.+ .+|||||||||++||||+.+|++|+||||.
T Consensus 92 ltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQqQRVALARAL~~~P~vLLLDEPl 164 (352)
T COG3842 92 MTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQQRVALARALVPEPKVLLLDEPL 164 (352)
T ss_pred CcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHHHHHHHHHHhhcCcchhhhcCcc
Confidence 999999999977443 3345667889999999999999988875 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCC
Q 000517 1029 TGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGK 1088 (1449)
Q Consensus 1029 sgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~ 1088 (1449)
|+||..-+..+..-|+++.+ .|.|.|++|||.. +...+.||+.+|+ +|++...|++.+
T Consensus 165 SaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~-~G~I~Q~gtP~e 223 (352)
T COG3842 165 SALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMN-DGRIEQVGTPEE 223 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEcc-CCceeecCCHHH
Confidence 99999999999999999975 4999999999976 7889999999997 599999999853
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=349.23 Aligned_cols=208 Identities=26% Similarity=0.423 Sum_probs=175.9
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCC--ccCCCCCH
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQND--LHIAEMTV 262 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d--~~~~~lTV 262 (1449)
++|+|||+.+++|++++|+||||||||||+|+|.|+++|. +|+|.++|.+......+..+|||||.. .+-..+||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 4899999999999999999999999999999999999998 999999999887776678999999953 23344899
Q ss_pred HHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccccc
Q 000517 263 RETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG 342 (1449)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 342 (1449)
+|.+..+.--+.. ......++ +...++++|+.+|+.+.+|..+|+
T Consensus 95 ~d~V~~g~~~~~g-----~~~~~~~~-------------------------d~~~v~~aL~~Vgm~~~~~r~i~~----- 139 (254)
T COG1121 95 KDVVLLGRYGKKG-----WFRRLNKK-------------------------DKEKVDEALERVGMEDLRDRQIGE----- 139 (254)
T ss_pred HHHHHccCccccc-----ccccccHH-------------------------HHHHHHHHHHHcCchhhhCCcccc-----
Confidence 9999876321110 01111111 123478899999999999999998
Q ss_pred CChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeE
Q 000517 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422 (1449)
Q Consensus 343 lSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~i 422 (1449)
|||||+|||-|||||+++|++|+|||||+|+|+.++..|++.|+++.++ |+|+++ ++|+...+.++||+|+.|+. ++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~-vtHDL~~v~~~~D~vi~Ln~-~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLM-VTHDLGLVMAYFDRVICLNR-HL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEE-EeCCcHHhHhhCCEEEEEcC-ee
Confidence 9999999999999999999999999999999999999999999999886 777766 57888899999999999965 78
Q ss_pred EEecChhhHHH
Q 000517 423 VYHGPQDHVLA 433 (1449)
Q Consensus 423 v~~G~~~~~~~ 433 (1449)
++.|+++++..
T Consensus 217 ~~~G~~~~~~~ 227 (254)
T COG1121 217 IASGPPEEVLT 227 (254)
T ss_pred EeccChhhccC
Confidence 89999988753
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=368.49 Aligned_cols=214 Identities=28% Similarity=0.416 Sum_probs=185.5
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|++..+ ++..+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~-------------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRY-------------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEE-------------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEec
Confidence 46677766543 235699999999999999999999999999999999998765 589999999875
Q ss_pred cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000517 928 VQ--ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQ 1005 (1449)
Q Consensus 928 ~~--~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1005 (1449)
.. ...++.+|||+|++.+++.+||+||+.|.+.++. ....+..++++++++.++|.+..++.++ +|||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHH
Confidence 43 2356789999999999999999999998766542 2334445678899999999988888865 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecC
Q 000517 1006 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085 (1449)
Q Consensus 1006 rqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~ 1085 (1449)
|||++||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|+ +|++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~-~G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIE-EGRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999986 6778899999998 589999998
Q ss_pred C
Q 000517 1086 L 1086 (1449)
Q Consensus 1086 ~ 1086 (1449)
+
T Consensus 222 ~ 222 (306)
T PRK13537 222 P 222 (306)
T ss_pred H
Confidence 6
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=330.54 Aligned_cols=207 Identities=28% Similarity=0.367 Sum_probs=183.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC--CCceEEEEcCCCccCCCC
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV--PPKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 260 (1449)
..++++||||.++.||+++|+|||||||||+|++|++++.|+ +|+|++||.+..+.. .++.+|.++.+..++..|
T Consensus 14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~Rl 90 (245)
T COG4555 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARL 90 (245)
T ss_pred HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhh
Confidence 345899999999999999999999999999999999999998 999999999875432 368899999888899999
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
|+||||.|.+++.+.. +.+ .+.+++.+.+.|+|.+|.|+.+|+
T Consensus 91 T~rEnl~~Fa~L~~l~----------~~~------------------------~kari~~l~k~l~l~~~~~rRv~~--- 133 (245)
T COG4555 91 TARENLKYFARLNGLS----------RKE------------------------IKARIAELSKRLQLLEYLDRRVGE--- 133 (245)
T ss_pred hHHHHHHHHHHHhhhh----------hhH------------------------HHHHHHHHHHHhChHHHHHHHHhh---
Confidence 9999999999876532 211 123567889999999999999997
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
+|-|+||||+|||||+++|+++++||||||||..+...+.+.++++.. .++++|.+ +|..+|+..+||+|++|++|
T Consensus 134 --~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFS-SH~m~EvealCDrvivlh~G 209 (245)
T COG4555 134 --FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFS-SHIMQEVEALCDRVIVLHKG 209 (245)
T ss_pred --hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEe-cccHHHHHHhhheEEEEecC
Confidence 999999999999999999999999999999999999999999999854 57777776 57799999999999999999
Q ss_pred eEEEecChhhHHH
Q 000517 421 KIVYHGPQDHVLA 433 (1449)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1449)
++++.|+.+++..
T Consensus 210 evv~~gs~~~l~~ 222 (245)
T COG4555 210 EVVLEGSIEALDA 222 (245)
T ss_pred cEEEcCCHHHHHH
Confidence 9999999988764
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=331.11 Aligned_cols=222 Identities=27% Similarity=0.425 Sum_probs=178.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCeeeEEEECCccCCCCC-----CCceEEEEcCCCcc
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD--PSLKVTGEVSYNGYKLEEFV-----PPKTSAYISQNDLH 256 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 256 (1449)
+.+|+|||+.|+++++||++|||||||||||++|....+ |..+++|+|.++|+++-+.. .|+++|+|+|.+..
T Consensus 20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnP 99 (253)
T COG1117 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP 99 (253)
T ss_pred hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCC
Confidence 469999999999999999999999999999999988754 45688999999999985532 37899999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC-ccccccc
Q 000517 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD-VCADTMV 335 (1449)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~v 335 (1449)
|| +|++||+.|+.++.|... +.+.+ .++..|+.-+|- +..|.+=
T Consensus 100 Fp-~SIydNVayG~r~~g~~~--~~lde--------------------------------iVe~sLk~AaLWdEVKDrL~ 144 (253)
T COG1117 100 FP-MSIYDNVAYGLRLHGIKD--KELDE--------------------------------IVESSLKKAALWDEVKDRLH 144 (253)
T ss_pred CC-chHHHHHHHhHHhhccch--HHHHH--------------------------------HHHHHHHHhHhHHHhHHHhh
Confidence 99 999999999999887543 11111 122233333331 2233221
Q ss_pred cccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEE
Q 000517 336 GNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415 (1449)
Q Consensus 336 g~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~ 415 (1449)
.+ ..+|||||+||++|||||+-+|+|||||||||+|||.++..|-+.+.++.+ +-|+|+ ++|...++.+..|+..
T Consensus 145 ~s--a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIvi-VTHnmqQAaRvSD~ta 219 (253)
T COG1117 145 KS--ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVI-VTHNMQQAARVSDYTA 219 (253)
T ss_pred CC--ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEE-EeCCHHHHHHHhHhhh
Confidence 12 346999999999999999999999999999999999999999999999864 456655 4677889999999999
Q ss_pred EEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhhHHH
Q 000517 416 LMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQ 453 (1449)
Q Consensus 416 lL~~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ 453 (1449)
++..|+++++|+.+++ |.-|.++.+.||+.
T Consensus 220 Ff~~G~LvE~g~T~~i--------F~~P~~~~TedYis 249 (253)
T COG1117 220 FFYLGELVEFGPTDKI--------FTNPKHKRTEDYIS 249 (253)
T ss_pred hhcccEEEEEcCHHhh--------hcCccHHHHHHHhc
Confidence 9999999999999988 45677776767653
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=329.16 Aligned_cols=213 Identities=24% Similarity=0.378 Sum_probs=187.9
Q ss_pred ccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccc----cccceEEEEcc
Q 000517 866 ERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQE----TFARVSGYCEQ 941 (1449)
Q Consensus 866 ~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q 941 (1449)
+..+.+++++++++||+.+++||++||+|||||||||.+.++.|...+ .+|+|.+||.+++.. ..|..+||+||
T Consensus 9 ~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLpQ 86 (243)
T COG1137 9 NLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLPQ 86 (243)
T ss_pred hhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCcccccc
Confidence 344567788999999999999999999999999999999999998776 489999999987542 23456899999
Q ss_pred CCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000517 942 TDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSI 1021 (1449)
Q Consensus 942 ~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~i 1021 (1449)
++..|..+||+||+......+.. +....+++++++++|+.+++.|++++... .||||||||+.|||||+.+|+.
T Consensus 87 E~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~EIARaLa~~P~f 160 (243)
T COG1137 87 EASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRVEIARALAANPKF 160 (243)
T ss_pred cchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHHHHHHHHhcCCCE
Confidence 99999999999999877666542 22334566778999999999999998743 6999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCC
Q 000517 1022 IFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGK 1088 (1449)
Q Consensus 1022 llLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~ 1088 (1449)
++||||.+|+||-+...|.+.++.+++.|.-|++|-|... +....+||..++.+ |++...|++++
T Consensus 161 iLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~e 225 (243)
T COG1137 161 ILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPEE 225 (243)
T ss_pred EEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHHH
Confidence 9999999999999999999999999999999999999986 78899999999984 89999999853
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=366.48 Aligned_cols=202 Identities=25% Similarity=0.327 Sum_probs=177.6
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---c---cccceEEEEccCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---E---TFARVSGYCEQTDIHSP 947 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~---~~~~~~gyv~Q~d~~~~ 947 (1449)
..+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.. . ..++.+||++|+..+++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~ 95 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccc
Confidence 4699999999999999999999999999999999998765 58999999987642 1 24668999999999999
Q ss_pred CCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000517 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1027 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEP 1027 (1449)
..||+||+.|..... ..+.++.++++.++++.+||.+..|..++ .|||||||||+|||||+.+|++|+||||
T Consensus 96 ~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~-----~LSgGqkQRV~IARAL~~~P~iLLlDEP 167 (343)
T TIGR02314 96 SRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred cCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 999999999875543 22345566788999999999988887754 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1028 TTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1028 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
||+||+.++..+++.|++++++ |.|||++||+++ .+.+.||++++|+ +|++++.|+..
T Consensus 168 ts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~iv~~g~~~ 226 (343)
T TIGR02314 168 TSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELIEQGTVS 226 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 9999999999999999999865 999999999976 5678899999997 58999999863
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=351.43 Aligned_cols=202 Identities=28% Similarity=0.398 Sum_probs=174.1
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc------ccccceEEEEccCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ------ETFARVSGYCEQTDIHSP 947 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~~~~~~gyv~Q~d~~~~ 947 (1449)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.+||++|++.+++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccChhhHHHHhcceEEEccCcccCC
Confidence 4699999999999999999999999999999999998665 58999999987532 234667999999999999
Q ss_pred CCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000517 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1027 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEP 1027 (1449)
.+||.||+.+...... ....+...+.++++++.++|.+..++.++ .|||||||||+||+||+.+|+||+||||
T Consensus 91 ~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~llllDEP 163 (235)
T cd03261 91 SLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPA-----ELSGGMKKRVALARALALDPELLLYDEP 163 (235)
T ss_pred CCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 9999999988643221 12334445678899999999887777654 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1028 TTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1028 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|. +|++++.|+.
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~-~G~i~~~g~~ 221 (235)
T cd03261 164 TAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLY-DGKIVAEGTP 221 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEE-CCeEEEecCH
Confidence 9999999999999999999764 899999999986 5777899999997 5899999875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=369.26 Aligned_cols=202 Identities=24% Similarity=0.358 Sum_probs=178.9
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-ccccceEEEEccCCCCCCCCCHH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFARVSGYCEQTDIHSPNITVE 952 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~ 952 (1449)
+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.. ...++.+|||+|++.++|++||+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 5699999999999999999999999999999999998765 58999999987643 22346899999999999999999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000517 953 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032 (1449)
Q Consensus 953 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD 1032 (1449)
||+.|+...+ ..+..+..++++++++.++|.+..++.++ .|||||||||+|||||+.+|++|+||||||+||
T Consensus 95 eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD 166 (356)
T PRK11650 95 ENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPR-----ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166 (356)
T ss_pred HHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9999986543 23345556788999999999998888754 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1033 ARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1033 ~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
+.++..+.+.|+++.++ |.|+|++||++. ++...+|++++|. +|+++..|++.
T Consensus 167 ~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g~~~ 220 (356)
T PRK11650 167 AKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIGTPV 220 (356)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEECCHH
Confidence 99999999999999765 999999999986 6889999999997 59999999874
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=367.33 Aligned_cols=214 Identities=25% Similarity=0.402 Sum_probs=185.8
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
++++|++.++ +.+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~~ 69 (353)
T TIGR03265 5 LSIDNIRKRF-------------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDIT 69 (353)
T ss_pred EEEEEEEEEe-------------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CceEEEECCEECC
Confidence 5666766543 235689999999999999999999999999999999998765 5899999998764
Q ss_pred c-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000517 929 Q-ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRK 1007 (1449)
Q Consensus 929 ~-~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1007 (1449)
. ...+|.+|||+|+..++|++||+||+.|+...+ ..+..+.+++++++++.++|.+..++.+ ..|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~Q 141 (353)
T TIGR03265 70 RLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQQ 141 (353)
T ss_pred CCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHHH
Confidence 2 224577999999999999999999999986543 2334556678999999999999888775 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1008 RLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1008 Rl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|+ +|+++..|++
T Consensus 142 RvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~-~G~i~~~g~~ 219 (353)
T TIGR03265 142 RVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMN-HGVIEQVGTP 219 (353)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 999999999999999999999999999999999999998765 899999999986 6888999999998 5899999987
Q ss_pred C
Q 000517 1087 G 1087 (1449)
Q Consensus 1087 ~ 1087 (1449)
.
T Consensus 220 ~ 220 (353)
T TIGR03265 220 Q 220 (353)
T ss_pred H
Confidence 4
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=361.77 Aligned_cols=202 Identities=29% Similarity=0.436 Sum_probs=177.7
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc--ccccceEEEEccCCCCCCCCC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ--ETFARVSGYCEQTDIHSPNIT 950 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~~lT 950 (1449)
++.+|+|+||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 45699999999999999999999999999999999998765 58999999987532 234567999999999999999
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000517 951 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1030 (1449)
Q Consensus 951 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsg 1030 (1449)
|+||+.+.+.++. ......++.++++++.++|.+..++.++ .|||||||||+||+||+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765542 2233445678999999999988888764 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1031 LDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1031 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~-~G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIID-HGRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 9999999999999999877999999999986 6778899999998 5899999986
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=364.55 Aligned_cols=214 Identities=25% Similarity=0.381 Sum_probs=185.3
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|++..+ +++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 41 ~i~i~nl~k~y-------------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSY-------------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEEC
Confidence 46777776544 345699999999999999999999999999999999998765 589999999875
Q ss_pred cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000517 928 VQ--ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQ 1005 (1449)
Q Consensus 928 ~~--~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1005 (1449)
.. ...++.+||++|++.+++.+||+|++.+.+.++. ....+..+.++++++.++|.+..++.++ +|||||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVS-----DLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHH
Confidence 42 2356789999999999999999999987665432 2233445667889999999988888865 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecC
Q 000517 1006 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085 (1449)
Q Consensus 1006 rqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~ 1085 (1449)
|||++||+||+.+|++|||||||+|||+.++..+++.|+++++.|+|||++||+++ ++.+.||++++|. +|++++.|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~-~G~i~~~g~ 255 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLE-AGRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 6778999999998 589999998
Q ss_pred C
Q 000517 1086 L 1086 (1449)
Q Consensus 1086 ~ 1086 (1449)
+
T Consensus 256 ~ 256 (340)
T PRK13536 256 P 256 (340)
T ss_pred H
Confidence 6
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=365.58 Aligned_cols=215 Identities=23% Similarity=0.396 Sum_probs=186.6
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|++..+ ++..+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.+||.++
T Consensus 6 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRF-------------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEE-------------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 46677776543 234689999999999999999999999999999999998765 589999999876
Q ss_pred ccc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000517 928 VQE-TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQR 1006 (1449)
Q Consensus 928 ~~~-~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1006 (1449)
... ..++.+|||+|+..++|++||+||+.|+...+. .+..+.+++++++++.++|.+..++.. ..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 432 235789999999999999999999999865442 334566778999999999998888775 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecC
Q 000517 1007 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085 (1449)
Q Consensus 1007 qRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~ 1085 (1449)
|||+|||||+.+|++|+|||||||||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|+ +|+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~-~G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMN-KGKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999986 6888999999998 589999998
Q ss_pred CC
Q 000517 1086 LG 1087 (1449)
Q Consensus 1086 ~~ 1087 (1449)
+.
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 74
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=363.64 Aligned_cols=206 Identities=23% Similarity=0.347 Sum_probs=178.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC------CceEEEEcCCCccC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP------PKTSAYISQNDLHI 257 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 257 (1449)
.++|+|||+++++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999998 9999999998865432 45799999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGN 337 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 337 (1449)
+.+||+||+.|+....+... .+ ...++.++++.+||.+..|..++.
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------~~------------------------~~~~v~e~l~~vgL~~~~~~~~~~ 140 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------DE------------------------IKRKVTELLALVGLGDKHDSYPSN 140 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhCChhh
Confidence 99999999998765432110 00 012356789999999888888765
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL 417 (1449)
|||||||||+|||||+.+|++|+|||||++||+.++..+++.|+++.+..+.|+|++ +|..+.+.++||+|++|
T Consensus 141 -----LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiili-TH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 141 -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLI-THEMDVVKRICDCVAVI 214 (343)
T ss_pred -----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999987557777765 45677888999999999
Q ss_pred eCCeEEEecChhhHH
Q 000517 418 AEGKIVYHGPQDHVL 432 (1449)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1449)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=364.63 Aligned_cols=205 Identities=24% Similarity=0.440 Sum_probs=179.0
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-CceEEEEcCCCccCCCCCHH
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTVR 263 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 263 (1449)
.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..+||++||+
T Consensus 18 ~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (353)
T TIGR03265 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVA 94 (353)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHH
Confidence 4899999999999999999999999999999999999998 9999999998865433 46799999999999999999
Q ss_pred HHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccC
Q 000517 264 ETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343 (1449)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGl 343 (1449)
||+.|+.+.++.. +.+ .+..++++++.+||++..|+.+.+ |
T Consensus 95 eNi~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~l~L~~~~~~~~~~-----L 135 (353)
T TIGR03265 95 DNIAYGLKNRGMG----------RAE------------------------VAERVAELLDLVGLPGSERKYPGQ-----L 135 (353)
T ss_pred HHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCCCchhhCChhh-----C
Confidence 9999987543211 000 112357789999999988888765 9
Q ss_pred ChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEE
Q 000517 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423 (1449)
Q Consensus 344 SGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv 423 (1449)
||||||||+|||||+.+|+++|||||+++||..++.++.+.|+++.+..+.|+|++. |...++..++|+|++|++|+++
T Consensus 136 SgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vT-Hd~~ea~~l~d~i~vl~~G~i~ 214 (353)
T TIGR03265 136 SGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVT-HDQEEALSMADRIVVMNHGVIE 214 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEc-CCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998776567776654 5667999999999999999999
Q ss_pred EecChhhHH
Q 000517 424 YHGPQDHVL 432 (1449)
Q Consensus 424 ~~G~~~~~~ 432 (1449)
..|+++++.
T Consensus 215 ~~g~~~~~~ 223 (353)
T TIGR03265 215 QVGTPQEIY 223 (353)
T ss_pred EEcCHHHHH
Confidence 999998885
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=314.36 Aligned_cols=201 Identities=23% Similarity=0.425 Sum_probs=177.3
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-CceEEEEcCCCccCCCCCHHHHHH
Q 000517 189 HVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTVRETVD 267 (1449)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1449)
..++.|++||+++|+||||||||||||+|+|...|. +|+|.+||.+.....| +|-++.++|+..+|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 478889999999999999999999999999999998 9999999999887665 577999999999999999999998
Q ss_pred HHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCChhh
Q 000517 268 FSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQ 347 (1449)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlSGGq 347 (1449)
++.. ++-+ +... ....++.++...||..+.+.+.+. |||||
T Consensus 94 LGl~---P~Lk------L~a~-------------------------~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGq 134 (231)
T COG3840 94 LGLS---PGLK------LNAE-------------------------QREKVEAAAAQVGLAGFLKRLPGE-----LSGGQ 134 (231)
T ss_pred ccCC---cccc------cCHH-------------------------HHHHHHHHHHHhChhhHhhhCccc-----cCchH
Confidence 8642 1111 1111 123467789999999999999887 99999
Q ss_pred hhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEEEecC
Q 000517 348 KKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGP 427 (1449)
Q Consensus 348 rkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv~~G~ 427 (1449)
||||++||+|+++.+||+||||+|+|||.-+.+....+.+++.+.+.|+++..||| +++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeecc
Confidence 99999999999999999999999999999999999999999998888998887776 57889999999999999999999
Q ss_pred hhhHH
Q 000517 428 QDHVL 432 (1449)
Q Consensus 428 ~~~~~ 432 (1449)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 88765
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=365.87 Aligned_cols=215 Identities=26% Similarity=0.372 Sum_probs=186.0
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeE--EEEEEcCc
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVE--GEIKISGY 925 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~--G~I~i~G~ 925 (1449)
.++++|+++++ ++..+|+|+|++|++||+++|+|||||||||||++|+|...+ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAY-------------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEE-------------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 35667776544 234699999999999999999999999999999999998765 47 99999998
Q ss_pred cCcc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000517 926 PKVQ-ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTE 1004 (1449)
Q Consensus 926 ~~~~-~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1004 (1449)
+... ...++.+|||+|+..++|.+||+||+.|+...+ ..+..+.+++++++++.++|.+..++.++ .||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~-----~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPA-----QLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChh-----hCCHH
Confidence 7532 223567999999999999999999999986543 23445566789999999999998888754 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEEecCccHHHHHhcCeEEEEecCcEEEE
Q 000517 1005 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT--GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIY 1082 (1449)
Q Consensus 1005 qrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~ 1082 (1449)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|+ +|+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~-~G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMK-DGRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 999999999999999999999999999999999999999999876 799999999986 6788999999998 589999
Q ss_pred ecCCC
Q 000517 1083 CGPLG 1087 (1449)
Q Consensus 1083 ~G~~~ 1087 (1449)
.|++.
T Consensus 220 ~g~~~ 224 (362)
T TIGR03258 220 HGEPQ 224 (362)
T ss_pred EcCHH
Confidence 99874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=362.62 Aligned_cols=206 Identities=26% Similarity=0.439 Sum_probs=179.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-CceEEEEcCCCccCCCCCH
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTV 262 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1449)
..+|+|+|+.+++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|+..++|++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 35899999999999999999999999999999999999998 9999999998876544 4789999999999999999
Q ss_pred HHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccccc
Q 000517 263 RETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG 342 (1449)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 342 (1449)
+||+.|+.+.++... .+ .+..++++++.+||.+..|..+.+
T Consensus 96 ~eNi~~~l~~~~~~~----------~~------------------------~~~~v~~~l~~~gl~~~~~r~~~~----- 136 (351)
T PRK11432 96 GENVGYGLKMLGVPK----------EE------------------------RKQRVKEALELVDLAGFEDRYVDQ----- 136 (351)
T ss_pred HHHHHHHHhHcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhcCChhh-----
Confidence 999999876443211 00 012357789999999888887765
Q ss_pred CChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeE
Q 000517 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422 (1449)
Q Consensus 343 lSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~i 422 (1449)
|||||||||+|||||+.+|++|+||||+++||+.++.++.+.|+++.+..+.|+|++ +|...++.+++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v-THd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYV-THDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-cCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999977556776665 5667889999999999999999
Q ss_pred EEecChhhHH
Q 000517 423 VYHGPQDHVL 432 (1449)
Q Consensus 423 v~~G~~~~~~ 432 (1449)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=314.57 Aligned_cols=196 Identities=28% Similarity=0.403 Sum_probs=172.5
Q ss_pred cceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-ccccceEEEEccCCCCCCCCCHHHHHHH
Q 000517 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFARVSGYCEQTDIHSPNITVEESVIF 957 (1449)
Q Consensus 879 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~e~l~f 957 (1449)
..++.|.+||++||+||||||||||||+|+|...| .+|+|.|||.+... ....|-++.++|+..+|..+||++|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 46788999999999999999999999999998876 48999999988543 3455678999999999999999999987
Q ss_pred HHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000517 958 SAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 1037 (1449)
Q Consensus 958 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~ 1037 (1449)
+..-.+ .. ....++.++.++..+||..+.+++.+ +|||||||||++||+|+++-+||+||||.|.||+.-+.
T Consensus 95 Gl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 643211 11 24556789999999999999998855 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1038 IVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1038 ~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
++..++.++++ ++.|++++||+|+ +.....|++++++ +|||.+.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~-~Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLD-NGRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEe-CCEEEeeccH
Confidence 99999999975 4899999999997 7889999999998 5899999986
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=341.53 Aligned_cols=199 Identities=30% Similarity=0.455 Sum_probs=170.5
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-ccccceEEEEccCCCCCCCCCHH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFARVSGYCEQTDIHSPNITVE 952 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~ 952 (1449)
+.+|+|+||++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+|++
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 4699999999999999999999999999999999998654 58999999987532 22346799999999888899999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000517 953 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032 (1449)
Q Consensus 953 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD 1032 (1449)
||+.+...... ......++.++++++.++|.+..++.++ .||||||||++||++|+.+|++|+|||||+|||
T Consensus 91 ~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD 162 (213)
T cd03259 91 ENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRYPH-----ELSGGQQQRVALARALAREPSLLLLDEPLSALD 162 (213)
T ss_pred HHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99988654321 2233445678899999999887777654 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1033 ARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1033 ~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
+.++..+++.|+++++ .|+|||+++|+++ ++.+.+|++++|. +|++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~G~i~~~g 213 (213)
T cd03259 163 AKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMN-EGRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 9999999999999976 4899999999986 5678899999998 58888765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=341.20 Aligned_cols=200 Identities=28% Similarity=0.426 Sum_probs=173.1
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCCCCCCHHH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEE 953 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~e 953 (1449)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.. ..++.++|++|++.+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVT--GPGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECc--cccCcEEEEecccccccCCCHHH
Confidence 4699999999999999999999999999999999998654 5899999998754 24567999999998888899999
Q ss_pred HHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000517 954 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 1033 (1449)
Q Consensus 954 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~ 1033 (1449)
|+.+....+. ...+...+.++++++.++|.+..++.++ .||||||||++||+||+.+|++|+|||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAYPH-----QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9988754432 2233445678899999999887777653 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEec-CcEEEEecCC
Q 000517 1034 RAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKT-GGRIIYCGPL 1086 (1449)
Q Consensus 1034 ~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~-gG~~v~~G~~ 1086 (1449)
.++..+++.|+++.+ .|+|||+++|+++ ++...+|++++|.+ +|+++..++.
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999865 4899999999986 46788999999985 5899988875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=355.79 Aligned_cols=206 Identities=27% Similarity=0.373 Sum_probs=177.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC--CCceEEEEcCCCccCCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV--PPKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1449)
..+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 35999999999999999999999999999999999999998 999999999875432 2467999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|+||+.|.++..+.... + ....++.+++.+||.+..++.+++
T Consensus 97 v~e~l~~~~~~~~~~~~----------~------------------------~~~~~~~~l~~~~l~~~~~~~~~~---- 138 (306)
T PRK13537 97 VRENLLVFGRYFGLSAA----------A------------------------ARALVPPLLEFAKLENKADAKVGE---- 138 (306)
T ss_pred HHHHHHHHHHHcCCCHH----------H------------------------HHHHHHHHHHHcCCchHhcCchhh----
Confidence 99999987665432110 0 011246688999999989998875
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
|||||||||+||+||+++|++|+|||||+|||+.++..+.+.|+++.+ .+.|++++ +|..+++.++||+|++|++|+
T Consensus 139 -LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~-sH~l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 139 -LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLT-THFMEEAERLCDRLCVIEEGR 215 (306)
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999865 46777766 455778999999999999999
Q ss_pred EEEecChhhHHH
Q 000517 422 IVYHGPQDHVLA 433 (1449)
Q Consensus 422 iv~~G~~~~~~~ 433 (1449)
+++.|+++++.+
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999998864
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=341.04 Aligned_cols=195 Identities=25% Similarity=0.361 Sum_probs=167.5
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc------ccccceEEEEccCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ------ETFARVSGYCEQTDIHSP 947 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~~~~~~gyv~Q~d~~~~ 947 (1449)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++.+++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 3599999999999999999999999999999999998654 58999999987532 124567999999999999
Q ss_pred CCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000517 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1027 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEP 1027 (1449)
.+||.||+.+....+. .......+.++++++.++|.+..++.++ .||||||||++|||||+.+|++|+||||
T Consensus 94 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP 165 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALPM-----QLSGGEQQRVAIARAIVHKPPLLLADEP 165 (216)
T ss_pred cccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999988754331 2233445678899999999887777654 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEE
Q 000517 1028 TTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080 (1449)
Q Consensus 1028 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~ 1080 (1449)
|+|||+.++..+.+.|++++++|+|||++||+++ .+...+|++++|.+ |++
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i 216 (216)
T TIGR00960 166 TGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GRL 216 (216)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CcC
Confidence 9999999999999999999777999999999986 46678999999974 653
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=363.20 Aligned_cols=217 Identities=25% Similarity=0.400 Sum_probs=184.2
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-CceEEEEcCCCccCCCCCHH
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTVR 263 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 263 (1449)
++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|++.++|++||+
T Consensus 28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 104 (375)
T PRK09452 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVF 104 (375)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHH
Confidence 5899999999999999999999999999999999999997 9999999998865433 46799999999999999999
Q ss_pred HHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccC
Q 000517 264 ETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343 (1449)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGl 343 (1449)
||+.|+.+.++... .+ .+..++++++.+||++..|+.+.. |
T Consensus 105 eNi~~~l~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~p~~-----L 145 (375)
T PRK09452 105 ENVAFGLRMQKTPA----------AE------------------------ITPRVMEALRMVQLEEFAQRKPHQ-----L 145 (375)
T ss_pred HHHHHHHhhcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhCChhh-----C
Confidence 99999865432110 00 012356789999999888888765 9
Q ss_pred ChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEE
Q 000517 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423 (1449)
Q Consensus 344 SGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv 423 (1449)
||||||||+|||||+.+|++||||||+++||..++.++.+.|+++.+..+.|+|++ +|...++..++|+|++|++|+++
T Consensus 146 SgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~v-THd~~ea~~laDri~vl~~G~i~ 224 (375)
T PRK09452 146 SGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFV-THDQEEALTMSDRIVVMRDGRIE 224 (375)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999987656676664 56678899999999999999999
Q ss_pred EecChhhHHHHHHhcCCCCCCCCChhhHH
Q 000517 424 YHGPQDHVLAFFEDCGFRCPERKGVSDFL 452 (1449)
Q Consensus 424 ~~G~~~~~~~~F~~~Gf~~p~~~~~adfl 452 (1449)
..|+++++. ..|...-+++|+
T Consensus 225 ~~g~~~~i~--------~~p~~~~~a~~~ 245 (375)
T PRK09452 225 QDGTPREIY--------EEPKNLFVARFI 245 (375)
T ss_pred EEcCHHHHH--------hCcccHHHHHhc
Confidence 999998874 345444445554
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=364.12 Aligned_cols=206 Identities=27% Similarity=0.407 Sum_probs=178.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-CceEEEEcCCCccCCCCCH
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTV 262 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1449)
+.+|+|+|+.+++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++....+ ++.++||+|++.++|++||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 35899999999999999999999999999999999999997 9999999998865433 4689999999999999999
Q ss_pred HHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccccc
Q 000517 263 RETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG 342 (1449)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 342 (1449)
+||+.|+.+.++.. +.+ .+..++++++.+||++..|+.+++
T Consensus 94 ~eNi~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~----- 134 (356)
T PRK11650 94 RENMAYGLKIRGMP----------KAE------------------------IEERVAEAARILELEPLLDRKPRE----- 134 (356)
T ss_pred HHHHHhHHhhcCCC----------HHH------------------------HHHHHHHHHHHcCChhHhhCChhh-----
Confidence 99999987543211 000 012356789999999888888765
Q ss_pred CChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeE
Q 000517 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422 (1449)
Q Consensus 343 lSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~i 422 (1449)
|||||||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+..+.|+|++ +|...++..++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v-THd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYV-THDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999999877556676665 4566789999999999999999
Q ss_pred EEecChhhHH
Q 000517 423 VYHGPQDHVL 432 (1449)
Q Consensus 423 v~~G~~~~~~ 432 (1449)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999998874
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=363.36 Aligned_cols=205 Identities=26% Similarity=0.396 Sum_probs=178.3
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-ccccceEEEEccCCCCCCCCCHH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFARVSGYCEQTDIHSPNITVE 952 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~ 952 (1449)
+.+|+|+|++|++||+++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.+|||+|++.++|.+||+
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~ 92 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVF 92 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHH
Confidence 4699999999999999999999999999999999998665 58999999987643 22346799999999999999999
Q ss_pred HHHHHHHHhccC-CCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000517 953 ESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031 (1449)
Q Consensus 953 e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgL 1031 (1449)
||+.|....+.. ...+.++.+++++++++.++|.+..++.+. .|||||||||+|||||+.+|++|+|||||+||
T Consensus 93 eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGq~QRvalArAL~~~P~llLLDEP~s~L 167 (353)
T PRK10851 93 DNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA-----QLSGGQKQRVALARALAVEPQILLLDEPFGAL 167 (353)
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 999997653211 122344556788999999999988887754 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1032 DARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1032 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
|+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|+ +|++++.|++.
T Consensus 168 D~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~-~G~i~~~g~~~ 222 (353)
T PRK10851 168 DAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMS-QGNIEQAGTPD 222 (353)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 999999999999999765 899999999986 6788999999998 58999999864
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=330.17 Aligned_cols=199 Identities=26% Similarity=0.393 Sum_probs=169.5
Q ss_pred eeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccc----cccceEEEEccCCC--CCCC
Q 000517 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQE----TFARVSGYCEQTDI--HSPN 948 (1449)
Q Consensus 875 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q~d~--~~~~ 948 (1449)
++|+|||++|++||++||+|+||||||||.++|+|...+ .+|+|.++|.+.... .+.+.+-+|+||+. +.|.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 599999999999999999999999999999999998765 589999999775432 46778999999984 6689
Q ss_pred CCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000517 949 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1027 (1449)
Q Consensus 949 lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEP 1027 (1449)
.||++.|.-..... ..++ ..+++.++++.+||.+- ++.. +.+||||||||++|||||+.+|++|+||||
T Consensus 99 ~tv~~~l~Epl~~~---~~~~--~~~~i~~~L~~VgL~~~~l~R~-----P~eLSGGQ~QRiaIARAL~~~PklLIlDEp 168 (252)
T COG1124 99 RTVGRILSEPLRPH---GLSK--SQQRIAELLDQVGLPPSFLDRR-----PHELSGGQRQRIAIARALIPEPKLLILDEP 168 (252)
T ss_pred hhHHHHHhhhhccC---CccH--HHHHHHHHHHHcCCCHHHHhcC-----chhcChhHHHHHHHHHHhccCCCEEEecCc
Confidence 99999887654331 2222 23348999999999763 3443 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1028 TTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1028 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
||+||+..+..|+++|.++.++ |.|.|+++||.+ -+...|||+++|. .|++++.+|.+
T Consensus 169 tSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~-~G~ivE~~~~~ 227 (252)
T COG1124 169 TSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMD-NGQIVEIGPTE 227 (252)
T ss_pred hhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeee-CCeEEEeechh
Confidence 9999999999999999999754 889999999987 4788899999998 58999999974
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=360.74 Aligned_cols=204 Identities=23% Similarity=0.324 Sum_probs=179.3
Q ss_pred ccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---ccc----cceEEEEccCCC
Q 000517 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETF----ARVSGYCEQTDI 944 (1449)
Q Consensus 872 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~----~~~~gyv~Q~d~ 944 (1449)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.. ..+ ++.+|||+|+..
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 446699999999999999999999999999999999998765 58999999987643 222 568999999999
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000517 945 HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 1024 (1449)
Q Consensus 945 ~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illL 1024 (1449)
++|++||+||+.|...+. ....++..+++.++++.+||.+..++.++ .|||||||||+|||||+.+|+||+|
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876543 23445566789999999999888887754 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
||||++||+.++..+++.++++.+. |+|||++||+++ ++...+|++++|. +|+++..|+++
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~-~G~iv~~g~~~ 215 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMK-AGEIVQVGTPD 215 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEeeCCHH
Confidence 9999999999999999999999754 899999999986 5778899999997 58999999864
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=341.68 Aligned_cols=202 Identities=29% Similarity=0.392 Sum_probs=174.2
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc--ccccceEEEEccCCCCCCCCC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ--ETFARVSGYCEQTDIHSPNIT 950 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~~lT 950 (1449)
++.+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 34699999999999999999999999999999999998654 58999999976432 234567999999999999999
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000517 951 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1030 (1449)
Q Consensus 951 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsg 1030 (1449)
|+|++.+....+. ...++.++.++++++.++|.+..++.++ .||||||||++||+||+.+|++|+|||||+|
T Consensus 90 v~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~la~al~~~p~llllDEPt~~ 161 (220)
T cd03265 90 GWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLVK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIG 161 (220)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 9999988754432 2233445678999999999887777754 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1031 LDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1031 LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|. +|+++..|+.
T Consensus 162 LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 216 (220)
T cd03265 162 LDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIID-HGRIIAEGTP 216 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEeCCh
Confidence 9999999999999999876 899999999986 5777899999997 5899998875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=357.24 Aligned_cols=214 Identities=26% Similarity=0.386 Sum_probs=182.0
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|+++.+ ++..+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSY-------------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEe-------------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 35667766543 234699999999999999999999999999999999998655 589999999875
Q ss_pred cc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000517 928 VQ--ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQ 1005 (1449)
Q Consensus 928 ~~--~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1005 (1449)
.. ...++.+||++|++.+++.+||+||+.+.+.... .......+.++++++.++|.+..++.++ .|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHH
Confidence 32 2346779999999999999999999987554321 2233444567889999999988887764 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecC
Q 000517 1006 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085 (1449)
Q Consensus 1006 rqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~ 1085 (1449)
|||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLE-SGRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 5778899999997 589999998
Q ss_pred C
Q 000517 1086 L 1086 (1449)
Q Consensus 1086 ~ 1086 (1449)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 6
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=361.24 Aligned_cols=205 Identities=24% Similarity=0.396 Sum_probs=178.2
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCee--eEEEECCccCCCCCC-CceEEEEcCCCccCCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVT--GEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~--G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 261 (1449)
.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ + |+|.++|+++....+ ++.++||+|+..++|++|
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~t 95 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLK 95 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCc
Confidence 5899999999999999999999999999999999999997 8 999999998865433 467999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|+||+.|+.+..+... .+ .+..++++++.+||++..|+.+++
T Consensus 96 v~enl~~~l~~~~~~~----------~~------------------------~~~~v~~~l~~~gL~~~~~~~~~~---- 137 (362)
T TIGR03258 96 VEDNVAFGLRAQKMPK----------AD------------------------IAERVADALKLVGLGDAAAHLPAQ---- 137 (362)
T ss_pred HHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHhcCCCchhhCChhh----
Confidence 9999999875432110 00 012357789999999989888876
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHIT-DSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~-~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+.. +.|+|++ +|...++..++|+|++|++|
T Consensus 138 -LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~v-THd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 138 -LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCV-THDQDDALTLADKAGIMKDG 215 (362)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEE-eCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999987654 5566554 56678899999999999999
Q ss_pred eEEEecChhhHH
Q 000517 421 KIVYHGPQDHVL 432 (1449)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1449)
+++..|+++++.
T Consensus 216 ~i~~~g~~~~~~ 227 (362)
T TIGR03258 216 RLAAHGEPQALY 227 (362)
T ss_pred EEEEEcCHHHHH
Confidence 999999999884
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=372.34 Aligned_cols=216 Identities=23% Similarity=0.449 Sum_probs=178.7
Q ss_pred cCccccccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEc
Q 000517 175 SGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYIS 251 (1449)
Q Consensus 175 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~ 251 (1449)
+.||.+ .+.+||+|+|++|+|||.+||+||||+||||+.++|..+++|+ +|+|++||+|+.+.++ ++.+|+|.
T Consensus 473 FaYP~R-p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~ 548 (716)
T KOG0058|consen 473 FAYPTR-PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVG 548 (716)
T ss_pred eecCCC-CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeee
Confidence 344544 3467999999999999999999999999999999999999998 9999999999998876 57899999
Q ss_pred CCCccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccc
Q 000517 252 QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCA 331 (1449)
Q Consensus 252 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 331 (1449)
|+|.+|. -||+|||.|+.. +.+.|+.+.++..+. ..+.+ .++++..
T Consensus 549 QEPvLFs-~sI~eNI~YG~~-------------------------~~t~e~i~~AAk~AN-----ah~FI---~~~p~gY 594 (716)
T KOG0058|consen 549 QEPVLFS-GSIRENIAYGLD-------------------------NATDEEIEAAAKMAN-----AHEFI---TNFPDGY 594 (716)
T ss_pred ccceeec-ccHHHHHhcCCC-------------------------CCCHHHHHHHHHHhC-----hHHHH---HhCcccc
Confidence 9999886 699999999753 112222222222211 12333 3489999
Q ss_pred cccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhc
Q 000517 332 DTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLF 411 (1449)
Q Consensus 332 dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~f 411 (1449)
||.||+... .||||||||++|||||+++|+||+|||.||+||+.+...+.+.|.++.+ ++|+++..| +-.+.+.+
T Consensus 595 ~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAH--RLSTV~~A 669 (716)
T KOG0058|consen 595 NTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAH--RLSTVRHA 669 (716)
T ss_pred ccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEeh--hhhHhhhc
Confidence 999997422 3999999999999999999999999999999999999999999998865 477776543 45688999
Q ss_pred CeEEEEeCCeEEEecChhhHHH
Q 000517 412 DDIILMAEGKIVYHGPQDHVLA 433 (1449)
Q Consensus 412 D~v~lL~~G~iv~~G~~~~~~~ 433 (1449)
|+|+++++|++++.|+++|+++
T Consensus 670 d~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 670 DQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred cEEEEEcCCeEEecccHHHHhh
Confidence 9999999999999999999975
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=338.67 Aligned_cols=198 Identities=25% Similarity=0.439 Sum_probs=171.3
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCCCCCCHHH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEE 953 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~e 953 (1449)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..++.++|++|++.+++.+|++|
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHH
Confidence 4699999999999999999999999999999999997654 58999999987543 34567999999999889999999
Q ss_pred HHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000517 954 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 1033 (1449)
Q Consensus 954 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~ 1033 (1449)
|+.+....+. .......+.++++++.++|.+..++.++ .||||||||++||++|+.+|++++|||||+|||+
T Consensus 90 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~ 161 (210)
T cd03269 90 QLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRVE-----ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP 161 (210)
T ss_pred HHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcHh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 9988654432 2233445678899999999887776643 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1034 RAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1034 ~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|. +|++++.|
T Consensus 162 ~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~ 210 (210)
T cd03269 162 VNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLN-KGRAVLYG 210 (210)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEe-CCEEEecC
Confidence 9999999999999877899999999986 4667899999997 58988754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=360.04 Aligned_cols=207 Identities=22% Similarity=0.351 Sum_probs=180.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-------CceEEEEcCCCcc
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-------PKTSAYISQNDLH 256 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1449)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|++.+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 45899999999999999999999999999999999999998 9999999998876543 5689999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccc
Q 000517 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVG 336 (1449)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 336 (1449)
++++||+||+.|+....+... ++ ....+.++++.+||++..++.++
T Consensus 83 ~~~~TV~eNi~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~vgL~~~~~~~p~ 128 (363)
T TIGR01186 83 FPHMTILQNTSLGPELLGWPE----------QE------------------------RKEKALELLKLVGLEEYEHRYPD 128 (363)
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHhcCCchhhhCChh
Confidence 999999999999876543211 00 01235678999999988888887
Q ss_pred ccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEE
Q 000517 337 NAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416 (1449)
Q Consensus 337 ~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~l 416 (1449)
+ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.++++.+..++|+|++ +|...++..++|+|++
T Consensus 129 ~-----LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~v-THd~~ea~~~~drI~v 202 (363)
T TIGR01186 129 E-----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFI-THDLDEAIRIGDRIVI 202 (363)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEE
Confidence 6 999999999999999999999999999999999999999999999876557777665 5667889999999999
Q ss_pred EeCCeEEEecChhhHHH
Q 000517 417 MAEGKIVYHGPQDHVLA 433 (1449)
Q Consensus 417 L~~G~iv~~G~~~~~~~ 433 (1449)
|++|+++..|+++++..
T Consensus 203 l~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 203 MKAGEIVQVGTPDEILR 219 (363)
T ss_pred EeCCEEEeeCCHHHHHh
Confidence 99999999999988753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=362.87 Aligned_cols=214 Identities=24% Similarity=0.354 Sum_probs=185.4
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
++++|+++++. ++.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 15 L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i~ 79 (375)
T PRK09452 15 VELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDIT 79 (375)
T ss_pred EEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 66777776542 34689999999999999999999999999999999998765 5899999998754
Q ss_pred c-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000517 929 Q-ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRK 1007 (1449)
Q Consensus 929 ~-~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1007 (1449)
. ...++.+|||+|++.++|.+||.||+.|+...+. .+..+.++.++++++.++|.+..++.+. .|||||||
T Consensus 80 ~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~p~-----~LSgGq~Q 151 (375)
T PRK09452 80 HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK---TPAAEITPRVMEALRMVQLEEFAQRKPH-----QLSGGQQQ 151 (375)
T ss_pred CCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHH
Confidence 2 2235679999999999999999999999865432 2344556678999999999998888754 79999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1008 RLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1008 Rl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
||+|||||+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++||++. ++...+|++++|. +|+++..|++
T Consensus 152 RVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~-~G~i~~~g~~ 229 (375)
T PRK09452 152 RVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMR-DGRIEQDGTP 229 (375)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 999999999999999999999999999999999999999764 999999999986 6888999999998 5999999986
Q ss_pred C
Q 000517 1087 G 1087 (1449)
Q Consensus 1087 ~ 1087 (1449)
.
T Consensus 230 ~ 230 (375)
T PRK09452 230 R 230 (375)
T ss_pred H
Confidence 4
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=339.02 Aligned_cols=214 Identities=28% Similarity=0.397 Sum_probs=186.5
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|++|+++. + ..+|+|+|+.|++||.++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 4 i~~~~l~~~y~~-----------~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYPG-----------R-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcCC-----------C-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeecc
Confidence 567777776532 1 4799999999999999999999999999999999998765 4799999998754
Q ss_pred ----cccccceEEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000517 929 ----QETFARVSGYCEQTDI-HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLST 1003 (1449)
Q Consensus 929 ----~~~~~~~~gyv~Q~d~-~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1003 (1449)
...+++.+|||+|++. .+..-||.|.+.|+.... ..+.++.+++++++++.+||.+.++... ..|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPP-----FNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCc-----cccCC
Confidence 3467889999999974 345779999999986543 3455678899999999999999988774 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEE
Q 000517 1004 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIY 1082 (1449)
Q Consensus 1004 GqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~ 1082 (1449)
||||||+||.+|+.+|++|+|||||||||+.++..+++.++++.++ |+|||++|||.. .+...+|++++|+ +|++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~-~G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLD-DGKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEE-CCEEee
Confidence 9999999999999999999999999999999999999999999877 789999999986 5778899999998 589999
Q ss_pred ecCC
Q 000517 1083 CGPL 1086 (1449)
Q Consensus 1083 ~G~~ 1086 (1449)
.|++
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9985
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=359.60 Aligned_cols=215 Identities=24% Similarity=0.370 Sum_probs=185.5
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++++|++..+ ++..+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 19 ~l~l~~v~~~~-------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSF-------------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 46677776543 234689999999999999999999999999999999998765 489999999875
Q ss_pred cc-ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000517 928 VQ-ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQR 1006 (1449)
Q Consensus 928 ~~-~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1006 (1449)
.. ...++.+|||+|++.++|++||.||+.|+...+. .+..+.+++++++++.++|.+..++.+. +||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~~~-----~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK---LPKAEIASRVNEMLGLVHMQEFAKRKPH-----QLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHH
Confidence 32 2346789999999999999999999999765432 2345566788999999999988887754 7999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecC
Q 000517 1007 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085 (1449)
Q Consensus 1007 qRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~ 1085 (1449)
|||+|||||+.+|++|+|||||++||..++..+.+.|+++.+ .|.|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~-~G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMN-RGKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEe-CCEEEEEcC
Confidence 999999999999999999999999999999999999999865 4899999999986 6889999999998 589999998
Q ss_pred CC
Q 000517 1086 LG 1087 (1449)
Q Consensus 1086 ~~ 1087 (1449)
+.
T Consensus 234 ~~ 235 (377)
T PRK11607 234 PE 235 (377)
T ss_pred HH
Confidence 74
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=343.47 Aligned_cols=204 Identities=29% Similarity=0.421 Sum_probs=173.3
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccc---c-ccceEEEEccCCCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQE---T-FARVSGYCEQTDIHSPNI 949 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~---~-~~~~~gyv~Q~d~~~~~l 949 (1449)
+.+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+.... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 4699999999999999999999999999999999998654 589999999875421 1 235689999999999999
Q ss_pred CHHHHHHHHHHhccCCC-------CChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000517 950 TVEESVIFSAWLRLAPE-------INSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 1022 (1449)
Q Consensus 950 Tv~e~l~f~~~lr~~~~-------~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~il 1022 (1449)
||+||+.+....+.... .......+.++++++.+||.+..++.++ .||||||||++||++|+.+|++|
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~ll 165 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG-----ELSYGQQRRLEIARALATDPKLL 165 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChh-----hCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988754322110 0123345678899999999887777653 79999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1023 FMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1023 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
+|||||+|||+.++..+++.|+++++.|+|||++||+++ ++.+.+|++++|. +|++++.|+.
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 227 (236)
T cd03219 166 LLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLD-QGRVIAEGTP 227 (236)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEeecCH
Confidence 999999999999999999999999877999999999986 5678899999997 5899998875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=337.14 Aligned_cols=199 Identities=27% Similarity=0.400 Sum_probs=170.9
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccc-cccceEEEEccCCCCCCCCCHH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQE-TFARVSGYCEQTDIHSPNITVE 952 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~-~~~~~~gyv~Q~d~~~~~lTv~ 952 (1449)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.... ..++.++|++|++.+++..|++
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 4699999999999999999999999999999999998654 589999999875321 2345799999999888899999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000517 953 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032 (1449)
Q Consensus 953 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD 1032 (1449)
||+.+....+. ....+.++.++++++.++|.+..+..++ .||||||||++||++|+.+|++++|||||+|||
T Consensus 91 ~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~laral~~~p~llllDEPt~~LD 162 (213)
T cd03301 91 DNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162 (213)
T ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99988654321 2234445678899999999887777754 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1033 ARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1033 ~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
+.++..+++.|++++++ |+|||+++|++. ++...+|++++|. +|++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~g~~~~~g 213 (213)
T cd03301 163 AKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMN-DGQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEE-CCEEEecC
Confidence 99999999999999864 899999999986 5677899999997 58998876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=337.56 Aligned_cols=205 Identities=36% Similarity=0.681 Sum_probs=172.8
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCC-CeeEEEEEEcCccCccccccceEEEEccCCCCCCCCCHH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTS-GYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVE 952 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~-~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~ 952 (1449)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|.+......++.++|++|++.+++.+||+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 5699999999999999999999999999999999997651 125899999998765445677899999999999999999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHH-HHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000517 953 ESVIFSAWLRLAPEINSKTKAEFVNE-VLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031 (1449)
Q Consensus 953 e~l~f~~~lr~~~~~~~~~~~~~v~~-~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgL 1031 (1449)
||+.+..................+++ .++.+++.+..++.+ +.||||||||++|||+|+.+|++|+|||||+||
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~illlDEP~~gL 174 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCC
Confidence 99998765433221122223334555 899999987777654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1032 DARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1032 D~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
|+.++..+.+.|+++.+.|.|+|+++|++..++.+.+|++++|. +|++++.|
T Consensus 175 D~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~-~G~i~~~g 226 (226)
T cd03234 175 DSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLS-SGEIVYSG 226 (226)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEe-CCEEEecC
Confidence 99999999999999887799999999998546889999999998 58998865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=338.58 Aligned_cols=198 Identities=28% Similarity=0.479 Sum_probs=171.8
Q ss_pred eeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc--ccccceEEEEccCCCCCCCCCHH
Q 000517 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ--ETFARVSGYCEQTDIHSPNITVE 952 (1449)
Q Consensus 875 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~~lTv~ 952 (1449)
.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++.+++.+||.
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHH
Confidence 699999999999999999999999999999999998654 58999999987542 23456799999999989999999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000517 953 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032 (1449)
Q Consensus 953 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD 1032 (1449)
||+.+....+. ....+..+.++++++.+||.+..++.++ .||||||||++|||+|+.+|++|+|||||+|||
T Consensus 97 e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~illlDEPt~~LD 168 (218)
T cd03266 97 ENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168 (218)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCC
Confidence 99987654331 2334455678999999999887777654 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1033 ARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1033 ~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
+.++..+.+.|++++++|+|||++||++. ++...+|++++|. +|++++.|
T Consensus 169 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~-~G~i~~~~ 218 (218)
T cd03266 169 VMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLH-RGRVVYEG 218 (218)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEeecC
Confidence 99999999999999777999999999986 5778899999997 58888754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=341.41 Aligned_cols=203 Identities=26% Similarity=0.398 Sum_probs=173.9
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---cc-ccceEEEEccCCCCCCC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ET-FARVSGYCEQTDIHSPN 948 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~-~~~~~gyv~Q~d~~~~~ 948 (1449)
++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... .. .++.++|++|++.+++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 34699999999999999999999999999999999998654 58999999987532 12 23568999999999999
Q ss_pred CCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000517 949 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028 (1449)
Q Consensus 949 lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPT 1028 (1449)
+|++||+.+....+. .......+.++++++.+++.+..++.++ .||||||||++||++|+.+|++|+|||||
T Consensus 90 ~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt 161 (232)
T cd03218 90 LTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKAS-----SLSGGERRRVEIARALATNPKFLLLDEPF 161 (232)
T ss_pred CcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999999987643321 2233445678899999999887777653 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1029 TGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1029 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
+|||+.++..+.+.|+++++.|+|||+++|+++ ++.+.+|++++|. +|++++.|+.+
T Consensus 162 ~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 218 (232)
T cd03218 162 AGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIY-EGKVLAEGTPE 218 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEEeCHH
Confidence 999999999999999999877999999999986 5788899999997 58999988763
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=354.07 Aligned_cols=201 Identities=26% Similarity=0.419 Sum_probs=176.6
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc--ccccceEEEEccCCCCCCCCC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ--ETFARVSGYCEQTDIHSPNIT 950 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~~lT 950 (1449)
++.+|+|+||++++||++||+|||||||||||++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 35699999999999999999999999999999999998665 58999999987532 234567999999999999999
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000517 951 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1030 (1449)
Q Consensus 951 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsg 1030 (1449)
|.||+.+.+.++. ...++..+.++++++.+||.+..++.++ .||||||||++||+||+.+|++|+|||||+|
T Consensus 92 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lliLDEPt~g 163 (301)
T TIGR03522 92 VREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTG 163 (301)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999998776542 2234445678999999999988888764 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1031 LDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1031 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
||+.++..+++.|+++++ ++|||++||+++ ++.+.+|++++|. +|++++.|+.
T Consensus 164 LD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~-~G~i~~~g~~ 216 (301)
T TIGR03522 164 LDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIIN-KGKIVADKKL 216 (301)
T ss_pred CCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999864 799999999986 6788899999998 5899999986
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=358.72 Aligned_cols=218 Identities=24% Similarity=0.330 Sum_probs=183.1
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|++++++.. .+++.+|+|+||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 4567776654310 1135699999999999999999999999999999999998765 5899999998754
Q ss_pred c------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000517 929 Q------ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLS 1002 (1449)
Q Consensus 929 ~------~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1002 (1449)
. ..+++.+||++|++.+++.+||+||+.+....+. ....+.++.++++++.+||.+..++.++ .||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYPA-----QLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCChh-----hCC
Confidence 2 1235679999999999999999999998755432 2334455678999999999888777653 799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEE
Q 000517 1003 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081 (1449)
Q Consensus 1003 gGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v 1081 (1449)
||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.+|++++|+ +|+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~-~G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVID-AGRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 5777899999997 58999
Q ss_pred EecCCC
Q 000517 1082 YCGPLG 1087 (1449)
Q Consensus 1082 ~~G~~~ 1087 (1449)
+.|+..
T Consensus 221 ~~g~~~ 226 (343)
T PRK11153 221 EQGTVS 226 (343)
T ss_pred EEcCHH
Confidence 999863
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=347.44 Aligned_cols=209 Identities=23% Similarity=0.306 Sum_probs=177.6
Q ss_pred ccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---cc----ccceEEE
Q 000517 866 ERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ET----FARVSGY 938 (1449)
Q Consensus 866 ~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~----~~~~~gy 938 (1449)
+..+.++++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... .. .++.++|
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~ 106 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEE
Confidence 444455667899999999999999999999999999999999998665 48999999987532 11 2357999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000517 939 CEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVAN 1018 (1449)
Q Consensus 939 v~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~ 1018 (1449)
++|++.+++.+||+||+.+...... .......+.++++++.++|.+..++.++ .||||||||++||+||+.+
T Consensus 107 v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 107 VFQSFALLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVD 178 (269)
T ss_pred EecCcccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcC
Confidence 9999999989999999988654321 2233445678899999999888787754 7999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1019 PSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1019 p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|+||+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|+.
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~-~G~i~~~g~~ 245 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMK-DGRLVQVGTP 245 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999999999999754 899999999986 5678899999997 5899999875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=339.92 Aligned_cols=206 Identities=27% Similarity=0.365 Sum_probs=172.7
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC------CCceEEEEcCCCccCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV------PPKTSAYISQNDLHIA 258 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~~ 258 (1449)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccCC
Confidence 5899999999999999999999999999999999999997 999999998875432 2457999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 259 EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
.+||+||+.++........ ..+ ....++.+++.+||.+..++.+++
T Consensus 91 ~~tv~~~l~~~~~~~~~~~---------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~- 136 (235)
T cd03261 91 SLTVFENVAFPLREHTRLS---------EEE------------------------IREIVLEKLEAVGLRGAEDLYPAE- 136 (235)
T ss_pred CCcHHHHHHHHHhhccCCC---------HHH------------------------HHHHHHHHHHHcCCchhhcCChhh-
Confidence 9999999988653211000 000 011245678999998877887765
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++. |..+++.++||+|++|+
T Consensus 137 ----LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vs-H~~~~~~~~~d~v~~l~ 211 (235)
T cd03261 137 ----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVT-HDLDTAFAIADRIAVLY 211 (235)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe-cCHHHHHHhcCEEEEEE
Confidence 9999999999999999999999999999999999999999999998764466766654 55668889999999999
Q ss_pred CCeEEEecChhhHH
Q 000517 419 EGKIVYHGPQDHVL 432 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1449)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (235)
T cd03261 212 DGKIVAEGTPEELR 225 (235)
T ss_pred CCeEEEecCHHHHc
Confidence 99999999987763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=361.98 Aligned_cols=202 Identities=26% Similarity=0.396 Sum_probs=176.8
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-ccccceEEEEccCCCCCCCCCHH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFARVSGYCEQTDIHSPNITVE 952 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~ 952 (1449)
+.+|+|+|++|++||+++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.+||++|+..+++.+||+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~ 93 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVA 93 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHH
Confidence 4699999999999999999999999999999999998765 58999999987532 12346799999999999999999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000517 953 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032 (1449)
Q Consensus 953 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD 1032 (1449)
||+.|....+. ....+.++.++++++.++|.+..++.++ .|||||||||+|||||+.+|++|+|||||+|||
T Consensus 94 eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD 165 (369)
T PRK11000 94 ENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165 (369)
T ss_pred HHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99998765432 2334455778999999999988887754 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1033 ARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1033 ~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|. +|+++..|++.
T Consensus 166 ~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~-~G~i~~~g~~~ 219 (369)
T PRK11000 166 AALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKPL 219 (369)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 99999999999999765 899999999986 6788899999998 58999999864
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=342.31 Aligned_cols=216 Identities=26% Similarity=0.384 Sum_probs=179.1
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 55667665442 34699999999999999999999999999999999998654 5899999998753
Q ss_pred cc-cccceEEEEccCCCCCCCCCHHHHHHHHHHhccCC-CCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000517 929 QE-TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQR 1006 (1449)
Q Consensus 929 ~~-~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 1006 (1449)
.. ..++.++|++|++.+++.+||+||+.+....+... ........+.++++++.++|.+..++.++ .||||||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 142 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA-----QLSGGQR 142 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHH
Confidence 21 22457999999998888999999998865432110 01223344567899999999887777654 7999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecC
Q 000517 1007 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085 (1449)
Q Consensus 1007 qRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~ 1085 (1449)
||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +|++++.|+
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~ 220 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMN-KGRIEQVGT 220 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEecC
Confidence 9999999999999999999999999999999999999999865 899999999986 5678899999997 589999987
Q ss_pred C
Q 000517 1086 L 1086 (1449)
Q Consensus 1086 ~ 1086 (1449)
.
T Consensus 221 ~ 221 (239)
T cd03296 221 P 221 (239)
T ss_pred H
Confidence 5
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=336.02 Aligned_cols=192 Identities=29% Similarity=0.417 Sum_probs=164.0
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCC-CCCCCCHH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDI-HSPNITVE 952 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~-~~~~lTv~ 952 (1449)
+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+......++.+||++|++. .+...|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 4699999999999999999999999999999999998664 58999999987643445567999999974 34467999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000517 953 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032 (1449)
Q Consensus 953 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD 1032 (1449)
||+.+..... . ...+.++++++.++|.+..++.++ .||||||||++|||+|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~--~-----~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL--D-----AGNEQAETVLKDLDLYALKERHPL-----SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc--C-----ccHHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754321 1 112467899999999988777654 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEE
Q 000517 1033 ARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081 (1449)
Q Consensus 1033 ~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v 1081 (1449)
+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLA-NGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEC
Confidence 99999999999999777999999999986 4667899999997 47764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=363.26 Aligned_cols=206 Identities=28% Similarity=0.382 Sum_probs=177.3
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---ccccceEEEEccCCCCCCCC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNI 949 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~l 949 (1449)
++.+|+|+||+|++||+++|+|||||||||||++|+|...+ .+|+|.++|.+... ..+++.+||++|++.+++.+
T Consensus 15 ~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 45799999999999999999999999999999999998665 58999999987542 34567899999999998999
Q ss_pred CHHHHHHHHHHhccCC-CCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000517 950 TVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028 (1449)
Q Consensus 950 Tv~e~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPT 1028 (1449)
||+|++.++....... ....+..++.++++++.++|.+..++.+. .||||||||+.|||||+++|++|+|||||
T Consensus 93 tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~-----~LSgGerQRv~IArAL~~~P~iLLLDEPt 167 (402)
T PRK09536 93 DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT-----SLSGGERQRVLLARALAQATPVLLLDEPT 167 (402)
T ss_pred CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 9999998753211100 11123445678999999999988888754 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1029 TGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1029 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|+ +|++++.|+++
T Consensus 168 sgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~-~G~iv~~G~~~ 224 (402)
T PRK09536 168 ASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLA-DGRVRAAGPPA 224 (402)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEecCHH
Confidence 999999999999999999877999999999986 5778999999998 58999999875
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=340.23 Aligned_cols=204 Identities=26% Similarity=0.337 Sum_probs=171.3
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCC-----CCCeeEEEEEEcCccCcc-----ccccceEEEEccC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRK-----TSGYVEGEIKISGYPKVQ-----ETFARVSGYCEQT 942 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~-----~~~~~~G~I~i~G~~~~~-----~~~~~~~gyv~Q~ 942 (1449)
++.+|+|+|++|++||+++|+||||||||||+++|+|.. .+ .+|+|.++|.+... ..+++.+||++|+
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP--DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC--CCeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 346999999999999999999999999999999999976 43 58999999987532 2345679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000517 943 DIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 1022 (1449)
Q Consensus 943 d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~il 1022 (1449)
+.++ .+||+||+.+....+.. ......++.++++++.+||.+..+.... +.+||||||||++||++|+.+|++|
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~ll 163 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVL 163 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 8887 79999999886543311 1122245678899999999876665531 2479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1023 FMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1023 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
+|||||+|||+.++..+++.|++++++ +|||++||+++ ++.+.+|++++|. +|++++.|+..
T Consensus 164 llDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 225 (227)
T cd03260 164 LLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLL-NGRLVEFGPTE 225 (227)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEe-CCEEEEecCcc
Confidence 999999999999999999999999876 99999999986 5677899999997 58999998763
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=335.88 Aligned_cols=195 Identities=29% Similarity=0.433 Sum_probs=168.9
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-ccccceEEEEccCCCCCCCCCHH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFARVSGYCEQTDIHSPNITVE 952 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~ 952 (1449)
+.+|+|+||++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCcccchHHHHhhEEEecCCCccCccCcHH
Confidence 4699999999999999999999999999999999998654 58999999987532 23456799999999888999999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000517 953 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032 (1449)
Q Consensus 953 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD 1032 (1449)
||+.+....+. . .++.++++++.++|.+..++.++ .||||||||++||++|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 158 (208)
T cd03268 91 ENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158 (208)
T ss_pred HHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCcccCC
Confidence 99988654321 1 13457889999999887777654 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1033 ARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1033 ~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|. +|++++.|
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~-~g~i~~~g 208 (208)
T cd03268 159 PDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIIN-KGKLIEEG 208 (208)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 99999999999998877999999999986 4667899999998 58988765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=321.89 Aligned_cols=206 Identities=24% Similarity=0.405 Sum_probs=176.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCccCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIAE 259 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1449)
.++|+|||+++++||+++|+||||+||||||++|+|..++. +|+|.++|++++...+ ++-++||||....|+.
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~ 92 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPR 92 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhh
Confidence 57999999999999999999999999999999999999987 9999999999987655 4568999999999999
Q ss_pred CCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhC-CCcccccccccc
Q 000517 260 MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILG-LDVCADTMVGNA 338 (1449)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lg-L~~~~dt~vg~~ 338 (1449)
|||+|||..++..+... . .. ....|.+.+.|- |.+..+++-|+
T Consensus 93 LTVeENL~~g~~~~~~~-~----------~~------------------------~~~~e~v~~lFP~Lker~~~~aG~- 136 (237)
T COG0410 93 LTVEENLLLGAYARRDK-E----------AQ------------------------ERDLEEVYELFPRLKERRNQRAGT- 136 (237)
T ss_pred CcHHHHHhhhhhccccc-c----------cc------------------------cccHHHHHHHChhHHHHhcCcccC-
Confidence 99999999876433110 0 00 001344555554 55667777777
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
|||||||-++|||||+++|++|+|||||.||-|.-..+|.+.|+++.+..+ .+|+.+.|....+.+++|+.++|.
T Consensus 137 ----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g-~tIlLVEQn~~~Al~iaDr~yvle 211 (237)
T COG0410 137 ----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG-MTILLVEQNARFALEIADRGYVLE 211 (237)
T ss_pred ----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCC-cEEEEEeccHHHHHHhhCEEEEEe
Confidence 999999999999999999999999999999999999999999999987544 556667999999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 000517 419 EGKIVYHGPQDHVLA 433 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1449)
+|+|++.|+.+++.+
T Consensus 212 ~Griv~~G~~~eL~~ 226 (237)
T COG0410 212 NGRIVLSGTAAELLA 226 (237)
T ss_pred CCEEEEecCHHHHhc
Confidence 999999999998863
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=326.31 Aligned_cols=212 Identities=27% Similarity=0.389 Sum_probs=184.4
Q ss_pred ccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc----ccccceEEEEccCC
Q 000517 868 GFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ----ETFARVSGYCEQTD 943 (1449)
Q Consensus 868 ~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~d 943 (1449)
++..+...+++|||+++++||++||+||||||||||+|+|+|..+| .+|+|.++|.++.. +..+..++--+|..
T Consensus 11 ~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~ 88 (250)
T COG0411 11 SKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQIT 88 (250)
T ss_pred eeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeecccc
Confidence 3345667899999999999999999999999999999999998776 58999999998643 23455688889999
Q ss_pred CCCCCCCHHHHHHHHHHhcc--------CCC-CChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHH
Q 000517 944 IHSPNITVEESVIFSAWLRL--------APE-INSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVE 1014 (1449)
Q Consensus 944 ~~~~~lTv~e~l~f~~~lr~--------~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~a 1014 (1449)
.+|+++||.||+..++..+. +.. ...++..+++.++|+.+||.+.+|...| +||+||||||.||||
T Consensus 89 rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArA 163 (250)
T COG0411 89 RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARA 163 (250)
T ss_pred cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHH
Confidence 99999999999998765331 111 1234566788999999999999999976 699999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCC
Q 000517 1015 LVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGK 1088 (1449)
Q Consensus 1015 L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~ 1088 (1449)
|+.+|++|+||||.+||.+.....+.+.|+++.+ .|.||+++-|+.+. ++..+|++++|. .|+++..|++.+
T Consensus 164 La~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~-~G~~IAeG~P~e 236 (250)
T COG0411 164 LATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLN-YGEVIAEGTPEE 236 (250)
T ss_pred HhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEecc-CCcCcccCCHHH
Confidence 9999999999999999999999999999999987 47999999999984 899999999998 589999999853
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=323.12 Aligned_cols=206 Identities=27% Similarity=0.415 Sum_probs=175.2
Q ss_pred ccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc----ccccceEEEEccCCCC
Q 000517 870 ADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ----ETFARVSGYCEQTDIH 945 (1449)
Q Consensus 870 ~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~d~~ 945 (1449)
.|++.++|++||+++++||+++|+|+|||||||||++|+|..++ .+|+|.++|.++.. +..++.++||||....
T Consensus 12 ~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~i 89 (237)
T COG0410 12 GYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDITGLPPHERARLGIAYVPEGRRI 89 (237)
T ss_pred cccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecCCCCHHHHHhCCeEeCcccccc
Confidence 45678899999999999999999999999999999999998764 48999999998653 3456789999999999
Q ss_pred CCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000517 946 SPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 1024 (1449)
Q Consensus 946 ~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illL 1024 (1449)
||.+||+|||..++..+.. ++.....++++.+.+= |.+.+++..| .|||||||-|+|||||+++|++|+|
T Consensus 90 F~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~PklLLL 160 (237)
T COG0410 90 FPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALMSRPKLLLL 160 (237)
T ss_pred hhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHhcCCCEEEe
Confidence 9999999999987655432 1112222677777763 6667777765 6999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCC
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGK 1088 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~ 1088 (1449)
||||.||-|.-.+.|.+.|++++++ |.||+++-+... ...+.+|+.++|. .|++++.|+..+
T Consensus 161 DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle-~Griv~~G~~~e 223 (237)
T COG0410 161 DEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLE-NGRIVLSGTAAE 223 (237)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEe-CCEEEEecCHHH
Confidence 9999999999999999999999866 779999988765 4678899999997 599999999753
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=356.15 Aligned_cols=209 Identities=23% Similarity=0.405 Sum_probs=177.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-CceEEEEcCCCccCCCCCHH
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTVR 263 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 263 (1449)
++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|+++|+++....+ ++.++||+|++.++|++||+
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~ 92 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVF 92 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHH
Confidence 5899999999999999999999999999999999999998 9999999998865433 36799999999999999999
Q ss_pred HHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccC
Q 000517 264 ETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343 (1449)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGl 343 (1449)
||+.|+.+....... .++.+ .+..++.+++.+||++..|+.+.+ |
T Consensus 93 eni~~~~~~~~~~~~------~~~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~~-----L 137 (353)
T PRK10851 93 DNIAFGLTVLPRRER------PNAAA------------------------IKAKVTQLLEMVQLAHLADRYPAQ-----L 137 (353)
T ss_pred HHHHhhhhhcccccC------CCHHH------------------------HHHHHHHHHHHcCCchhhhCChhh-----C
Confidence 999997653210000 00000 112356789999999888888765 9
Q ss_pred ChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEE
Q 000517 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423 (1449)
Q Consensus 344 SGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv 423 (1449)
||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|+ ++|+..++..++|+|++|++|+++
T Consensus 138 SgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~-vTHd~~ea~~~~Dri~vl~~G~i~ 216 (353)
T PRK10851 138 SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF-VTHDQEEAMEVADRVVVMSQGNIE 216 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999997755666655 456778999999999999999999
Q ss_pred EecChhhHH
Q 000517 424 YHGPQDHVL 432 (1449)
Q Consensus 424 ~~G~~~~~~ 432 (1449)
+.|+++++.
T Consensus 217 ~~g~~~~i~ 225 (353)
T PRK10851 217 QAGTPDQVW 225 (353)
T ss_pred EEcCHHHHH
Confidence 999998884
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=373.33 Aligned_cols=214 Identities=25% Similarity=0.445 Sum_probs=181.8
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++|+||+|.++..+ +..+|+|+||+|+|||.+||+||||+||||+.++|-....| .+|+|.+||+|+
T Consensus 465 ~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P--tsG~IllDG~~i 532 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP--TSGRILLDGVPI 532 (716)
T ss_pred eEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCCeEEECCeeh
Confidence 689999999998654 46799999999999999999999999999999999986654 689999999996
Q ss_pred cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHH-----HHHHHHHHHcCCcccccccccCCCCC
Q 000517 928 VQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKA-----EFVNEVLETIELDAIKDSLVGIPGVN 999 (1449)
Q Consensus 928 ~~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~-----~~v~~~l~~l~L~~~~~~~vg~~~~~ 999 (1449)
.+ ..+|+++|+|.|+|.+|. -||+|||.|+.. ..+.++.. ..+.+.+ .++.+-.||.||..|.
T Consensus 533 ~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGEkG~- 603 (716)
T KOG0058|consen 533 SDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGEKGS- 603 (716)
T ss_pred hhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHH--HhCccccccccCCccc-
Confidence 54 567899999999999975 699999999743 22232221 1222233 3566779999998876
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcE
Q 000517 1000 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079 (1449)
Q Consensus 1000 ~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~ 1079 (1449)
.||||||||++|||||++||.||||||.||.||+++...|.++|.++.+ ++|||++.|+.+ ..+.+|+|++++ +|+
T Consensus 604 qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~-~G~ 679 (716)
T KOG0058|consen 604 QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVID-KGR 679 (716)
T ss_pred cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEc-CCe
Confidence 5999999999999999999999999999999999999999999998764 699999999875 578999999997 589
Q ss_pred EEEecCC
Q 000517 1080 IIYCGPL 1086 (1449)
Q Consensus 1080 ~v~~G~~ 1086 (1449)
+++.|+-
T Consensus 680 V~E~G~h 686 (716)
T KOG0058|consen 680 VVEMGTH 686 (716)
T ss_pred EEecccH
Confidence 9999964
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=342.17 Aligned_cols=205 Identities=31% Similarity=0.390 Sum_probs=171.9
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc------ccccceEEEEccCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ------ETFARVSGYCEQTDIHSP 947 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~~~~~~gyv~Q~d~~~~ 947 (1449)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 4699999999999999999999999999999999998654 58999999987532 234567999999999899
Q ss_pred CCCHHHHHHHHHHhc-----cCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000517 948 NITVEESVIFSAWLR-----LAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 1022 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr-----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~il 1022 (1449)
.+||+||+.+..... ...........+.++++++.++|.+..++.+ ..||||||||++||++|+.+|+||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998753210 0001112234466888999999987777664 379999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1023 FMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1023 lLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|. +|++++.|+..
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~-~G~i~~~~~~~ 230 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLK-DGRIVFDGPPA 230 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeecCHH
Confidence 999999999999999999999999764 899999999986 5777899999998 58999998763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=337.41 Aligned_cols=200 Identities=27% Similarity=0.439 Sum_probs=172.7
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc--ccccceEEEEccCCCCCCCCCH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ--ETFARVSGYCEQTDIHSPNITV 951 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 951 (1449)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.+||++|++.+++..|+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 4699999999999999999999999999999999998654 58999999987532 2345679999999998889999
Q ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000517 952 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031 (1449)
Q Consensus 952 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgL 1031 (1449)
+||+.+....+. .......+.++++++.++|.+..++.++ .||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 93 REHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 999988654432 2233345668899999999887777654 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1032 DARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1032 D~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|+.+...+.+.|+++++ ++|||+++|++. .+.+.+|++++|. +|++++.|+.
T Consensus 165 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 216 (220)
T cd03263 165 DPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMS-DGKLRCIGSP 216 (220)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecCCH
Confidence 99999999999999875 699999999986 4667899999997 5899998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=339.33 Aligned_cols=200 Identities=27% Similarity=0.342 Sum_probs=173.1
Q ss_pred eeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccc------cccceEEEEccCCCCCCC
Q 000517 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQE------TFARVSGYCEQTDIHSPN 948 (1449)
Q Consensus 875 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~------~~~~~~gyv~Q~d~~~~~ 948 (1449)
.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.... ..++.++|++|++.+++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 699999999999999999999999999999999998765 589999999875321 235679999999999999
Q ss_pred CCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000517 949 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028 (1449)
Q Consensus 949 lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPT 1028 (1449)
+|++||+.+....+. .......+.++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||
T Consensus 97 ~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 97 RTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 999999988654332 223344567889999999988777764 379999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1029 TGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1029 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +|++++.|+.
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 225 (233)
T cd03258 169 SALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVME-KGEVVEEGTV 225 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEecCH
Confidence 999999999999999999765 899999999986 5677899999997 5899998875
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=337.29 Aligned_cols=193 Identities=31% Similarity=0.467 Sum_probs=165.3
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccc-------cccceEEEEccCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQE-------TFARVSGYCEQTDIHS 946 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~-------~~~~~~gyv~Q~d~~~ 946 (1449)
+.+|+|+||++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.... ..++.++|++|++.++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 4699999999999999999999999999999999998654 589999999875321 1345799999999999
Q ss_pred CCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000517 947 PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1026 (1449)
Q Consensus 947 ~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDE 1026 (1449)
+.+||+||+.+....+. ......++.++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||
T Consensus 95 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 95 PDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYPS-----ELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred CCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcChh-----hcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 99999999998765432 2223345678899999999887777653 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcE
Q 000517 1027 PTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079 (1449)
Q Consensus 1027 PTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~ 1079 (1449)
||+|||+.++..+.+.|+++++ .|+|||+++|+++. + +.+|++++|++ |+
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRD-GK 217 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeC-Cc
Confidence 9999999999999999999976 58999999999863 4 48999999974 65
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=323.83 Aligned_cols=205 Identities=26% Similarity=0.345 Sum_probs=174.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC----CCceEEEEcCCC--ccC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV----PPKTSAYISQND--LHI 257 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d--~~~ 257 (1449)
.++|+|||+++.+||..+|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+-+|+||+ .+-
T Consensus 20 ~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLn 96 (252)
T COG1124 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN 96 (252)
T ss_pred hhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccC
Confidence 36999999999999999999999999999999999999998 999999998776542 356789999996 478
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc-ccccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV-CADTMVG 336 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~-~~dt~vg 336 (1449)
|..||++.|.-+.+..+.... ..++.++|+.+||+. ..+...-
T Consensus 97 P~~tv~~~l~Epl~~~~~~~~------------------------------------~~~i~~~L~~VgL~~~~l~R~P~ 140 (252)
T COG1124 97 PRRTVGRILSEPLRPHGLSKS------------------------------------QQRIAELLDQVGLPPSFLDRRPH 140 (252)
T ss_pred cchhHHHHHhhhhccCCccHH------------------------------------HHHHHHHHHHcCCCHHHHhcCch
Confidence 999999999876654322111 012466899999975 4566554
Q ss_pred ccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEE
Q 000517 337 NAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416 (1449)
Q Consensus 337 ~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~l 416 (1449)
+ |||||||||+|||||+.+|++|++|||||+||++...+|++.|.++.+..+-|.+ .+.|+..-+..+||||++
T Consensus 141 e-----LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l-~IsHdl~~v~~~cdRi~V 214 (252)
T COG1124 141 E-----LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYL-FISHDLALVEHMCDRIAV 214 (252)
T ss_pred h-----cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEE-EEeCcHHHHHHHhhheee
Confidence 3 9999999999999999999999999999999999999999999999886655555 467889999999999999
Q ss_pred EeCCeEEEecChhhHHH
Q 000517 417 MAEGKIVYHGPQDHVLA 433 (1449)
Q Consensus 417 L~~G~iv~~G~~~~~~~ 433 (1449)
|++|++++.++.+++.+
T Consensus 215 m~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 215 MDNGQIVEIGPTEELLS 231 (252)
T ss_pred eeCCeEEEeechhhhhc
Confidence 99999999999999864
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=357.37 Aligned_cols=205 Identities=23% Similarity=0.397 Sum_probs=177.9
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-CceEEEEcCCCccCCCCCHH
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTVR 263 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 263 (1449)
.+|+|+|+.+++|++++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|++.++|++||.
T Consensus 33 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 109 (377)
T PRK11607 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE 109 (377)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHH
Confidence 5899999999999999999999999999999999999998 9999999998765433 56799999999999999999
Q ss_pred HHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccC
Q 000517 264 ETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343 (1449)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGl 343 (1449)
||+.|+.+.++.. +.+ ....++.+++.+||.+..++.+.+ |
T Consensus 110 eNi~~~l~~~~~~----------~~~------------------------~~~~v~~~l~~l~L~~~~~~~~~~-----L 150 (377)
T PRK11607 110 QNIAFGLKQDKLP----------KAE------------------------IASRVNEMLGLVHMQEFAKRKPHQ-----L 150 (377)
T ss_pred HHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCchhhcCChhh-----C
Confidence 9999986543211 000 012356789999999888887765 9
Q ss_pred ChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEE
Q 000517 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423 (1449)
Q Consensus 344 SGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv 423 (1449)
||||||||+|||||+.+|++||||||+++||..++.++.+.|+++.+..+.|+|++ +|...++..++|+|++|++|+++
T Consensus 151 SgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v-THd~~ea~~laDri~vl~~G~i~ 229 (377)
T PRK11607 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMV-THDQEEAMTMAGRIAIMNRGKFV 229 (377)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-cCCHHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999877666676665 56677999999999999999999
Q ss_pred EecChhhHH
Q 000517 424 YHGPQDHVL 432 (1449)
Q Consensus 424 ~~G~~~~~~ 432 (1449)
..|+++++.
T Consensus 230 ~~g~~~~~~ 238 (377)
T PRK11607 230 QIGEPEEIY 238 (377)
T ss_pred EEcCHHHHH
Confidence 999999874
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=367.10 Aligned_cols=213 Identities=29% Similarity=0.465 Sum_probs=178.0
Q ss_pred CcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCc
Q 000517 846 PLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGY 925 (1449)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~ 925 (1449)
.-.++|+|++|++... +..+|+|+|++|+|||.+||+|+||||||||+|+|+|...| .+|+|.+||+
T Consensus 469 ~g~I~~~nvsf~y~~~-----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I~~dg~ 535 (709)
T COG2274 469 QGEIEFENVSFRYGPD-----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRILLDGV 535 (709)
T ss_pred CceEEEEEEEEEeCCC-----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCE
Confidence 3468999999987532 23699999999999999999999999999999999998776 5899999999
Q ss_pred cCc---cccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHc-------CCcccccccccC
Q 000517 926 PKV---QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-------ELDAIKDSLVGI 995 (1449)
Q Consensus 926 ~~~---~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-------~L~~~~~~~vg~ 995 (1449)
+.. ...+|+.+|||+|++.++ +-|++||+.++. ++.+. +.+.++++.- ++..-.|+.+|.
T Consensus 536 dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~-----p~~~~----e~i~~A~~~ag~~~fI~~lP~gy~t~v~E 605 (709)
T COG2274 536 DLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGN-----PEATD----EEIIEAAQLAGAHEFIENLPMGYDTPVGE 605 (709)
T ss_pred eHHhcCHHHHHhheeEEcccchhh-cCcHHHHHhcCC-----CCCCH----HHHHHHHHHhCcHHHHHhccccccccccc
Confidence 864 357899999999999876 469999998642 22222 2233333332 344457888887
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
.|. +||||||||++|||||+++|+||+||||||+||+.+.+.|++.|+++. .|+|+|+++|+++ ..+.+|++++|+
T Consensus 606 ~G~-~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl~ 681 (709)
T COG2274 606 GGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVLD 681 (709)
T ss_pred CCC-CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEcc
Confidence 665 699999999999999999999999999999999999999999999985 5899999999975 678999999997
Q ss_pred cCcEEEEecCC
Q 000517 1076 TGGRIIYCGPL 1086 (1449)
Q Consensus 1076 ~gG~~v~~G~~ 1086 (1449)
+|+++..|+.
T Consensus 682 -~Gkiv~~gs~ 691 (709)
T COG2274 682 -QGKIVEQGSH 691 (709)
T ss_pred -CCceeccCCH
Confidence 6999999986
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=326.15 Aligned_cols=221 Identities=24% Similarity=0.380 Sum_probs=184.9
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCC----ceEEEEcCCCccC
Q 000517 182 AKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP----KTSAYISQNDLHI 257 (1449)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 257 (1449)
....+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...+. .-++--+|...+|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 4567999999999999999999999999999999999999998 99999999999877653 3567889999999
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGN 337 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 337 (1449)
++|||.||+..++..+.. ........+..+ +.++ .......+|+.+||.+.+|+..|+
T Consensus 92 ~~lTVlENv~va~~~~~~---~~~~l~~~~~~~--------~e~~-----------~~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 92 PGLTVLENVAVGAHARLG---LSGLLGRPRARK--------EERE-----------ARERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred CCCcHHHHHHHHhhhhhh---hhhhhccccchh--------hHHH-----------HHHHHHHHHHHcCCchhhcchhhc
Confidence 999999999998764421 000000000000 0000 112357789999999999999998
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL 417 (1449)
||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.|+++.+.. ++.|+.+-|+..-++++||||++|
T Consensus 150 -----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~-g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 150 -----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRG-GVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred -----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEEeccHHHhhhccEEEec
Confidence 99999999999999999999999999999999999999999999998744 455556788999999999999999
Q ss_pred eCCeEEEecChhhHHH
Q 000517 418 AEGKIVYHGPQDHVLA 433 (1449)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1449)
+.|+++.+|+++++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999864
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=353.04 Aligned_cols=206 Identities=27% Similarity=0.374 Sum_probs=177.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC--CCceEEEEcCCCccCCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV--PPKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1449)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 35999999999999999999999999999999999999998 999999999875432 2467999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|+||+.+.....+... .+ ....++.+++.+||++..++.+++
T Consensus 131 v~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~ll~~~~L~~~~~~~~~~---- 172 (340)
T PRK13536 131 VRENLLVFGRYFGMST----------RE------------------------IEAVIPSLLEFARLESKADARVSD---- 172 (340)
T ss_pred HHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhCCChhh----
Confidence 9999997655432110 00 011245678899999989998876
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
|||||||||+||+||+++|++++|||||+|||+.++.++++.|+++.+ .+.|++++ +|..+++.++||+|++|++|+
T Consensus 173 -LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilis-SH~l~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 173 -LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLT-THFMEEAERLCDRLCVLEAGR 249 (340)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999975 46777766 456789999999999999999
Q ss_pred EEEecChhhHHH
Q 000517 422 IVYHGPQDHVLA 433 (1449)
Q Consensus 422 iv~~G~~~~~~~ 433 (1449)
++++|+.+++.+
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999998864
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=334.65 Aligned_cols=207 Identities=28% Similarity=0.410 Sum_probs=181.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCC----CCCCCceEEEEcCCC-ccCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLE----EFVPPKTSAYISQND-LHIA 258 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~----~~~~~~~~~yv~Q~d-~~~~ 258 (1449)
..+|+|+|+.+++|+.++|+||||||||||+++|+|.+.|. +|+|.++|.+.. ....++.+|||+|++ ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 46999999999999999999999999999999999999998 899999998865 223468899999995 5778
Q ss_pred CCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 259 EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
.-||.|.+.|+....+.... + .+.+++.+++.+||.+..+..+-+
T Consensus 94 ~~tV~~evafg~~n~g~~~~----------e------------------------~~~rv~~~l~~vgl~~~~~r~p~~- 138 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPRE----------E------------------------IEERVAEALELVGLEELLDRPPFN- 138 (235)
T ss_pred cCcHHHHHhhchhhcCCCHH----------H------------------------HHHHHHHHHHHcCchhhccCCccc-
Confidence 88999999999877654311 1 123567889999999999888766
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.+..++|+|+. +|+.+.+.+++|++++|+
T Consensus 139 ----LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~-tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 139 ----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIV-THDLELVLEYADRVVVLD 213 (235)
T ss_pred ----cCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEE-eCcHHHHHhhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999987656676664 677899999999999999
Q ss_pred CCeEEEecChhhHHH
Q 000517 419 EGKIVYHGPQDHVLA 433 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1449)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877754
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=380.82 Aligned_cols=207 Identities=29% Similarity=0.487 Sum_probs=178.5
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1449)
.+|+|+|++|+|||.++|+|+||||||||+|+|+|+++|. +|+|.+||+++++.+. |+.++||+|++.+| +.|
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gS 562 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF-SGS 562 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhh-cCc
Confidence 5899999999999999999999999999999999999998 9999999999987764 68999999987755 579
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
++||+.++. |+.+.++.++++...+... . +..++...||.||+ +..
T Consensus 563 I~eNi~l~~-------------------------p~~~~e~i~~A~~~ag~~~-----f---I~~lP~gy~t~v~E-~G~ 608 (709)
T COG2274 563 IRENIALGN-------------------------PEATDEEIIEAAQLAGAHE-----F---IENLPMGYDTPVGE-GGA 608 (709)
T ss_pred HHHHHhcCC-------------------------CCCCHHHHHHHHHHhCcHH-----H---HHhccccccccccc-CCC
Confidence 999998753 3334445555555554432 2 23489999999997 355
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
+||||||||++|||||+++|+||+||||||+||+.+...|.+.|.++. .++|+|+..|.+ .+.+.||+|++|++|+
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl--~ti~~adrIiVl~~Gk 684 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRL--STIRSADRIIVLDQGK 684 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccc--hHhhhccEEEEccCCc
Confidence 699999999999999999999999999999999999999999999986 368888877654 5889999999999999
Q ss_pred EEEecChhhHHH
Q 000517 422 IVYHGPQDHVLA 433 (1449)
Q Consensus 422 iv~~G~~~~~~~ 433 (1449)
|+.+|+++++++
T Consensus 685 iv~~gs~~ell~ 696 (709)
T COG2274 685 IVEQGSHEELLA 696 (709)
T ss_pred eeccCCHHHHHH
Confidence 999999999986
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=351.33 Aligned_cols=206 Identities=26% Similarity=0.417 Sum_probs=176.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC--CCceEEEEcCCCccCCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV--PPKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1449)
+++|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999998 999999998875421 1456999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|+||+.+.++..+... .+ .+..++.+++.+||++..++.+++
T Consensus 83 v~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~---- 124 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------DE------------------------AEERAEELLELFELGEAADRPVGT---- 124 (302)
T ss_pred HHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCChhHhCCchhh----
Confidence 9999998765543210 00 011346789999999888888876
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++ .+.|++++ +|..+++.++||+|++|++|+
T Consensus 125 -LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~-sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 125 -YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLT-THYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999875 46676665 455778999999999999999
Q ss_pred EEEecChhhHHH
Q 000517 422 IVYHGPQDHVLA 433 (1449)
Q Consensus 422 iv~~G~~~~~~~ 433 (1449)
+++.|+.+++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999988765
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=356.50 Aligned_cols=205 Identities=22% Similarity=0.395 Sum_probs=176.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-CceEEEEcCCCccCCCCCHH
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTVR 263 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 263 (1449)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||+
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~ 93 (369)
T PRK11000 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVA 93 (369)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHH
Confidence 5899999999999999999999999999999999999998 9999999998765432 46799999999999999999
Q ss_pred HHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccC
Q 000517 264 ETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343 (1449)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGl 343 (1449)
||+.|+.+..+.. +.+ ....++++++.+||++..++.+++ |
T Consensus 94 eni~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~lgL~~~~~~~~~~-----L 134 (369)
T PRK11000 94 ENMSFGLKLAGAK----------KEE------------------------INQRVNQVAEVLQLAHLLDRKPKA-----L 134 (369)
T ss_pred HHHHhHHhhcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhcCChhh-----C
Confidence 9999976543211 000 012356789999999888888765 9
Q ss_pred ChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEE
Q 000517 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423 (1449)
Q Consensus 344 SGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv 423 (1449)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..+.|+|++ +|...++..++|+|++|++|+++
T Consensus 135 SgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~v-THd~~~~~~~~d~i~vl~~G~i~ 213 (369)
T PRK11000 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV-THDQVEAMTLADKIVVLDAGRVA 213 (369)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEE-eCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999876556676665 45667899999999999999999
Q ss_pred EecChhhHH
Q 000517 424 YHGPQDHVL 432 (1449)
Q Consensus 424 ~~G~~~~~~ 432 (1449)
..|+++++.
T Consensus 214 ~~g~~~~i~ 222 (369)
T PRK11000 214 QVGKPLELY 222 (369)
T ss_pred EEcCHHHHH
Confidence 999998874
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=311.81 Aligned_cols=217 Identities=26% Similarity=0.418 Sum_probs=182.8
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
++.+|++|++. .+++|++||++++|||++||+|||||||||||+.|+|...+ .+|++.+||.+..
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChh
Confidence 45677888763 46799999999999999999999999999999999998765 4899999999864
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000517 929 Q---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQ 1005 (1449)
Q Consensus 929 ~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1005 (1449)
. ..+.+..+..+|+..+.+..||+|-+.++..-... .-...+..+.++++|+..++.+...+.. ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 3 34566779999999888889999999987532211 1112244556889999999998887764 4799999
Q ss_pred HHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcE
Q 000517 1006 RKRLTIAVELVA------NPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079 (1449)
Q Consensus 1006 rqRl~Ia~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~ 1079 (1449)
||||.+||.|+. ++++||||||||.||...+..++++.|+++++|..|+++.||.+. ...++|++++|. +||
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~-~Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLH-QGR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeee-CCe
Confidence 999999999976 456999999999999999999999999999999999999999985 567899999997 699
Q ss_pred EEEecCCCC
Q 000517 1080 IIYCGPLGK 1088 (1449)
Q Consensus 1080 ~v~~G~~~~ 1088 (1449)
++..|++.+
T Consensus 219 v~a~g~p~~ 227 (259)
T COG4559 219 VIASGSPQD 227 (259)
T ss_pred EeecCCHHH
Confidence 999999864
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=315.40 Aligned_cols=209 Identities=22% Similarity=0.378 Sum_probs=180.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCccCC
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIA 258 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 258 (1449)
++++++|||+.+++||+++++|||||||||.+.++.|+.+|+ +|+|.+||.+++.+.. +.-+||+||++..|-
T Consensus 16 kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 456999999999999999999999999999999999999998 9999999999987653 345899999999999
Q ss_pred CCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 259 EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
.|||+|||.-..+.+....+ + .+.+...+.+|+.|+|.+++|.+-..
T Consensus 93 ~LtV~dNi~~vlE~~~~d~~--------~------------------------~~~~~~l~~LL~ef~i~hlr~~~a~s- 139 (243)
T COG1137 93 KLTVEDNIMAVLEIREKDLK--------K------------------------AERKEELDALLEEFHITHLRDSKAYS- 139 (243)
T ss_pred cCcHHHHHHHHHhhhhcchh--------H------------------------HHHHHHHHHHHHHhchHHHhcCcccc-
Confidence 99999999877655421100 0 01123457899999999999988765
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
||||||+|+.|||||+.+|+.++||||++|+||.+..+|.+.++.+.. .|-.++|+ -|...|+...|||.++++
T Consensus 140 ----LSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLIT-DHNVREtL~i~dRaYIi~ 213 (243)
T COG1137 140 ----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLIT-DHNVRETLDICDRAYIIS 213 (243)
T ss_pred ----cccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEc-cccHHHHHhhhheEEEEe
Confidence 999999999999999999999999999999999999999999999976 45566655 567889999999999999
Q ss_pred CCeEEEecChhhHHH
Q 000517 419 EGKIVYHGPQDHVLA 433 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1449)
+|++..+|+++++.+
T Consensus 214 ~G~vla~G~p~ei~~ 228 (243)
T COG1137 214 DGKVLAEGSPEEIVN 228 (243)
T ss_pred cCeEEecCCHHHHhc
Confidence 999999999998864
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=338.89 Aligned_cols=202 Identities=23% Similarity=0.358 Sum_probs=173.3
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-----ccccceEEEEccCCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-----ETFARVSGYCEQTDIHSPN 948 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-----~~~~~~~gyv~Q~d~~~~~ 948 (1449)
+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI--TSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH 91 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCChhHHHHhhceEEEecccccCCC
Confidence 4699999999999999999999999999999999998654 58999999987532 2345679999999988889
Q ss_pred CCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000517 949 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028 (1449)
Q Consensus 949 lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPT 1028 (1449)
+||+||+.+...... ........+.+.++++.+||.+..+..+ +.||||||||++||++|+.+|++|+|||||
T Consensus 92 ~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~ 164 (240)
T PRK09493 92 LTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFDEPT 164 (240)
T ss_pred CcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999999987542111 1233445567889999999987777764 379999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1029 TGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1029 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 220 (240)
T PRK09493 165 SALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFID-KGRIAEDGDP 220 (240)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeeCCH
Confidence 999999999999999999877999999999986 4667899999997 5899999875
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=336.20 Aligned_cols=216 Identities=24% Similarity=0.372 Sum_probs=177.8
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|+++.+... .....+|+|+||+|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 6 l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i~ 74 (233)
T PRK11629 6 LQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMS 74 (233)
T ss_pred EEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcC
Confidence 6677777655310 0014699999999999999999999999999999999998654 5899999998753
Q ss_pred cc------cc-cceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000517 929 QE------TF-ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGL 1001 (1449)
Q Consensus 929 ~~------~~-~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 1001 (1449)
.. .+ ++.++|++|++.+++.+|++||+.+....+ ....+..++.++++++.+||.+..++.+ ..|
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 146 (233)
T PRK11629 75 KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SEL 146 (233)
T ss_pred cCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 21 12 256999999998889999999998865432 1223344567889999999988777664 379
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcEE
Q 000517 1002 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080 (1449)
Q Consensus 1002 SgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~ 1080 (1449)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++. + ..+|++++|. +|++
T Consensus 147 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~-~~~~~~~~l~-~G~i 223 (233)
T PRK11629 147 SGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-A-KRMSRQLEMR-DGRL 223 (233)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhhCEEEEEE-CCEE
Confidence 99999999999999999999999999999999999999999999875 58999999999753 4 4568999987 5899
Q ss_pred EEecCC
Q 000517 1081 IYCGPL 1086 (1449)
Q Consensus 1081 v~~G~~ 1086 (1449)
+..|+.
T Consensus 224 ~~~~~~ 229 (233)
T PRK11629 224 TAELSL 229 (233)
T ss_pred EEEecc
Confidence 998875
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=340.80 Aligned_cols=214 Identities=25% Similarity=0.363 Sum_probs=179.0
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKF-------------HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEE-------------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcc
Confidence 5566766544 234699999999999999999999999999999999998654 5899999998653
Q ss_pred c-----------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCC
Q 000517 929 Q-----------ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPG 997 (1449)
Q Consensus 929 ~-----------~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 997 (1449)
. ...++.++|++|++.+++..|+.||+.+...... ....+...+.++++++.+||.+..++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 142 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP---- 142 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh----
Confidence 1 1345679999999988889999999987543211 1223344567889999999987776654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|+++ ++.+.+|++++|+ +
T Consensus 143 -~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~-~ 219 (250)
T PRK11264 143 -RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMD-Q 219 (250)
T ss_pred -hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-C
Confidence 479999999999999999999999999999999999999999999999877999999999986 5677899999998 5
Q ss_pred cEEEEecCC
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~v~~G~~ 1086 (1449)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 899999875
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=341.88 Aligned_cols=205 Identities=27% Similarity=0.340 Sum_probs=171.2
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc------ccccceEEEEccCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ------ETFARVSGYCEQTDIHSP 947 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~~~~~~gyv~Q~d~~~~ 947 (1449)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.+||++|++.+++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 4699999999999999999999999999999999998654 58999999987532 124567999999998899
Q ss_pred CCCHHHHHHHHHHhc-----cCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000517 948 NITVEESVIFSAWLR-----LAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 1022 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr-----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~il 1022 (1449)
.+||+||+.+..... ..........++.+.++++.++|.+..+..+ ..||||||||++||++|+.+|++|
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~ll 167 (243)
T TIGR02315 93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDLI 167 (243)
T ss_pred cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999997642110 0001112334567889999999987777664 379999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1023 FMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1023 lLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|. +|++++.|+.+
T Consensus 168 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~-~G~i~~~~~~~ 231 (243)
T TIGR02315 168 LADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLK-AGEIVFDGAPS 231 (243)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEE-CCEEEecCCHH
Confidence 999999999999999999999998754 899999999986 4667899999997 58999988764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=338.71 Aligned_cols=201 Identities=28% Similarity=0.406 Sum_probs=172.7
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---ccccceEEEEccCCCCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNIT 950 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lT 950 (1449)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 4599999999999999999999999999999999998654 58999999987532 234567999999999999999
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000517 951 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA--IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028 (1449)
Q Consensus 951 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPT 1028 (1449)
|+||+.+...++. .......+.+.++++.++|.+ ..++.+ +.||||||||++|||+|+.+|++|+|||||
T Consensus 92 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRYP-----HELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999988654331 223444567889999999985 556554 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1029 TGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1029 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|+.
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 220 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMK-NGEIVQVGTP 220 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEecCH
Confidence 999999999999999999764 899999999986 5678899999998 5899998875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=339.65 Aligned_cols=200 Identities=29% Similarity=0.406 Sum_probs=171.6
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCCCCCCHHH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEE 953 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~e 953 (1449)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+.+||++|++.+++..||.|
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e 89 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQD 89 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHH
Confidence 4699999999999999999999999999999999998654 58999999987542 2345899999998888999999
Q ss_pred HHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000517 954 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 1033 (1449)
Q Consensus 954 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~ 1033 (1449)
|+.+....+. .......+.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+
T Consensus 90 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~ 161 (255)
T PRK11248 90 NVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161 (255)
T ss_pred HHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 9987644321 223344567889999999988777664 37999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEec-CcEEEEecCC
Q 000517 1034 RAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKT-GGRIIYCGPL 1086 (1449)
Q Consensus 1034 ~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~-gG~~v~~G~~ 1086 (1449)
.++..+.+.|+++++ .|+|||++||+++ ++...+|++++|.+ +|+++..++.
T Consensus 162 ~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 162 FTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999854 5899999999986 57788999999974 5899998765
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=306.73 Aligned_cols=200 Identities=25% Similarity=0.402 Sum_probs=173.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC------CceEEEEcCCCccC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP------PKTSAYISQNDLHI 257 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 257 (1449)
..+|+|||+.|++||++.|.||||||||||||+|.+...|+ .|+|.+||+++..... +|.+|+|+||..++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 46999999999999999999999999999999999999998 9999999999875432 68899999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGN 337 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 337 (1449)
+..||.||+.|+.+..|...+. .+.++..+|+..||.+.++...-.
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~~~----------------------------------i~~rV~~~L~~VgL~~k~~~lP~~ 137 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPPRE----------------------------------IRRRVSEVLDLVGLKHKARALPSQ 137 (223)
T ss_pred ccchHhhhhhhhhhccCCCHHH----------------------------------HHHHHHHHHHHhccchhhhcCccc
Confidence 9999999999998877643210 122466789999999988877655
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL 417 (1449)
|||||||||+||||++.+|++|+.||||-.||+..+.+|++.+.++.+ .|.|++++ +|+..-+..+--+++.|
T Consensus 138 -----LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~A-THd~~lv~~~~~rvl~l 210 (223)
T COG2884 138 -----LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMA-THDLELVNRMRHRVLAL 210 (223)
T ss_pred -----cCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEE-eccHHHHHhccCcEEEE
Confidence 999999999999999999999999999999999999999999999875 56666665 56666677777899999
Q ss_pred eCCeEEEecC
Q 000517 418 AEGKIVYHGP 427 (1449)
Q Consensus 418 ~~G~iv~~G~ 427 (1449)
++|+++....
T Consensus 211 ~~Grl~~d~~ 220 (223)
T COG2884 211 EDGRLVRDES 220 (223)
T ss_pred eCCEEEeccc
Confidence 9999987643
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=345.81 Aligned_cols=218 Identities=23% Similarity=0.348 Sum_probs=179.3
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
++++|+++.++... ...+.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECC
Confidence 56777776553110 0124699999999999999999999999999999999998765 5899999998764
Q ss_pred c-----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc--ccccccccCCCCCC
Q 000517 929 Q-----ETFARVSGYCEQTDI-HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD--AIKDSLVGIPGVNG 1000 (1449)
Q Consensus 929 ~-----~~~~~~~gyv~Q~d~-~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~ 1000 (1449)
. ...++.+|||+|++. .+...||+||+.|..... ....++..+.++++++.+||. +..++.+ +.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----cc
Confidence 2 234678999999863 334579999999865432 234455567789999999996 5566654 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcE
Q 000517 1001 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079 (1449)
Q Consensus 1001 LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~ 1079 (1449)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|++++|. +|+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~-~G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMN-KGK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999765 899999999975 4667899999998 589
Q ss_pred EEEecCC
Q 000517 1080 IIYCGPL 1086 (1449)
Q Consensus 1080 ~v~~G~~ 1086 (1449)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13637 223 CELQGTP 229 (287)
T ss_pred EEEECCH
Confidence 9999986
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=334.97 Aligned_cols=199 Identities=26% Similarity=0.440 Sum_probs=168.9
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccc---c-ccceEEEEccCCCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQE---T-FARVSGYCEQTDIHSPNI 949 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~---~-~~~~~gyv~Q~d~~~~~l 949 (1449)
+.+|+|+||++++||++||+||||||||||+++|+|...+ .+|+|.++|.+.... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 4699999999999999999999999999999999998764 589999999865321 1 245699999999999999
Q ss_pred CHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHc-CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000517 950 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028 (1449)
Q Consensus 950 Tv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPT 1028 (1449)
|++||+.+...... .....+.+.++++.+ ++.+..++.+ +.||||||||++|||+|+.+|++|+|||||
T Consensus 91 t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 91 TVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred cHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99999988654321 122344567788887 5766666654 379999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1029 TGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1029 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
+|||+.++..+++.|+++++.|+|||+++|+++ ++...+|++++|. +|+++..|+.
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 216 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLE-RGRVVLEGTA 216 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEee-CCeEEEeCCH
Confidence 999999999999999999877899999999986 5678899999997 5899998875
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=332.76 Aligned_cols=192 Identities=28% Similarity=0.381 Sum_probs=165.7
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc------ccccceEEEEccCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ------ETFARVSGYCEQTDIHSP 947 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~~~~~~gyv~Q~d~~~~ 947 (1449)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++.+++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHHHHHHHhheEEEecChhhcc
Confidence 4699999999999999999999999999999999998654 58999999987532 124567999999999888
Q ss_pred CCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000517 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1027 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEP 1027 (1449)
.+|+.||+.+....+. ......++.++++++.++|.+..++.+. .||||||||++||++|+.+|++|+||||
T Consensus 93 ~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~lllLDEP 164 (214)
T TIGR02673 93 DRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFPE-----QLSGGEQQRVAIARAIVNSPPLLLADEP 164 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 9999999988754321 2233445678899999999877676653 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEec
Q 000517 1028 TTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 1028 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~ 1076 (1449)
|+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~ 212 (214)
T TIGR02673 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDD 212 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecC
Confidence 9999999999999999998777999999999986 57778999999974
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=317.98 Aligned_cols=208 Identities=25% Similarity=0.394 Sum_probs=189.1
Q ss_pred cccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCC
Q 000517 867 RGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHS 946 (1449)
Q Consensus 867 ~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~ 946 (1449)
+++..+++.+++|+||.++||+++|++|+|||||||++++|.|...+ .+|+|.++|.+... ..+.+|||.|.+..++
T Consensus 8 vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~~~-~~~~rIGyLPEERGLy 84 (300)
T COG4152 8 VTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPLSQ-EIKNRIGYLPEERGLY 84 (300)
T ss_pred chhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcchhh-hhhhhcccChhhhccC
Confidence 34455678899999999999999999999999999999999998765 58999999998754 3456799999999999
Q ss_pred CCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000517 947 PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1026 (1449)
Q Consensus 947 ~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDE 1026 (1449)
|.+||.|.|.|-|.++. ++.++.++.++.+|+++++......+|. .||-|++|++.+-.+++++|++++|||
T Consensus 85 ~k~tv~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~kIk-----~LSKGnqQKIQfisaviHePeLlILDE 156 (300)
T COG4152 85 PKMTVEDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKKIK-----ELSKGNQQKIQFISAVIHEPELLILDE 156 (300)
T ss_pred ccCcHHHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccchHH-----HhhhhhhHHHHHHHHHhcCCCEEEecC
Confidence 99999999999999874 5567788889999999999998888764 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1027 PTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1027 PTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
|.|||||.+.+.+-+.+.++++.|.|||+++|+++ .+.++||++++|+ +|+.|.+|+..
T Consensus 157 PFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~-kG~~V~~G~v~ 215 (300)
T COG4152 157 PFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLK-KGQTVLYGTVE 215 (300)
T ss_pred CccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheec-CCceEEeccHH
Confidence 99999999999999999999999999999999986 6889999999998 58999999973
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=353.09 Aligned_cols=206 Identities=24% Similarity=0.364 Sum_probs=176.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC------CceEEEEcCCCccC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP------PKTSAYISQNDLHI 257 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 257 (1449)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 46999999999999999999999999999999999999997 9999999998765322 45799999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGN 337 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 337 (1449)
+.+||+||+.+.....+... .+ ....++.+++.+||++..++.+++
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~ 140 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPK----------AE------------------------IKARVTELLELVGLSDKADRYPAQ 140 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhCChhh
Confidence 99999999998765432110 00 011346689999999888887765
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL 417 (1449)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++. |..+++.++||+|++|
T Consensus 141 -----LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvt-H~~~~i~~~~d~v~~l 214 (343)
T PRK11153 141 -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLIT-HEMDVVKRICDRVAVI 214 (343)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999765567776654 5567888999999999
Q ss_pred eCCeEEEecChhhHH
Q 000517 418 AEGKIVYHGPQDHVL 432 (1449)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1449)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999988874
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=332.62 Aligned_cols=199 Identities=28% Similarity=0.467 Sum_probs=164.8
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCC--CCCCH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHS--PNITV 951 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~--~~lTv 951 (1449)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.. ..++.++|++|++.+. +..||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 4699999999999999999999999999999999998654 5899999998653 3456799999998653 34899
Q ss_pred HHHHHHHHHhccC-CCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000517 952 EESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1030 (1449)
Q Consensus 952 ~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsg 1030 (1449)
+||+.+....+.. .....+...+.++++++.+++.+..++.++ .||||||||++||+||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG-----ELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875332110 001122344678899999999877777654 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1031 LDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1031 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +| +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLN-RT-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEc-Cc-EeecC
Confidence 9999999999999999877999999999986 5677899999996 44 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=341.87 Aligned_cols=214 Identities=28% Similarity=0.358 Sum_probs=179.1
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|+++.++ ++..+|+|+|++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 70 (274)
T PRK13647 5 IEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREVN 70 (274)
T ss_pred EEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 56777766542 123599999999999999999999999999999999998665 5899999998753
Q ss_pred c---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000517 929 Q---ETFARVSGYCEQTDI-HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTE 1004 (1449)
Q Consensus 929 ~---~~~~~~~gyv~Q~d~-~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1004 (1449)
. ...++.+||++|++. .++..||.||+.|..... .......++.++++++.++|.+..++.+. .||||
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgG 142 (274)
T PRK13647 71 AENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPY-----HLSYG 142 (274)
T ss_pred CCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChh-----hCCHH
Confidence 2 234567999999863 445689999998864321 22334445678899999999888877754 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1005 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1005 qrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.+|++++|+ +|++++.|
T Consensus 143 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~-~G~i~~~g 220 (274)
T PRK13647 143 QKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLK-EGRVLAEG 220 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999976 4668899999997 58999999
Q ss_pred CC
Q 000517 1085 PL 1086 (1449)
Q Consensus 1085 ~~ 1086 (1449)
+.
T Consensus 221 ~~ 222 (274)
T PRK13647 221 DK 222 (274)
T ss_pred CH
Confidence 86
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=344.59 Aligned_cols=218 Identities=24% Similarity=0.345 Sum_probs=178.7
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
++++|++++++... .....+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|+++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 56777777653210 0114599999999999999999999999999999999998765 5899999998753
Q ss_pred c-------ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000517 929 Q-------ETFARVSGYCEQTDI-HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-AIKDSLVGIPGVN 999 (1449)
Q Consensus 929 ~-------~~~~~~~gyv~Q~d~-~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 999 (1449)
. ..+++.+|||+|++. .+...||+||+.|+.... ....++..+.++++++.++|. +..++.+ +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP-----F 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----c
Confidence 1 234567999999862 233579999999875432 223444556789999999996 5566654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCc
Q 000517 1000 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGG 1078 (1449)
Q Consensus 1000 ~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG 1078 (1449)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|. +|
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-KG 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999764 899999999986 5778899999997 58
Q ss_pred EEEEecCC
Q 000517 1079 RIIYCGPL 1086 (1449)
Q Consensus 1079 ~~v~~G~~ 1086 (1449)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 99999986
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=341.77 Aligned_cols=216 Identities=20% Similarity=0.311 Sum_probs=180.2
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTR-------------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 36677777654 234699999999999999999999999999999999998654 589999999865
Q ss_pred cc------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000517 928 VQ------ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGL 1001 (1449)
Q Consensus 928 ~~------~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 1001 (1449)
.. ...++.++|++|+..+++.+||.||+.+...... ........+.+.++++.++|.+..++.++ .|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPS-----EL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hC
Confidence 32 1235679999999988899999999987643211 12233344567889999999887777654 79
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEE
Q 000517 1002 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080 (1449)
Q Consensus 1002 SgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~ 1080 (1449)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|++++|. +|++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~-~G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVA-DKKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999765 899999999975 5778899999997 5899
Q ss_pred EEecCCC
Q 000517 1081 IYCGPLG 1087 (1449)
Q Consensus 1081 v~~G~~~ 1087 (1449)
++.|+..
T Consensus 223 ~~~g~~~ 229 (269)
T PRK11831 223 VAHGSAQ 229 (269)
T ss_pred EEeCCHH
Confidence 9998863
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=332.17 Aligned_cols=194 Identities=27% Similarity=0.362 Sum_probs=166.9
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc------ccccceEEEEccCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ------ETFARVSGYCEQTDIHSP 947 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~~~~~~gyv~Q~d~~~~ 947 (1449)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 4699999999999999999999999999999999998654 58999999986532 124567999999999999
Q ss_pred CCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000517 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1027 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEP 1027 (1449)
.+|++||+.+....+. ...+..++.++++++.+||.+..++.++ .||||||||++||++|+.+|++++||||
T Consensus 92 ~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCChh-----hcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999988754332 2233445678899999999887777653 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcE
Q 000517 1028 TTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079 (1449)
Q Consensus 1028 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~ 1079 (1449)
|+|||+.++..+.+.|++++++|+|||+++|++. .+.+.+|++++|.+ |+
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999777999999999985 46677999999974 65
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=331.16 Aligned_cols=197 Identities=35% Similarity=0.524 Sum_probs=169.0
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc--ccccceEEEEccCCCCCCCCCH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ--ETFARVSGYCEQTDIHSPNITV 951 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 951 (1449)
+.+|+|+|+++++| +++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 46999999999999 9999999999999999999998654 58999999987532 2345679999999999999999
Q ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000517 952 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031 (1449)
Q Consensus 952 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgL 1031 (1449)
.||+.+....+. ....+..+.++++++.++|.+..++.++ .||||||||++||++|+.+|++|+|||||+||
T Consensus 90 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~L 161 (211)
T cd03264 90 REFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161 (211)
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999988655432 2223345678899999999887777654 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1032 DARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1032 D~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
|+.++..+.+.|+++++ +.|||+++|++. .+.+.+|++++|+ +|++++.|
T Consensus 162 D~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~-~g~i~~~g 211 (211)
T cd03264 162 DPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211 (211)
T ss_pred CHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 99999999999999976 599999999986 4667899999998 58988765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=345.07 Aligned_cols=219 Identities=23% Similarity=0.344 Sum_probs=179.5
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|+++.++... .....+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 56777777653210 0113599999999999999999999999999999999998765 4799999986531
Q ss_pred ---------------------------cccccceEEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHH
Q 000517 929 ---------------------------QETFARVSGYCEQTD-IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 980 (1449)
Q Consensus 929 ---------------------------~~~~~~~~gyv~Q~d-~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l 980 (1449)
....++.+|||+|++ ..+...||+|++.|+.... ....++..+++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123467799999985 3344579999999875432 234455567789999
Q ss_pred HHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 000517 981 ETIELD-AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQ 1059 (1449)
Q Consensus 981 ~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 1059 (1449)
+.+||. +..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 5667664 4799999999999999999999999999999999999999999999998779999999999
Q ss_pred ccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1060 PSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1060 p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
++ .+.+.+|++++|. +|++++.|++.
T Consensus 225 ~~-~~~~~adrv~vl~-~G~i~~~g~~~ 250 (305)
T PRK13651 225 LD-NVLEWTKRTIFFK-DGKIIKDGDTY 250 (305)
T ss_pred HH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 76 4778899999997 58999999863
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=330.23 Aligned_cols=200 Identities=27% Similarity=0.466 Sum_probs=167.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-CceEEEEcCCCccCCCCCH
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTV 262 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1449)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 35899999999999999999999999999999999999987 9999999988754322 4579999999888999999
Q ss_pred HHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccccc
Q 000517 263 RETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG 342 (1449)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 342 (1449)
+||+.++....+.. ..+ .+..++.+++.+||++..++.+++
T Consensus 90 ~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (213)
T cd03259 90 AENIAFGLKLRGVP----------KAE------------------------IRARVRELLELVGLEGLLNRYPHE----- 130 (213)
T ss_pred HHHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhhcChhh-----
Confidence 99998865432110 000 011245678899998888887765
Q ss_pred CChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeE
Q 000517 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422 (1449)
Q Consensus 343 lSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~i 422 (1449)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++ +|..+++.+++|+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYV-THDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE-ecCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876446676665 4556788899999999999999
Q ss_pred EEec
Q 000517 423 VYHG 426 (1449)
Q Consensus 423 v~~G 426 (1449)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=337.47 Aligned_cols=203 Identities=25% Similarity=0.402 Sum_probs=173.2
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc----ccccceEEEEccCCCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ----ETFARVSGYCEQTDIHSPNI 949 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~d~~~~~l 949 (1449)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL 93 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccC
Confidence 4699999999999999999999999999999999998654 58999999987532 12356799999999888889
Q ss_pred CHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000517 950 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 1029 (1449)
Q Consensus 950 Tv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTs 1029 (1449)
||.||+.+...++. ....+..+..++++++.+++.+..+..+ +.||||||||++||++|+.+|++|+|||||+
T Consensus 94 tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (241)
T PRK10895 94 SVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEPFA 166 (241)
T ss_pred cHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999987643321 1223344567889999999987766654 3799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1030 GLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1030 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
|||+.++..+.+.++++++.|+|||+++|++. ++.+.+|++++|. +|++++.|+.+
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~-~G~i~~~~~~~ 222 (241)
T PRK10895 167 GVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVS-QGHLIAHGTPT 222 (241)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEe-CCeEEeeCCHH
Confidence 99999999999999998877999999999985 5778899999997 58999998863
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=342.75 Aligned_cols=218 Identities=28% Similarity=0.404 Sum_probs=179.2
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|+++.++.. ....+.+|+|||++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 4677777765311 00113599999999999999999999999999999999998765 5899999998753
Q ss_pred c-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000517 929 Q-------ETFARVSGYCEQTD--IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-AIKDSLVGIPGV 998 (1449)
Q Consensus 929 ~-------~~~~~~~gyv~Q~d--~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 998 (1449)
. ..+++.+|||+|++ .++ ..||.|++.|..... ..+..+.++++.++++.++|. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~----- 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLF-EETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSP----- 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcc-cchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCc-----
Confidence 1 23567899999986 344 469999999875432 223455567789999999996 4556553
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCc
Q 000517 999 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGG 1078 (1449)
Q Consensus 999 ~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG 1078 (1449)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~-~G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLE-KG 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CC
Confidence 479999999999999999999999999999999999999999999999877999999999985 5678899999997 58
Q ss_pred EEEEecCCC
Q 000517 1079 RIIYCGPLG 1087 (1449)
Q Consensus 1079 ~~v~~G~~~ 1087 (1449)
++++.|++.
T Consensus 221 ~i~~~g~~~ 229 (288)
T PRK13643 221 HIISCGTPS 229 (288)
T ss_pred EEEEECCHH
Confidence 999999863
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=331.12 Aligned_cols=195 Identities=26% Similarity=0.389 Sum_probs=166.8
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-----ccccceEEEEccCCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-----ETFARVSGYCEQTDIHSPN 948 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-----~~~~~~~gyv~Q~d~~~~~ 948 (1449)
+.+|+++|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++.+++.
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 4699999999999999999999999999999999998654 58999999987521 2346789999999999999
Q ss_pred CCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000517 949 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028 (1449)
Q Consensus 949 lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPT 1028 (1449)
+|+.||+.+...... ....+...+.++++++.+|+.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 91 ~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~ 163 (213)
T cd03262 91 LTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMNPKVMLFDEPT 163 (213)
T ss_pred CcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999999987643111 1223344567889999999988777765 379999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcE
Q 000517 1029 TGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079 (1449)
Q Consensus 1029 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~ 1079 (1449)
+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 164 ~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 164 SALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 999999999999999999877999999999986 56778999999974 65
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=333.29 Aligned_cols=200 Identities=25% Similarity=0.352 Sum_probs=164.4
Q ss_pred eeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc------ccccceEEEEccCC--CCC
Q 000517 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ------ETFARVSGYCEQTD--IHS 946 (1449)
Q Consensus 875 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~~~~~~gyv~Q~d--~~~ 946 (1449)
.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.. ..+++.++|++|++ .+.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 699999999999999999999999999999999998654 58999999987532 23456899999998 456
Q ss_pred CCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000517 947 PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1025 (1449)
Q Consensus 947 ~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLD 1025 (1449)
+.+||+||+.+....... ....+.....++++++.+++. +..+..+ ..||||||||++|||+|+.+|++|+||
T Consensus 97 ~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLD 170 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRYP-----HELSGGQRQRVAIARALALNPKLLIAD 170 (228)
T ss_pred CcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCCc-----hhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 789999999876543321 111111122235789999995 4556554 379999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1026 EPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1026 EPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
|||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|+++..|
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 228 (228)
T cd03257 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMY-AGKIVEEG 228 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEe-CCEEEecC
Confidence 999999999999999999999765 899999999986 4666899999997 58988754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=345.88 Aligned_cols=219 Identities=23% Similarity=0.339 Sum_probs=179.5
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++++|+++.++... .....+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEc
Confidence 477888887664210 0123599999999999999999999999999999999998765 589999999764
Q ss_pred cc-------------------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc
Q 000517 928 VQ-------------------ETFARVSGYCEQTD--IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD 986 (1449)
Q Consensus 928 ~~-------------------~~~~~~~gyv~Q~d--~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~ 986 (1449)
.. ..+++.+|||+|++ .+++ .||+||+.|+.... ..+.++..+++.++++.+||.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 23567899999986 3554 59999998864322 223444556788999999996
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHH
Q 000517 987 -AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIF 1065 (1449)
Q Consensus 987 -~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~ 1065 (1449)
+..++.+ ..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ .+.
T Consensus 167 ~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 4555543 479999999999999999999999999999999999999999999999877999999999976 467
Q ss_pred HhcCeEEEEecCcEEEEecCCC
Q 000517 1066 EAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1066 ~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
+.+|++++|. +|+++..|+..
T Consensus 241 ~~adri~vl~-~G~i~~~g~~~ 261 (320)
T PRK13631 241 EVADEVIVMD-KGKILKTGTPY 261 (320)
T ss_pred HhCCEEEEEE-CCEEEEeCCHH
Confidence 8899999998 58999999863
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=333.30 Aligned_cols=209 Identities=25% Similarity=0.412 Sum_probs=173.0
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-CceEEEEcCCCccCCCCCHH
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTVR 263 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 263 (1449)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCHH
Confidence 5899999999999999999999999999999999999987 9999999988754322 45799999999888999999
Q ss_pred HHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccC
Q 000517 264 ETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343 (1449)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGl 343 (1449)
||+.++....+...+. ...+ ....++.+++.+||++..++.+++ |
T Consensus 93 e~l~~~~~~~~~~~~~------~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----L 137 (239)
T cd03296 93 DNVAFGLRVKPRSERP------PEAE------------------------IRAKVHELLKLVQLDWLADRYPAQ-----L 137 (239)
T ss_pred HHHhhhhhhccccccC------CHHH------------------------HHHHHHHHHHHcCChhhhhcChhh-----C
Confidence 9999865432110000 0000 011245678999998877877765 9
Q ss_pred ChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEE
Q 000517 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423 (1449)
Q Consensus 344 SGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv 423 (1449)
||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|+ ..++.+.+|+|++|++|+++
T Consensus 138 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~-~~~~~~~~d~i~~l~~G~i~ 216 (239)
T cd03296 138 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD-QEEALEVADRVVVMNKGRIE 216 (239)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999999999876446777776554 56788999999999999999
Q ss_pred EecChhhHH
Q 000517 424 YHGPQDHVL 432 (1449)
Q Consensus 424 ~~G~~~~~~ 432 (1449)
+.|+.+++.
T Consensus 217 ~~~~~~~~~ 225 (239)
T cd03296 217 QVGTPDEVY 225 (239)
T ss_pred EecCHHHHh
Confidence 999987763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=330.52 Aligned_cols=205 Identities=29% Similarity=0.395 Sum_probs=172.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC--CCceEEEEcCCCccCCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV--PPKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1449)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 35899999999999999999999999999999999999987 999999998764321 1357999999998999999
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|+||+.+.....+... .+ ....++.+++.+||++..++.+++
T Consensus 90 v~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~---- 131 (220)
T cd03265 90 GWENLYIHARLYGVPG----------AE------------------------RRERIDELLDFVGLLEAADRLVKT---- 131 (220)
T ss_pred HHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCHHHhhCChhh----
Confidence 9999998754332110 00 011346689999998888888776
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+..++|+|++ +|..+++.+++|++++|.+|+
T Consensus 132 -LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~-tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 132 -YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT-THYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999876446666665 566778889999999999999
Q ss_pred EEEecChhhH
Q 000517 422 IVYHGPQDHV 431 (1449)
Q Consensus 422 iv~~G~~~~~ 431 (1449)
++..|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=334.06 Aligned_cols=200 Identities=29% Similarity=0.452 Sum_probs=170.3
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc--ccccceEEEEccCCCCCCCCCH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ--ETFARVSGYCEQTDIHSPNITV 951 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 951 (1449)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 4699999999999999999999999999999999998654 58999999986532 1223579999999988889999
Q ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000517 952 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031 (1449)
Q Consensus 952 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgL 1031 (1449)
+||+.+....+ ........+.++++++.+||.+..++.++ .||||||||++|||+|+.+|++++|||||+||
T Consensus 92 ~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEP~~~L 163 (236)
T TIGR03864 92 RQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGL 163 (236)
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCC
Confidence 99998765432 12233445678899999999887777654 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1032 DARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1032 D~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|+.++..+.+.|+++++ .|+|||+++|+++. + ..+|++++|. +|++++.|+.
T Consensus 164 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~-~G~i~~~~~~ 216 (236)
T TIGR03864 164 DPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLH-RGRVLADGAA 216 (236)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEe-CCeEEEeCCH
Confidence 99999999999999975 58999999999863 4 4599999997 5899998875
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=344.61 Aligned_cols=204 Identities=21% Similarity=0.296 Sum_probs=173.7
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc------ccccceEEEEccCC--CC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ------ETFARVSGYCEQTD--IH 945 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~~~~~~gyv~Q~d--~~ 945 (1449)
..+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++.. ..+++.++||+|++ .+
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l 111 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASL 111 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhc
Confidence 5699999999999999999999999999999999998765 58999999987532 12456799999997 57
Q ss_pred CCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000517 946 SPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 1024 (1449)
Q Consensus 946 ~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illL 1024 (1449)
+|.+||.|++.+...... ...+.++.++.+.++++.++|. +..++.. ..||||||||++||+||+.+|++|++
T Consensus 112 ~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p-----~~LSgG~~QRv~iArAL~~~P~llil 185 (331)
T PRK15079 112 NPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRYP-----HEFSGGQCQRIGIARALILEPKLIIC 185 (331)
T ss_pred CCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 889999999988654321 1234455667788999999994 3555553 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
||||+|||+.++..+++.|+++.++ |.|+|++|||++ .+.+.+|++++|. +|++++.|+..
T Consensus 186 DEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~-~G~ive~g~~~ 247 (331)
T PRK15079 186 DEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMY-LGHAVELGTYD 247 (331)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 9999999999999999999999764 999999999986 4667899999997 58999999863
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=330.86 Aligned_cols=196 Identities=25% Similarity=0.328 Sum_probs=167.4
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---c---cccceEEEEccCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---E---TFARVSGYCEQTDIHSP 947 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~---~~~~~~gyv~Q~d~~~~ 947 (1449)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... . .+++.++|++|++.+++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 4699999999999999999999999999999999998654 58999999986532 1 24567999999998888
Q ss_pred CCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000517 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1027 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEP 1027 (1449)
..|+.||+.+....+ ....++..+.++++++.+++.+..++.+ ..||||||||++||+||+.+|++|+||||
T Consensus 93 ~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 164 (222)
T PRK10908 93 DRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLSGGEQQRVGIARAVVNKPAVLLADEP 164 (222)
T ss_pred cccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999998865433 1223344456788999999988777664 37999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEE
Q 000517 1028 TTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081 (1449)
Q Consensus 1028 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v 1081 (1449)
|+|||+.++..+.+.|++++++|.|||++||+++ ++...+|++++|. +|+++
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~ 216 (222)
T PRK10908 165 TGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLS-DGHLH 216 (222)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEc
Confidence 9999999999999999999777899999999986 4667789999998 47764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=329.58 Aligned_cols=192 Identities=29% Similarity=0.416 Sum_probs=163.0
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---ccccceEEEEccCCC-CCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDI-HSPNI 949 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~-~~~~l 949 (1449)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 4699999999999999999999999999999999998654 58999999986532 234567999999974 36678
Q ss_pred CHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000517 950 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 1029 (1449)
Q Consensus 950 Tv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTs 1029 (1449)
|++||+.+....+ ........+.++++++.++|.+..++.++ .||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPF-----TLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998765332 12233344568899999999877776653 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEec
Q 000517 1030 GLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 1030 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~ 1076 (1449)
|||+.++..+.+.|++++++|+|||++||++. ++...+|++++|.+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~ 209 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED 209 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 99999999999999999877999999999986 56677999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=330.18 Aligned_cols=198 Identities=23% Similarity=0.376 Sum_probs=171.4
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCCCCCCHHH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEE 953 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~e 953 (1449)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..... ++.++|++|++.+++.+|++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 4699999999999999999999999999999999998654 5899999998754322 257899999998888899999
Q ss_pred HHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000517 954 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 1033 (1449)
Q Consensus 954 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~ 1033 (1449)
|+.+....+. .. ++.+.++++.+||.+..+..++ .||||||||++||++++.+|++|+|||||+|||+
T Consensus 90 ~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 90 NLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKAK-----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred HHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhHh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 9987654331 11 2357889999999887777653 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCC
Q 000517 1034 RAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGK 1088 (1449)
Q Consensus 1034 ~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~ 1088 (1449)
.++..+++.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|++.+
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~~ 210 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIIS-EGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEe-CCEEEEecChhh
Confidence 9999999999999877999999999986 5678899999997 589999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=335.44 Aligned_cols=202 Identities=25% Similarity=0.344 Sum_probs=170.3
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCccCcc-----ccccceEEEEccCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISGYPKVQ-----ETFARVSGYCEQTDIH 945 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G~~~~~-----~~~~~~~gyv~Q~d~~ 945 (1449)
..+|+|+|++|++||+++|+|+||||||||+++|+|...+. ..+|+|.++|.+... ...++.++|++|++.+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 45999999999999999999999999999999999986542 127999999987532 2345679999999888
Q ss_pred CCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000517 946 SPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSI 1021 (1449)
Q Consensus 946 ~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~i 1021 (1449)
++ .|++||+.+....+. ........+.++++++.+||. +..++.+ ..||||||||++|||+|+.+|++
T Consensus 94 ~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~l 165 (247)
T TIGR00972 94 FP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSA-----LGLSGGQQQRLCIARALAVEPEV 165 (247)
T ss_pred CC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCE
Confidence 88 999999988654431 112344456788999999997 5555543 47999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1022 IFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1022 llLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 166 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 227 (247)
T TIGR00972 166 LLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFY-DGELVEYGPT 227 (247)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999876 589999999986 5778899999998 5899999875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=340.71 Aligned_cols=216 Identities=24% Similarity=0.344 Sum_probs=180.8
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|+++.++.. +...+|+|+|++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (279)
T PRK13650 5 IEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLLT 72 (279)
T ss_pred EEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECC
Confidence 6677777665311 123599999999999999999999999999999999998765 5899999998753
Q ss_pred c---ccccceEEEEccCC-CCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000517 929 Q---ETFARVSGYCEQTD-IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTE 1004 (1449)
Q Consensus 929 ~---~~~~~~~gyv~Q~d-~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1004 (1449)
. ...++.+||++|++ ..++..||+||+.|..... ....++..+.++++++.+||.+..+..++ .||||
T Consensus 73 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgG 144 (279)
T PRK13650 73 EENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPA-----RLSGG 144 (279)
T ss_pred cCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHH
Confidence 2 23556799999997 3667789999999865432 23344556778999999999987777754 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEe
Q 000517 1005 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYC 1083 (1449)
Q Consensus 1005 qrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~ 1083 (1449)
||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..+|++++|. +|+++..
T Consensus 145 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~-~G~i~~~ 221 (279)
T PRK13650 145 QKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMK-NGQVEST 221 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEEEE
Confidence 999999999999999999999999999999999999999999875 999999999976 34 5799999997 5899999
Q ss_pred cCCC
Q 000517 1084 GPLG 1087 (1449)
Q Consensus 1084 G~~~ 1087 (1449)
|+++
T Consensus 222 g~~~ 225 (279)
T PRK13650 222 STPR 225 (279)
T ss_pred CCHH
Confidence 9863
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=341.16 Aligned_cols=217 Identities=23% Similarity=0.358 Sum_probs=178.2
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|+++.++... ...+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 56777776653110 0123599999999999999999999999999999999998765 5899999998753
Q ss_pred c-------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000517 929 Q-------ETFARVSGYCEQTD--IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-AIKDSLVGIPGV 998 (1449)
Q Consensus 929 ~-------~~~~~~~gyv~Q~d--~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 998 (1449)
. ..+++.+|||+|++ .+++ .||.||+.|..... ....++..+++.++++.+||. +..++.+
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSP----- 143 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----
Confidence 2 23567899999986 3444 59999999865332 223445566789999999996 5666654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 999 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 999 ~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|. +
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~-~ 221 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMK-E 221 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-C
Confidence 47999999999999999999999999999999999999999999999975 4899999999976 4678899999998 5
Q ss_pred cEEEEecCC
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~v~~G~~ 1086 (1449)
|++++.|++
T Consensus 222 G~i~~~g~~ 230 (286)
T PRK13646 222 GSIVSQTSP 230 (286)
T ss_pred CEEEEECCH
Confidence 899999986
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=336.51 Aligned_cols=214 Identities=23% Similarity=0.295 Sum_probs=178.3
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 6 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 70 (257)
T PRK10619 6 LNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTIN 70 (257)
T ss_pred EEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcc
Confidence 56677766542 34699999999999999999999999999999999998654 5799999997642
Q ss_pred c----------------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccc-cc
Q 000517 929 Q----------------ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK-DS 991 (1449)
Q Consensus 929 ~----------------~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-~~ 991 (1449)
. ..+++.++|++|++.+++.+|++||+.+...... ........+++.++++.+||.+.. +.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~ 148 (257)
T PRK10619 71 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK 148 (257)
T ss_pred cccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 1 2345679999999999999999999987542111 123344556788999999997653 54
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeE
Q 000517 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDEL 1071 (1449)
Q Consensus 992 ~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~ 1071 (1449)
.+ ..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||+++ ++...+|++
T Consensus 149 ~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i 222 (257)
T PRK10619 149 YP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 222 (257)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 43 479999999999999999999999999999999999999999999999877999999999986 466779999
Q ss_pred EEEecCcEEEEecCC
Q 000517 1072 ILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1072 ~~l~~gG~~v~~G~~ 1086 (1449)
++|. .|++++.|+.
T Consensus 223 ~~l~-~G~i~~~~~~ 236 (257)
T PRK10619 223 IFLH-QGKIEEEGAP 236 (257)
T ss_pred EEEE-CCEEEEeCCH
Confidence 9998 5899999875
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=345.02 Aligned_cols=229 Identities=24% Similarity=0.390 Sum_probs=184.5
Q ss_pred cCCCCCCceEEEeeeEEEEEeeecCCCCCCCchhhhhhhhhccccccCccccccccccccceeeEEeCCeEEEEEcCCCC
Q 000517 129 VGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGC 208 (1449)
Q Consensus 129 ~g~~~p~v~v~~~~L~v~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 208 (1449)
..+..|.=.|+|+|++.+-.. +++||+++||+|++||.+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~~---------------------------------k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYGP---------------------------------KRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeCC---------------------------------CCceecceeEEecCCCEEEEECCCCC
Confidence 466677777999988754322 23599999999999999999999999
Q ss_pred cHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCCCHHHHHHHHHHccCCCCchhhhhHh
Q 000517 209 GKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEV 285 (1449)
Q Consensus 209 GKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 285 (1449)
||||++++|.+.++ . +|+|.+||.++.+... |+.+|||||+..+| +-||.+|+.++.. ...++...++
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn~----sas~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGNP----SASDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCCC----CcCHHHHHHH
Confidence 99999999999998 4 8999999999877654 67899999976655 5699999998642 1111222222
Q ss_pred cHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCChhhhhhHHHHHHHhCCCcEEE
Q 000517 286 SRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365 (1449)
Q Consensus 286 ~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vll 365 (1449)
|++ .+. .|.+ ..|++..+|.||+.+. -|||||||||++|||++.+|+|++
T Consensus 461 ~k~---------------------a~~-----hd~i---~~l~~GY~T~VGerG~-~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 CKR---------------------AGL-----HDVI---SRLPDGYQTLVGERGL-MLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HHH---------------------cCc-----HHHH---HhccccchhhHhhccc-ccccchHHHHHHHHHHhcCCCeEE
Confidence 221 111 1222 2388999999998432 299999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEEEecChhhHHH
Q 000517 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLA 433 (1449)
Q Consensus 366 LDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv~~G~~~~~~~ 433 (1449)
+|||||.||+.|..++++.+.+. ..++|+|+..|.. .+..-||+|++|++|++...|++++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999884 3689999887654 5778999999999999999999999986
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=350.12 Aligned_cols=206 Identities=23% Similarity=0.355 Sum_probs=176.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-------CceEEEEcCCCcc
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-------PKTSAYISQNDLH 256 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1449)
..+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 45899999999999999999999999999999999999998 9999999998765432 2479999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccc
Q 000517 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVG 336 (1449)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 336 (1449)
++++||+||+.|+....+... .+ ....++++++.+||++..++.+.
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~----------~~------------------------~~~~~~e~L~~~gL~~~~~~~~~ 163 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINA----------EE------------------------RREKALDALRQVGLENYAHSYPD 163 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCChhhhcCcc
Confidence 999999999999765433210 00 01124668999999888888876
Q ss_pred ccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEE
Q 000517 337 NAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416 (1449)
Q Consensus 337 ~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~l 416 (1449)
+ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..++|+|++. |..+++.+++|+|++
T Consensus 164 ~-----LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivT-Hd~~~~~~~~Dri~v 237 (400)
T PRK10070 164 E-----LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS-HDLDEAMRIGDRIAI 237 (400)
T ss_pred c-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEE-CCHHHHHHhCCEEEE
Confidence 5 9999999999999999999999999999999999999999999998765567776654 556788999999999
Q ss_pred EeCCeEEEecChhhHH
Q 000517 417 MAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (1449)
|++|+++..|+++++.
T Consensus 238 L~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 238 MQNGEVVQVGTPDEIL 253 (400)
T ss_pred EECCEEEecCCHHHHH
Confidence 9999999999988774
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=339.14 Aligned_cols=216 Identities=26% Similarity=0.371 Sum_probs=180.4
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++++|+++.++ +++.+|+|+|++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEEC
Confidence 467788776542 124599999999999999999999999999999999998664 589999999875
Q ss_pred c-----cccccceEEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000517 928 V-----QETFARVSGYCEQTDI-HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGL 1001 (1449)
Q Consensus 928 ~-----~~~~~~~~gyv~Q~d~-~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 1001 (1449)
. ...+++.+||++|++. .+...||+||+.+..... ..+.....+.++++++.+||.+..++.++ .|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTH-----CL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcc-----cC
Confidence 2 1235678999999873 334689999998864322 22344445678999999999888777754 79
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEE
Q 000517 1002 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080 (1449)
Q Consensus 1002 SgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~ 1080 (1449)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|. +|++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~-~G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMK-EGRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999865 899999999986 4667899999997 5899
Q ss_pred EEecCCC
Q 000517 1081 IYCGPLG 1087 (1449)
Q Consensus 1081 v~~G~~~ 1087 (1449)
++.|+..
T Consensus 221 ~~~g~~~ 227 (283)
T PRK13636 221 ILQGNPK 227 (283)
T ss_pred EEeCCHH
Confidence 9999863
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=326.55 Aligned_cols=199 Identities=27% Similarity=0.442 Sum_probs=168.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-CceEEEEcCCCccCCCCCHH
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTVR 263 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 263 (1449)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 5899999999999999999999999999999999999987 9999999988754322 35799999999888899999
Q ss_pred HHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccC
Q 000517 264 ETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343 (1449)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGl 343 (1449)
||+.+.....+... .+ .+..++.+++.+||++..++.+++ |
T Consensus 91 ~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----L 131 (213)
T cd03301 91 DNIAFGLKLRKVPK----------DE------------------------IDERVREVAELLQIEHLLDRKPKQ-----L 131 (213)
T ss_pred HHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCHHHHhCChhh-----C
Confidence 99988754322100 00 011246678999998888888765 9
Q ss_pred ChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEE
Q 000517 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423 (1449)
Q Consensus 344 SGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv 423 (1449)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++. |..+++.+++|+|++|++|+++
T Consensus 132 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~s-H~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVT-HDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhcCeEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998765567777765 4556888999999999999999
Q ss_pred Eec
Q 000517 424 YHG 426 (1449)
Q Consensus 424 ~~G 426 (1449)
+.|
T Consensus 211 ~~g 213 (213)
T cd03301 211 QIG 213 (213)
T ss_pred ecC
Confidence 876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=336.26 Aligned_cols=206 Identities=21% Similarity=0.297 Sum_probs=175.2
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|++++++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEH
Confidence 367788776542 24599999999999999999999999999999999998654 489999999764
Q ss_pred ccccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000517 928 VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRK 1007 (1449)
Q Consensus 928 ~~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1007 (1449)
. ..++.++|++|++.+++.+||+||+.+.. + . ..++.+.++++.++|.+..+..+ ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~--~---~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGL--K---G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhcc--c---c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 2 34567999999998888899999998742 1 0 12356788999999988777664 379999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1008 RLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1008 Rl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ .+...+|++++|. +|++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~-~G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIE-EGKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999986 4677899999998 5899988765
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=337.37 Aligned_cols=217 Identities=22% Similarity=0.274 Sum_probs=178.3
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 6 l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 70 (255)
T PRK11300 6 LSVSGLMMRF-------------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQHIE 70 (255)
T ss_pred EEEeeEEEEE-------------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEECC
Confidence 5667776543 234699999999999999999999999999999999998654 5899999998753
Q ss_pred cc---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHhccC----------CCC--ChHHHHHHHHHHHHHcCCccccccc
Q 000517 929 QE---T-FARVSGYCEQTDIHSPNITVEESVIFSAWLRLA----------PEI--NSKTKAEFVNEVLETIELDAIKDSL 992 (1449)
Q Consensus 929 ~~---~-~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~----------~~~--~~~~~~~~v~~~l~~l~L~~~~~~~ 992 (1449)
.. . .+..++|++|++.+++.+||+||+.+....... ... ......+.++++++.+||.+..++.
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 150 (255)
T PRK11300 71 GLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ 150 (255)
T ss_pred CCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC
Confidence 21 1 234589999999999999999999986431110 000 1112335678899999998777776
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeE
Q 000517 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDEL 1071 (1449)
Q Consensus 993 vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~ 1071 (1449)
++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++
T Consensus 151 ~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i 224 (255)
T PRK11300 151 AG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRI 224 (255)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 54 79999999999999999999999999999999999999999999999775 899999999986 577889999
Q ss_pred EEEecCcEEEEecCCC
Q 000517 1072 ILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1072 ~~l~~gG~~v~~G~~~ 1087 (1449)
++|+ +|++++.|+.+
T Consensus 225 ~~l~-~g~i~~~~~~~ 239 (255)
T PRK11300 225 YVVN-QGTPLANGTPE 239 (255)
T ss_pred EEEE-CCeEEecCCHH
Confidence 9997 58999999864
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=329.62 Aligned_cols=195 Identities=27% Similarity=0.415 Sum_probs=164.8
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---cc---cc-ceEEEEccCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ET---FA-RVSGYCEQTDIHS 946 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~---~~-~~~gyv~Q~d~~~ 946 (1449)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... .. ++ +.++|++|++.++
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccC
Confidence 4699999999999999999999999999999999998654 58999999987532 11 22 5799999999888
Q ss_pred CCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000517 947 PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1026 (1449)
Q Consensus 947 ~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDE 1026 (1449)
+.+|++||+.+....+. .......+.+.++++.+||.+..++.++ .||||||||++|||+|+.+|++|+|||
T Consensus 96 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~illlDE 167 (221)
T TIGR02211 96 PDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRPS-----ELSGGERQRVAIARALVNQPSLVLADE 167 (221)
T ss_pred CCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 89999999988654331 2223344567899999999887777653 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEE
Q 000517 1027 PTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081 (1449)
Q Consensus 1027 PTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v 1081 (1449)
||+|||+.++..+.+.|++++++ |+|||++||+++ .+ +.+|++++|. +|+++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~-~G~i~ 220 (221)
T TIGR02211 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMK-DGQLF 220 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEe-CCEec
Confidence 99999999999999999999764 899999999986 34 5579999998 57765
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=337.44 Aligned_cols=181 Identities=22% Similarity=0.275 Sum_probs=139.9
Q ss_pred eeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCCCCCCHHHH
Q 000517 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEES 954 (1449)
Q Consensus 875 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~e~ 954 (1449)
+++.+++..++.-..++++|+||+||||+++++.|..++ ..|.+.+.+ |.+++|..|...-+..+.|.+-
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~~--------r~ri~~f~Qhhvd~l~~~v~~v 447 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRHP--------RLRIKYFAQHHVDFLDKNVNAV 447 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeecc--------cceecchhHhhhhHHHHHhHHH
Confidence 688999999999999999999999999999999996554 467665544 3568999997654444555442
Q ss_pred HHHHHHhccCCCCChHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000517 955 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 1033 (1449)
Q Consensus 955 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~ 1033 (1449)
.+-...+ +.. .++.+++-+..+||+.- +... +.+||||||-||++|.....+|.+|+|||||++||-
T Consensus 448 -d~~~~~~--pG~----~~ee~r~hl~~~Gl~g~la~~s-----i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~ 515 (582)
T KOG0062|consen 448 -DFMEKSF--PGK----TEEEIRRHLGSFGLSGELALQS-----IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDR 515 (582)
T ss_pred -HHHHHhC--CCC----CHHHHHHHHHhcCCCchhhhcc-----ccccCCcchhHHHHHHHhcCCCcEEEecCCCccccH
Confidence 2322222 221 23446778899999752 2211 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEE
Q 000517 1034 RAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIY 1082 (1449)
Q Consensus 1034 ~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~ 1082 (1449)
.+-..+-++|++. +..||++||+-+. +-..|+++.+..+ |++.-
T Consensus 516 dsl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~-g~vt~ 559 (582)
T KOG0062|consen 516 DSLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVED-GKVTP 559 (582)
T ss_pred HHHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcC-CcEEe
Confidence 9999999999986 5579999999664 6678899999975 66543
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=331.97 Aligned_cols=205 Identities=26% Similarity=0.368 Sum_probs=173.0
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC------CceEEEEcCCCccCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP------PKTSAYISQNDLHIA 258 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 258 (1449)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999997 9999999998754321 356999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 259 EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
.+||+||+.+.....+.. . .+ ....++.+++.+||++..++.+.+
T Consensus 96 ~~t~~e~l~~~~~~~~~~-~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~- 140 (233)
T cd03258 96 SRTVFENVALPLEIAGVP-K---------AE------------------------IEERVLELLELVGLEDKADAYPAQ- 140 (233)
T ss_pred CCcHHHHHHHHHHHcCCC-H---------HH------------------------HHHHHHHHHHHCCChhhhhcChhh-
Confidence 999999998865432210 0 00 011246678999998877777765
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.| ..+++.+++|++++|+
T Consensus 141 ----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH-~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 141 ----LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITH-EMEVVKRICDRVAVME 215 (233)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999987654677776655 4567889999999999
Q ss_pred CCeEEEecChhhHH
Q 000517 419 EGKIVYHGPQDHVL 432 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1449)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999887763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=333.57 Aligned_cols=207 Identities=22% Similarity=0.285 Sum_probs=168.7
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---cc-ccceEEEEccCCCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ET-FARVSGYCEQTDIHSPNI 949 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~-~~~~~gyv~Q~d~~~~~l 949 (1449)
+.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+... .. .+..++|++|++.+++.+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 46999999999999999999999999999999999974111358999999987532 12 233489999999999999
Q ss_pred CHHHHHHHHHHhccCC----CCChHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000517 950 TVEESVIFSAWLRLAP----EINSKTKAEFVNEVLETIELD-AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 1024 (1449)
Q Consensus 950 Tv~e~l~f~~~lr~~~----~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illL 1024 (1449)
|++|++.+........ ........+.++++++.++|. +..+..++ ..||||||||++||++|+.+|++|+|
T Consensus 93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llll 168 (243)
T TIGR01978 93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAIL 168 (243)
T ss_pred CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 9999998764322110 112233346688999999997 45555542 14999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHh-cCeEEEEecCcEEEEecCC
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEA-FDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~-~d~~~~l~~gG~~v~~G~~ 1086 (1449)
||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|. +|++++.|+.
T Consensus 169 DEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~-~G~i~~~g~~ 229 (243)
T TIGR01978 169 DEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLL-DGRIVKSGDV 229 (243)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEe-CCEEEEecCH
Confidence 9999999999999999999999877899999999986 45555 79999997 5899999875
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=333.66 Aligned_cols=214 Identities=25% Similarity=0.324 Sum_probs=175.6
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 924 (1449)
.+.++|+++.+ +++.+|+|+|++|++||++||+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWY-------------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEe-------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 46777777643 2345999999999999999999999999999999999976531 2589999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc----ccccccccC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----AIKDSLVGI 995 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 995 (1449)
.+... ..+++.+||++|++.+++ .|++||+.+....+ ....+..++.++++++.+++. +..++.+
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 152 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPA-- 152 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh--
Confidence 87532 234567999999988877 89999999865432 122334455688899999984 3334443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++.+.+|++++|.
T Consensus 153 ---~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 153 ---LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999864 899999999986 4667899999997
Q ss_pred cCcEEEEecCC
Q 000517 1076 TGGRIIYCGPL 1086 (1449)
Q Consensus 1076 ~gG~~v~~G~~ 1086 (1449)
+|++++.|++
T Consensus 228 -~G~i~~~~~~ 237 (258)
T PRK14268 228 -MGELIEFGQT 237 (258)
T ss_pred -CCEEEEeCCH
Confidence 5899999875
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=340.74 Aligned_cols=202 Identities=25% Similarity=0.327 Sum_probs=171.4
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-------ccccceEEEEccCCC-C
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-------ETFARVSGYCEQTDI-H 945 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~~gyv~Q~d~-~ 945 (1449)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++. .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQ 97 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECccccccchHHHHHhceEEEEeChhhh
Confidence 4599999999999999999999999999999999998765 58999999987531 234567999999862 2
Q ss_pred CCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000517 946 SPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 1024 (1449)
Q Consensus 946 ~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illL 1024 (1449)
+..+||.||+.|..... ....+...++++++++.+||. +..++.++ .||||||||++||++|+.+|++|+|
T Consensus 98 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~LSgGq~qrl~laral~~~p~lLlL 169 (287)
T PRK13641 98 LFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPF-----ELSGGQMRRVAIAGVMAYEPEILCL 169 (287)
T ss_pred hccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 33589999998765432 223445556789999999997 56677654 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
||||+|||+.++..+.+.|+++++.|.|||++||+++ ++.+.+|++++|+ +|++++.|+..
T Consensus 170 DEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~-~G~i~~~g~~~ 230 (287)
T PRK13641 170 DEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLE-HGKLIKHASPK 230 (287)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 9999999999999999999999777999999999986 5778899999997 58999999853
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=341.97 Aligned_cols=205 Identities=27% Similarity=0.376 Sum_probs=173.8
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC--CCceEEEEcCCCccCCCCCH
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV--PPKTSAYISQNDLHIAEMTV 262 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 262 (1449)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 18 ~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (303)
T TIGR01288 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTV 94 (303)
T ss_pred EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcH
Confidence 5899999999999999999999999999999999999997 999999998864321 24679999999988999999
Q ss_pred HHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccccc
Q 000517 263 RETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG 342 (1449)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 342 (1449)
+||+.+.....+... .+ ....++.+++.+||++..++.+++
T Consensus 95 ~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~ll~~~~l~~~~~~~~~~----- 135 (303)
T TIGR01288 95 RENLLVFGRYFGMST----------RE------------------------IEAVIPSLLEFARLESKADVRVAL----- 135 (303)
T ss_pred HHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHCCChhHhcCchhh-----
Confidence 999987554322100 00 001245678899999888888876
Q ss_pred CChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeE
Q 000517 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422 (1449)
Q Consensus 343 lSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~i 422 (1449)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|++++. |..+++.++||+|++|++|++
T Consensus 136 LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~s-H~~~~~~~~~d~i~~l~~G~i 213 (303)
T TIGR01288 136 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTT-HFMEEAERLCDRLCVLESGRK 213 (303)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEC-CCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999875 466766654 556788899999999999999
Q ss_pred EEecChhhHHH
Q 000517 423 VYHGPQDHVLA 433 (1449)
Q Consensus 423 v~~G~~~~~~~ 433 (1449)
++.|+.+++.+
T Consensus 214 ~~~g~~~~~~~ 224 (303)
T TIGR01288 214 IAEGRPHALID 224 (303)
T ss_pred EEEcCHHHHHh
Confidence 99999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=332.98 Aligned_cols=201 Identities=25% Similarity=0.371 Sum_probs=171.3
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc---------cccccceEEEEccCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV---------QETFARVSGYCEQTDI 944 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~---------~~~~~~~~gyv~Q~d~ 944 (1449)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.. ....++.++|++|++.
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 4699999999999999999999999999999999998654 5899999998642 1234567999999999
Q ss_pred CCCCCCHHHHHHHHH-HhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000517 945 HSPNITVEESVIFSA-WLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIF 1023 (1449)
Q Consensus 945 ~~~~lTv~e~l~f~~-~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~ill 1023 (1449)
+++.+|+.||+.+.. ... ........+.+.++++.+||.+..++.++ .||||||||++|||+|+.+|++++
T Consensus 93 ~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lli 164 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFPL-----HLSGGQQQRVAIARALMMEPQVLL 164 (242)
T ss_pred ccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999997532 221 12233345678899999999887777653 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1024 MDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1024 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|||||+|||+.++..+.+.|+++.++|+|+|+++|++. ++.+.+|++++|. +|++++.|+.
T Consensus 165 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 225 (242)
T PRK11124 165 FDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYME-NGHIVEQGDA 225 (242)
T ss_pred EcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCH
Confidence 99999999999999999999999777999999999986 5667899999998 5899999875
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=306.15 Aligned_cols=206 Identities=31% Similarity=0.479 Sum_probs=172.1
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCC---ceEEEEcCCCccCCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP---KTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lT 261 (1449)
.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|++.+||++++.+.+. +..+..||+..+-...|
T Consensus 15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 4899999999999999999999999999999999999998 99999999999877552 56789999988878899
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|+|-+.++..-.+.+.. |.. +...++.+|...++.+.+.... +
T Consensus 92 v~eVV~mGr~p~~~g~~-----------------~~e---------------~~~i~~~ala~~d~~~la~R~y-----~ 134 (259)
T COG4559 92 VQEVVQMGRIPHRSGRE-----------------PEE---------------DERIAAQALAATDLSGLAGRDY-----R 134 (259)
T ss_pred HHHHHHhcccccccCCC-----------------chh---------------hHHHHHHHHHHcChhhhhccch-----h
Confidence 99999998654332211 000 1123456677777777766554 3
Q ss_pred cCChhhhhhHHHHHHHhC------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEE
Q 000517 342 GISGGQKKRLTTGEMIVG------PTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~------~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~ 415 (1449)
.|||||||||.+||.|+. ++++||||||||+||......+++..|++++. + ..|+.++|+..-...++|+|+
T Consensus 135 ~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g-~~V~~VLHDLNLAA~YaDriv 212 (259)
T COG4559 135 TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-G-GAVLAVLHDLNLAAQYADRIV 212 (259)
T ss_pred hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-C-CcEEEEEccchHHHHhhheee
Confidence 499999999999999974 44699999999999999999999999999985 3 455566788999999999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000517 416 LMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1449)
+|.+||++..|++++++
T Consensus 213 ll~~Grv~a~g~p~~vl 229 (259)
T COG4559 213 LLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeCCeEeecCCHHHhc
Confidence 99999999999998876
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=324.50 Aligned_cols=222 Identities=26% Similarity=0.392 Sum_probs=193.7
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-------CceEEEEcCCCc
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-------PKTSAYISQNDL 255 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 255 (1449)
...-++|+|+.|+.||+..|||-||||||||+++|.++.+|+ +|+|.++|.++..... ++.+++|+|...
T Consensus 40 ~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 40 LVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred cEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 345789999999999999999999999999999999999998 9999999998866542 467999999999
Q ss_pred cCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccc
Q 000517 256 HIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMV 335 (1449)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 335 (1449)
++|+.||.||..|+.+.+|.+..+ | +.+..+.|+..||+..++.++
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~e-------r---------------------------~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKAE-------R---------------------------EERALEALELVGLEGYADKYP 162 (386)
T ss_pred cccchhHhhhhhcceeecCCCHHH-------H---------------------------HHHHHHHHHHcCchhhhhcCc
Confidence 999999999999999998865321 1 123466899999999999998
Q ss_pred cccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEE
Q 000517 336 GNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415 (1449)
Q Consensus 336 g~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~ 415 (1449)
.+ ||||+||||.|||||+.+|+|||||||+|+|||--+.++.+-|.++.+..++|+|. ++|+.+|.+++.|||.
T Consensus 163 ~e-----LSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvF-itHDLdEAlriG~rIa 236 (386)
T COG4175 163 NE-----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVF-ITHDLDEALRIGDRIA 236 (386)
T ss_pred cc-----ccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEE-EecCHHHHHhccceEE
Confidence 76 99999999999999999999999999999999999999999998888877888776 5788999999999999
Q ss_pred EEeCCeEEEecChhhHHHHHHhcCCCCCCCCChhhHHHHh
Q 000517 416 LMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEV 455 (1449)
Q Consensus 416 lL~~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev 455 (1449)
+|.+|+|+..|+++|++. .|...-+++|..++
T Consensus 237 imkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 237 IMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 999999999999999974 34444455665543
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=332.65 Aligned_cols=215 Identities=22% Similarity=0.282 Sum_probs=175.2
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 924 (1449)
.+.++|+++.++ +..+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 467777776542 245999999999999999999999999999999999976542 2479999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc----ccccccccC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----AIKDSLVGI 995 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 995 (1449)
.++.. ...++.++|++|++.+++ +||+||+.+....+. .......++.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234667999999988774 899999988654321 112233456788889998873 334444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
.+.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ +++|||+++|+++ ++.+.+|++++|.
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 34799999999999999999999999999999999999999999999996 4799999999986 4678899999997
Q ss_pred cCcEEEEecCC
Q 000517 1076 TGGRIIYCGPL 1086 (1449)
Q Consensus 1076 ~gG~~v~~G~~ 1086 (1449)
+|+++..|+.
T Consensus 224 -~G~i~~~g~~ 233 (254)
T PRK14273 224 -NGCIEEESST 233 (254)
T ss_pred -CCEEEEeCCH
Confidence 5899999875
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=376.55 Aligned_cols=206 Identities=29% Similarity=0.437 Sum_probs=174.1
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1449)
++|+|+|++++||+.++|+||||||||||+++|+|.+ |. +|+|.+||+++++... ++.++||+|++.+|. .|
T Consensus 364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~T 438 (588)
T PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-GT 438 (588)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCC-cC
Confidence 5899999999999999999999999999999999999 86 8999999999887653 578999999887765 69
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
++|||.++. |+.+.+++.+++..++... .++ .|++..||.||+. ..
T Consensus 439 I~eNI~~g~-------------------------~~~~~eei~~al~~a~l~~------~i~--~lp~G~dT~vge~-G~ 484 (588)
T PRK11174 439 LRDNVLLGN-------------------------PDASDEQLQQALENAWVSE------FLP--LLPQGLDTPIGDQ-AA 484 (588)
T ss_pred HHHHhhcCC-------------------------CCCCHHHHHHHHHHhCHHH------HHH--hcccccccccccC-CC
Confidence 999998852 1223344555555444332 222 3788899999975 44
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
.||||||||++||||++++|+||+||||||+||+.++..|.+.|+++. .++|+|+..|++ +..+.+|+|++|++|+
T Consensus 485 ~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G~ 560 (588)
T PRK11174 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDGQ 560 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCCe
Confidence 599999999999999999999999999999999999999999999875 468888877776 5678899999999999
Q ss_pred EEEecChhhHHH
Q 000517 422 IVYHGPQDHVLA 433 (1449)
Q Consensus 422 iv~~G~~~~~~~ 433 (1449)
++..|+++++.+
T Consensus 561 i~e~G~~~eL~~ 572 (588)
T PRK11174 561 IVQQGDYAELSQ 572 (588)
T ss_pred EeecCCHHHHHh
Confidence 999999999864
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=334.31 Aligned_cols=202 Identities=25% Similarity=0.322 Sum_probs=172.6
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc----------------ccccceEE
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ----------------ETFARVSG 937 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----------------~~~~~~~g 937 (1449)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 4699999999999999999999999999999999998654 58999999986531 13456799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 000517 938 YCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVA 1017 (1449)
Q Consensus 938 yv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~ 1017 (1449)
|++|++.+++..|+.||+.++.... .........+.++++++.+|+.+..+..+ ..||||||||++||++|+.
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~ 163 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMP-----AQLSGGQQQRVAIARALAM 163 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcCh-----hhcCHHHHHHHHHHHHHHc
Confidence 9999999999999999998754221 11233444567889999999987777654 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1018 NPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1018 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. ++...+|++++|. +|++++.|+.
T Consensus 164 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 231 (252)
T TIGR03005 164 RPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFD-KGRIVEQGKP 231 (252)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCH
Confidence 99999999999999999999999999998764 899999999986 5677899999997 5899998875
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=336.56 Aligned_cols=207 Identities=25% Similarity=0.371 Sum_probs=174.7
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-------CceEEEEcCCCc
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-------PKTSAYISQNDL 255 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 255 (1449)
...+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 356999999999999999999999999999999999999987 9999999988754321 346999999999
Q ss_pred cCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccc
Q 000517 256 HIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMV 335 (1449)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~v 335 (1449)
+++.+||+||+.+.....+... .+ ....++++++.+||.+..++.+
T Consensus 113 ~~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~ 158 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQGVPR----------AE------------------------REERAAEALELVGLEGWEHKYP 158 (269)
T ss_pred cCCCCcHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCHhHhhCCc
Confidence 9999999999998754322100 00 0112456789999988888887
Q ss_pred cccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEE
Q 000517 336 GNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415 (1449)
Q Consensus 336 g~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~ 415 (1449)
++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++. |..+++.+++|+++
T Consensus 159 ~~-----LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~t-H~~~~~~~~~d~v~ 232 (269)
T cd03294 159 DE-----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFIT-HDLDEALRLGDRIA 232 (269)
T ss_pred cc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhcCEEE
Confidence 75 9999999999999999999999999999999999999999999998765567777665 55667889999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000517 416 LMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1449)
+|++|++++.|+.+++.
T Consensus 233 ~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 233 IMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=333.84 Aligned_cols=204 Identities=29% Similarity=0.325 Sum_probs=170.3
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCccCcc---ccccceEEEEccCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSP 947 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~ 947 (1449)
..+|+|+|++|++||+++|+||||||||||+++|+|...+. +.+|+|.++|.++.. ..+++.+||++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 45999999999999999999999999999999999976531 358999999987532 245667999999998888
Q ss_pred CCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000517 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIF 1023 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~ill 1023 (1449)
.+||.||+.+....+.. .....+..+.++++++.++|.+ ..++.+ ..||||||||++|||||+.+|++|+
T Consensus 96 ~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~lll 169 (250)
T PRK14247 96 NLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPA-----GKLSGGQQQRLCIARALAFQPEVLL 169 (250)
T ss_pred CCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999886543211 1122344567889999999854 234443 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1024 MDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1024 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|||||+|||+.++..+.+.|+++++ |+|||+++|+++ ++.+.+|++++|. +|+++..|+.
T Consensus 170 LDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 229 (250)
T PRK14247 170 ADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLY-KGQIVEWGPT 229 (250)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEE-CCeEEEECCH
Confidence 9999999999999999999999864 899999999986 4677899999997 5899999875
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=348.92 Aligned_cols=206 Identities=31% Similarity=0.509 Sum_probs=170.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1449)
++++|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||.+..+..+ +++++||+|++.+++ -|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcccc-cc
Confidence 6899999999999999999999999999999999999997 9999999999887653 688999999887665 69
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
+|||+.++.. +.+.++..++++..+ +.+.+.-++..||.+|+. .+
T Consensus 411 ireNi~l~~~-------------------------~~s~e~i~~al~~a~---------l~~~v~~p~GLdt~ige~-G~ 455 (559)
T COG4988 411 IRENILLARP-------------------------DASDEEIIAALDQAG---------LLEFVPKPDGLDTVIGEG-GA 455 (559)
T ss_pred HHHHhhccCC-------------------------cCCHHHHHHHHHHhc---------HHHhhcCCCcccchhccC-CC
Confidence 9999998531 111111222222111 122222356789999974 67
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
||||||+|||++|||++.+++++++||||++||.++...|.+.|.++++ ++|+++..|++ +...-+|+|++|++|+
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl--~~~~~~D~I~vld~G~ 531 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRL--EDAADADRIVVLDNGR 531 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh--HHHhcCCEEEEecCCc
Confidence 8999999999999999999999999999999999999999999999985 47888776653 5667899999999999
Q ss_pred EEEecChhhHHH
Q 000517 422 IVYHGPQDHVLA 433 (1449)
Q Consensus 422 iv~~G~~~~~~~ 433 (1449)
++.+|.++++.+
T Consensus 532 l~~~g~~~~L~~ 543 (559)
T COG4988 532 LVEQGTHEELSE 543 (559)
T ss_pred eeccCCHHHHhh
Confidence 999999999854
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=339.18 Aligned_cols=214 Identities=28% Similarity=0.495 Sum_probs=180.2
Q ss_pred CCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcC
Q 000517 845 EPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISG 924 (1449)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G 924 (1449)
.++.+..+|++|.++. + +++++|+|++++||+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~-----------g-~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD-----------G-KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC-----------C-CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 4566667788876542 2 2799999999999999999999999999999999998765 589999999
Q ss_pred ccC---ccccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccc------ccccccC
Q 000517 925 YPK---VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI------KDSLVGI 995 (1449)
Q Consensus 925 ~~~---~~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~------~~~~vg~ 995 (1449)
.+. +...++++++||+|++.+++ -|++||+.++. ++ ..++.+.++++..+|.+. .|+.+|+
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~----~s~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PD----ASDEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----Cc----CCHHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 875 34678899999999998876 59999998742 12 223557778888887654 3566776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
.| ++|||||+|||++||||+.+++++++||||++||.++.+.|++.|.++++ ++||+++||++. ....+|+|++|+
T Consensus 453 ~G-~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 GG-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred CC-CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 54 57999999999999999999999999999999999999999999999976 599999999974 567889999997
Q ss_pred cCcEEEEecCCC
Q 000517 1076 TGGRIIYCGPLG 1087 (1449)
Q Consensus 1076 ~gG~~v~~G~~~ 1087 (1449)
+|+++..|...
T Consensus 529 -~G~l~~~g~~~ 539 (559)
T COG4988 529 -NGRLVEQGTHE 539 (559)
T ss_pred -CCceeccCCHH
Confidence 59999999864
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=338.06 Aligned_cols=206 Identities=22% Similarity=0.337 Sum_probs=170.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCC-------CCCceEEEEcCCCc-
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF-------VPPKTSAYISQNDL- 255 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~- 255 (1449)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 35999999999999999999999999999999999999997 99999999987531 11357999999852
Q ss_pred cCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC-cccccc
Q 000517 256 HIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD-VCADTM 334 (1449)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 334 (1449)
.+...||+||+.|+....+.. ..+ ....++.+++.+||+ ...++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVS----------EED------------------------AKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCChhhhhCC
Confidence 344579999999875432211 000 011356789999997 556777
Q ss_pred ccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeE
Q 000517 335 VGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDI 414 (1449)
Q Consensus 335 vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v 414 (1449)
+.+ |||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|++ +|..+++.+++|+|
T Consensus 143 ~~~-----LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviii-tHd~~~~~~~~drv 216 (290)
T PRK13634 143 PFE-----LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLV-THSMEDAARYADQI 216 (290)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEE
Confidence 765 999999999999999999999999999999999999999999999976556676665 45567888999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 000517 415 ILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1449)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIF 234 (290)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999988764
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=349.97 Aligned_cols=204 Identities=23% Similarity=0.321 Sum_probs=175.9
Q ss_pred ccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---cc----ccceEEEEccCCC
Q 000517 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ET----FARVSGYCEQTDI 944 (1449)
Q Consensus 872 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~----~~~~~gyv~Q~d~ 944 (1449)
+...+|+|+||+|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.. .. .++.+||++|+..
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 344589999999999999999999999999999999998765 58999999987532 11 2357999999999
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000517 945 HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 1024 (1449)
Q Consensus 945 ~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illL 1024 (1449)
+++++||+||+.+....+. ...+...+.++++++.+||.+..++.+. .||||||||++|||||+.+|++|||
T Consensus 117 l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~~-----~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYPD-----ELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999998765432 2334455678899999999988887754 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|. +|+++..|+..
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~-~G~i~~~g~~~ 250 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQ-NGEVVQVGTPD 250 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEE-CCEEEecCCHH
Confidence 999999999999999999999875 4899999999986 5778899999998 58999998764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=332.39 Aligned_cols=213 Identities=20% Similarity=0.330 Sum_probs=176.6
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEec
Confidence 366777776542 34699999999999999999999999999999999998654 589999999875
Q ss_pred ccc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHc-CCcccccccccCCCCCCCC
Q 000517 928 VQE----TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-ELDAIKDSLVGIPGVNGLS 1002 (1449)
Q Consensus 928 ~~~----~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LS 1002 (1449)
... ..++.++|++|+..+++.+||.||+.+..... ......+.++++++.+ ++.+..+..+ ..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-----GTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-----hhCC
Confidence 321 24567999999999899999999998754221 1122334567778877 4766555543 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEE
Q 000517 1003 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIY 1082 (1449)
Q Consensus 1003 gGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~ 1082 (1449)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLE-NGHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEe-CCEEEe
Confidence 99999999999999999999999999999999999999999999877999999999986 5788999999998 589999
Q ss_pred ecCCC
Q 000517 1083 CGPLG 1087 (1449)
Q Consensus 1083 ~G~~~ 1087 (1449)
.|+..
T Consensus 218 ~~~~~ 222 (237)
T PRK11614 218 EDTGD 222 (237)
T ss_pred eCCHH
Confidence 99864
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=300.72 Aligned_cols=200 Identities=28% Similarity=0.419 Sum_probs=177.1
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCCCCCCHHH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEE 953 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~e 953 (1449)
+.+|+|+|++|.+||.++++||||||||||||+++|..+| ..|+|.+||.++....- .-|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 4599999999999999999999999999999999998876 58999999998654322 2389999999999999999
Q ss_pred HHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000517 954 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 1033 (1449)
Q Consensus 954 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~ 1033 (1449)
|+.|+..++. +.+.++.+.+.+++..+||.+..+..+ -+||||||||+.|||||+.+|++|+||||.+.||+
T Consensus 94 NvafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 9999988874 567888899999999999998887765 37999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hcCCEEEEEecCccHHHHHhcCeEEEEecC-cEEEEecCC
Q 000517 1034 RAAAIVMRAVKNIV-NTGRTIVCTIHQPSIDIFEAFDELILLKTG-GRIIYCGPL 1086 (1449)
Q Consensus 1034 ~~~~~i~~~l~~l~-~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g-G~~v~~G~~ 1086 (1449)
-+++.++++|-++. ++|+.++++||+.+ +..-.++++++|+.+ ||++..-|+
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 99999999998886 46999999999976 455578999999743 788887766
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=337.58 Aligned_cols=222 Identities=23% Similarity=0.362 Sum_probs=178.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC-------CCceEEEEcCCC-cc
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV-------PPKTSAYISQND-LH 256 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d-~~ 256 (1449)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.++.... .++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999998 999999999875211 245799999985 24
Q ss_pred CCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC-ccccccc
Q 000517 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD-VCADTMV 335 (1449)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~v 335 (1449)
+...||.||+.|+....+.. +.+ .+..+.++++.+||. ...++.+
T Consensus 97 l~~~tv~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~ 142 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIP----------KEK------------------------AEKIAAEKLEMVGLADEFWEKSP 142 (288)
T ss_pred cccchHHHHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCChhhccCCc
Confidence 44579999999976543211 000 011346678899996 4566666
Q ss_pred cccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEE
Q 000517 336 GNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415 (1449)
Q Consensus 336 g~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~ 415 (1449)
.+ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++. |..+++.++||+|+
T Consensus 143 ~~-----LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vt-Hd~~~~~~~~dri~ 215 (288)
T PRK13643 143 FE-----LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVT-HLMDDVADYADYVY 215 (288)
T ss_pred cc-----CCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEe-cCHHHHHHhCCEEE
Confidence 54 999999999999999999999999999999999999999999999875 467776655 55678889999999
Q ss_pred EEeCCeEEEecChhhHH---HHHHhcCCCCCCCCChhh
Q 000517 416 LMAEGKIVYHGPQDHVL---AFFEDCGFRCPERKGVSD 450 (1449)
Q Consensus 416 lL~~G~iv~~G~~~~~~---~~F~~~Gf~~p~~~~~ad 450 (1449)
+|++|+++++|+++++. ++++..|+.+|.....++
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~ 253 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFAD 253 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHH
Confidence 99999999999999874 345566777665444433
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=329.48 Aligned_cols=204 Identities=24% Similarity=0.397 Sum_probs=171.7
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCccCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 260 (1449)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKL 90 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccccC
Confidence 5899999999999999999999999999999999999997 9999999988754321 24689999999999999
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
||+||+.+.....+.. +.+ ....++.+++.+||++..++.+++
T Consensus 91 tv~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~--- 133 (232)
T cd03218 91 TVEENILAVLEIRGLS----------KKE------------------------REEKLEELLEEFHITHLRKSKASS--- 133 (232)
T ss_pred cHHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhhCChhh---
Confidence 9999998864322110 000 011346688999998888887765
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++. |..+++.+++|++++|++|
T Consensus 134 --LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~s-H~~~~~~~~~d~i~~l~~G 209 (232)
T cd03218 134 --LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITD-HNVRETLSITDRAYIIYEG 209 (232)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999875 466766655 5566889999999999999
Q ss_pred eEEEecChhhHH
Q 000517 421 KIVYHGPQDHVL 432 (1449)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1449)
++++.|+.+++.
T Consensus 210 ~i~~~~~~~~~~ 221 (232)
T cd03218 210 KVLAEGTPEEIA 221 (232)
T ss_pred eEEEEeCHHHhh
Confidence 999999987653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=338.41 Aligned_cols=217 Identities=27% Similarity=0.411 Sum_probs=176.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC-----CCceEEEEcCCCc-cC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV-----PPKTSAYISQNDL-HI 257 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 257 (1449)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 35999999999999999999999999999999999999998 999999999876532 2467999999863 44
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC--ccccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD--VCADTMV 335 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~--~~~dt~v 335 (1449)
...||+||+.|+....+.. +.+ ....++++++.+||+ +..|+.+
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~ 142 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------EEE------------------------IENRVKRAMNIVGLDYEDYKDKSP 142 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------HHH------------------------HHHHHHHHHHHcCCCchhhccCCc
Confidence 5689999999865432211 000 011356789999997 5667776
Q ss_pred cccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEE
Q 000517 336 GNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415 (1449)
Q Consensus 336 g~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~ 415 (1449)
.. ||||||||++||+||+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|++ +|...++.++||+|+
T Consensus 143 ~~-----LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~v-tHd~~~~~~~~drv~ 216 (287)
T PRK13637 143 FE-----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILV-SHSMEDVAKLADRII 216 (287)
T ss_pred cc-----CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEE
Confidence 55 999999999999999999999999999999999999999999999976546676665 455678889999999
Q ss_pred EEeCCeEEEecChhhHHH---HHHhcCCCCC
Q 000517 416 LMAEGKIVYHGPQDHVLA---FFEDCGFRCP 443 (1449)
Q Consensus 416 lL~~G~iv~~G~~~~~~~---~F~~~Gf~~p 443 (1449)
+|++|++++.|+++++.+ .+...|+.+|
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 247 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVP 247 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCC
Confidence 999999999999988743 2334455544
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=327.04 Aligned_cols=200 Identities=27% Similarity=0.424 Sum_probs=169.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCCccCCCCCHH
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVR 263 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1449)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999987 9999999988753 246799999999888999999
Q ss_pred HHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccC
Q 000517 264 ETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343 (1449)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGl 343 (1449)
||+.++....+... .+ ....++.+++.+||++..++.+++ |
T Consensus 92 e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------AE------------------------ARERAEELLELVGLSGFENAYPHQ-----L 132 (220)
T ss_pred HHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCChhhhhCCccc-----C
Confidence 99998754322100 00 011246688999998877877765 9
Q ss_pred ChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe--CCe
Q 000517 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA--EGK 421 (1449)
Q Consensus 344 SGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~--~G~ 421 (1449)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+..++|+|++.| ..+++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH-~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTH-DIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEec-CHHHHHHhCCEEEEEECCCCE
Confidence 9999999999999999999999999999999999999999999986555677776655 4567889999999999 799
Q ss_pred EEEecCh
Q 000517 422 IVYHGPQ 428 (1449)
Q Consensus 422 iv~~G~~ 428 (1449)
++..++.
T Consensus 212 i~~~~~~ 218 (220)
T cd03293 212 IVAEVEV 218 (220)
T ss_pred EEEEEEe
Confidence 9988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=336.36 Aligned_cols=220 Identities=25% Similarity=0.349 Sum_probs=179.7
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC-eeEEEEEEcCccC
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG-YVEGEIKISGYPK 927 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~~ 927 (1449)
+.++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+.
T Consensus 5 l~~~nl~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 5 IRVEKLAKTF-------------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTV 71 (262)
T ss_pred EEEeeEEEEe-------------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEec
Confidence 5666766543 2346999999999999999999999999999999999986553 1369999999865
Q ss_pred cc--------ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccC-----CCCChHHHHHHHHHHHHHcCCccccccccc
Q 000517 928 VQ--------ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLA-----PEINSKTKAEFVNEVLETIELDAIKDSLVG 994 (1449)
Q Consensus 928 ~~--------~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg 994 (1449)
.. ...++.++|++|++.+++.+||.||+.+......+ .....+..++.++++++.+||.+..++.++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (262)
T PRK09984 72 QREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS 151 (262)
T ss_pred ccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc
Confidence 32 12356789999999999999999999875321000 011123345678999999999887777654
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEE
Q 000517 995 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELIL 1073 (1449)
Q Consensus 995 ~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~ 1073 (1449)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+...+|++++
T Consensus 152 -----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~ 225 (262)
T PRK09984 152 -----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVA 225 (262)
T ss_pred -----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 7999999999999999999999999999999999999999999999975 4899999999986 46788999999
Q ss_pred EecCcEEEEecCCCC
Q 000517 1074 LKTGGRIIYCGPLGK 1088 (1449)
Q Consensus 1074 l~~gG~~v~~G~~~~ 1088 (1449)
|. +|++++.|+..+
T Consensus 226 l~-~g~i~~~g~~~~ 239 (262)
T PRK09984 226 LR-QGHVFYDGSSQQ 239 (262)
T ss_pred EE-CCEEEEeCCHHH
Confidence 97 589999998753
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=346.06 Aligned_cols=208 Identities=25% Similarity=0.345 Sum_probs=176.8
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCc----cCCCCCC-------CceEEEE
Q 000517 182 AKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY----KLEEFVP-------PKTSAYI 250 (1449)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~----~~~~~~~-------~~~~~yv 250 (1449)
....+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|. ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 3467999999999999999999999999999999999999998 999999996 3332211 2479999
Q ss_pred cCCCccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcc
Q 000517 251 SQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVC 330 (1449)
Q Consensus 251 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~ 330 (1449)
+|++.+++.+||+||+.|+....+... .+ ....++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------~~------------------------~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------AE------------------------RRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCchh
Confidence 999999999999999999865433211 00 01234668999999988
Q ss_pred ccccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhh
Q 000517 331 ADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL 410 (1449)
Q Consensus 331 ~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~ 410 (1449)
.|+.+++ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++|+|++ +|..+++.++
T Consensus 158 ~~~~~~~-----LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~i-THdl~e~~~l 231 (382)
T TIGR03415 158 ADKKPGE-----LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFV-SHDLDEALKI 231 (382)
T ss_pred hcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHh
Confidence 8888876 999999999999999999999999999999999999999999999876556777765 4567788999
Q ss_pred cCeEEEEeCCeEEEecChhhHH
Q 000517 411 FDDIILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 411 fD~v~lL~~G~iv~~G~~~~~~ 432 (1449)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=335.85 Aligned_cols=201 Identities=25% Similarity=0.389 Sum_probs=172.0
Q ss_pred eeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---ccccceEEEEccCCC-CCCCCC
Q 000517 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDI-HSPNIT 950 (1449)
Q Consensus 875 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~-~~~~lT 950 (1449)
.+|+|+||++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+... ..+++.+||++|++. .+...|
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHhheEEEecCccccccccc
Confidence 599999999999999999999999999999999998664 58999999987532 245567899999963 344689
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000517 951 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1030 (1449)
Q Consensus 951 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsg 1030 (1449)
|.||+.+..... ....+...+.++++++.++|.+..++.++ .||||||||++|||||+.+|++|+|||||+|
T Consensus 96 v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrl~laraL~~~p~llilDEPt~g 167 (277)
T PRK13652 96 VEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPH-----HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAG 167 (277)
T ss_pred HHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 999998765432 23344455678999999999887777754 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1031 LDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1031 LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|+ +|++++.|+.+
T Consensus 168 LD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~-~G~i~~~g~~~ 223 (277)
T PRK13652 168 LDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMD-KGRIVAYGTVE 223 (277)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCeEEEECCHH
Confidence 9999999999999999765 899999999986 5778999999998 58999999863
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=334.64 Aligned_cols=202 Identities=28% Similarity=0.431 Sum_probs=171.5
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---ccccceEEEEccCCCCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNIT 950 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lT 950 (1449)
+.+|+|+|+++++|++++|+|+||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFT 92 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCC
Confidence 4699999999999999999999999999999999998654 58999999986532 234567999999988878899
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh------hCCCEEEE
Q 000517 951 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELV------ANPSIIFM 1024 (1449)
Q Consensus 951 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~------~~p~illL 1024 (1449)
|+||+.+..... ....+..++.++++++.++|.+..++.++ .||||||||++||++|+ .+|++|+|
T Consensus 93 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGe~qrv~la~al~~~~~~~~~p~lllL 164 (258)
T PRK13548 93 VEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYP-----QLSGGEQQRVQLARVLAQLWEPDGPPRWLLL 164 (258)
T ss_pred HHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhcccccCCCCCEEEE
Confidence 999998754221 11123334568899999999887777654 79999999999999999 59999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIV-NTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
||||+|||+.++..+.+.|++++ +.|+|||++||++. ++...+|++++|. +|++++.|+..
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 226 (258)
T PRK13548 165 DEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLH-QGRLVADGTPA 226 (258)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEE-CCEEEeeCCHH
Confidence 99999999999999999999997 56899999999986 5677899999998 58999988863
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=331.34 Aligned_cols=204 Identities=27% Similarity=0.367 Sum_probs=171.3
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccc----cccceEEEEccCCCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQE----TFARVSGYCEQTDIHSPNI 949 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q~d~~~~~l 949 (1449)
+.+|+|+||+|++||+++|+|+|||||||||++|+|...+ .+|+|.++|.+.... ..++.++|++|++.+++.+
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 4699999999999999999999999999999999998654 589999999865321 1245699999999999999
Q ss_pred CHHHHHHHHHHhccC--C---CCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000517 950 TVEESVIFSAWLRLA--P---EINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 1024 (1449)
Q Consensus 950 Tv~e~l~f~~~lr~~--~---~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illL 1024 (1449)
||+||+.+....... . ....+..++.++++++.+|+.+..++.++ .||||||||++|||+|+.+|++|+|
T Consensus 93 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Ge~qrv~laral~~~p~~lll 167 (242)
T TIGR03411 93 TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG-----LLSHGQKQWLEIGMLLMQDPKLLLL 167 (242)
T ss_pred CHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 999999885432100 0 01123345678999999999887777654 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.+|++++|. +|+++..|+..
T Consensus 168 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g~~~~~~~~~ 227 (242)
T TIGR03411 168 DEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLH-QGSVLAEGSLD 227 (242)
T ss_pred cCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEE-CCeEEeeCCHH
Confidence 999999999999999999999875 799999999986 5777899999997 58999998753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=337.52 Aligned_cols=201 Identities=23% Similarity=0.323 Sum_probs=171.9
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc----ccccceEEEEccCCC-CCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ----ETFARVSGYCEQTDI-HSPN 948 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~d~-~~~~ 948 (1449)
+.+|+||||+|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++. .++.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 4599999999999999999999999999999999998654 58999999987532 234567999999975 3567
Q ss_pred CCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000517 949 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028 (1449)
Q Consensus 949 lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPT 1028 (1449)
.|+.||+.+..... ..+....++.++++++.+||.+..++.++ .||||||||++||+||+.+|+||+|||||
T Consensus 93 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEPt 164 (274)
T PRK13644 93 RTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPK-----TLSGGQGQCVALAGILTMEPECLIFDEVT 164 (274)
T ss_pred chHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998865332 12344455678899999999888777654 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1029 TGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1029 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
+|||+.++..+++.|++++++|+|||++||+++ ++ ..+|++++|. +|++++.|+.+
T Consensus 165 ~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~-~G~i~~~g~~~ 220 (274)
T PRK13644 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMD-RGKIVLEGEPE 220 (274)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999877999999999986 45 6799999997 58999999863
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=333.32 Aligned_cols=216 Identities=27% Similarity=0.322 Sum_probs=176.7
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISGY 925 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G~ 925 (1449)
++++|++++++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 5 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (253)
T PRK14267 5 IETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGR 71 (253)
T ss_pred EEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 56777776542 245999999999999999999999999999999999986542 24899999998
Q ss_pred cCc-----cccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000517 926 PKV-----QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGIP 996 (1449)
Q Consensus 926 ~~~-----~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 996 (1449)
++. ...+++.++|++|++.+++.+||.||+.+....+.. ....+...+.++++++.++|.+ ..+..
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 146 (253)
T PRK14267 72 NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY---- 146 (253)
T ss_pred EccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC----
Confidence 753 123456799999999999999999999886543211 0122334456788999999853 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEec
Q 000517 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 997 ~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~ 1076 (1449)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++...+|++++|.
T Consensus 147 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~- 222 (253)
T PRK14267 147 -PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY- 222 (253)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE-
Confidence 347999999999999999999999999999999999999999999999865 799999999986 5678899999997
Q ss_pred CcEEEEecCC
Q 000517 1077 GGRIIYCGPL 1086 (1449)
Q Consensus 1077 gG~~v~~G~~ 1086 (1449)
+|++++.|+.
T Consensus 223 ~G~i~~~~~~ 232 (253)
T PRK14267 223 LGKLIEVGPT 232 (253)
T ss_pred CCEEEEeCCH
Confidence 5899999886
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=329.67 Aligned_cols=214 Identities=25% Similarity=0.392 Sum_probs=173.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCccCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 260 (1449)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 5899999999999999999999999999999999999987 9999999998765432 24589999999999999
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
||+||+.++....+... .... . ...+.+ +....++++++.+||++..++.+++
T Consensus 91 tv~~~l~~~~~~~~~~~-------~~~~-~-----~~~~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~--- 143 (236)
T cd03219 91 TVLENVMVAAQARTGSG-------LLLA-R-----ARREER-----------EARERAEELLERVGLADLADRPAGE--- 143 (236)
T ss_pred CHHHHHHHHHhhccccc-------cccc-c-----ccccHH-----------HHHHHHHHHHHHcCccchhhCChhh---
Confidence 99999998754321100 0000 0 000000 0112356788999998877877765
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++. |..+++.+++|++++|++|
T Consensus 144 --LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vs-H~~~~~~~~~d~i~~l~~G 219 (236)
T cd03219 144 --LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVE-HDMDVVMSLADRVTVLDQG 219 (236)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-cCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999876 567776655 5566888999999999999
Q ss_pred eEEEecChhhHH
Q 000517 421 KIVYHGPQDHVL 432 (1449)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1449)
++++.|+++++.
T Consensus 220 ~i~~~~~~~~~~ 231 (236)
T cd03219 220 RVIAEGTPDEVR 231 (236)
T ss_pred EEEeecCHHHhc
Confidence 999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=336.62 Aligned_cols=215 Identities=25% Similarity=0.335 Sum_probs=179.6
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 6 l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i~ 72 (279)
T PRK13635 6 IRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVLS 72 (279)
T ss_pred EEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECC
Confidence 567777665421 124599999999999999999999999999999999998765 5899999998754
Q ss_pred c---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000517 929 Q---ETFARVSGYCEQTDI-HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTE 1004 (1449)
Q Consensus 929 ~---~~~~~~~gyv~Q~d~-~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1004 (1449)
. ...++.+||++|++. .++..||.||+.+..... ....++..+.++++++.+||.+..++.++ .||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G 144 (279)
T PRK13635 73 EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPH-----RLSGG 144 (279)
T ss_pred cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHH
Confidence 2 234567999999973 567789999998865432 12334455678999999999988887754 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEe
Q 000517 1005 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYC 1083 (1449)
Q Consensus 1005 qrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~ 1083 (1449)
||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++ ..+|++++|. +|++++.
T Consensus 145 ~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~-~G~i~~~ 221 (279)
T PRK13635 145 QKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMN-KGEILEE 221 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEE-CCEEEEE
Confidence 999999999999999999999999999999999999999999876 899999999986 34 4699999997 5899999
Q ss_pred cCCC
Q 000517 1084 GPLG 1087 (1449)
Q Consensus 1084 G~~~ 1087 (1449)
|+.+
T Consensus 222 g~~~ 225 (279)
T PRK13635 222 GTPE 225 (279)
T ss_pred CCHH
Confidence 9863
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=339.80 Aligned_cols=205 Identities=28% Similarity=0.431 Sum_probs=176.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC--CCceEEEEcCCCccCCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV--PPKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1449)
..+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 35899999999999999999999999999999999999998 999999998875421 2457999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|+||+.+.+++.+.... + ....++.+++.+||++..|+.+++
T Consensus 92 v~e~l~~~~~~~~~~~~----------~------------------------~~~~~~~~l~~~gl~~~~~~~~~~---- 133 (301)
T TIGR03522 92 VREYLQFIAGIYGMKGQ----------L------------------------LKQRVEEMIELVGLRPEQHKKIGQ---- 133 (301)
T ss_pred HHHHHHHHHHHcCCCHH----------H------------------------HHHHHHHHHHHCCCchHhcCchhh----
Confidence 99999987665432100 0 011246789999999988888876
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
|||||||||+||+||+++|++|+|||||+|||+.++..+++.|+++.+ ++|++++ +|..+++.++||+|++|++|+
T Consensus 134 -LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~-sH~l~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 134 -LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILS-THIMQEVEAICDRVIIINKGK 209 (301)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEE-cCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999853 5666665 556778999999999999999
Q ss_pred EEEecChhhHHH
Q 000517 422 IVYHGPQDHVLA 433 (1449)
Q Consensus 422 iv~~G~~~~~~~ 433 (1449)
+++.|+.+++.+
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999998865
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=319.40 Aligned_cols=196 Identities=30% Similarity=0.584 Sum_probs=163.2
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC-eeEEEEEEcCcc
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG-YVEGEIKISGYP 926 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~ 926 (1449)
+++|+|++|.++.+ .+++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999987643 13457999999999999999999999999999999999986522 468999999987
Q ss_pred Ccc--ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000517 927 KVQ--ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTE 1004 (1449)
Q Consensus 927 ~~~--~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1004 (1449)
... ...++.++|++|++.+++.+||+||+.+....+ .+.. +..||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 542 245667999999999999999999998753211 2222 2479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEe
Q 000517 1005 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYC 1083 (1449)
Q Consensus 1005 qrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~ 1083 (1449)
||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ +.|+|+++|+...++.+.+|++++|. +|++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~-~G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLY-EGRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEE-CCEEEec
Confidence 999999999999999999999999999999999999999999765 67877776664446778999999998 5899876
Q ss_pred c
Q 000517 1084 G 1084 (1449)
Q Consensus 1084 G 1084 (1449)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 5
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=324.94 Aligned_cols=194 Identities=27% Similarity=0.402 Sum_probs=164.6
Q ss_pred cceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-ccccceEEEEccCCCCCCCCCHHHHHHH
Q 000517 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFARVSGYCEQTDIHSPNITVEESVIF 957 (1449)
Q Consensus 879 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~e~l~f 957 (1449)
|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 99999999999999999999999999999998654 58999999987532 1234679999999999999999999987
Q ss_pred HHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000517 958 SAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 1037 (1449)
Q Consensus 958 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~ 1037 (1449)
....+. .. .+..++.++++++.++|.+..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLPG-----ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 533211 11 12345568899999999887777653 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1038 IVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1038 ~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
.+++.|+++++ .|+|||++||+++ ++.+.+|++++|. +|+++..|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLD-NGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEE-CCEEeecC
Confidence 99999999975 4899999999986 4667899999998 58987654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=294.08 Aligned_cols=199 Identities=28% Similarity=0.422 Sum_probs=171.9
Q ss_pred cccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---c---c-ccceEEEEccCC
Q 000517 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---E---T-FARVSGYCEQTD 943 (1449)
Q Consensus 871 ~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~---~-~~~~~gyv~Q~d 943 (1449)
.+...||++|++.|++||.+||+|||||||||||-+|+|...+ .+|+|.+.|++... + . ..+.+|+|+|..
T Consensus 20 ~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF 97 (228)
T COG4181 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97 (228)
T ss_pred CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence 4567899999999999999999999999999999999998765 58999999988532 1 2 346899999999
Q ss_pred CCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000517 944 IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIF 1023 (1449)
Q Consensus 944 ~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~ill 1023 (1449)
.+.|++|..||+.....++... .........+.|+.+||.+..+.+. .+|||||+|||+||||++..|+|||
T Consensus 98 ~Lip~ltAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vLf 169 (228)
T COG4181 98 HLIPNLTALENVALPLELRGES---SADSRAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVLF 169 (228)
T ss_pred eccccchhhhhccchhhhcCCc---cccHHHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEEe
Confidence 9999999999999888877532 2233455778999999988776664 3799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcEEEE
Q 000517 1024 MDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIY 1082 (1449)
Q Consensus 1024 LDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~ 1082 (1449)
.||||-+||..+...|.+++-.+.. .|.|.|++||||. +...|||.+-|. .|+++.
T Consensus 170 ADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~-~G~l~~ 226 (228)
T COG4181 170 ADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLR-SGRLVE 226 (228)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeee-cceecc
Confidence 9999999999999999999988864 5999999999985 678899999997 588874
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=333.24 Aligned_cols=216 Identities=25% Similarity=0.352 Sum_probs=176.8
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISGY 925 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G~ 925 (1449)
+.++|++++++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 5 l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~ 71 (258)
T PRK14241 5 IDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGE 71 (258)
T ss_pred EEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCE
Confidence 56677766542 245999999999999999999999999999999999976532 25899999998
Q ss_pred cCc-----cccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc----ccccccccCC
Q 000517 926 PKV-----QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----AIKDSLVGIP 996 (1449)
Q Consensus 926 ~~~-----~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~~ 996 (1449)
+.. ...+++.++|++|++.+++.+||+||+.+....+. ....+..++.++++++.++|. +..++.
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 145 (258)
T PRK14241 72 DLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP---- 145 (258)
T ss_pred eccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC----
Confidence 752 12345679999999999999999999988654331 112334456788899999984 233443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe-
Q 000517 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK- 1075 (1449)
Q Consensus 997 ~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~- 1075 (1449)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.
T Consensus 146 -~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~ 222 (258)
T PRK14241 146 -GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNL 222 (258)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEec
Confidence 347999999999999999999999999999999999999999999999864 689999999986 5778899999997
Q ss_pred ----cCcEEEEecCC
Q 000517 1076 ----TGGRIIYCGPL 1086 (1449)
Q Consensus 1076 ----~gG~~v~~G~~ 1086 (1449)
+.|++++.|+.
T Consensus 223 ~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 223 EATGKPGRLVEIDDT 237 (258)
T ss_pred ccCCCCceEEecCCH
Confidence 25899999985
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=327.70 Aligned_cols=198 Identities=23% Similarity=0.361 Sum_probs=167.4
Q ss_pred eccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCCCCCCHHHHHH
Q 000517 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVI 956 (1449)
Q Consensus 877 L~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~e~l~ 956 (1449)
|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 5799999999999999999999999999999998654 5899999998754321 12489999999999999999998
Q ss_pred HHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000517 957 FSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036 (1449)
Q Consensus 957 f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~ 1036 (1449)
+...... .....+...+.++++++.++|.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 7632111 122334445668899999999887777654 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1037 AIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1037 ~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLT-NGPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEe-CCcEecccCc
Confidence 9999999998764 899999999986 5778899999998 5899988864
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=336.18 Aligned_cols=201 Identities=23% Similarity=0.338 Sum_probs=170.0
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-----ccccceEEEEccCCCC-CC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-----ETFARVSGYCEQTDIH-SP 947 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-----~~~~~~~gyv~Q~d~~-~~ 947 (1449)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.. +.
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 4599999999999999999999999999999999998665 58999999987531 2345679999998753 34
Q ss_pred CCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000517 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1027 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEP 1027 (1449)
..|+.||+.+....+ ....+...+.++++++.+||.+..++.++ .||||||||++||++|+.+|++|+||||
T Consensus 92 ~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~laraL~~~p~lllLDEP 163 (271)
T PRK13638 92 YTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQ-----CLSHGQKKRVAIAGALVLQARYLLLDEP 163 (271)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCch-----hCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 568999998764332 12233445668889999999887777643 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1028 TTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1028 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|. +|++++.|+.
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 220 (271)
T PRK13638 164 TAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLR-QGQILTHGAP 220 (271)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999877999999999986 4667899999997 5899999975
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=325.56 Aligned_cols=194 Identities=25% Similarity=0.403 Sum_probs=163.2
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC------CCceEEEEcCCCccCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV------PPKTSAYISQNDLHIA 258 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~~ 258 (1449)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 5899999999999999999999999999999999999987 999999998875432 1357999999998999
Q ss_pred CCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 259 EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
.+||+||+.++....+... .+ .+..++.+++.+||++..++.+++
T Consensus 94 ~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~- 138 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIGVPP----------RD------------------------ANERVSAALEKVGLEGKAHALPMQ- 138 (216)
T ss_pred cccHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCChhhhhCChhh-
Confidence 9999999998764322100 00 011246688999998888887765
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.++||++++|+
T Consensus 139 ----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~v-sH~~~~~~~~~d~i~~l~ 212 (216)
T TIGR00960 139 ----LSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVA-THDINLVETYRHRTLTLS 212 (216)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999999999865 46676665 455678888999999999
Q ss_pred CCeE
Q 000517 419 EGKI 422 (1449)
Q Consensus 419 ~G~i 422 (1449)
+|++
T Consensus 213 ~G~i 216 (216)
T TIGR00960 213 RGRL 216 (216)
T ss_pred CCcC
Confidence 9974
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=345.14 Aligned_cols=205 Identities=22% Similarity=0.343 Sum_probs=177.1
Q ss_pred cccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc----Ccc---c---cc-cceEEEE
Q 000517 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP----KVQ---E---TF-ARVSGYC 939 (1449)
Q Consensus 871 ~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~----~~~---~---~~-~~~~gyv 939 (1449)
++...+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+ ... . .. ++.++|+
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4456799999999999999999999999999999999998765 58999999952 211 1 12 2579999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000517 940 EQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANP 1019 (1449)
Q Consensus 940 ~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p 1019 (1449)
+|+..++|.+||+||+.|+...+ .....+..+.++++++.+||.+..+..++ .||||||||++|||||+.+|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999876543 23345566788999999999988887754 79999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1020 SIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1020 ~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
+||+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|+ +|+++..|+++
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~-~G~iv~~g~~~ 250 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIME-GGRIIQHGTPE 250 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEecCHH
Confidence 999999999999999999999999999765 999999999986 5778999999997 58999999874
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=335.36 Aligned_cols=204 Identities=24% Similarity=0.342 Sum_probs=172.0
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCC-ccCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQND-LHIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 260 (1449)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++ ..++.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 4899999999999999999999999999999999999997 9999999998764322 35799999986 367789
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
||+||+.|+....+.. +.+ .+..++.+++.+||++..+..+++
T Consensus 98 tv~eni~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~--- 140 (279)
T PRK13650 98 TVEDDVAFGLENKGIP----------HEE------------------------MKERVNEALELVGMQDFKEREPAR--- 140 (279)
T ss_pred cHHHHHHhhHHhCCCC----------HHH------------------------HHHHHHHHHHHCCCHhHhhCCccc---
Confidence 9999999875432211 000 011346789999999888887765
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+ .+++ ..+|+|++|++|
T Consensus 141 --LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~-~~~~-~~~dri~~l~~G 216 (279)
T PRK13650 141 --LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD-LDEV-ALSDRVLVMKNG 216 (279)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHH-HhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999976557788877665 4556 589999999999
Q ss_pred eEEEecChhhHH
Q 000517 421 KIVYHGPQDHVL 432 (1449)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1449)
+++..|+++++.
T Consensus 217 ~i~~~g~~~~~~ 228 (279)
T PRK13650 217 QVESTSTPRELF 228 (279)
T ss_pred EEEEECCHHHHH
Confidence 999999988765
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=334.23 Aligned_cols=206 Identities=28% Similarity=0.399 Sum_probs=172.6
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---ccccceEEEEccCCCCCCCC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNI 949 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~l 949 (1449)
++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|+..+++.+
T Consensus 14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 34699999999999999999999999999999999997654 58999999986432 23456799999998888889
Q ss_pred CHHHHHHHHHHhccC-CCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000517 950 TVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028 (1449)
Q Consensus 950 Tv~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPT 1028 (1449)
|+.||+.++...... .........+.++++++.++|.+..++.++ .||||||||++||+||+.+|++|+|||||
T Consensus 92 tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEP~ 166 (255)
T PRK11231 92 TVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLT-----DLSGGQRQRAFLAMVLAQDTPVVLLDEPT 166 (255)
T ss_pred cHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999999875211000 011112334568899999999887777653 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1029 TGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1029 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|. +|+++..|+.+
T Consensus 167 ~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 223 (255)
T PRK11231 167 TYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLA-NGHVMAQGTPE 223 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEE-CCeEEEEcCHH
Confidence 999999999999999998777999999999986 5778999999997 58999998864
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=332.70 Aligned_cols=206 Identities=24% Similarity=0.379 Sum_probs=172.5
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC------CCceEEEEcCCCccCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV------PPKTSAYISQNDLHIA 258 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~~ 258 (1449)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+++
T Consensus 21 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (269)
T PRK11831 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFT 97 (269)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccCC
Confidence 5899999999999999999999999999999999999987 999999998875432 1356999999988899
Q ss_pred CCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 259 EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
.+||+||+.+....... . .+.+ ....++.+++.+||++..++.+++
T Consensus 98 ~~tv~enl~~~~~~~~~-~--------~~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~- 143 (269)
T PRK11831 98 DMNVFDNVAYPLREHTQ-L--------PAPL------------------------LHSTVMMKLEAVGLRGAAKLMPSE- 143 (269)
T ss_pred CCCHHHHHHHHHHHccC-C--------CHHH------------------------HHHHHHHHHHHcCChhhhhCChhh-
Confidence 99999999886432100 0 0000 011245678999999888888766
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++. |..+++.+++|++++|+
T Consensus 144 ----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivs-H~~~~~~~~~d~v~~l~ 218 (269)
T PRK11831 144 ----LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVS-HDVPEVLSIADHAYIVA 218 (269)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEe-cCHHHHHHhhCEEEEEE
Confidence 9999999999999999999999999999999999999999999998764466766654 55678889999999999
Q ss_pred CCeEEEecChhhHH
Q 000517 419 EGKIVYHGPQDHVL 432 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1449)
+|++++.|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (269)
T PRK11831 219 DKKIVAHGSAQALQ 232 (269)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988764
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=333.91 Aligned_cols=218 Identities=25% Similarity=0.330 Sum_probs=180.3
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEEh
Confidence 567777776542 24699999999999999999999999999999999998654 489999999865
Q ss_pred cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccC-CCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000517 928 VQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLST 1003 (1449)
Q Consensus 928 ~~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1003 (1449)
.. ..+++.++|++|++.+++..|++||+.+...-... .....+..++.++++++.++|.+..++.+ +.|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCh
Confidence 32 23456799999999988899999999764211100 00011233456889999999988777765 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEE
Q 000517 1004 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIY 1082 (1449)
Q Consensus 1004 GqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~ 1082 (1449)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.+.+|++++|. +|++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALR-EGKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999986 5788999999997 589999
Q ss_pred ecCCC
Q 000517 1083 CGPLG 1087 (1449)
Q Consensus 1083 ~G~~~ 1087 (1449)
.|+..
T Consensus 225 ~g~~~ 229 (265)
T PRK10253 225 QGAPK 229 (265)
T ss_pred eCCHH
Confidence 99864
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=327.15 Aligned_cols=202 Identities=28% Similarity=0.421 Sum_probs=170.6
Q ss_pred cccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc--ccccceEEEEc-cCCCCCC
Q 000517 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ--ETFARVSGYCE-QTDIHSP 947 (1449)
Q Consensus 871 ~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~-Q~d~~~~ 947 (1449)
++.+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++ |++.+++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 4456799999999999999999999999999999999997655 58999999976422 23456799997 5567778
Q ss_pred CCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000517 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1027 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEP 1027 (1449)
.+|++|++.+...++. ...++..+.++++++.++|.+..++.++ .||||||||++||++|+.+|++|+||||
T Consensus 109 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8999999988654431 2233445567889999999888887754 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1028 TTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1028 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +|++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVID-KGRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEecC
Confidence 9999999999999999999764 899999999986 5678899999997 58988765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=335.52 Aligned_cols=218 Identities=27% Similarity=0.396 Sum_probs=179.0
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|+++.+ +++.+|+|+||++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 11 ~l~i~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRV-------------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEE-------------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEeh
Confidence 36677776543 234699999999999999999999999999999999997654 589999999764
Q ss_pred c---cccccceEEEEccCCCCCCCCCHHHHHHHHHHhccC-CCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000517 928 V---QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLST 1003 (1449)
Q Consensus 928 ~---~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1003 (1449)
. ...+++.++|++|+..+++.+|+.||+.+....... ........++.++++++.++|.+..++.++ .|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD-----SLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCH
Confidence 2 223456799999998888899999999875321100 001112334568899999999887777754 7999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEE
Q 000517 1004 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIY 1082 (1449)
Q Consensus 1004 GqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~ 1082 (1449)
|||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~-~G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALR-GGEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999986 5778899999997 589999
Q ss_pred ecCCC
Q 000517 1083 CGPLG 1087 (1449)
Q Consensus 1083 ~G~~~ 1087 (1449)
.|+..
T Consensus 229 ~~~~~ 233 (265)
T PRK10575 229 QGTPA 233 (265)
T ss_pred ecCHH
Confidence 98864
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=328.37 Aligned_cols=201 Identities=22% Similarity=0.343 Sum_probs=167.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-------CceEEEEcCCCcc
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-------PKTSAYISQNDLH 256 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1449)
.++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|+++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 35999999999999999999999999999999999999987 9999999998765432 2469999999888
Q ss_pred CCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccc
Q 000517 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVG 336 (1449)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 336 (1449)
++.+||+||+.+.....+... .+ .+..++.+++.+||++..++.++
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------AE------------------------INSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhCChh
Confidence 999999999998654321100 00 01124668899999887777766
Q ss_pred ccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEE
Q 000517 337 NAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416 (1449)
Q Consensus 337 ~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~l 416 (1449)
+ ||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|+ .+++.. +|++++
T Consensus 145 ~-----LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~-~~~~~~-~~~~~~ 217 (233)
T PRK11629 145 E-----LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD-LQLAKR-MSRQLE 217 (233)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHh-hCEEEE
Confidence 5 999999999999999999999999999999999999999999999876456777776655 455554 589999
Q ss_pred EeCCeEEEecCh
Q 000517 417 MAEGKIVYHGPQ 428 (1449)
Q Consensus 417 L~~G~iv~~G~~ 428 (1449)
|++|+++..|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999988864
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=322.61 Aligned_cols=197 Identities=24% Similarity=0.396 Sum_probs=166.2
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCCccCCCCCHHH
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRE 264 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (1449)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+|
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHH
Confidence 5899999999999999999999999999999999999987 9999999987754 23467999999998899999999
Q ss_pred HHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCC
Q 000517 265 TVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGIS 344 (1449)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlS 344 (1449)
|+.+.....+... .+ ....++++++.+||++..++.+++ ||
T Consensus 90 ~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS 130 (210)
T cd03269 90 QLVYLAQLKGLKK----------EE------------------------ARRRIDEWLERLELSEYANKRVEE-----LS 130 (210)
T ss_pred HHHHHHHHcCCCh----------HH------------------------HHHHHHHHHHHcCChHHHhCcHhh-----CC
Confidence 9988654332110 00 011246678999998877877765 99
Q ss_pred hhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEEE
Q 000517 345 GGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVY 424 (1449)
Q Consensus 345 GGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv~ 424 (1449)
|||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.+ .++|++++ +|..+++.+++|++++|++|++++
T Consensus 131 ~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~-sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 131 KGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILS-THQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE-CCCHHHHHHhhhEEEEEeCCEEEe
Confidence 9999999999999999999999999999999999999999999875 36666665 455667888999999999999987
Q ss_pred ec
Q 000517 425 HG 426 (1449)
Q Consensus 425 ~G 426 (1449)
.|
T Consensus 209 ~~ 210 (210)
T cd03269 209 YG 210 (210)
T ss_pred cC
Confidence 64
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=327.70 Aligned_cols=201 Identities=24% Similarity=0.331 Sum_probs=168.2
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccc----cccceEEEEccCCCCCCC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQE----TFARVSGYCEQTDIHSPN 948 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q~d~~~~~ 948 (1449)
++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+.... ..++.++|++|++.+++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 34699999999999999999999999999999999998664 589999999875321 134579999999999999
Q ss_pred CCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000517 949 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1027 (1449)
Q Consensus 949 lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEP 1027 (1449)
+|+.||+.+....+. .. ..+.++++++.++ +.+..++.+ ..||||||||++||++|+.+|++++||||
T Consensus 90 ~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~illlDEP 158 (230)
T TIGR03410 90 LTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRG-----GDLSGGQQQQLAIARALVTRPKLLLLDEP 158 (230)
T ss_pred CcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 999999988654321 11 2234567777776 555566654 37999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCC
Q 000517 1028 TTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGK 1088 (1449)
Q Consensus 1028 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~ 1088 (1449)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|++++.|+.++
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~g~i~~~~~~~~ 218 (230)
T TIGR03410 159 TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVME-RGRVVASGAGDE 218 (230)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCHHH
Confidence 9999999999999999998764 899999999986 5667899999997 589999998753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=372.78 Aligned_cols=135 Identities=21% Similarity=0.320 Sum_probs=108.9
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 000517 945 HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI-KDSLVGIPGVNGLSTEQRKRLTIAVELV---ANPS 1020 (1449)
Q Consensus 945 ~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~Ia~aL~---~~p~ 1020 (1449)
.+...||.|+|.++..-........++..+.+ ++++.+||.+. .+..+ ..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999887552221111223344556 47899999875 56654 379999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe-----cCcEEEEecCCC
Q 000517 1021 IIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK-----TGGRIIYCGPLG 1087 (1449)
Q Consensus 1021 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~-----~gG~~v~~G~~~ 1087 (1449)
+++|||||+|||+.+...+++.|+++++.|.|||+++|++. .+ ..+|+++.|. .+|+++..|+++
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999999888999999999986 34 8999999995 368999999874
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=330.62 Aligned_cols=216 Identities=22% Similarity=0.305 Sum_probs=176.3
Q ss_pred cEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCC--C-CeeEEEEEEc
Q 000517 847 LTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT--S-GYVEGEIKIS 923 (1449)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i~ 923 (1449)
..+.++|+++.++ +..+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++
T Consensus 12 ~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~ 78 (260)
T PRK10744 12 SKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLD 78 (260)
T ss_pred ceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEEC
Confidence 3577888876542 2359999999999999999999999999999999999754 2 1358999999
Q ss_pred CccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----ccccccc
Q 000517 924 GYPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVG 994 (1449)
Q Consensus 924 G~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg 994 (1449)
|.+... ..+++.++|++|+..+++ .|++||+.+...... ..+.+..++.++++++.+++.+ ..+..
T Consensus 79 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 153 (260)
T PRK10744 79 GENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS-- 153 (260)
T ss_pred CEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC--
Confidence 987531 234677999999988777 899999987653321 1233444567889999999842 33443
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEE
Q 000517 995 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILL 1074 (1449)
Q Consensus 995 ~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l 1074 (1449)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ ++.|||++||++. ++.+.+|++++|
T Consensus 154 ---~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l 228 (260)
T PRK10744 154 ---GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAFM 228 (260)
T ss_pred ---CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 34799999999999999999999999999999999999999999999986 4789999999986 566789999999
Q ss_pred ecCcEEEEecCC
Q 000517 1075 KTGGRIIYCGPL 1086 (1449)
Q Consensus 1075 ~~gG~~v~~G~~ 1086 (1449)
. +|+++..|+.
T Consensus 229 ~-~G~i~~~g~~ 239 (260)
T PRK10744 229 Y-LGELIEFGNT 239 (260)
T ss_pred E-CCEEEEeCCH
Confidence 8 5899999875
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=332.12 Aligned_cols=203 Identities=23% Similarity=0.313 Sum_probs=169.8
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCc-cCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDL-HIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 260 (1449)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++..
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 4899999999999999999999999999999999999997 9999999998754321 356999999863 45678
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
||+||+.|+....+.. +.+ .+..++.+++.+||.+..++.+.+
T Consensus 96 tv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~~--- 138 (274)
T PRK13647 96 TVWDDVAFGPVNMGLD----------KDE------------------------VERRVEEALKAVRMWDFRDKPPYH--- 138 (274)
T ss_pred cHHHHHHhhHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCHHHhcCChhh---
Confidence 9999999865422110 000 011346688999998888888775
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +.|+|++. |..+++.++||+|++|++|
T Consensus 139 --LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~t-H~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 139 --LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVAT-HDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEe-CCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999998753 66766654 5567788999999999999
Q ss_pred eEEEecChhhH
Q 000517 421 KIVYHGPQDHV 431 (1449)
Q Consensus 421 ~iv~~G~~~~~ 431 (1449)
++++.|+++++
T Consensus 215 ~i~~~g~~~~~ 225 (274)
T PRK13647 215 RVLAEGDKSLL 225 (274)
T ss_pred EEEEECCHHHh
Confidence 99999998654
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=346.82 Aligned_cols=209 Identities=25% Similarity=0.435 Sum_probs=175.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1449)
+++|+|+|+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 35999999999999999999999999999999999999997 9999999998765432 46799999999888999
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
||+||+.++..-... ... .... .....++++++.+||.+..|+.+.+
T Consensus 93 tv~e~v~~~~~~~~~--~~~---~~~~-------------------------~~~~~v~~~le~vgl~~~~~~~~~~--- 139 (402)
T PRK09536 93 DVRQVVEMGRTPHRS--RFD---TWTE-------------------------TDRAAVERAMERTGVAQFADRPVTS--- 139 (402)
T ss_pred CHHHHHHhccchhcc--ccc---CCCH-------------------------HHHHHHHHHHHHcCCchhhcCChhh---
Confidence 999999885421100 000 0000 0112357789999999888888765
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
|||||||||.|||||+++|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++ +|..+++.++||++++|++|
T Consensus 140 --LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIiv-sHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 140 --LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAA-IHDLDLAARYCDELVLLADG 215 (402)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEE-ECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999986 46676665 56678899999999999999
Q ss_pred eEEEecChhhHH
Q 000517 421 KIVYHGPQDHVL 432 (1449)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1449)
++++.|+++++.
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999998864
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=327.04 Aligned_cols=195 Identities=27% Similarity=0.435 Sum_probs=163.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC-------CCceEEEEcCCCcc
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV-------PPKTSAYISQNDLH 256 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~ 256 (1449)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999999987 999999998876432 13579999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccc
Q 000517 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVG 336 (1449)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 336 (1449)
++.+||+||+.++....+... .+ .+..++.+++.+||++..++.++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 139 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------KE------------------------RRERAEELLERVGLGDRLNHYPS 139 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhcChh
Confidence 999999999998764332100 00 01124668899999887787776
Q ss_pred ccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEE
Q 000517 337 NAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416 (1449)
Q Consensus 337 ~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~l 416 (1449)
+ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++ +++. .||++++
T Consensus 140 ~-----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~-~~d~v~~ 212 (218)
T cd03255 140 E-----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAE-YADRIIE 212 (218)
T ss_pred h-----cCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHh-hhcEEEE
Confidence 5 9999999999999999999999999999999999999999999998764467777766554 4565 9999999
Q ss_pred EeCCeE
Q 000517 417 MAEGKI 422 (1449)
Q Consensus 417 L~~G~i 422 (1449)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=335.98 Aligned_cols=200 Identities=26% Similarity=0.383 Sum_probs=168.0
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-------ccccceEEEEccCC--C
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-------ETFARVSGYCEQTD--I 944 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~~gyv~Q~d--~ 944 (1449)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++ .
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ 97 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccCHHHHHhheEEEeeChhhh
Confidence 3599999999999999999999999999999999998655 58999999987532 23456799999986 3
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000517 945 HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIF 1023 (1449)
Q Consensus 945 ~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~ill 1023 (1449)
++ ..||+||+.+..... ....+...+.++++++.++|.+ ..+..+ ..||||||||++||++|+.+|++|+
T Consensus 98 ~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lll 168 (280)
T PRK13649 98 LF-EETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNP-----FELSGGQMRRVAIAGILAMEPKILV 168 (280)
T ss_pred hc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 44 469999998764332 1223344566788999999973 456554 3799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1024 MDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1024 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|+.
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 229 (280)
T PRK13649 169 LDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLE-KGKLVLSGKP 229 (280)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 99999999999999999999999877999999999986 5667899999998 5899998875
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=315.84 Aligned_cols=190 Identities=57% Similarity=0.952 Sum_probs=159.9
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++++|+++.++.. .+++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 35677777665321 012469999999999999999999999999999999999743223689999999876
Q ss_pred ccccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000517 928 VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRK 1007 (1449)
Q Consensus 928 ~~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1007 (1449)
. ..+++.++|++|++.+++.+|++||+.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 4 345667999999998899999999998642110 49999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1008 RLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1008 Rl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
|++||++|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||++||+++.++.+.+|++++|.++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999987799999999998644678899999997448999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=332.56 Aligned_cols=206 Identities=29% Similarity=0.427 Sum_probs=172.3
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---ccccceEEEEccCCCCCCCC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNI 949 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~l 949 (1449)
++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+
T Consensus 13 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 34699999999999999999999999999999999997654 58999999987532 23455689999998777889
Q ss_pred CHHHHHHHHHH-hccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000517 950 TVEESVIFSAW-LRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028 (1449)
Q Consensus 950 Tv~e~l~f~~~-lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPT 1028 (1449)
||.||+.+... .+...........+.+.++++.+++.+..++.++ .||||||||++||++|+.+|++++|||||
T Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt 165 (256)
T TIGR03873 91 TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS-----TLSGGERQRVHVARALAQEPKLLLLDEPT 165 (256)
T ss_pred CHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 99999987521 1100001112334568899999999887777654 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1029 TGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1029 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
+|||+.+...+.+.|+++.++|.|||+++|+++ ++.+.+|++++|. +|+++..|+.+
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 222 (256)
T TIGR03873 166 NHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLD-GGRVVAAGPPR 222 (256)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCCEEEecCHH
Confidence 999999999999999999877899999999986 5778899999997 58999999864
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=324.68 Aligned_cols=213 Identities=27% Similarity=0.392 Sum_probs=174.4
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|+++.++.. .....+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEc
Confidence 36777877654311 0013599999999999999999999999999999999998655 589999999875
Q ss_pred ccc---c---c-cceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000517 928 VQE---T---F-ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNG 1000 (1449)
Q Consensus 928 ~~~---~---~-~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1000 (1449)
... . . ++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.++|.+..+..++ .
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLPA-----Q 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCChh-----h
Confidence 321 1 1 3579999999988899999999988654321 2233445678999999999887777653 7
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcE
Q 000517 1001 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079 (1449)
Q Consensus 1001 LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~ 1079 (1449)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|+++ .+ +.+|++++|. +|+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~-~g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLV-NGQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCE
Confidence 9999999999999999999999999999999999999999999999754 899999999986 34 5699999997 588
Q ss_pred EEE
Q 000517 1080 IIY 1082 (1449)
Q Consensus 1080 ~v~ 1082 (1449)
+++
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 864
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=321.44 Aligned_cols=190 Identities=26% Similarity=0.382 Sum_probs=162.4
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc---c----ccccceEEEEccCCCC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV---Q----ETFARVSGYCEQTDIH 945 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~---~----~~~~~~~gyv~Q~d~~ 945 (1449)
++.+|+|+||++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.. . ...++.++|++|++.+
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 34699999999999999999999999999999999998664 5899999998732 1 1245679999999998
Q ss_pred CCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000517 946 SPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1025 (1449)
Q Consensus 946 ~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLD 1025 (1449)
++.+|++||+.+....+ ........+.++++++.++|.+..++.+. .||||||||++||++|+.+|++|+||
T Consensus 88 ~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qr~~laral~~~p~llllD 159 (206)
T TIGR03608 88 IENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIY-----ELSGGEQQRVALARAILKDPPLILAD 159 (206)
T ss_pred ccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 88999999999865432 12234445678899999999887777653 79999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEE
Q 000517 1026 EPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILL 1074 (1449)
Q Consensus 1026 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l 1074 (1449)
|||+|||+.+...+.+.|+++.++|.|||+++|++. ..+.+|++++|
T Consensus 160 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 160 EPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 999999999999999999999777999999999975 34678998764
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=324.51 Aligned_cols=202 Identities=25% Similarity=0.452 Sum_probs=168.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCccCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 260 (1449)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 5899999999999999999999999999999999999987 9999999988754332 35699999999999999
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHh-CCCccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKIL-GLDVCADTMVGNAM 339 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~l-gL~~~~dt~vg~~~ 339 (1449)
||+||+.+.....+ .. + .....+.+++.+ ++++..++.+++
T Consensus 91 t~~~~l~~~~~~~~--~~-----~-----------------------------~~~~~~~~l~~~~~l~~~~~~~~~~-- 132 (222)
T cd03224 91 TVEENLLLGAYARR--RA-----K-----------------------------RKARLERVYELFPRLKERRKQLAGT-- 132 (222)
T ss_pred cHHHHHHHHhhhcC--ch-----h-----------------------------HHHHHHHHHHHHHhhhhhhhCchhh--
Confidence 99999988654321 00 0 001134456666 466666777665
Q ss_pred cccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeC
Q 000517 340 RRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419 (1449)
Q Consensus 340 ~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~ 419 (1449)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++. |...++.+++|++++|++
T Consensus 133 ---LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~s-H~~~~~~~~~d~i~~l~~ 207 (222)
T cd03224 133 ---LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVE-QNARFALEIADRAYVLER 207 (222)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhccEEEEeeC
Confidence 999999999999999999999999999999999999999999999875 466766665 556788899999999999
Q ss_pred CeEEEecChhhHH
Q 000517 420 GKIVYHGPQDHVL 432 (1449)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1449)
|+++..|+.+++.
T Consensus 208 G~i~~~~~~~~~~ 220 (222)
T cd03224 208 GRVVLEGTAAELL 220 (222)
T ss_pred CeEEEeCCHHHHh
Confidence 9999999987653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=324.51 Aligned_cols=203 Identities=33% Similarity=0.557 Sum_probs=169.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC---CCCCeeeEEEECCccCCCCCCCceEEEEcCCCccCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD---PSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~---~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 260 (1449)
+++|+|+|+++++||+++|+||||||||||+++|+|.++ |+ +|+|.++|+++.....++.++|++|++.+++.+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCC
Confidence 569999999999999999999999999999999999998 66 999999998875433456799999999999999
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHH-HHHHhCCCccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDY-ILKILGLDVCADTMVGNAM 339 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~-il~~lgL~~~~dt~vg~~~ 339 (1449)
||+||+.|+.......... ... .....+. .++.+++.+..++.+++
T Consensus 97 tv~enl~~~~~~~~~~~~~-------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (226)
T cd03234 97 TVRETLTYTAILRLPRKSS-------DAI------------------------RKKRVEDVLLRDLALTRIGGNLVKG-- 143 (226)
T ss_pred cHHHHHHHHHHhhcccccc-------hHH------------------------HHHHHHHHHHHhhcchhhhcccccC--
Confidence 9999999876533211000 000 0001233 78888888777777665
Q ss_pred cccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeC
Q 000517 340 RRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419 (1449)
Q Consensus 340 ~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~ 419 (1449)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++..++.+++|++++|++
T Consensus 144 ---LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~ 219 (226)
T cd03234 144 ---ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSS 219 (226)
T ss_pred ---cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999865 4778888877766789999999999999
Q ss_pred CeEEEec
Q 000517 420 GKIVYHG 426 (1449)
Q Consensus 420 G~iv~~G 426 (1449)
|+++++|
T Consensus 220 G~i~~~g 226 (226)
T cd03234 220 GEIVYSG 226 (226)
T ss_pred CEEEecC
Confidence 9999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=337.23 Aligned_cols=221 Identities=19% Similarity=0.275 Sum_probs=178.2
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCC-C-eeEEEEEEcCcc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTS-G-YVEGEIKISGYP 926 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~-~-~~~G~I~i~G~~ 926 (1449)
++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|...+ + ..+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 5667776654321 1124699999999999999999999999999999999997643 1 358999999987
Q ss_pred Ccc---cc----ccceEEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccc---cccccc
Q 000517 927 KVQ---ET----FARVSGYCEQTD--IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI---KDSLVG 994 (1449)
Q Consensus 927 ~~~---~~----~~~~~gyv~Q~d--~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~---~~~~vg 994 (1449)
+.. .. .++.++|++|++ .+.|.+|+.+++........ ....++.++.+.++++.+||.+. .+..
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-- 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY-- 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC--
Confidence 532 11 224699999997 47889999998876543321 22345556788999999999752 3433
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEE
Q 000517 995 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELIL 1073 (1449)
Q Consensus 995 ~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~ 1073 (1449)
+.+|||||||||+||+||+.+|++|++||||+|||+.++..+++.|+++.+ .|.|+|++||+++ .+.+.+|++++
T Consensus 151 ---p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~v 226 (326)
T PRK11022 151 ---PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIV 226 (326)
T ss_pred ---chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999976 4899999999986 46678999999
Q ss_pred EecCcEEEEecCCC
Q 000517 1074 LKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1074 l~~gG~~v~~G~~~ 1087 (1449)
|. +|++++.|+..
T Consensus 227 m~-~G~ive~g~~~ 239 (326)
T PRK11022 227 MY-AGQVVETGKAH 239 (326)
T ss_pred EE-CCEEEEECCHH
Confidence 98 59999999863
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=332.29 Aligned_cols=202 Identities=28% Similarity=0.370 Sum_probs=171.1
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-----ccccceEEEEccCCC-CCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-----ETFARVSGYCEQTDI-HSP 947 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-----~~~~~~~gyv~Q~d~-~~~ 947 (1449)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 3599999999999999999999999999999999997654 48999999987531 124567999999963 334
Q ss_pred CCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000517 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1027 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEP 1027 (1449)
..||.||+.+..... ....++..+.+.++++.++|.+..++.++ .||||||||++|||+|+.+|++|+||||
T Consensus 93 ~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS~Gq~qrv~laral~~~p~llllDEP 164 (275)
T PRK13639 93 APTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPH-----HLSGGQKKRVAIAGILAMKPEIIVLDEP 164 (275)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 579999998764321 12334445678899999999888887754 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1028 TTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1028 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
|+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|+ +|++++.|+.+
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 222 (275)
T PRK13639 165 TSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMS-DGKIIKEGTPK 222 (275)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 9999999999999999999877999999999976 5677899999998 58999999863
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=327.97 Aligned_cols=219 Identities=25% Similarity=0.332 Sum_probs=174.4
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCC--C-CeeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT--S-GYVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i~G 924 (1449)
.+.++|+++++. ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14242 6 KMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG 72 (253)
T ss_pred EEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECC
Confidence 467778776542 2359999999999999999999999999999999999642 1 12589999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVN 999 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 999 (1449)
.+... ..+++.++|++|++.+++ .||+||+.+....+.. ...+...+.++++++.+++.+........ ...
T Consensus 73 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 148 (253)
T PRK14242 73 ENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHE-SAL 148 (253)
T ss_pred EEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhC-Ccc
Confidence 87532 234567999999988887 5999999887543311 12233456788899999985421111111 134
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcE
Q 000517 1000 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079 (1449)
Q Consensus 1000 ~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~ 1079 (1449)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|. +|+
T Consensus 149 ~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~-~G~ 225 (253)
T PRK14242 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFY-MGK 225 (253)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEE-CCE
Confidence 7999999999999999999999999999999999999999999999854 799999999986 4678899999997 589
Q ss_pred EEEecCC
Q 000517 1080 IIYCGPL 1086 (1449)
Q Consensus 1080 ~v~~G~~ 1086 (1449)
++..|+.
T Consensus 226 i~~~g~~ 232 (253)
T PRK14242 226 LIEVGPT 232 (253)
T ss_pred EEEeCCH
Confidence 9998875
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=319.93 Aligned_cols=170 Identities=24% Similarity=0.346 Sum_probs=135.2
Q ss_pred ceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCCCCCCHHHHHHHHH
Q 000517 880 VTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSA 959 (1449)
Q Consensus 880 vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~ 959 (1449)
=.++|..||+++++||||-||||+.++|+|..+| .+|+ ..+ -.++|=||--.-....||++-|.-..
T Consensus 360 ~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~~-------~~vSyKPQyI~~~~~gtV~~~l~~~~ 426 (591)
T COG1245 360 EEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EED-------LKVSYKPQYISPDYDGTVEDLLRSAI 426 (591)
T ss_pred cCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Ccc-------ceEeecceeecCCCCCcHHHHHHHhh
Confidence 3567889999999999999999999999998776 3565 111 23678888655556789999875432
Q ss_pred HhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 000517 960 WLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1039 (1449)
Q Consensus 960 ~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i 1039 (1449)
.-+.. ..-...++++-|+|+++.+..+. +|||||.|||+||.+|.+++++.+||||++.||++.+..+
T Consensus 427 ~~~~~-------~s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~v 494 (591)
T COG1245 427 RSAFG-------SSYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494 (591)
T ss_pred hhhcc-------cchhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHH
Confidence 21111 11234678889999999998865 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 1040 MRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 1040 ~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
-+.||++.. +++|.+++-||..+ +--..|++++..
T Consensus 495 akvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 495 AKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999975 48899999999753 444567777764
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=320.84 Aligned_cols=195 Identities=29% Similarity=0.432 Sum_probs=166.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCC-CCCceEEEEcCCCccCCCCCH
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF-VPPKTSAYISQNDLHIAEMTV 262 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV 262 (1449)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 35999999999999999999999999999999999999987 99999999876532 124569999999988999999
Q ss_pred HHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccccc
Q 000517 263 RETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG 342 (1449)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 342 (1449)
+||+.+.....+. .+..++.+++.+||++..++.+++
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKVKG----- 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhHhh-----
Confidence 9999886532210 001245678899998877877765
Q ss_pred CChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeE
Q 000517 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422 (1449)
Q Consensus 343 lSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~i 422 (1449)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|++. |..+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~t-H~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISS-HLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEc-CCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876 567776665 556678889999999999999
Q ss_pred EEec
Q 000517 423 VYHG 426 (1449)
Q Consensus 423 v~~G 426 (1449)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=364.03 Aligned_cols=221 Identities=22% Similarity=0.322 Sum_probs=183.9
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|+++++ +++.+|+||||+|++||+++|+||||||||||+++|+|...+++.+|+|.++|.+..
T Consensus 6 l~~~nl~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 72 (506)
T PRK13549 6 LEMKNITKTF-------------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ 72 (506)
T ss_pred EEEeeeEEEe-------------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 6677777654 234699999999999999999999999999999999998654335899999998753
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000517 929 QE----TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTE 1004 (1449)
Q Consensus 929 ~~----~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1004 (1449)
.. ..++.+||++|++.+++.+||+||+.+....+.......+...+.++++++.++|.+..++.++ .||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 147 (506)
T PRK13549 73 ASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG-----NLGLG 147 (506)
T ss_pred CCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCHH
Confidence 21 2346699999999888999999999886433211111233345678899999999887787754 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1005 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1005 qrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
||||++||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++||+++ .+.+.+|++++|. +|++++.|
T Consensus 148 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~-~G~i~~~~ 225 (506)
T PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIR-DGRHIGTR 225 (506)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEE-CCEEeeec
Confidence 999999999999999999999999999999999999999999877999999999986 5677899999998 58999999
Q ss_pred CCCCC
Q 000517 1085 PLGKH 1089 (1449)
Q Consensus 1085 ~~~~~ 1089 (1449)
+..+.
T Consensus 226 ~~~~~ 230 (506)
T PRK13549 226 PAAGM 230 (506)
T ss_pred ccccC
Confidence 88653
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=327.87 Aligned_cols=206 Identities=27% Similarity=0.415 Sum_probs=171.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1449)
..+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 35899999999999999999999999999999999999987 9999999988754322 35789999999999999
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc--ccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV--CADTMVGNA 338 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~--~~dt~vg~~ 338 (1449)
||+||+.+.....+... .+ ....++++++.+||++ ..++.+.+
T Consensus 91 tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~l~l~~~~~~~~~~~~- 135 (242)
T cd03295 91 TVEENIALVPKLLKWPK----------EK------------------------IRERADELLALVGLDPAEFADRYPHE- 135 (242)
T ss_pred cHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCCcHHHHhcChhh-
Confidence 99999988654322100 00 0112456789999985 56666654
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.| ...++.+++|+|++|+
T Consensus 136 ----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH-~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 136 ----LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTH-DIDEAFRLADRIAIMK 210 (242)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEec-CHHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999987644677766655 4567889999999999
Q ss_pred CCeEEEecChhhHH
Q 000517 419 EGKIVYHGPQDHVL 432 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1449)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999887763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=328.35 Aligned_cols=214 Identities=25% Similarity=0.403 Sum_probs=172.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC------CCceEEEEcCCCccC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV------PPKTSAYISQNDLHI 257 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1449)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 35999999999999999999999999999999999999987 999999998876532 135699999999889
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGN 337 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 337 (1449)
+.+||+||+.++..... .. .... .+..+ + .....++.+++.+||.+..++.+++
T Consensus 91 ~~~tv~~~l~~~~~~~~-~~----~~~~------~~~~~--~-------------~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (241)
T cd03256 91 ERLSVLENVLSGRLGRR-ST----WRSL------FGLFP--K-------------EEKQRALAALERVGLLDKAYQRADQ 144 (241)
T ss_pred ccCcHHHHHHhhhcccc-hh----hhhh------cccCc--H-------------HHHHHHHHHHHHcCChhhhCCCccc
Confidence 99999999987542110 00 0000 00000 0 0012345678999998777777655
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL 417 (1449)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++. |..+++.+++|++++|
T Consensus 145 -----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~t-H~~~~~~~~~d~v~~l 218 (241)
T cd03256 145 -----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSL-HQVDLAREYADRIVGL 218 (241)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998765567766655 5566788899999999
Q ss_pred eCCeEEEecChhhHH
Q 000517 418 AEGKIVYHGPQDHVL 432 (1449)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1449)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=328.70 Aligned_cols=203 Identities=21% Similarity=0.317 Sum_probs=167.8
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCC-CeeEEEEEEcCccCcc---ccccceEEEEccCCCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTS-GYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNI 949 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~-~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~l 949 (1449)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|.+... ..+++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 4699999999999999999999999999999999997532 2358999999987542 234667999999988887 6
Q ss_pred CHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000517 950 TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1025 (1449)
Q Consensus 950 Tv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLD 1025 (1449)
|++||+.+....+.... .....++.++++++.++|.+ ..+.. ...||||||||++|||+|+.+|++|+||
T Consensus 94 tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLD 167 (246)
T PRK14269 94 SIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQN-----ALALSGGQQQRLCIARALAIKPKLLLLD 167 (246)
T ss_pred cHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999988654431101 12334456788999999953 23332 3479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1026 EPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1026 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|. +|++++.|+.
T Consensus 168 EP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 225 (246)
T PRK14269 168 EPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFH-LGELIEFGES 225 (246)
T ss_pred CCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEE-CCEEEEECCH
Confidence 99999999999999999999864 899999999986 4778899999998 5899999875
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=331.56 Aligned_cols=216 Identities=23% Similarity=0.362 Sum_probs=179.2
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Confidence 4677787765421 134699999999999999999999999999999999998654 489999999876
Q ss_pred cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000517 928 VQ---ETFARVSGYCEQTDI-HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLST 1003 (1449)
Q Consensus 928 ~~---~~~~~~~gyv~Q~d~-~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1003 (1449)
.. ..+++.+||++|++. .++.+||+||+.+..... ....+...+.++++++.++|.+..++.++ .|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQ-----NLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcc-----cCCH
Confidence 42 235677999999974 567799999998864322 12234445678899999999887777754 7999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEE
Q 000517 1004 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIY 1082 (1449)
Q Consensus 1004 GqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~ 1082 (1449)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|+++. + ..+|++++|. +|+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~-~G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFS-EGKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999766 5999999999863 4 4799999997 589999
Q ss_pred ecCCC
Q 000517 1083 CGPLG 1087 (1449)
Q Consensus 1083 ~G~~~ 1087 (1449)
.|+.+
T Consensus 223 ~g~~~ 227 (271)
T PRK13632 223 QGKPK 227 (271)
T ss_pred ecCHH
Confidence 98763
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=331.74 Aligned_cols=203 Identities=23% Similarity=0.336 Sum_probs=170.5
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccc------cccceEEEEccCC--CC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQE------TFARVSGYCEQTD--IH 945 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~------~~~~~~gyv~Q~d--~~ 945 (1449)
+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+.... .+++.++|++|++ .+
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV 101 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhc
Confidence 5699999999999999999999999999999999998654 589999999875321 2456799999996 46
Q ss_pred CCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000517 946 SPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 1024 (1449)
Q Consensus 946 ~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illL 1024 (1449)
.+.+||+||+.+..... ........++.++++++.+||. +..+..+ ..||||||||++|||||+.+|++|+|
T Consensus 102 ~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGe~qrv~laral~~~p~illL 174 (265)
T TIGR02769 102 NPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLP-----RQLSGGQLQRINIARALAVKPKLIVL 174 (265)
T ss_pred CCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 67899999997754321 1122334456788999999996 5666654 37999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.+|++++|. +|++++.|+..
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 236 (265)
T TIGR02769 175 DEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMD-KGQIVEECDVA 236 (265)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEe-CCEEEEECCHH
Confidence 9999999999999999999999765 899999999986 5667899999997 58999999863
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=333.72 Aligned_cols=205 Identities=21% Similarity=0.310 Sum_probs=169.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC-------CCceEEEEcCCC--
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV-------PPKTSAYISQND-- 254 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d-- 254 (1449)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 35999999999999999999999999999999999999998 999999999875421 245799999985
Q ss_pred ccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC-ccccc
Q 000517 255 LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD-VCADT 333 (1449)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt 333 (1449)
.+++ .||+||+.|+....+.. ..+ ....++++++.+||. +..++
T Consensus 97 ~l~~-~tv~e~i~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~ 141 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNFKMN----------LDE------------------------VKNYAHRLLMDLGFSRDVMSQ 141 (286)
T ss_pred ccch-hhHHHHHHhhHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCChhhhhC
Confidence 3444 69999999875432110 000 011246688999996 56777
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.+.+ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++. |..+++.+++|+
T Consensus 142 ~~~~-----LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vt-H~~~~~~~~~dr 215 (286)
T PRK13646 142 SPFQ-----MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVS-HDMNEVARYADE 215 (286)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe-cCHHHHHHhCCE
Confidence 7655 9999999999999999999999999999999999999999999998765566766654 556788899999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000517 414 IILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~ 432 (1449)
|++|++|++++.|+++++.
T Consensus 216 i~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 216 VIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=319.72 Aligned_cols=198 Identities=25% Similarity=0.347 Sum_probs=168.0
Q ss_pred eeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-ccccceEEEEccCCCCCCCCCHHHH
Q 000517 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFARVSGYCEQTDIHSPNITVEES 954 (1449)
Q Consensus 876 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~e~ 954 (1449)
+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 45799999999999999999999999999999998765 48999999987532 2345679999999999999999999
Q ss_pred HHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000517 955 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034 (1449)
Q Consensus 955 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~ 1034 (1449)
+.+...... . .....++.++++++.++|.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLPE-----QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 987532211 1 112234567889999999887777653 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecC
Q 000517 1035 AAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085 (1449)
Q Consensus 1035 ~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~ 1085 (1449)
++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|. +|+++..|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEE-CCeEEEecC
Confidence 999999999998764 899999999976 4667899999997 589998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=324.42 Aligned_cols=206 Identities=25% Similarity=0.377 Sum_probs=170.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC--CceEEEEcCCCccCCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP--PKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~lT 261 (1449)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 35899999999999999999999999999999999999997 9999999987754321 247999999988889999
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|+||+.+.....+.. ..+ ....++.+++.+||++..++.+++
T Consensus 91 ~~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~---- 132 (236)
T TIGR03864 91 VRQNLRYHAALHGLS----------RAE------------------------ARERIAALLARLGLAERADDKVRE---- 132 (236)
T ss_pred HHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhcCChhh----
Confidence 999998765432110 000 011245678899998888887765
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|+ .+++. .+|++++|++|+
T Consensus 133 -LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~-~~~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 133 -LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHL-VDEIE-ADDRLVVLHRGR 209 (236)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC-hhhHh-hCCEEEEEeCCe
Confidence 999999999999999999999999999999999999999999999875456777776554 45564 599999999999
Q ss_pred EEEecChhhHHH
Q 000517 422 IVYHGPQDHVLA 433 (1449)
Q Consensus 422 iv~~G~~~~~~~ 433 (1449)
+++.|+.+++.+
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999999877753
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=321.01 Aligned_cols=196 Identities=25% Similarity=0.410 Sum_probs=165.9
Q ss_pred ccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-------ccccceEEEEccCCC
Q 000517 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-------ETFARVSGYCEQTDI 944 (1449)
Q Consensus 872 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~~gyv~Q~d~ 944 (1449)
+++.+ |+|+++++ |+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.
T Consensus 11 ~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 85 (214)
T cd03297 11 PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85 (214)
T ss_pred CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCc
Confidence 34445 99999999 99999999999999999999998654 58999999976431 124567999999999
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000517 945 HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 1024 (1449)
Q Consensus 945 ~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illL 1024 (1449)
+++.+|++||+.+..... .....++.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|
T Consensus 86 ~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llll 155 (214)
T cd03297 86 LFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLL 155 (214)
T ss_pred cCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888999999998764321 12334466889999999987767664 37999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 214 (214)
T cd03297 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVME-DGRLQYIG 214 (214)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 9999999999999999999999765 899999999986 4667899999998 58988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=328.78 Aligned_cols=215 Identities=22% Similarity=0.312 Sum_probs=173.5
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCC---CCCeeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRK---TSGYVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~---~~~~~~G~I~i~G 924 (1449)
.++++|+++.+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|.. .+.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWY-------------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEE-------------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 35566766543 2346999999999999999999999999999999999952 2212479999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccc----ccccccC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI----KDSLVGI 995 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 995 (1449)
.+... ...++.++|++|++.+++ .|+.||+.+....+.. ...+...+.++++++.++|.+. .+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 143 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKES--- 143 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhCC---
Confidence 87532 234567999999988876 6999999886543311 1123344567899999998642 3333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14245 144 --AFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFY 219 (250)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 34799999999999999999999999999999999999999999999985 5899999999986 5778899999997
Q ss_pred cCcEEEEecCC
Q 000517 1076 TGGRIIYCGPL 1086 (1449)
Q Consensus 1076 ~gG~~v~~G~~ 1086 (1449)
+|++++.|+.
T Consensus 220 -~G~~~~~~~~ 229 (250)
T PRK14245 220 -MGEMVEYDDT 229 (250)
T ss_pred -CCEEEEECCH
Confidence 5899999986
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=295.26 Aligned_cols=206 Identities=25% Similarity=0.457 Sum_probs=180.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCCccCCCCCHH
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVR 263 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1449)
..+|+|+|+.|.+||.++++||||||||||||+++|..+|. .|+|.+||++++. |...-|.|+|++.++|.+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~g--PgaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEG--PGAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccC--CCccceeEeccCccchhhHHH
Confidence 46999999999999999999999999999999999999998 9999999998764 344569999999999999999
Q ss_pred HHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccC
Q 000517 264 ETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343 (1449)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGl 343 (1449)
+|++|+.+++|.++.. |+ ..+.+.+...||++..+..+=. |
T Consensus 93 dNvafgL~l~Gi~k~~-------R~---------------------------~~a~q~l~~VgL~~~~~~~i~q-----L 133 (259)
T COG4525 93 DNVAFGLQLRGIEKAQ-------RR---------------------------EIAHQMLALVGLEGAEHKYIWQ-----L 133 (259)
T ss_pred HHHHHHHHhcCCCHHH-------HH---------------------------HHHHHHHHHhCcccccccceEe-----e
Confidence 9999999998875321 11 2346688999999888887765 9
Q ss_pred ChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeC--Ce
Q 000517 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE--GK 421 (1449)
Q Consensus 344 SGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~--G~ 421 (1449)
||||||||.|||||..+|+.|+||||..+||.-++.++.+.|-++.+..++.+++ ++|..+|..-+++++++|+. |+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~ll-iTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL-ITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEE-EeccHHHHHhhhheeEEecCCCce
Confidence 9999999999999999999999999999999999999999999988887777665 56788999999999999984 79
Q ss_pred EEEecChhhHHHH
Q 000517 422 IVYHGPQDHVLAF 434 (1449)
Q Consensus 422 iv~~G~~~~~~~~ 434 (1449)
|+..-+.+-...|
T Consensus 213 vv~~~~~df~rR~ 225 (259)
T COG4525 213 VVERLPLDFARRY 225 (259)
T ss_pred eeEecCCCHHHHh
Confidence 9988777654444
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=331.63 Aligned_cols=204 Identities=26% Similarity=0.370 Sum_probs=171.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCC-ccCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQND-LHIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 260 (1449)
++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++ ..++.+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc
Confidence 5899999999999999999999999999999999999997 9999999998764322 45799999986 367788
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
||+||+.++....+.. .++ ....++++++.+||.+..++.+++
T Consensus 98 tv~enl~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~--- 140 (279)
T PRK13635 98 TVQDDVAFGLENIGVP----------REE------------------------MVERVDQALRQVGMEDFLNREPHR--- 140 (279)
T ss_pred cHHHHHhhhHhhCCCC----------HHH------------------------HHHHHHHHHHHcCChhhhhCCccc---
Confidence 9999998865432210 000 011356788999999888888765
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.|++ +++. .+|+|++|++|
T Consensus 141 --LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~-~~~~-~~d~i~~l~~G 216 (279)
T PRK13635 141 --LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL-DEAA-QADRVIVMNKG 216 (279)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH-HHHH-cCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999765567777776654 4565 59999999999
Q ss_pred eEEEecChhhHH
Q 000517 421 KIVYHGPQDHVL 432 (1449)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1449)
++++.|+.+++.
T Consensus 217 ~i~~~g~~~~~~ 228 (279)
T PRK13635 217 EILEEGTPEEIF 228 (279)
T ss_pred EEEEECCHHHHh
Confidence 999999988775
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=324.19 Aligned_cols=203 Identities=30% Similarity=0.467 Sum_probs=170.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC--CCceEEEEcCCCccCCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV--PPKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1449)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 45999999999999999999999999999999999999987 999999998875321 2456999999998888999
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|+||+.+.....+... .+ ....++++++.+||++..++.+++
T Consensus 92 v~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~---- 133 (220)
T cd03263 92 VREHLRFYARLKGLPK----------SE------------------------IKEEVELLLRVLGLTDKANKRART---- 133 (220)
T ss_pred HHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCHHHHhChhhh----
Confidence 9999988655432110 00 001245678899998888887765
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++. |..+++.+++|++++|++|+
T Consensus 134 -LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~s-H~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 134 -LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTT-HSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEc-CCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999864 46666654 55567888999999999999
Q ss_pred EEEecChhhH
Q 000517 422 IVYHGPQDHV 431 (1449)
Q Consensus 422 iv~~G~~~~~ 431 (1449)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999987764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=330.43 Aligned_cols=216 Identities=24% Similarity=0.323 Sum_probs=178.9
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|+++.+.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 4677777765421 113589999999999999999999999999999999998664 589999999875
Q ss_pred cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000517 928 VQ---ETFARVSGYCEQTDI-HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLST 1003 (1449)
Q Consensus 928 ~~---~~~~~~~gyv~Q~d~-~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1003 (1449)
.. ...++.++|++|++. +++..|+.+|+.+..... ....+...+.++++++.+++.+..+..+ ..|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 32 245667999999974 677889999998864322 1233444567889999999988777664 47999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEE
Q 000517 1004 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIY 1082 (1449)
Q Consensus 1004 GqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~ 1082 (1449)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++. .+|++++|. +|++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~-~G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMN-KGTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 354 499999997 589999
Q ss_pred ecCCC
Q 000517 1083 CGPLG 1087 (1449)
Q Consensus 1083 ~G~~~ 1087 (1449)
.|+.+
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 99864
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=328.06 Aligned_cols=215 Identities=24% Similarity=0.319 Sum_probs=175.6
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCC--CC-eeEEEEEEcCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT--SG-YVEGEIKISGY 925 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G~ 925 (1449)
+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|.
T Consensus 5 l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 71 (252)
T PRK14256 5 VKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDT 71 (252)
T ss_pred EEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCE
Confidence 56677765442 2459999999999999999999999999999999999754 21 24799999998
Q ss_pred cCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000517 926 PKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGIP 996 (1449)
Q Consensus 926 ~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 996 (1449)
++.. ..+++.++|++|+..+++.+|+.||+.+...... .......++.++++++.+++.+ ..+..
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 145 (252)
T PRK14256 72 DIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKSN---- 145 (252)
T ss_pred EcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCC----
Confidence 7532 2356779999999999999999999987643321 1122334456788999999864 22332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEec
Q 000517 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 997 ~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~ 1076 (1449)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.
T Consensus 146 -~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~- 221 (252)
T PRK14256 146 -AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY- 221 (252)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE-
Confidence 347999999999999999999999999999999999999999999999975 689999999986 5678899999997
Q ss_pred CcEEEEecCC
Q 000517 1077 GGRIIYCGPL 1086 (1449)
Q Consensus 1077 gG~~v~~G~~ 1086 (1449)
+|+++..|+.
T Consensus 222 ~G~i~~~~~~ 231 (252)
T PRK14256 222 MGDLVECGET 231 (252)
T ss_pred CCEEEEeCCH
Confidence 5899999986
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=324.75 Aligned_cols=204 Identities=22% Similarity=0.369 Sum_probs=170.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC-----CCceEEEEcCCCccCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV-----PPKTSAYISQNDLHIAE 259 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~~~~ 259 (1449)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH 91 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCCC
Confidence 5899999999999999999999999999999999999987 999999998875421 14579999999988999
Q ss_pred CCHHHHHHHHHHc-cCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 260 MTVRETVDFSARC-QGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 260 lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
+||+||+.++... .+.. ..+ ....++++++.+||++..|..+.+
T Consensus 92 ~tv~~~l~~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~- 136 (240)
T PRK09493 92 LTALENVMFGPLRVRGAS----------KEE------------------------AEKQARELLAKVGLAERAHHYPSE- 136 (240)
T ss_pred CcHHHHHHhHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCChHHHhcChhh-
Confidence 9999999886421 1100 000 011246688999998777777655
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|++. |..+++.+++|++++|+
T Consensus 137 ----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~s-H~~~~~~~~~d~i~~l~ 210 (240)
T PRK09493 137 ----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVT-HEIGFAEKVASRLIFID 210 (240)
T ss_pred ----cCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEe-CCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999865 467776665 45667888999999999
Q ss_pred CCeEEEecChhhHH
Q 000517 419 EGKIVYHGPQDHVL 432 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1449)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~g~~~~~~ 224 (240)
T PRK09493 211 KGRIAEDGDPQVLI 224 (240)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988764
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=344.18 Aligned_cols=194 Identities=26% Similarity=0.426 Sum_probs=169.4
Q ss_pred cceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-------ccccceEEEEccCCCCCCCCCH
Q 000517 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-------ETFARVSGYCEQTDIHSPNITV 951 (1449)
Q Consensus 879 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~~gyv~Q~d~~~~~lTv 951 (1449)
|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 99999999999999999999999999999998665 58999999987532 1345679999999999999999
Q ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000517 952 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031 (1449)
Q Consensus 952 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgL 1031 (1449)
+||+.|+.... .....++.++++++.++|.+..++.+. .||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPG-----RLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999865321 123345568899999999988887754 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1032 DARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1032 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|+.++..+++.|++++++ |+|||++||+++ ++...+|++++|. +|+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLE-DGRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEEECCH
Confidence 999999999999999765 899999999986 5778899999997 5899999986
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=323.99 Aligned_cols=201 Identities=27% Similarity=0.395 Sum_probs=173.1
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccc-cccceEEEEccCCCCCCCCCHH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQE-TFARVSGYCEQTDIHSPNITVE 952 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~-~~~~~~gyv~Q~d~~~~~lTv~ 952 (1449)
+.+|+|+|++++|||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|++..++.+|+.
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 4699999999999999999999999999999999998765 479999999875431 2346799999999988889999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000517 953 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032 (1449)
Q Consensus 953 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD 1032 (1449)
||+.+....+. .......+.++++++.+||.+..++.+ ..||+|||||++|||+|+.+|++++|||||+|||
T Consensus 91 ~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~gLD 162 (232)
T cd03300 91 ENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162 (232)
T ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99988654331 223344567889999999988777765 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1033 ARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1033 ~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|. +|++++.|+.
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~-~G~~~~~~~~ 215 (232)
T cd03300 163 LKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMN-KGKIQQIGTP 215 (232)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEecCCH
Confidence 99999999999999764 899999999985 4778899999998 5899998864
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=325.44 Aligned_cols=201 Identities=27% Similarity=0.427 Sum_probs=173.2
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccc-cccceEEEEccCCCCCCCCCHH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQE-TFARVSGYCEQTDIHSPNITVE 952 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~-~~~~~~gyv~Q~d~~~~~lTv~ 952 (1449)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|++.+++..|+.
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 4699999999999999999999999999999999998654 589999999875431 2346799999999988899999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000517 953 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032 (1449)
Q Consensus 953 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD 1032 (1449)
||+.+....+. .......+.++++++.+++.+..++.++ .||+|||||++||++|+.+|++++|||||+|||
T Consensus 91 enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrl~laral~~~p~llllDEP~~~LD 162 (237)
T TIGR00968 91 DNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYPN-----QLSGGQRQRVALARALAVEPQVLLLDEPFGALD 162 (237)
T ss_pred HHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99987654331 2223344667899999999877777654 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1033 ARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1033 ~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
+.+...+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|+.
T Consensus 163 ~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 215 (237)
T TIGR00968 163 AKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSP 215 (237)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCH
Confidence 99999999999998765 899999999986 5678899999997 5899999885
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=344.18 Aligned_cols=209 Identities=25% Similarity=0.431 Sum_probs=175.9
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
+++|+|+++++. +++++|+++||+|++||.+||+|+|||||||++++|.+... .+|+|.|||+++
T Consensus 351 ~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~di 415 (591)
T KOG0057|consen 351 SIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQDI 415 (591)
T ss_pred cEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCeeH
Confidence 589999998764 23459999999999999999999999999999999998654 489999999986
Q ss_pred c---cccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCC-------cccccccccCCC
Q 000517 928 V---QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL-------DAIKDSLVGIPG 997 (1449)
Q Consensus 928 ~---~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L-------~~~~~~~vg~~~ 997 (1449)
. .+.+|+.+|||||+..+| +-||.+|+.|+ +++.+. +.|-++.+..++ .+-.+|.||..|
T Consensus 416 k~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YG-----n~sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG 485 (591)
T KOG0057|consen 416 KEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYG-----NPSASD----EEVVEACKRAGLHDVISRLPDGYQTLVGERG 485 (591)
T ss_pred hhhChHHhhhheeEeCCccccc-chhHHHHhhcC-----CCCcCH----HHHHHHHHHcCcHHHHHhccccchhhHhhcc
Confidence 4 357889999999988776 56999999885 233333 334445555554 344677888876
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
. .|||||||||+||||++.+|+|+++|||||.||..+...+++.+.+. ..|+|+|++.|+. +....||++++|+ +
T Consensus 486 ~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~-n 560 (591)
T KOG0057|consen 486 L-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLD-N 560 (591)
T ss_pred c-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEE-C
Confidence 5 59999999999999999999999999999999999999999999984 4699999999986 4788999999998 5
Q ss_pred cEEEEecCC
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~v~~G~~ 1086 (1449)
|++...|+-
T Consensus 561 G~v~e~gth 569 (591)
T KOG0057|consen 561 GTVKEYGTH 569 (591)
T ss_pred CeeEEeccH
Confidence 899999985
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=338.26 Aligned_cols=225 Identities=23% Similarity=0.279 Sum_probs=181.7
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
++.+|+++++....... ...+...+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 6 l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l~ 80 (327)
T PRK11308 6 LQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDLL 80 (327)
T ss_pred EEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEcC
Confidence 66777776553211000 001235699999999999999999999999999999999998654 5899999998753
Q ss_pred c------ccccceEEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-cccccccCCCCC
Q 000517 929 Q------ETFARVSGYCEQTD--IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-IKDSLVGIPGVN 999 (1449)
Q Consensus 929 ~------~~~~~~~gyv~Q~d--~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~ 999 (1449)
. ..+++.++||+|++ .+.|.+|+.+++....... ......+..+.+.++++.+||.+ ..++.+ .
T Consensus 81 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p-----~ 153 (327)
T PRK11308 81 KADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRYP-----H 153 (327)
T ss_pred cCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCCC-----c
Confidence 2 13466799999997 5788999999997754432 12334455678899999999963 556553 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCc
Q 000517 1000 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGG 1078 (1449)
Q Consensus 1000 ~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG 1078 (1449)
.||||||||++|||||+.+|++|++||||+|||..++..|++.|+++.++ |.|||++||+++ .+.+.+|++++|. +|
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~-~G 231 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMY-LG 231 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999764 999999999976 4667899999998 58
Q ss_pred EEEEecCCC
Q 000517 1079 RIIYCGPLG 1087 (1449)
Q Consensus 1079 ~~v~~G~~~ 1087 (1449)
++++.|+..
T Consensus 232 ~ive~g~~~ 240 (327)
T PRK11308 232 RCVEKGTKE 240 (327)
T ss_pred EEEEECCHH
Confidence 999999864
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=332.28 Aligned_cols=219 Identities=23% Similarity=0.310 Sum_probs=179.2
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|+++.++... ....+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i~ 75 (280)
T PRK13633 5 IKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDTS 75 (280)
T ss_pred EEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecc
Confidence 66777777653110 00124699999999999999999999999999999999998664 5899999998764
Q ss_pred c----ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000517 929 Q----ETFARVSGYCEQTDI-HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLST 1003 (1449)
Q Consensus 929 ~----~~~~~~~gyv~Q~d~-~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1003 (1449)
. ...++.+||++|++. .+...||.|++.|..... .....+.++.++++++.+||.+..++.++ .|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~ 147 (280)
T PRK13633 76 DEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPH-----LLSG 147 (280)
T ss_pred ccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCH
Confidence 2 234678999999974 233569999998875432 22334455678999999999988887754 7999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEE
Q 000517 1004 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIY 1082 (1449)
Q Consensus 1004 GqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~ 1082 (1449)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++. +. .+|++++|+ +|++++
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~-~G~i~~ 224 (280)
T PRK13633 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMD-SGKVVM 224 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999764 9999999999873 44 499999997 589999
Q ss_pred ecCCC
Q 000517 1083 CGPLG 1087 (1449)
Q Consensus 1083 ~G~~~ 1087 (1449)
.|+..
T Consensus 225 ~g~~~ 229 (280)
T PRK13633 225 EGTPK 229 (280)
T ss_pred ecCHH
Confidence 99863
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=330.66 Aligned_cols=216 Identities=24% Similarity=0.311 Sum_probs=175.8
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 924 (1449)
.+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 577888876542 245999999999999999999999999999999999976431 2589999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGI 995 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 995 (1449)
.+... ..+++.++|++|++.+++. ||.||+.+....+.. ........+.++++++.++|.+ ..+..
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87532 2345679999999888774 999999987543321 1122334566889999999964 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ .+...+|++++|.
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999865 789999999986 4667899999997
Q ss_pred cCcEEEEecCC
Q 000517 1076 TGGRIIYCGPL 1086 (1449)
Q Consensus 1076 ~gG~~v~~G~~ 1086 (1449)
+|+++..|+.
T Consensus 237 -~G~i~~~g~~ 246 (267)
T PRK14235 237 -LGNLVEVGDT 246 (267)
T ss_pred -CCEEEEeCCH
Confidence 5899999875
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=332.29 Aligned_cols=217 Identities=24% Similarity=0.335 Sum_probs=179.2
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCe-eEEEEEEcCcc
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY-VEGEIKISGYP 926 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~-~~G~I~i~G~~ 926 (1449)
.++++|+++.++. ..+.+|+|||++|++||++||+||||||||||+++|+|...+.. .+|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4667777765421 12359999999999999999999999999999999999865421 13999999987
Q ss_pred Ccc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000517 927 KVQ---ETFARVSGYCEQTDI-HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLS 1002 (1449)
Q Consensus 927 ~~~---~~~~~~~gyv~Q~d~-~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 1002 (1449)
... ...++.+||++|++. .++..||+||+.|....+ ....++.++.++++++.++|.+..++.+ +.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 642 234567999999974 567899999998764322 2334455567899999999988777765 4799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEE
Q 000517 1003 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081 (1449)
Q Consensus 1003 gGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v 1081 (1449)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..+|++++|. +|+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~-~G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLD-DGKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999764 8999999999863 4 5799999997 58999
Q ss_pred EecCC
Q 000517 1082 YCGPL 1086 (1449)
Q Consensus 1082 ~~G~~ 1086 (1449)
+.|++
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 99986
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=334.63 Aligned_cols=204 Identities=23% Similarity=0.364 Sum_probs=168.7
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCC-----------------------
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF----------------------- 241 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~----------------------- 241 (1449)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.+....
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKI 97 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceeccccccccccccccccccccccccccc
Confidence 5899999999999999999999999999999999999997 89999998754210
Q ss_pred ----CCCceEEEEcCCC-ccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhh
Q 000517 242 ----VPPKTSAYISQND-LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTL 316 (1449)
Q Consensus 242 ----~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~ 316 (1449)
..++.++||+|++ ..+...||+||+.|+....+... .+ ...
T Consensus 98 ~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------~~------------------------~~~ 143 (305)
T PRK13651 98 KKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------EE------------------------AKK 143 (305)
T ss_pred chHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------HH------------------------HHH
Confidence 1145689999985 34556899999998765332110 00 011
Q ss_pred hHHHHHHHhCCC-ccccccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcE
Q 000517 317 QTDYILKILGLD-VCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDST 395 (1449)
Q Consensus 317 ~~~~il~~lgL~-~~~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t 395 (1449)
.++.+++.+||+ +..++.+.+ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|
T Consensus 144 ~~~~~l~~~gL~~~~~~~~~~~-----LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~t 217 (305)
T PRK13651 144 RAAKYIELVGLDESYLQRSPFE-----LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKT 217 (305)
T ss_pred HHHHHHHHcCCChhhhhCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCE
Confidence 356688999996 567777765 999999999999999999999999999999999999999999999874 4667
Q ss_pred EEEEEecCchhHHhhcCeEEEEeCCeEEEecChhhHH
Q 000517 396 ALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 396 ~vi~~~q~~~~~~~~fD~v~lL~~G~iv~~G~~~~~~ 432 (1449)
+|++ +|..+++.+.+|+|++|++|++++.|+++++.
T Consensus 218 iiiv-tHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 218 IILV-THDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EEEE-eeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 6665 56677888999999999999999999998874
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=331.75 Aligned_cols=208 Identities=25% Similarity=0.388 Sum_probs=170.9
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC------eeEEEEEEcCccCcc---ccccceEEEEccCC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG------YVEGEIKISGYPKVQ---ETFARVSGYCEQTD 943 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~------~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d 943 (1449)
++.+|+|+|++|++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+... ..+++.++|++|++
T Consensus 13 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 346999999999999999999999999999999999976542 127999999987532 23456689999998
Q ss_pred CCCCCCCHHHHHHHHHHhccC-CCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh------
Q 000517 944 IHSPNITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELV------ 1016 (1449)
Q Consensus 944 ~~~~~lTv~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~------ 1016 (1449)
..++.+|++||+.+....... .........+.++++++.++|.+..++.+ ..||||||||++||++|+
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~~~~~ 167 (272)
T PRK13547 93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV-----TTLSGGELARVQFARVLAQLWPPH 167 (272)
T ss_pred CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcccccc
Confidence 766679999999875321110 01111234466889999999987777654 379999999999999999
Q ss_pred ---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1017 ---ANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1017 ---~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
.+|++|+|||||+|||+.+...+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +|++++.|+.+
T Consensus 168 ~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 240 (272)
T PRK13547 168 DAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLA-DGAIVAHGAPA 240 (272)
T ss_pred ccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCeEEEecCHH
Confidence 599999999999999999999999999999765 899999999986 5677899999998 58999999864
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=335.97 Aligned_cols=225 Identities=21% Similarity=0.326 Sum_probs=180.1
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC-eeEEEEEEcCcc
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG-YVEGEIKISGYP 926 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~-~~~G~I~i~G~~ 926 (1449)
.+.++|++.++... .+...+|+||||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 35677776554321 12346999999999999999999999999999999999986542 138999999987
Q ss_pred Ccc---cc---cc-ceEEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCC
Q 000517 927 KVQ---ET---FA-RVSGYCEQTD--IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPG 997 (1449)
Q Consensus 927 ~~~---~~---~~-~~~gyv~Q~d--~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 997 (1449)
+.. .. ++ +.++||+|++ .+.|.+|+.+++.+...... ....++..+++.++++.++|.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 532 11 22 4799999998 67899999999987654322 233445567788999999997533221 1 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEec
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~ 1076 (1449)
+.+||||||||++||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|++|||++ .+.+.+|++++|.
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~- 236 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY- 236 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE-
Confidence 4589999999999999999999999999999999999999999999999765 899999999986 4667899999997
Q ss_pred CcEEEEecCCC
Q 000517 1077 GGRIIYCGPLG 1087 (1449)
Q Consensus 1077 gG~~v~~G~~~ 1087 (1449)
+|++++.|+..
T Consensus 237 ~G~ive~g~~~ 247 (330)
T PRK09473 237 AGRTMEYGNAR 247 (330)
T ss_pred CCEEEEECCHH
Confidence 58999999863
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=324.96 Aligned_cols=203 Identities=25% Similarity=0.382 Sum_probs=166.2
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCC-----CCCCCeeeEEEECCccCCCCC-----CCceEEEEcCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNL-----DPSLKVTGEVSYNGYKLEEFV-----PPKTSAYISQND 254 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l-----~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d 254 (1449)
++|+|+|+++++|++++|+||||||||||+++|+|.+ +|+ +|+|.++|+++.... .++.++|++|++
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 5899999999999999999999999999999999999 776 999999998875432 245799999998
Q ss_pred ccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccc
Q 000517 255 LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTM 334 (1449)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 334 (1449)
.++ .+||+||+.++....+.... .+ .+..++.+++.+||.+..+..
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~~~~~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHGIKLK---------EE------------------------LDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred hhc-cccHHHHHHhHHHhcCCCcH---------HH------------------------HHHHHHHHHHHcCCChHHhcc
Confidence 877 89999999987543221000 00 011245678999998766665
Q ss_pred ccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeE
Q 000517 335 VGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDI 414 (1449)
Q Consensus 335 vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v 414 (1449)
+. .+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. .|+|++ +|..+++.++||++
T Consensus 137 ~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~-sH~~~~~~~~~d~i 210 (227)
T cd03260 137 LH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIV-THNMQQAARVADRT 210 (227)
T ss_pred CC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEE-eccHHHHHHhCCEE
Confidence 30 1349999999999999999999999999999999999999999999998653 566655 45567888999999
Q ss_pred EEEeCCeEEEecChhh
Q 000517 415 ILMAEGKIVYHGPQDH 430 (1449)
Q Consensus 415 ~lL~~G~iv~~G~~~~ 430 (1449)
++|++|++++.|++++
T Consensus 211 ~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 211 AFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEeCCEEEEecCccc
Confidence 9999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=325.13 Aligned_cols=197 Identities=23% Similarity=0.337 Sum_probs=168.0
Q ss_pred cceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccc-cccceEEEEccCCCCCCCCCHHHHHHH
Q 000517 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQE-TFARVSGYCEQTDIHSPNITVEESVIF 957 (1449)
Q Consensus 879 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~-~~~~~~gyv~Q~d~~~~~lTv~e~l~f 957 (1449)
|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.... ..++.++|++|++.+++.+|+.||+.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhc
Confidence 89999999999999999999999999999998654 589999999875321 224579999999999999999999987
Q ss_pred HHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000517 958 SAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 1037 (1449)
Q Consensus 958 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~ 1037 (1449)
..... .. ..+..++.++++++.+||.+..++.+. .||||||||++||++++.+|++++|||||+|||+.++.
T Consensus 95 ~~~~~--~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~ 166 (232)
T PRK10771 95 GLNPG--LK-LNAAQREKLHAIARQMGIEDLLARLPG-----QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQ 166 (232)
T ss_pred ccccc--cC-CCHHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 53211 11 122345668999999999888887754 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1038 IVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1038 ~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
.+.+.|++++++ |+|||+++|++. ++.+.+|++++|. +|++++.|+.+
T Consensus 167 ~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~g~~~ 215 (232)
T PRK10771 167 EMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVA-DGRIAWDGPTD 215 (232)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 999999998764 899999999986 5677899999998 58999999863
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=334.89 Aligned_cols=216 Identities=20% Similarity=0.370 Sum_probs=172.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCC-------------------CCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF-------------------VPP 244 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-------------------~~~ 244 (1449)
.++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|+++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 35999999999999999999999999999999999999997 99999999876532 114
Q ss_pred ceEEEEcCCC--ccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHH
Q 000517 245 KTSAYISQND--LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYIL 322 (1449)
Q Consensus 245 ~~~~yv~Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il 322 (1449)
+.++||+|++ .++ ..||+||+.|+....+.. ..+ ....++.++
T Consensus 116 ~~ig~v~Q~~~~~l~-~~tv~eni~~~~~~~~~~----------~~~------------------------~~~~~~~~l 160 (320)
T PRK13631 116 RRVSMVFQFPEYQLF-KDTIEKDIMFGPVALGVK----------KSE------------------------AKKLAKFYL 160 (320)
T ss_pred hcEEEEEECchhccc-cchHHHHHHhhHHhcCCC----------HHH------------------------HHHHHHHHH
Confidence 5799999986 345 469999998875322110 000 011345678
Q ss_pred HHhCCC-ccccccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEe
Q 000517 323 KILGLD-VCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLL 401 (1449)
Q Consensus 323 ~~lgL~-~~~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~ 401 (1449)
+.+||+ ...++.+.+ |||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.. .+.|+|++.
T Consensus 161 ~~~gL~~~~~~~~~~~-----LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~Tiiivt- 233 (320)
T PRK13631 161 NKMGLDDSYLERSPFG-----LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVIT- 233 (320)
T ss_pred HHcCCChhHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEe-
Confidence 999996 456666554 999999999999999999999999999999999999999999999865 467766654
Q ss_pred cCchhHHhhcCeEEEEeCCeEEEecChhhHHH---HHHhcCCCCCC
Q 000517 402 QPAPETFDLFDDIILMAEGKIVYHGPQDHVLA---FFEDCGFRCPE 444 (1449)
Q Consensus 402 q~~~~~~~~fD~v~lL~~G~iv~~G~~~~~~~---~F~~~Gf~~p~ 444 (1449)
|..+++.+.+|+|++|++|+++..|+++++.. .++..|..+|.
T Consensus 234 Hd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 234 HTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred cCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 55667889999999999999999999987742 34445555443
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=329.68 Aligned_cols=214 Identities=21% Similarity=0.276 Sum_probs=173.8
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 924 (1449)
.+.++|++++++ .+.+|+|+||+|++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 13 ~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g 79 (269)
T PRK14259 13 IISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG 79 (269)
T ss_pred eEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 477888876542 246999999999999999999999999999999999975421 3589999999
Q ss_pred ccCc-----cccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccC
Q 000517 925 YPKV-----QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGI 995 (1449)
Q Consensus 925 ~~~~-----~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 995 (1449)
.+.. ...+++.++|++|++.+++ .||+||+.+....+. .. ...++.++++++.+++.. ..+..
T Consensus 80 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 151 (269)
T PRK14259 80 TDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNES--- 151 (269)
T ss_pred EEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCC---
Confidence 8652 1234567999999998887 499999988754331 11 223456778888888742 33433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...+|++++|.
T Consensus 152 --~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 227 (269)
T PRK14259 152 --GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFN 227 (269)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEe
Confidence 347999999999999999999999999999999999999999999999854 799999999986 5778999999998
Q ss_pred c----------CcEEEEecCC
Q 000517 1076 T----------GGRIIYCGPL 1086 (1449)
Q Consensus 1076 ~----------gG~~v~~G~~ 1086 (1449)
+ .|++++.|++
T Consensus 228 ~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 228 AEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred ccccccccccccceEEEeCCH
Confidence 5 3678999986
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=324.19 Aligned_cols=201 Identities=24% Similarity=0.326 Sum_probs=166.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCC--CCCceEEEEc-CCCccCCC
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF--VPPKTSAYIS-QNDLHIAE 259 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~-Q~d~~~~~ 259 (1449)
.+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|++.... ..++.++|++ |++.+++.
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 356999999999999999999999999999999999999997 99999999875332 1245789997 55677889
Q ss_pred CCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccc
Q 000517 260 MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAM 339 (1449)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 339 (1449)
+||+||+.+.....+... .+ ....++.+++.+||++..|+.+++
T Consensus 110 ~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~-- 153 (236)
T cd03267 110 LPVIDSFYLLAAIYDLPP----------AR------------------------FKKRLDELSELLDLEELLDTPVRQ-- 153 (236)
T ss_pred CcHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCChhHhcCChhh--
Confidence 999999988654332110 00 011245678889999888888776
Q ss_pred cccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeC
Q 000517 340 RRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419 (1449)
Q Consensus 340 ~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~ 419 (1449)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.| ..+++.+++|++++|.+
T Consensus 154 ---LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH-~~~~~~~~~d~i~~l~~ 229 (236)
T cd03267 154 ---LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH-YMKDIEALARRVLVIDK 229 (236)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEec-CHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999987655677777654 45678899999999999
Q ss_pred CeEEEec
Q 000517 420 GKIVYHG 426 (1449)
Q Consensus 420 G~iv~~G 426 (1449)
|++++.|
T Consensus 230 G~i~~~g 236 (236)
T cd03267 230 GRLLYDG 236 (236)
T ss_pred CEEEecC
Confidence 9998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=327.41 Aligned_cols=221 Identities=22% Similarity=0.255 Sum_probs=177.9
Q ss_pred CcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCC---CeeEEEEEE
Q 000517 846 PLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTS---GYVEGEIKI 922 (1449)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~I~i 922 (1449)
...+.++|++++++ .+.+|+|+|+++++||++||+|+||||||||+++|+|...+ .+.+|+|.+
T Consensus 18 ~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (267)
T PRK14237 18 EIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY 84 (267)
T ss_pred CeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEE
Confidence 34578888877542 24699999999999999999999999999999999997643 135899999
Q ss_pred cCccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCC
Q 000517 923 SGYPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPG 997 (1449)
Q Consensus 923 ~G~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 997 (1449)
+|.+... ...++.++|++|++.+++ .||+||+.+..... .....+..++.+.++++.++|.+..+...+. .
T Consensus 85 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~-~ 160 (267)
T PRK14237 85 RGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLHK-S 160 (267)
T ss_pred CCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhcC-C
Confidence 9987532 134667999999988877 69999998864322 1112334456788899999985322122221 2
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++. ++.|||++||+++ ++.+.+|++++|. +
T Consensus 161 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~-~ 237 (267)
T PRK14237 161 ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFY-L 237 (267)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEE-C
Confidence 35799999999999999999999999999999999999999999999985 4799999999986 5778899999997 5
Q ss_pred cEEEEecCC
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~v~~G~~ 1086 (1449)
|++++.|+.
T Consensus 238 G~i~~~g~~ 246 (267)
T PRK14237 238 GDLIEYDKT 246 (267)
T ss_pred CEEEEeCCH
Confidence 899999986
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=334.61 Aligned_cols=219 Identities=19% Similarity=0.313 Sum_probs=175.9
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|++++++... .....+|+|+|++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEc
Confidence 367778776653110 0013499999999999999999999999999999999998654 589999999864
Q ss_pred c--------cccccceEEEEccCCCC-CCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000517 928 V--------QETFARVSGYCEQTDIH-SPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-AIKDSLVGIPG 997 (1449)
Q Consensus 928 ~--------~~~~~~~~gyv~Q~d~~-~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 997 (1449)
. ...+++.++|++|++.. ....|++||+.|..... ....+...+.++++++.++|. +..++.+
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~---- 148 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP---- 148 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh----
Confidence 2 12345679999999732 23469999998864322 122334446678899999994 5666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEec
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~ 1076 (1449)
..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.+|++++|+
T Consensus 149 -~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~- 225 (289)
T PRK13645 149 -FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMH- 225 (289)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-
Confidence 379999999999999999999999999999999999999999999998764 899999999986 5778899999998
Q ss_pred CcEEEEecCC
Q 000517 1077 GGRIIYCGPL 1086 (1449)
Q Consensus 1077 gG~~v~~G~~ 1086 (1449)
+|++++.|+.
T Consensus 226 ~G~i~~~g~~ 235 (289)
T PRK13645 226 EGKVISIGSP 235 (289)
T ss_pred CCEEEEeCCH
Confidence 5899998875
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=342.20 Aligned_cols=191 Identities=24% Similarity=0.417 Sum_probs=168.0
Q ss_pred cceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-------ccccceEEEEccCCCCCCCCCH
Q 000517 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-------ETFARVSGYCEQTDIHSPNITV 951 (1449)
Q Consensus 879 ~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~~gyv~Q~d~~~~~lTv 951 (1449)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.+||++|+..+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999998665 58999999987532 1245679999999999999999
Q ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000517 952 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031 (1449)
Q Consensus 952 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgL 1031 (1449)
+||+.|+.. ....+.++++++.+||.+..++.++ .||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYPG-----SLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 1123568899999999888877754 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1032 DARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1032 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
|+.++..+++.|++++++ |+|+|++||+++ ++...+|++++|. +|+++..|++.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 214 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLE-QGKVKAFGPLE 214 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEe-CCEEEEecCHH
Confidence 999999999999999765 899999999986 6788899999998 58999999864
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=358.28 Aligned_cols=123 Identities=26% Similarity=0.371 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CEEE
Q 000517 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-IKDSLVGIPGVNGLSTEQRKRLTIAVELVANP---SIIF 1023 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p---~ill 1023 (1449)
++||.|++.|...+. . .....+.++.+||.. ..+..+ ..||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 378999988865432 1 122457899999976 345554 379999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 000517 1024 MDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK-----TGGRIIYCGPL 1086 (1449)
Q Consensus 1024 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~-----~gG~~v~~G~~ 1086 (1449)
|||||+|||+.+...+++.|+++.+.|.|||+++|++. ....+|+++.|. ++|++++.|++
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999975 346899999994 47999999986
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=372.68 Aligned_cols=219 Identities=28% Similarity=0.437 Sum_probs=182.0
Q ss_pred ccCCCcEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEE
Q 000517 842 LPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIK 921 (1449)
Q Consensus 842 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~ 921 (1449)
+......++|+|++|+++..+ +..+|+|+|+.|++|+.+||+|||||||||++++|.+...| .+|+|.
T Consensus 344 ~~~~~g~ief~nV~FsYPsRp----------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP--~~G~V~ 411 (1228)
T KOG0055|consen 344 LSSIKGEIEFRNVCFSYPSRP----------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP--TSGEVL 411 (1228)
T ss_pred ccccccceEEEEEEecCCCCC----------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC--CCceEE
Confidence 333455799999999988654 34699999999999999999999999999999999997665 689999
Q ss_pred EcCccCcc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHH-------cCCcccccc
Q 000517 922 ISGYPKVQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET-------IELDAIKDS 991 (1449)
Q Consensus 922 i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~-------l~L~~~~~~ 991 (1449)
+||.++.. +.+|.++|.|.|+|.+| +.|++||+.|+ .++.+.++ ++++.+. ..|.+-.++
T Consensus 412 idG~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G-----~~dat~~~----i~~a~k~ana~~fi~~lp~g~~T 481 (1228)
T KOG0055|consen 412 IDGEDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYG-----KPDATREE----IEEAAKAANAHDFILKLPDGYDT 481 (1228)
T ss_pred EcCccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcC-----CCcccHHH----HHHHHHHccHHHHHHhhHHhhcc
Confidence 99988643 56788999999999775 58999999885 22222222 2233222 245566789
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeE
Q 000517 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDEL 1071 (1449)
Q Consensus 992 ~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~ 1071 (1449)
.+|..|+ +||||||||++|||||+++|+||+||||||+||+.+.+.|+++|++.. .|+|.|+++|+.| ..+.+|++
T Consensus 482 ~vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS--tIrnaD~I 557 (1228)
T KOG0055|consen 482 LVGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS--TIRNADKI 557 (1228)
T ss_pred cccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh--hhhccCEE
Confidence 9998877 499999999999999999999999999999999999999999999864 6999999999986 34569999
Q ss_pred EEEecCcEEEEecCCC
Q 000517 1072 ILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1072 ~~l~~gG~~v~~G~~~ 1087 (1449)
+++. +|++++.|..+
T Consensus 558 ~v~~-~G~IvE~G~h~ 572 (1228)
T KOG0055|consen 558 AVME-EGKIVEQGTHD 572 (1228)
T ss_pred EEEE-CCEEEEecCHH
Confidence 9998 58999999863
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=336.21 Aligned_cols=223 Identities=17% Similarity=0.235 Sum_probs=176.3
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCC--CeeEEEEEEcCcc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTS--GYVEGEIKISGYP 926 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~--~~~~G~I~i~G~~ 926 (1449)
+.++|++.+++.. .+...+|+||||+|++||++||+|+||||||||+++|+|...+ ...+|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 5667776554321 1235699999999999999999999999999999999997642 1357999999987
Q ss_pred Ccc---cc----ccceEEEEccCCC--CCCCCCHHHHHHHHHHhccCCC---CChHHHHHHHHHHHHHcCCccc---ccc
Q 000517 927 KVQ---ET----FARVSGYCEQTDI--HSPNITVEESVIFSAWLRLAPE---INSKTKAEFVNEVLETIELDAI---KDS 991 (1449)
Q Consensus 927 ~~~---~~----~~~~~gyv~Q~d~--~~~~lTv~e~l~f~~~lr~~~~---~~~~~~~~~v~~~l~~l~L~~~---~~~ 991 (1449)
+.. .. .++.++||+|++. +.|.+||.+++.+......... ....+.++.+.++++.+||.+. .+.
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 532 11 2347999999975 5788999999976422111000 1112345678899999999753 344
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCe
Q 000517 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDE 1070 (1449)
Q Consensus 992 ~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~ 1070 (1449)
. +.+|||||||||+||+||+.+|+||+|||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|+
T Consensus 155 ~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dr 228 (330)
T PRK15093 155 F-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADK 228 (330)
T ss_pred C-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 3 3479999999999999999999999999999999999999999999999864 999999999986 46788999
Q ss_pred EEEEecCcEEEEecCCC
Q 000517 1071 LILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1071 ~~~l~~gG~~v~~G~~~ 1087 (1449)
+++|. +|++++.|+.+
T Consensus 229 i~vm~-~G~ive~g~~~ 244 (330)
T PRK15093 229 INVLY-CGQTVETAPSK 244 (330)
T ss_pred EEEEE-CCEEEEECCHH
Confidence 99997 58999999863
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=326.92 Aligned_cols=208 Identities=24% Similarity=0.346 Sum_probs=172.9
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|+++++ +++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 68 (241)
T PRK14250 4 IEFKEVSYSS-------------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVDIK 68 (241)
T ss_pred EEEEeEEEEe-------------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhh
Confidence 5667776654 234599999999999999999999999999999999997654 5899999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHH
Q 000517 929 Q---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-AIKDSLVGIPGVNGLSTE 1004 (1449)
Q Consensus 929 ~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgG 1004 (1449)
. ...++.++|++|++.+++ .|++||+.+....+ . ...+.++++++.++|. +..++.+ ..||||
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G 135 (241)
T PRK14250 69 TIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDV-----KNLSGG 135 (241)
T ss_pred hcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHH
Confidence 2 234567999999988776 69999998653321 1 1134578899999996 4555543 479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEe
Q 000517 1005 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYC 1083 (1449)
Q Consensus 1005 qrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~ 1083 (1449)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..
T Consensus 136 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~ 213 (241)
T PRK14250 136 EAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLN-KGILVEY 213 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEe-CCEEEEe
Confidence 999999999999999999999999999999999999999999764 999999999986 4677899999998 5899998
Q ss_pred cCC
Q 000517 1084 GPL 1086 (1449)
Q Consensus 1084 G~~ 1086 (1449)
|++
T Consensus 214 ~~~ 216 (241)
T PRK14250 214 AKT 216 (241)
T ss_pred CCH
Confidence 875
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=327.44 Aligned_cols=213 Identities=22% Similarity=0.332 Sum_probs=170.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC------CCceEEEEcCCCccC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV------PPKTSAYISQNDLHI 257 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1449)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 35999999999999999999999999999999999999987 999999998875432 145699999999889
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGN 337 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 337 (1449)
+.+||+||+.++......... ... ..... ..+..++.+++.+||.+..++.+.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~~-~~~-~~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKPTWR-SLL-GRFSE------------------------EDKERALSALERVGLADKAYQRADQ 145 (243)
T ss_pred ccccHHHHHhhcccccccchh-hhh-ccccH------------------------HHHHHHHHHHHHcCcHhhhcCCccc
Confidence 999999999875321000000 000 00000 0012346678999998777777655
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL 417 (1449)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++. |..+++.++||++++|
T Consensus 146 -----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~t-H~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 146 -----LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINL-HQVDLAKKYADRIVGL 219 (243)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhcCeEEEE
Confidence 9999999999999999999999999999999999999999999998764466766655 5566788999999999
Q ss_pred eCCeEEEecChhhH
Q 000517 418 AEGKIVYHGPQDHV 431 (1449)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (1449)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999988765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=322.81 Aligned_cols=199 Identities=25% Similarity=0.399 Sum_probs=171.6
Q ss_pred eeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-ccccceEEEEccCCCCCCCCCHHHH
Q 000517 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFARVSGYCEQTDIHSPNITVEES 954 (1449)
Q Consensus 876 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~e~ 954 (1449)
+|+|+|++|+|||+++|+|+||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 79999999999999999999999999999999998665 58999999987543 1234679999999999999999999
Q ss_pred HHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000517 955 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034 (1449)
Q Consensus 955 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~ 1034 (1449)
+.+..... ........+.+.++++.++|.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPE-----TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcc-----cCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 12233445567889999999887777754 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1035 AAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1035 ~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|. +|++++.|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIML-NGKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEecCH
Confidence 999999999998764 999999999985 4677899999997 5899999875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=322.69 Aligned_cols=201 Identities=28% Similarity=0.356 Sum_probs=163.7
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC------CCceEEEEcCCC--cc
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV------PPKTSAYISQND--LH 256 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 256 (1449)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 5899999999999999999999999999999999999987 999999999876532 245799999997 46
Q ss_pred CCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC-ccccccc
Q 000517 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD-VCADTMV 335 (1449)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~v 335 (1449)
++.+||+||+.+.....+..... + . .+...+.+++.+||. ...++.+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~~---------~------------~-----------~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSKK---------E------------A-----------RKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcHH---------H------------H-----------HHHHHHHHHHHCCCChhHhhCCc
Confidence 67899999998865432211000 0 0 000123578888985 5667766
Q ss_pred cccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEE
Q 000517 336 GNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415 (1449)
Q Consensus 336 g~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~ 415 (1449)
++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.| ..+++.+++|+++
T Consensus 144 ~~-----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH-~~~~~~~~~d~i~ 217 (228)
T cd03257 144 HE-----LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITH-DLGVVAKIADRVA 217 (228)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhcCeEE
Confidence 65 99999999999999999999999999999999999999999999987644677777655 4567888999999
Q ss_pred EEeCCeEEEec
Q 000517 416 LMAEGKIVYHG 426 (1449)
Q Consensus 416 lL~~G~iv~~G 426 (1449)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=324.91 Aligned_cols=205 Identities=23% Similarity=0.373 Sum_probs=170.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCC-----------CCCceEEEEcCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF-----------VPPKTSAYISQN 253 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-----------~~~~~~~yv~Q~ 253 (1449)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 5899999999999999999999999999999999999987 99999999887532 113578999999
Q ss_pred CccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccc
Q 000517 254 DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADT 333 (1449)
Q Consensus 254 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt 333 (1449)
+.+++.+||+||+.++..... +.. ..+ ....++.+++.+||++..|+
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~-~~~--------~~~------------------------~~~~~~~~l~~~gl~~~~~~ 140 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVK-GEP--------KEE------------------------ATARARELLAKVGLAGKETS 140 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhc-CCC--------HHH------------------------HHHHHHHHHHHcCCcchhhC
Confidence 988999999999988543110 000 000 01124567889999887777
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.+++|+
T Consensus 141 ~~~~-----LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~-tH~~~~~~~~~d~ 213 (250)
T PRK11264 141 YPRR-----LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIV-THEMSFARDVADR 213 (250)
T ss_pred Chhh-----CChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEE-eCCHHHHHHhcCE
Confidence 7665 999999999999999999999999999999999999999999999875 36676665 5566788899999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000517 414 IILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~ 432 (1449)
+++|++|++++.|+.+++.
T Consensus 214 i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 214 AIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988763
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=325.11 Aligned_cols=200 Identities=24% Similarity=0.404 Sum_probs=167.7
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCCccCCCCCHHH
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRE 264 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (1449)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ...++|++|++.+++.+||+|
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~e 89 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQD 89 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHHH
Confidence 5899999999999999999999999999999999999987 99999999887542 345899999998889999999
Q ss_pred HHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCC
Q 000517 265 TVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGIS 344 (1449)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlS 344 (1449)
|+.+.....+.. ..+ ....++.+++.+||++..++.+++ ||
T Consensus 90 ~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS 130 (255)
T PRK11248 90 NVAFGLQLAGVE----------KMQ------------------------RLEIAHQMLKKVGLEGAEKRYIWQ-----LS 130 (255)
T ss_pred HHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCChhHhhCChhh-----CC
Confidence 998865432110 000 011246688999998877777765 99
Q ss_pred hhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe--CCeE
Q 000517 345 GGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA--EGKI 422 (1449)
Q Consensus 345 GGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~--~G~i 422 (1449)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++. |...++.++||+|++|+ +|++
T Consensus 131 gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivs-H~~~~~~~~~d~i~~l~~~~G~i 209 (255)
T PRK11248 131 GGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLIT-HDIEEAVFMATELVLLSPGPGRV 209 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEeCCCcEE
Confidence 99999999999999999999999999999999999999999998654466766654 55678889999999998 5999
Q ss_pred EEecChh
Q 000517 423 VYHGPQD 429 (1449)
Q Consensus 423 v~~G~~~ 429 (1449)
+..++.+
T Consensus 210 ~~~~~~~ 216 (255)
T PRK11248 210 VERLPLN 216 (255)
T ss_pred EEEecCC
Confidence 9888653
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=329.07 Aligned_cols=205 Identities=27% Similarity=0.364 Sum_probs=170.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC---CCceEEEEcCCCc-cCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV---PPKTSAYISQNDL-HIAE 259 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (1449)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999999987 999999999875432 2457999999963 6778
Q ss_pred CCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccc
Q 000517 260 MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAM 339 (1449)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 339 (1449)
+||+||+.++....+.. . .+ ....++++++.+||.+..++.+++
T Consensus 99 ~tv~enl~~~~~~~~~~-~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-- 142 (271)
T PRK13632 99 ATVEDDIAFGLENKKVP-P---------KK------------------------MKDIIDDLAKKVGMEDYLDKEPQN-- 142 (271)
T ss_pred ccHHHHHHhHHHHcCCC-H---------HH------------------------HHHHHHHHHHHcCCHHHhhCCccc--
Confidence 99999998865322110 0 00 011346688999998888887765
Q ss_pred cccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeC
Q 000517 340 RRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419 (1449)
Q Consensus 340 ~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~ 419 (1449)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++++..++|+|++.|++ +++ ..+|++++|++
T Consensus 143 ---LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~-~~~d~v~~l~~ 217 (271)
T PRK13632 143 ---LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM-DEA-ILADKVIVFSE 217 (271)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEech-hHH-hhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999998764457777776665 455 47999999999
Q ss_pred CeEEEecChhhHH
Q 000517 420 GKIVYHGPQDHVL 432 (1449)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1449)
|+++..|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999987764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=329.96 Aligned_cols=223 Identities=19% Similarity=0.278 Sum_probs=178.5
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|+++++..+.+ ....+.+.+|+|+|++|++||+++|+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 667888776531100 0001124699999999999999999999999999999999998765 5899999998753
Q ss_pred c---ccccceEEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCC
Q 000517 929 Q---ETFARVSGYCEQTDI--HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-AIKDSLVGIPGVNGLS 1002 (1449)
Q Consensus 929 ~---~~~~~~~gyv~Q~d~--~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LS 1002 (1449)
. ...++.++|++|++. +.+.+|+.|++.+...... ........+.++++++.++|. +..+..+ ..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhcC
Confidence 2 123456999999875 5678899999988654432 122334456788999999994 5555553 3799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEE
Q 000517 1003 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081 (1449)
Q Consensus 1003 gGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v 1081 (1449)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|. +|+++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~-~G~i~ 229 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMH-QGEVV 229 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 5777899999997 58999
Q ss_pred EecCC
Q 000517 1082 YCGPL 1086 (1449)
Q Consensus 1082 ~~G~~ 1086 (1449)
+.|+.
T Consensus 230 ~~~~~ 234 (267)
T PRK15112 230 ERGST 234 (267)
T ss_pred ecCCH
Confidence 98875
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=325.95 Aligned_cols=194 Identities=26% Similarity=0.367 Sum_probs=165.5
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCCccCCCCCHHH
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRE 264 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (1449)
.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 5899999999999999999999999999999999999987 9999999976543 2457999999998889899999
Q ss_pred HHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCC
Q 000517 265 TVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGIS 344 (1449)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlS 344 (1449)
|+.+... .. . +..++.+++.+||.+..+..+++ ||
T Consensus 101 nl~~~~~-----~~--------~---------------------------~~~~~~~l~~~gl~~~~~~~~~~-----LS 135 (257)
T PRK11247 101 NVGLGLK-----GQ--------W---------------------------RDAALQALAAVGLADRANEWPAA-----LS 135 (257)
T ss_pred HHHhccc-----ch--------H---------------------------HHHHHHHHHHcCChhHhcCChhh-----CC
Confidence 9987421 00 0 01235678899998877777765 99
Q ss_pred hhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEEE
Q 000517 345 GGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVY 424 (1449)
Q Consensus 345 GGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv~ 424 (1449)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+..++|+|++. |...++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivs-Hd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT-HDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999998765567776654 55667888999999999999999
Q ss_pred ecChh
Q 000517 425 HGPQD 429 (1449)
Q Consensus 425 ~G~~~ 429 (1449)
+|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=336.29 Aligned_cols=208 Identities=25% Similarity=0.302 Sum_probs=173.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC------CCceEEEEcCCC--c
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV------PPKTSAYISQND--L 255 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d--~ 255 (1449)
..+|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.+.. .++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 46999999999999999999999999999999999999987 999999999876543 145799999997 5
Q ss_pred cCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC-cccccc
Q 000517 256 HIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD-VCADTM 334 (1449)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 334 (1449)
++|.+||.||+.+..+...... .+++ .+..++.+++.+||. ...++.
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~~--------~~~~------------------------~~~~~~~~l~~vgl~~~~~~~~ 158 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPKL--------SRQE------------------------VKDRVKAMMLKVGLLPNLINRY 158 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccCC--------CHHH------------------------HHHHHHHHHHHcCCChHHhcCC
Confidence 8889999999998654321100 0000 011345688999994 456776
Q ss_pred ccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeE
Q 000517 335 VGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDI 414 (1449)
Q Consensus 335 vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v 414 (1449)
+.+ |||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+..+.|+|+ ++|+...+.+++|+|
T Consensus 159 p~~-----LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~-iTHdl~~~~~~~dri 232 (331)
T PRK15079 159 PHE-----FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIF-IAHDLAVVKHISDRV 232 (331)
T ss_pred ccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEE-EeCCHHHHHHhCCEE
Confidence 655 99999999999999999999999999999999999999999999997654566555 567788898999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 000517 415 ILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1449)
++|.+|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998875
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=322.09 Aligned_cols=198 Identities=28% Similarity=0.459 Sum_probs=166.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC--CCceEEEEcCCCccCCCCCH
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV--PPKTSAYISQNDLHIAEMTV 262 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 262 (1449)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 5999999999999999999999999999999999999987 999999998875321 24579999999988999999
Q ss_pred HHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccccc
Q 000517 263 RETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG 342 (1449)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 342 (1449)
+||+.+.....+... .+ ....++++++.+||++..++.+++
T Consensus 96 ~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 136 (218)
T cd03266 96 RENLEYFAGLYGLKG----------DE------------------------LTARLEELADRLGMEELLDRRVGG----- 136 (218)
T ss_pred HHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCHHHHhhhhhh-----
Confidence 999988654322100 00 011346688999998888887765
Q ss_pred CChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeE
Q 000517 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422 (1449)
Q Consensus 343 lSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~i 422 (1449)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++. |..+++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~t-H~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFST-HIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865 466766665 455688899999999999999
Q ss_pred EEec
Q 000517 423 VYHG 426 (1449)
Q Consensus 423 v~~G 426 (1449)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=318.55 Aligned_cols=192 Identities=27% Similarity=0.358 Sum_probs=161.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCCc-cCCCCCH
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDL-HIAEMTV 262 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 262 (1449)
.++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 35999999999999999999999999999999999999997 9999999988754333457999999864 3557899
Q ss_pred HHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccccc
Q 000517 263 RETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG 342 (1449)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 342 (1449)
+||+.+.....+ . ....++++++.+||.+..++.+++
T Consensus 90 ~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (205)
T cd03226 90 REELLLGLKELD--A------------------------------------GNEQAETVLKDLDLYALKERHPLS----- 126 (205)
T ss_pred HHHHhhhhhhcC--c------------------------------------cHHHHHHHHHHcCCchhcCCCchh-----
Confidence 999987543210 0 001245678999999888888765
Q ss_pred CChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeE
Q 000517 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422 (1449)
Q Consensus 343 lSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~i 422 (1449)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++. |..+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~s-H~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVIT-HDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865 467777665 455678889999999999997
Q ss_pred E
Q 000517 423 V 423 (1449)
Q Consensus 423 v 423 (1449)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=326.47 Aligned_cols=207 Identities=23% Similarity=0.338 Sum_probs=167.1
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCC--C-eeEEEEEEcCccCcc-----ccccceEEEEccCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTS--G-YVEGEIKISGYPKVQ-----ETFARVSGYCEQTDIH 945 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~--~-~~~G~I~i~G~~~~~-----~~~~~~~gyv~Q~d~~ 945 (1449)
+.+|+|+||+|++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|.+... ..+++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 4699999999999999999999999999999999997542 1 258999999987532 1346679999999888
Q ss_pred CCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000517 946 SPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1025 (1449)
Q Consensus 946 ~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLD 1025 (1449)
++. |+.||+.+....+.. .......++.++++++.++|.+........ .+..||||||||++|||+|+.+|++|+||
T Consensus 98 ~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LS~Gq~qrv~laral~~~p~llllD 174 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFELSGGQQQRLCIARAIAVKPTMLLMD 174 (251)
T ss_pred ccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhhc-ChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 875 999999886433211 112233445678899999986522111111 13479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1026 EPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1026 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|+ +|++++.|+.
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 232 (251)
T PRK14244 175 EPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQ-SGRIVEYNTT 232 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999985 4899999999986 5677899999998 5899998875
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=322.13 Aligned_cols=201 Identities=27% Similarity=0.360 Sum_probs=167.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCccCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 260 (1449)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL 90 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC
Confidence 5999999999999999999999999999999999999997 9999999988754322 34699999999999999
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhC-CCccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILG-LDVCADTMVGNAM 339 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lg-L~~~~dt~vg~~~ 339 (1449)
||+||+.++....+.. . ....+.+++.++ +.+..++.+++
T Consensus 91 tv~~~l~~~~~~~~~~----------~---------------------------~~~~~~~l~~~~~l~~~~~~~~~~-- 131 (230)
T TIGR03410 91 TVEENLLTGLAALPRR----------S---------------------------RKIPDEIYELFPVLKEMLGRRGGD-- 131 (230)
T ss_pred cHHHHHHHHHHhcCcc----------h---------------------------HHHHHHHHHHHHhHHHHhhCChhh--
Confidence 9999998865432100 0 001244566665 55556666655
Q ss_pred cccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeC
Q 000517 340 RRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419 (1449)
Q Consensus 340 ~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~ 419 (1449)
||||||||++||++|+.+|++++|||||+|||+.++.++.+.|+++++..+.|+|++. |..+++.+++|+|++|++
T Consensus 132 ---LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s-H~~~~~~~~~d~v~~l~~ 207 (230)
T TIGR03410 132 ---LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVE-QYLDFARELADRYYVMER 207 (230)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEe-CCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999998764466776665 556688889999999999
Q ss_pred CeEEEecChhhH
Q 000517 420 GKIVYHGPQDHV 431 (1449)
Q Consensus 420 G~iv~~G~~~~~ 431 (1449)
|+++..|+.+++
T Consensus 208 g~i~~~~~~~~~ 219 (230)
T TIGR03410 208 GRVVASGAGDEL 219 (230)
T ss_pred CEEEEECCHHHc
Confidence 999999998776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=321.60 Aligned_cols=201 Identities=27% Similarity=0.363 Sum_probs=167.0
Q ss_pred eeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC--eeEEEEEEcCccCccccc-cceEEEEccCCC--CCCCCC
Q 000517 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG--YVEGEIKISGYPKVQETF-ARVSGYCEQTDI--HSPNIT 950 (1449)
Q Consensus 876 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~--~~~G~I~i~G~~~~~~~~-~~~~gyv~Q~d~--~~~~lT 950 (1449)
+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+...... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 578999999999999999999999999999999976541 148999999987643222 357999999974 557789
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc---ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000517 951 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD---AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1027 (1449)
Q Consensus 951 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~---~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEP 1027 (1449)
+.|++.+...... . .....++.++++++.++|. +..+..+ ..|||||||||+|||+|+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG--K-LSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC--c-cHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543321 1 1233456789999999997 3455554 37999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1028 TTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1028 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|+|||+.+...+.+.|++++++ |+|||+++|+++ ++...+|++++|. +|+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMD-DGRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999764 899999999986 5777899999997 5899998875
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=370.29 Aligned_cols=209 Identities=27% Similarity=0.408 Sum_probs=175.3
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++|+|+++... +++.+|+|+|++|+|||++||+||||||||||+++|+|.. + .+|+|.+||.+.
T Consensus 349 ~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEec
Confidence 588999986432 1246999999999999999999999999999999999987 5 489999999875
Q ss_pred c---cccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000517 928 V---QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-------IKDSLVGIPG 997 (1449)
Q Consensus 928 ~---~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 997 (1449)
. ...+++.++||+|++.++. .|++||+.++. ++.+ ++.++++++..++.+ -.|+.+|..|
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDAS----DEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred ccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCC----HHHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 4 3567889999999998875 59999998741 2222 244566666666543 4578888766
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
. .||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++. +++|+|+++|+++ ....+|++++|+ +
T Consensus 484 ~-~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~-~ 558 (588)
T PRK11174 484 A-GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQ-D 558 (588)
T ss_pred C-CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEe-C
Confidence 4 599999999999999999999999999999999999999999999875 5899999999985 567899999997 5
Q ss_pred cEEEEecCC
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~v~~G~~ 1086 (1449)
|++++.|+.
T Consensus 559 G~i~e~G~~ 567 (588)
T PRK11174 559 GQIVQQGDY 567 (588)
T ss_pred CeEeecCCH
Confidence 899999974
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=317.18 Aligned_cols=202 Identities=25% Similarity=0.341 Sum_probs=181.8
Q ss_pred eeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-------ccccceEEEEccCCCCCC
Q 000517 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-------ETFARVSGYCEQTDIHSP 947 (1449)
Q Consensus 875 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-------~~~~~~~gyv~Q~d~~~~ 947 (1449)
.-++|+|++|+.||++.|||-||||||||+++|.+...+ +.|+|.++|.++.. +-.++.++.|+|+-.++|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep--t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP--TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 357899999999999999999999999999999998765 68999999987532 123467999999999999
Q ss_pred CCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000517 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1027 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEP 1027 (1449)
+.||.||..|+..++ .++++++++++.+.|+.+||..+.+..+ ++||||+||||.+||||+.+|+||+||||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 999999999998776 4567889999999999999999999885 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCC
Q 000517 1028 TTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGK 1088 (1449)
Q Consensus 1028 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~ 1088 (1449)
.|.|||--+..+++-|.++.++ ++|||++|||.+ |.+..-||+.+|+ +|+++..|++++
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~e 251 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEE 251 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHH
Confidence 9999999999999999888654 899999999987 6889999999997 699999999853
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=330.08 Aligned_cols=206 Identities=26% Similarity=0.373 Sum_probs=171.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCC--C---CCCceEEEEcCCCc-cCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE--F---VPPKTSAYISQNDL-HIA 258 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~d~-~~~ 258 (1449)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+.
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhc
Confidence 5899999999999999999999999999999999999987 9999999998741 1 12357999999863 345
Q ss_pred CCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 259 EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
..||+||+.++....+.. ..+ ....++++++.+||.+..|+.+++
T Consensus 97 ~~tv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~- 141 (283)
T PRK13636 97 SASVYQDVSFGAVNLKLP----------EDE------------------------VRKRVDNALKRTGIEHLKDKPTHC- 141 (283)
T ss_pred cccHHHHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHCCChhhhhCCccc-
Confidence 689999998865432110 000 011356788999999888888766
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|++++ +|..+++.++||++++|+
T Consensus 142 ----LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillv-sH~~~~~~~~~dri~~l~ 216 (283)
T PRK13636 142 ----LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-THDIDIVPLYCDNVFVMK 216 (283)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE-ecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999976546777766 455677888999999999
Q ss_pred CCeEEEecChhhHHH
Q 000517 419 EGKIVYHGPQDHVLA 433 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1449)
+|++++.|+.+++..
T Consensus 217 ~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 217 EGRVILQGNPKEVFA 231 (283)
T ss_pred CCEEEEeCCHHHHhc
Confidence 999999999988753
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=325.55 Aligned_cols=215 Identities=22% Similarity=0.276 Sum_probs=174.5
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISGY 925 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G~ 925 (1449)
+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.
T Consensus 5 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (251)
T PRK14270 5 MESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGK 71 (251)
T ss_pred EEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCE
Confidence 56677765432 246999999999999999999999999999999999975431 25799999998
Q ss_pred cCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000517 926 PKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGIP 996 (1449)
Q Consensus 926 ~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 996 (1449)
+... ...++.+||++|++.+++ .|++||+.|....... .......+.++++++.++|.+ ..+..
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 144 (251)
T PRK14270 72 NIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKS---- 144 (251)
T ss_pred ecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCC----
Confidence 7532 134567999999998887 8999999886543211 122344456788999998742 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEec
Q 000517 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 997 ~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~ 1076 (1449)
...||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|.
T Consensus 145 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~- 220 (251)
T PRK14270 145 -ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL- 220 (251)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE-
Confidence 347999999999999999999999999999999999999999999999876 689999999986 5778899999997
Q ss_pred CcEEEEecCCC
Q 000517 1077 GGRIIYCGPLG 1087 (1449)
Q Consensus 1077 gG~~v~~G~~~ 1087 (1449)
+|++++.|+.+
T Consensus 221 ~G~i~~~~~~~ 231 (251)
T PRK14270 221 MGDLIEFNKTE 231 (251)
T ss_pred CCeEEEeCCHH
Confidence 58999999863
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=333.54 Aligned_cols=222 Identities=22% Similarity=0.276 Sum_probs=177.7
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCC---CeeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTS---GYVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~I~i~G 924 (1449)
.+.++|+++++.. +...+|+|+|++|++||++||+|+||||||||+++|+|.... .+.+|+|.+||
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 4678888776531 124599999999999999999999999999999999997532 13479999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVN 999 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 999 (1449)
.++.. ..+++.++||+|++.+++ .|++||+.|+..... ....+..++.++++++.++|.+..++.++.. ..
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~-~~ 224 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNG--INDRKILEKIVEKSLKSAALWDEVKDDLDKA-GN 224 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcC--CChHHHHHHHHHHHHHHcCCcchhhhhhhCC-cc
Confidence 98642 245678999999998774 799999998643221 1112223345788899988854334444443 34
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcE
Q 000517 1000 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079 (1449)
Q Consensus 1000 ~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~ 1079 (1449)
.||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||++. .+.+.+|++++|+ +|+
T Consensus 225 ~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~-~G~ 301 (329)
T PRK14257 225 ALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFY-QGW 301 (329)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 7999999999999999999999999999999999999999999999875 799999999986 4667799999998 589
Q ss_pred EEEecCCC
Q 000517 1080 IIYCGPLG 1087 (1449)
Q Consensus 1080 ~v~~G~~~ 1087 (1449)
+++.|++.
T Consensus 302 i~e~g~~~ 309 (329)
T PRK14257 302 IEEAGETK 309 (329)
T ss_pred EEEeCCHH
Confidence 99999873
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=318.11 Aligned_cols=208 Identities=19% Similarity=0.292 Sum_probs=155.2
Q ss_pred cEEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc
Q 000517 847 LTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP 926 (1449)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~ 926 (1449)
-.+..+|++|.++ +.+.++++++|-|.--..+||+||||.||||||++|.|...| ..|+..-|
T Consensus 585 PvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKn--- 647 (807)
T KOG0066|consen 585 PVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKN--- 647 (807)
T ss_pred CeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhcc---
Confidence 3466777777553 346789999999999999999999999999999999998776 46665322
Q ss_pred CccccccceEEEEccCC--CCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000517 927 KVQETFARVSGYCEQTD--IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTE 1004 (1449)
Q Consensus 927 ~~~~~~~~~~gyv~Q~d--~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1004 (1449)
.+-.+|+..|+. .+...-|.-|.|.-.. ..+. +.....|-.+||...++++- +..||||
T Consensus 648 -----hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F------Nlpy----q~ARK~LG~fGL~sHAHTik----ikdLSGG 708 (807)
T KOG0066|consen 648 -----HRLRIGWFDQHANEALNGEETPVEYLQRKF------NLPY----QEARKQLGTFGLASHAHTIK----IKDLSGG 708 (807)
T ss_pred -----ceeeeechhhhhHHhhccccCHHHHHHHhc------CCCh----HHHHHHhhhhhhhhccceEe----eeecCCc
Confidence 234689888864 3344556666654211 1122 23456788999998888863 4579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1005 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1005 qrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
||-||++|.--++.|+||||||||++||..+...+-++|++. ...||+++||-.. +.+.-|.+.++.+.|----.|
T Consensus 709 QKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eIdG 784 (807)
T KOG0066|consen 709 QKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEIDG 784 (807)
T ss_pred chHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhccc
Confidence 999999999999999999999999999999999999999886 5679999999764 556667888887665444455
Q ss_pred CCCCChhHHH
Q 000517 1085 PLGKHSSQVI 1094 (1449)
Q Consensus 1085 ~~~~~~~~~~ 1094 (1449)
..++...+++
T Consensus 785 dFeDYkkEVL 794 (807)
T KOG0066|consen 785 DFEDYKKEVL 794 (807)
T ss_pred cHHHHHHHHH
Confidence 5543333333
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=327.18 Aligned_cols=215 Identities=22% Similarity=0.324 Sum_probs=174.6
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCC--CC-eeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT--SG-YVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G 924 (1449)
.+.++|+++.+. ++.+|+|+|++|++||+++|+|+||||||||+++|+|... +. ..+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 367777776542 2459999999999999999999999999999999999754 21 1479999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGI 995 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 995 (1449)
.+... ...++.+||++|++.+++. |++||+.+....+. ....++..+.++++++.+++.+ ..++.
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--- 152 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--- 152 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCC---
Confidence 87531 2345679999999888875 99999988643321 1122334456788899999853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
..+||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 153 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 228 (259)
T PRK14274 153 --ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY 228 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999865 799999999986 5778899999997
Q ss_pred cCcEEEEecCC
Q 000517 1076 TGGRIIYCGPL 1086 (1449)
Q Consensus 1076 ~gG~~v~~G~~ 1086 (1449)
+|+++..|++
T Consensus 229 -~G~i~~~g~~ 238 (259)
T PRK14274 229 -MGELVECNDT 238 (259)
T ss_pred -CCEEEEECCH
Confidence 5899999986
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=318.00 Aligned_cols=196 Identities=29% Similarity=0.482 Sum_probs=164.5
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC--CCceEEEEcCCCccCCCCCH
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV--PPKTSAYISQNDLHIAEMTV 262 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 262 (1449)
++|+|+|+.+++| +++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 5899999999999 99999999999999999999999997 999999998775422 24578999999999999999
Q ss_pred HHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccccc
Q 000517 263 RETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG 342 (1449)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rG 342 (1449)
+||+.+.....+... .+ ....++.+++.+||++..++.+++
T Consensus 90 ~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (211)
T cd03264 90 REFLDYIAWLKGIPS----------KE------------------------VKARVDEVLELVNLGDRAKKKIGS----- 130 (211)
T ss_pred HHHHHHHHHHhCCCH----------HH------------------------HHHHHHHHHHHCCCHHHHhCchhh-----
Confidence 999988654322100 00 011245678899998877887765
Q ss_pred CChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeE
Q 000517 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422 (1449)
Q Consensus 343 lSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~i 422 (1449)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++ +|..+++.+++|++++|++|++
T Consensus 131 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~v-sH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 131 LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILS-THIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEE-cCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999864 4565554 5666778889999999999999
Q ss_pred EEec
Q 000517 423 VYHG 426 (1449)
Q Consensus 423 v~~G 426 (1449)
++.|
T Consensus 208 ~~~g 211 (211)
T cd03264 208 VFEG 211 (211)
T ss_pred EecC
Confidence 8765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=321.17 Aligned_cols=196 Identities=24% Similarity=0.372 Sum_probs=162.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-------CceEEEEcCCCcc
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-------PKTSAYISQNDLH 256 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1449)
.++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 45999999999999999999999999999999999999987 9999999998765332 1469999999888
Q ss_pred CCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccc
Q 000517 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVG 336 (1449)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 336 (1449)
++.+||+||+.+........ ..+ ....++.+++.+||++..++.++
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS----------VKE------------------------AKERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhhCChh
Confidence 88999999998865422110 000 01124567889999877777776
Q ss_pred ccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEE
Q 000517 337 NAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416 (1449)
Q Consensus 337 ~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~l 416 (1449)
. |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++ +.+|++++
T Consensus 141 ~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~-~~~d~v~~ 213 (221)
T TIGR02211 141 E-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL-ELA-KKLDRVLE 213 (221)
T ss_pred h-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-hhcCEEEE
Confidence 5 9999999999999999999999999999999999999999999998765567877776554 455 45799999
Q ss_pred EeCCeEE
Q 000517 417 MAEGKIV 423 (1449)
Q Consensus 417 L~~G~iv 423 (1449)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=318.33 Aligned_cols=197 Identities=26% Similarity=0.367 Sum_probs=163.3
Q ss_pred cccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCC
Q 000517 867 RGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHS 946 (1449)
Q Consensus 867 ~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~ 946 (1449)
....++++.+|+|+||+|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+...+.
T Consensus 28 ~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~---------~~~~~~~~ 96 (224)
T cd03220 28 RKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL---------LGLGGGFN 96 (224)
T ss_pred hhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh---------hcccccCC
Confidence 34455667899999999999999999999999999999999997654 58999999976421 11123345
Q ss_pred CCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000517 947 PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1026 (1449)
Q Consensus 947 ~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDE 1026 (1449)
+.+||+||+.+....+. ......++.++++++.++|.+..++.++ .||||||||++|||+|+.+|++|+|||
T Consensus 97 ~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 97 PELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred CCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 77999999988654321 2233445567889999999888777754 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1027 PTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1027 PTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|. +|++++.|
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 224 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLE-KGKIRFDG 224 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 99999999999999999998777899999999976 5667899999997 58988765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=325.45 Aligned_cols=214 Identities=24% Similarity=0.314 Sum_probs=173.1
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCC--CC-eeEEEEEEcCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT--SG-YVEGEIKISGY 925 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G~ 925 (1449)
+.++|+++++. ++.+|+|+|++|++||+++|+||||||||||+++|+|... +. ..+|+|.++|.
T Consensus 6 l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~ 72 (252)
T PRK14239 6 LQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGH 72 (252)
T ss_pred EEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCE
Confidence 66777776542 2459999999999999999999999999999999999632 21 14799999998
Q ss_pred cCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000517 926 PKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGIP 996 (1449)
Q Consensus 926 ~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 996 (1449)
+... ..+++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 145 (252)
T PRK14239 73 NIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS---- 145 (252)
T ss_pred ECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC----
Confidence 7531 234567999999988876 899999988654321 1112334466788899998743 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEec
Q 000517 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 997 ~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~ 1076 (1449)
+..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|.
T Consensus 146 -~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~- 221 (252)
T PRK14239 146 -ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL- 221 (252)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE-
Confidence 347999999999999999999999999999999999999999999999865 699999999986 5778899999998
Q ss_pred CcEEEEecCC
Q 000517 1077 GGRIIYCGPL 1086 (1449)
Q Consensus 1077 gG~~v~~G~~ 1086 (1449)
+|++++.|+.
T Consensus 222 ~G~i~~~g~~ 231 (252)
T PRK14239 222 DGDLIEYNDT 231 (252)
T ss_pred CCEEEEeCCH
Confidence 5899999875
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=310.58 Aligned_cols=190 Identities=50% Similarity=0.872 Sum_probs=160.5
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCC--CCCeeEEEEEEcCc
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRK--TSGYVEGEIKISGY 925 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~--~~~~~~G~I~i~G~ 925 (1449)
.+.++|+++.++... ....+.+|+|+|+++++||+++|+||||||||||+++|+|.. .+ .+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~--~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG--VSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC--CceEEEECCE
Confidence 466777777653210 001246999999999999999999999999999999999986 54 5899999998
Q ss_pred cCccccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000517 926 PKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQ 1005 (1449)
Q Consensus 926 ~~~~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 1005 (1449)
+......++.++|++|++.+++.+|++||+.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 7654455678999999998889999999997642110 499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1006 RKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1006 rqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|+|+++|+++.++.+.+|++++|. +|++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~-~G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLS-QGRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEe-CCEEEecC
Confidence 9999999999999999999999999999999999999999977799999999998656778899999997 58988764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=371.93 Aligned_cols=205 Identities=26% Similarity=0.416 Sum_probs=170.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1449)
.++|+|+|++++|||.++|+||||||||||+|+|+|.++|+ +|+|.+||+++++..+ ++.++||+|++.+|+ .
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-G 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-c
Confidence 45899999999999999999999999999999999999998 9999999999887654 578999999888765 6
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
|++|||.++.. .+.++..+++...+.. +.++ .+++..||.+|+. .
T Consensus 542 TI~eNi~~~~~--------------------------~~~e~i~~al~~a~l~------~~i~--~lp~G~dt~ige~-G 586 (686)
T TIGR03797 542 SIFENIAGGAP--------------------------LTLDEAWEAARMAGLA------EDIR--AMPMGMHTVISEG-G 586 (686)
T ss_pred cHHHHHhcCCC--------------------------CCHHHHHHHHHHcCcH------HHHH--hccccccccccCC-C
Confidence 99999987421 1112223333333322 1222 3678899999975 4
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
..||||||||++||||++++|++|+||||||+||+.++.+|.+.|+++ ++|+|+..|++ ++.+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEECC
Confidence 569999999999999999999999999999999999999999999875 46887776665 567889999999999
Q ss_pred eEEEecChhhHHH
Q 000517 421 KIVYHGPQDHVLA 433 (1449)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1449)
+++.+|+++++.+
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=315.07 Aligned_cols=179 Identities=44% Similarity=0.819 Sum_probs=156.0
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC---CCCCeeeEEEECCccCCCCC--CCceEEEEcCCCccC
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD---PSLKVTGEVSYNGYKLEEFV--PPKTSAYISQNDLHI 257 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~---~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~ 257 (1449)
++.+|+|+|+.+++|++++|+||||||||||+++|+|.++ |+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~ 95 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHF 95 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEecccccC
Confidence 3569999999999999999999999999999999999998 55 999999999876432 345799999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGN 337 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 337 (1449)
+.+||+||+.++++.. .++.+
T Consensus 96 ~~~tv~~~l~~~~~~~---------------------------------------------------------~~~~~-- 116 (202)
T cd03233 96 PTLTVRETLDFALRCK---------------------------------------------------------GNEFV-- 116 (202)
T ss_pred CCCcHHHHHhhhhhhc---------------------------------------------------------cccch--
Confidence 9999999998753210 12222
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL 417 (1449)
+.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+++++||+.+++.+++|++++|
T Consensus 117 ---~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l 193 (202)
T cd03233 117 ---RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVL 193 (202)
T ss_pred ---hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEE
Confidence 23999999999999999999999999999999999999999999999876546788888888888999999999999
Q ss_pred eCCeEEEec
Q 000517 418 AEGKIVYHG 426 (1449)
Q Consensus 418 ~~G~iv~~G 426 (1449)
++|++++.|
T Consensus 194 ~~G~i~~~g 202 (202)
T cd03233 194 YEGRQIYYG 202 (202)
T ss_pred ECCEEEecC
Confidence 999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=324.25 Aligned_cols=214 Identities=24% Similarity=0.345 Sum_probs=173.2
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISGY 925 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G~ 925 (1449)
+.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14240 4 ISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQ 70 (250)
T ss_pred EEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 56677765442 245999999999999999999999999999999999964321 14799999998
Q ss_pred cCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000517 926 PKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGIP 996 (1449)
Q Consensus 926 ~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 996 (1449)
+... ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.++++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~---- 143 (250)
T PRK14240 71 DIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKS---- 143 (250)
T ss_pred EccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcC----
Confidence 7532 234667999999988877 8999999986543211 122334567888899988743 23443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEec
Q 000517 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 997 ~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~ 1076 (1449)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|++++|.
T Consensus 144 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~- 219 (250)
T PRK14240 144 -ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFL- 219 (250)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEE-
Confidence 34799999999999999999999999999999999999999999999985 4899999999975 5778899999998
Q ss_pred CcEEEEecCC
Q 000517 1077 GGRIIYCGPL 1086 (1449)
Q Consensus 1077 gG~~v~~G~~ 1086 (1449)
+|+++..|+.
T Consensus 220 ~G~i~~~~~~ 229 (250)
T PRK14240 220 NGEIVEFGDT 229 (250)
T ss_pred CCEEEEeCCH
Confidence 5899998875
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=326.09 Aligned_cols=216 Identities=24% Similarity=0.330 Sum_probs=175.9
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC-e--eEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG-Y--VEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~-~--~~G~I~i~G 924 (1449)
.+.++|+++.++ +..+|+|+|+++++||+++|+|+||||||||+++|+|...+. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 366777776542 245999999999999999999999999999999999975532 1 479999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc----ccccccccC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----AIKDSLVGI 995 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 995 (1449)
.+... ..+++.++|++|++.+++ .|++||+.+....+. .......++.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87532 234567999999998887 899999987654332 112233446678889999884 233433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||++||+++ ++.+.+|++++|.
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 347999999999999999999999999999999999999999999999865 699999999986 5778899999997
Q ss_pred c----CcEEEEecCC
Q 000517 1076 T----GGRIIYCGPL 1086 (1449)
Q Consensus 1076 ~----gG~~v~~G~~ 1086 (1449)
. +|++++.|+.
T Consensus 224 ~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 224 TDESRIGQMVEFGVT 238 (259)
T ss_pred ccCCCCceEEEeCCH
Confidence 3 4899999986
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=327.97 Aligned_cols=216 Identities=24% Similarity=0.330 Sum_probs=178.7
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|++++++. .....+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEC
Confidence 3667787765531 0123599999999999999999999999999999999998764 589999999875
Q ss_pred cc---ccccceEEEEccCCC-CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000517 928 VQ---ETFARVSGYCEQTDI-HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLST 1003 (1449)
Q Consensus 928 ~~---~~~~~~~gyv~Q~d~-~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1003 (1449)
.. ...++.+||++|++. .++..||.||+.+..... ....+...+.++++++.+||.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 42 235678999999974 567789999998764322 1233344567889999999988777764 37999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEE
Q 000517 1004 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIY 1082 (1449)
Q Consensus 1004 GqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~ 1082 (1449)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..+|++++|. +|+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~-~G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMK-AGEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999875 9999999999863 4 4699999998 589999
Q ss_pred ecCC
Q 000517 1083 CGPL 1086 (1449)
Q Consensus 1083 ~G~~ 1086 (1449)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 9876
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=324.08 Aligned_cols=205 Identities=31% Similarity=0.506 Sum_probs=170.7
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1449)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (258)
T PRK13548 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFT 92 (258)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCC
Confidence 5899999999999999999999999999999999999987 9999999987654321 356899999988888899
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|+||+.+.....+.. . ++ .+..++.+++.+||++..++.+++
T Consensus 93 v~e~l~~~~~~~~~~-~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~---- 134 (258)
T PRK13548 93 VEEVVAMGRAPHGLS-R---------AE------------------------DDALVAAALAQVDLAHLAGRDYPQ---- 134 (258)
T ss_pred HHHHHHhhhcccCCC-c---------HH------------------------HHHHHHHHHHHcCCHhHhcCCccc----
Confidence 999998864321100 0 00 011245678999998877888766
Q ss_pred cCChhhhhhHHHHHHHh------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEE
Q 000517 342 GISGGQKKRLTTGEMIV------GPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~------~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~ 415 (1449)
|||||||||+||+||+ .+|++++|||||+|||+.++..+.+.|+++++..+.|+|++. |..+++.+++|+|+
T Consensus 135 -LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s-H~~~~~~~~~d~i~ 212 (258)
T PRK13548 135 -LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVL-HDLNLAARYADRIV 212 (258)
T ss_pred -CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE-CCHHHHHHhcCEEE
Confidence 9999999999999999 599999999999999999999999999998744566766655 55678888999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000517 416 LMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1449)
+|++|++++.|+.+++.
T Consensus 213 ~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 213 LLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEECCEEEeeCCHHHHh
Confidence 99999999999987764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=327.64 Aligned_cols=206 Identities=27% Similarity=0.350 Sum_probs=171.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC----CCceEEEEcCCCc-cCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV----PPKTSAYISQNDL-HIA 258 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 258 (1449)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 45999999999999999999999999999999999999997 999999999875421 2467999999864 344
Q ss_pred CCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 259 EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
..||.||+.|+....+... .+ .+..++++++.+||++..++.+++
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~- 144 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------EE------------------------IRERVDESLKKVGMYEYRRHAPHL- 144 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------HH------------------------HHHHHHHHHHHCCCHhHhhCCccc-
Confidence 5799999998754322110 00 011356789999999888888876
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.|++ .++.. +|++++|+
T Consensus 145 ----LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~-~~~~~-~d~v~~l~ 218 (280)
T PRK13633 145 ----LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYM-EEAVE-ADRIIVMD 218 (280)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHhc-CCEEEEEE
Confidence 9999999999999999999999999999999999999999999998765577877776554 45654 99999999
Q ss_pred CCeEEEecChhhHHH
Q 000517 419 EGKIVYHGPQDHVLA 433 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1449)
+|+++++|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 219 SGKVVMEGTPKEIFK 233 (280)
T ss_pred CCEEEEecCHHHHhc
Confidence 999999999988753
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=357.88 Aligned_cols=219 Identities=26% Similarity=0.364 Sum_probs=182.5
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
++++|+++++ +++.+|+|+||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 5 i~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAF-------------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEe-------------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 5667776554 234699999999999999999999999999999999998665 4899999998753
Q ss_pred c----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccC-CCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000517 929 Q----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLA-PEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLST 1003 (1449)
Q Consensus 929 ~----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 1003 (1449)
. ...++.+||++|++.+++.+||+|++.++...+.. ........++.++++++.+||.+..+..++ .|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCH
Confidence 2 11245699999999889999999999886432211 111223345668899999999988777754 7999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEe
Q 000517 1004 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYC 1083 (1449)
Q Consensus 1004 GqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~ 1083 (1449)
|||||++||+||+.+|++|||||||+|||+.++..+++.|+++++.|.|||++||+++ ++...+|++++|. +|+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~-~G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFR-DGQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 5778899999997 5899999
Q ss_pred cCCCCC
Q 000517 1084 GPLGKH 1089 (1449)
Q Consensus 1084 G~~~~~ 1089 (1449)
|+..+.
T Consensus 223 ~~~~~~ 228 (501)
T PRK10762 223 REVADL 228 (501)
T ss_pred cCcCcC
Confidence 988653
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=324.83 Aligned_cols=204 Identities=23% Similarity=0.290 Sum_probs=169.7
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC---CCceEEEEcCCCc-cCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV---PPKTSAYISQNDL-HIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 260 (1449)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 4899999999999999999999999999999999999987 999999998875432 2457999999974 68889
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
|+++|+.|.....+.. . .+ ....++.+++.+||.+..|+.+++
T Consensus 100 ~v~~~~~~~~~~~~~~--~--------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~--- 142 (269)
T PRK13648 100 IVKYDVAFGLENHAVP--Y--------DE------------------------MHRRVSEALKQVDMLERADYEPNA--- 142 (269)
T ss_pred cHHHHHHhhHHhcCCC--H--------HH------------------------HHHHHHHHHHHcCCchhhhCCccc---
Confidence 9999998865432110 0 00 011245678999998877777665
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ +++.. +|+|++|++|
T Consensus 143 --LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~-~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 143 --LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL-SEAME-ADHVIVMNKG 218 (269)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc-hHHhc-CCEEEEEECC
Confidence 9999999999999999999999999999999999999999999998764467877776654 55654 9999999999
Q ss_pred eEEEecChhhHH
Q 000517 421 KIVYHGPQDHVL 432 (1449)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1449)
++++.|+++++.
T Consensus 219 ~i~~~g~~~~~~ 230 (269)
T PRK13648 219 TVYKEGTPTEIF 230 (269)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=322.03 Aligned_cols=213 Identities=22% Similarity=0.293 Sum_probs=173.3
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC--eeEEEEEEcCc
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG--YVEGEIKISGY 925 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~--~~~G~I~i~G~ 925 (1449)
.++++|+++.+ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQA--------------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEe--------------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 56777877653 135899999999999999999999999999999999986541 15799999998
Q ss_pred cCccccc-cceEEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc---cccccccCCCCC
Q 000517 926 PKVQETF-ARVSGYCEQTDI--HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA---IKDSLVGIPGVN 999 (1449)
Q Consensus 926 ~~~~~~~-~~~~gyv~Q~d~--~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~vg~~~~~ 999 (1449)
++..... ++.++|++|++. +.+..|+.+++.+.+.... .. ...+.++++++.++|.+ ..++.+ .
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~~-----~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KP--ADDATLTAALEAVGLENAARVLKLYP-----F 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CC--hHHHHHHHHHHHcCCCChhhhhhcCC-----c
Confidence 7643222 357999999974 4466899999876543221 11 12356889999999976 344443 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCc
Q 000517 1000 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGG 1078 (1449)
Q Consensus 1000 ~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG 1078 (1449)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +|
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~-~G 217 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMS-HG 217 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999998764 899999999986 4667899999997 58
Q ss_pred EEEEecCC
Q 000517 1079 RIIYCGPL 1086 (1449)
Q Consensus 1079 ~~v~~G~~ 1086 (1449)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (254)
T PRK10418 218 RIVEQGDV 225 (254)
T ss_pred EEEEecCH
Confidence 99999875
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=323.27 Aligned_cols=205 Identities=24% Similarity=0.359 Sum_probs=170.5
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC----------------CCceEE
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV----------------PPKTSA 248 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~----------------~~~~~~ 248 (1449)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 5899999999999999999999999999999999999987 999999998775321 145799
Q ss_pred EEcCCCccCCCCCHHHHHHHHHHc-cCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCC
Q 000517 249 YISQNDLHIAEMTVRETVDFSARC-QGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGL 327 (1449)
Q Consensus 249 yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL 327 (1449)
|++|++.+++.+||+||+.++... .+.. ..+ .+..++.+++.+|+
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl 136 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLVLGMA----------RAE------------------------AEKRAMELLDMVGL 136 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCC
Confidence 999999999999999999885321 1100 000 01124567889999
Q ss_pred CccccccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhH
Q 000517 328 DVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPET 407 (1449)
Q Consensus 328 ~~~~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~ 407 (1449)
++..++.+.+ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++. |..+++
T Consensus 137 ~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivs-H~~~~~ 210 (252)
T TIGR03005 137 ADKADHMPAQ-----LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVT-HEMGFA 210 (252)
T ss_pred hhHhhcChhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe-CCHHHH
Confidence 8777776654 9999999999999999999999999999999999999999999998764466766665 556678
Q ss_pred HhhcCeEEEEeCCeEEEecChhhHH
Q 000517 408 FDLFDDIILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 408 ~~~fD~v~lL~~G~iv~~G~~~~~~ 432 (1449)
.+++|++++|++|++++.|+.+++.
T Consensus 211 ~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 211 REFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHh
Confidence 8999999999999999999987764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=323.67 Aligned_cols=215 Identities=23% Similarity=0.281 Sum_probs=173.5
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 924 (1449)
.+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFY-------------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEE-------------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 35667776543 2346999999999999999999999999999999999976532 2479999999
Q ss_pred ccCc----cccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000517 925 YPKV----QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGIP 996 (1449)
Q Consensus 925 ~~~~----~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 996 (1449)
.+.. ....++.++|++|++.+++ .||.||+.+...... ........+.+.++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 142 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKSH---- 142 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhcC----
Confidence 8653 1234567999999998887 899999987643321 1112333456778888888753 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEec
Q 000517 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 997 ~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~ 1076 (1449)
...||||||||++|||+|+.+|+||+|||||+|||+.++..+++.|+++++ ++|||++||++. ++.+.+|++++|+
T Consensus 143 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~- 218 (249)
T PRK14253 143 -AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFL- 218 (249)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEE-
Confidence 347999999999999999999999999999999999999999999999875 689999999986 5778899999998
Q ss_pred CcEEEEecCC
Q 000517 1077 GGRIIYCGPL 1086 (1449)
Q Consensus 1077 gG~~v~~G~~ 1086 (1449)
+|+++..|+.
T Consensus 219 ~G~i~~~g~~ 228 (249)
T PRK14253 219 MGELVEHDDT 228 (249)
T ss_pred CCEEEEeCCH
Confidence 5899999875
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=321.17 Aligned_cols=206 Identities=23% Similarity=0.378 Sum_probs=168.2
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCeeeEEEECCccCCCC-----CCCceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS--LKVTGEVSYNGYKLEEF-----VPPKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1449)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ ...+|+|+++|+++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 4899999999999999999999999999999999999863 12389999999987542 1245799999998888
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC----ccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD----VCADT 333 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~dt 333 (1449)
+ +||+||+.+.....+.... .+ ....++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKDK---------KE------------------------LDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCCH---------HH------------------------HHHHHHHHHHHcCCCcchhhHhhC
Confidence 8 9999999987543221000 00 011245678899997 55666
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++ +|...++.+++|+
T Consensus 141 ~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiiv-sH~~~~~~~~~d~ 212 (247)
T TIGR00972 141 SALG-----LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIV-THNMQQAARISDR 212 (247)
T ss_pred Cccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEE-ecCHHHHHHhCCE
Confidence 6654 999999999999999999999999999999999999999999999865 3566665 4556688899999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000517 414 IILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~ 432 (1449)
+++|++|+++++|+.+++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=323.33 Aligned_cols=216 Identities=25% Similarity=0.317 Sum_probs=173.8
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCe---eEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY---VEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~---~~G~I~i~G 924 (1449)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 356667765442 3469999999999999999999999999999999999765422 379999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc----ccccccccC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----AIKDSLVGI 995 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 995 (1449)
.+... ..+++.++|++|++.+++.+|+.||+.+...... ....+...+.++++++.+++. +..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 146 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTPA-- 146 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCCc--
Confidence 87532 2345679999999999999999999987643321 112233345667777777764 2334443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|.
T Consensus 147 ---~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 147 ---TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999864 799999999986 5777899999997
Q ss_pred cCcEEEEecCC
Q 000517 1076 TGGRIIYCGPL 1086 (1449)
Q Consensus 1076 ~gG~~v~~G~~ 1086 (1449)
+|++++.|+.
T Consensus 222 -~G~i~~~~~~ 231 (252)
T PRK14272 222 -VGDLVEHGPT 231 (252)
T ss_pred -CCEEEEeCCH
Confidence 5899999875
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=338.62 Aligned_cols=195 Identities=25% Similarity=0.428 Sum_probs=169.4
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCC-------CCCceEEEEcCCCccCCCCC
Q 000517 189 HVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF-------VPPKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 261 (1449)
|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++||+|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999997 99999999886431 12467999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|+||+.|+.+.. .+..++.+++.+||++..++.+++
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~~~---- 128 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYPGS---- 128 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCccc----
Confidence 999998853200 001246688999999888888765
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++ +|...++..++|++++|++|+
T Consensus 129 -LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~v-THd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 129 -LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYV-SHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEE-ecCHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999876556676665 456678999999999999999
Q ss_pred EEEecChhhHH
Q 000517 422 IVYHGPQDHVL 432 (1449)
Q Consensus 422 iv~~G~~~~~~ 432 (1449)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999884
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=321.05 Aligned_cols=202 Identities=23% Similarity=0.424 Sum_probs=166.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCccCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 260 (1449)
.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (237)
T PRK11614 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95 (237)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC
Confidence 5899999999999999999999999999999999999987 9999999998765432 35699999999889999
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHh-CCCccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKIL-GLDVCADTMVGNAM 339 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~l-gL~~~~dt~vg~~~ 339 (1449)
||+||+.++..... .. + . +..++.+++.+ ++.+..++.+++
T Consensus 96 tv~~~l~~~~~~~~---~~---------~-------------~-----------~~~~~~~l~~~~~l~~~~~~~~~~-- 137 (237)
T PRK11614 96 TVEENLAMGGFFAE---RD---------Q-------------F-----------QERIKWVYELFPRLHERRIQRAGT-- 137 (237)
T ss_pred cHHHHHHHhhhccC---hh---------H-------------H-----------HHHHHHHHHHHHHHHHHHhCchhh--
Confidence 99999988542110 00 0 0 00123445555 465555555544
Q ss_pred cccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeC
Q 000517 340 RRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419 (1449)
Q Consensus 340 ~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~ 419 (1449)
||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++. |..+++.+.+|++++|++
T Consensus 138 ---LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~s-H~~~~~~~~~d~i~~l~~ 212 (237)
T PRK11614 138 ---MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVE-QNANQALKLADRGYVLEN 212 (237)
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CcHHHHHhhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999875 467777654 556788999999999999
Q ss_pred CeEEEecChhhHH
Q 000517 420 GKIVYHGPQDHVL 432 (1449)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1449)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (237)
T PRK11614 213 GHVVLEDTGDALL 225 (237)
T ss_pred CEEEeeCCHHHHh
Confidence 9999999988774
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=320.60 Aligned_cols=211 Identities=21% Similarity=0.360 Sum_probs=171.5
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCccCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 260 (1449)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 16 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 16 KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 5899999999999999999999999999999999999987 9999999988754322 34699999999999999
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
||+||+.++..... . ........... ..+..++.+++.+|+++..++.+++
T Consensus 93 tv~~nl~~~~~~~~-~-~~~~~~~~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 143 (242)
T TIGR03411 93 TVFENLELALPRDK-S-VFASLFFRLSA------------------------EEKDRIEEVLETIGLADEADRLAGL--- 143 (242)
T ss_pred CHHHHHHHhhhccc-c-cccccccccHH------------------------HHHHHHHHHHHHcCCchhhcCChhh---
Confidence 99999988643210 0 00000000000 0112356788999998888887766
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++. |..+++.++||+|++|++|
T Consensus 144 --LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~s-H~~~~~~~~~d~i~~l~~g 218 (242)
T TIGR03411 144 --LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVE-HDMEFVRSIADKVTVLHQG 218 (242)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEE-CCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999864 46766655 5567888999999999999
Q ss_pred eEEEecChhhHH
Q 000517 421 KIVYHGPQDHVL 432 (1449)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1449)
+++++|+.+++.
T Consensus 219 ~~~~~~~~~~~~ 230 (242)
T TIGR03411 219 SVLAEGSLDQVQ 230 (242)
T ss_pred eEEeeCCHHHHh
Confidence 999999887753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=325.06 Aligned_cols=214 Identities=25% Similarity=0.337 Sum_probs=172.6
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCC---CeeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTS---GYVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~I~i~G 924 (1449)
.+.++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 467778776542 24599999999999999999999999999999999997542 13589999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGI 995 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 995 (1449)
.+... ...++.++|++|++.+++. ||.||+.+....+. ... ..++.++++++.++|.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87531 2356789999999887775 99999988654432 112 33456889999999853 33443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
+..||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+...+|+++++.
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 347999999999999999999999999999999999999999999999976 489999999986 5667899976443
Q ss_pred cCcEEEEecCC
Q 000517 1076 TGGRIIYCGPL 1086 (1449)
Q Consensus 1076 ~gG~~v~~G~~ 1086 (1449)
++|+++..|+.
T Consensus 254 ~~G~i~~~g~~ 264 (285)
T PRK14254 254 TGGELVEFDDT 264 (285)
T ss_pred eCCEEEEeCCH
Confidence 36899999875
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=325.73 Aligned_cols=205 Identities=23% Similarity=0.321 Sum_probs=167.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC-------CCceEEEEcCCCc-
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV-------PPKTSAYISQNDL- 255 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~- 255 (1449)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35899999999999999999999999999999999999997 999999998875421 1356899999862
Q ss_pred cCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC-cccccc
Q 000517 256 HIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD-VCADTM 334 (1449)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 334 (1449)
.+...||+||+.+.....+.. ..+ ....++.+++.+||. ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~ 142 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVS----------QEE------------------------AEALAREKLALVGISESLFEKN 142 (280)
T ss_pred hhccccHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCChhhhhCC
Confidence 333479999998865432110 000 011245678889997 356666
Q ss_pred ccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeE
Q 000517 335 VGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDI 414 (1449)
Q Consensus 335 vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v 414 (1449)
+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .++|+|++.| ..+++.+++|++
T Consensus 143 ~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH-~~~~~~~~~d~i 215 (280)
T PRK13649 143 PFE-----LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTH-LMDDVANYADFV 215 (280)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEec-cHHHHHHhCCEE
Confidence 655 999999999999999999999999999999999999999999999875 4667776654 456788899999
Q ss_pred EEEeCCeEEEecChhhHH
Q 000517 415 ILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1449)
++|++|++++.|+.+++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=323.07 Aligned_cols=214 Identities=25% Similarity=0.356 Sum_probs=173.8
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISGY 925 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G~ 925 (1449)
++++|+++.+. ++.+|+|+||++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 56777765442 346999999999999999999999999999999999975421 25899999998
Q ss_pred cCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccc----ccccccCC
Q 000517 926 PKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI----KDSLVGIP 996 (1449)
Q Consensus 926 ~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~~ 996 (1449)
+... ...++.++|++|++.+++ .|++||+.+...... ....+..++.+++.++.+++.+. .+..
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 143 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKP---- 143 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCC----
Confidence 7532 234567999999998877 899999988654321 11223344567888999998542 3333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEec
Q 000517 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 997 ~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~ 1076 (1449)
..+||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||++||+++ .+.+.+|++++|.
T Consensus 144 -~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~- 219 (250)
T PRK14262 144 -GTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMY- 219 (250)
T ss_pred -hhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 347999999999999999999999999999999999999999999999865 799999999986 4778899999998
Q ss_pred CcEEEEecCC
Q 000517 1077 GGRIIYCGPL 1086 (1449)
Q Consensus 1077 gG~~v~~G~~ 1086 (1449)
+|+++..|+.
T Consensus 220 ~G~i~~~g~~ 229 (250)
T PRK14262 220 RGELIEYGPT 229 (250)
T ss_pred CCEEEEecCH
Confidence 5899999875
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=358.04 Aligned_cols=218 Identities=24% Similarity=0.317 Sum_probs=181.3
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
++++|+++++ +++.+|+|+||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 6 l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~ 70 (510)
T PRK09700 6 ISMAGIGKSF-------------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINYN 70 (510)
T ss_pred EEEeeeEEEc-------------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEECC
Confidence 6677777654 234699999999999999999999999999999999998654 5899999998753
Q ss_pred cc----cccceEEEEccCCCCCCCCCHHHHHHHHHHhc----cCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000517 929 QE----TFARVSGYCEQTDIHSPNITVEESVIFSAWLR----LAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNG 1000 (1449)
Q Consensus 929 ~~----~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1000 (1449)
.. ..++.+||++|++.+++.+||+||+.++.... ........+..+.++++++.+||.+..++.++ +
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 145 (510)
T PRK09700 71 KLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA-----N 145 (510)
T ss_pred CCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----h
Confidence 21 12356999999998899999999998753211 00001223345678899999999888787764 7
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEE
Q 000517 1001 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080 (1449)
Q Consensus 1001 LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~ 1080 (1449)
|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++|. +|++
T Consensus 146 LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~-~G~i 223 (510)
T PRK09700 146 LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMK-DGSS 223 (510)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEE
Confidence 9999999999999999999999999999999999999999999999878999999999976 4677899999998 5899
Q ss_pred EEecCCCC
Q 000517 1081 IYCGPLGK 1088 (1449)
Q Consensus 1081 v~~G~~~~ 1088 (1449)
++.|+..+
T Consensus 224 ~~~g~~~~ 231 (510)
T PRK09700 224 VCSGMVSD 231 (510)
T ss_pred eeecchhh
Confidence 99998764
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=325.65 Aligned_cols=205 Identities=26% Similarity=0.391 Sum_probs=170.9
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC---CCceEEEEcCCCc-cCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV---PPKTSAYISQNDL-HIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 260 (1449)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4899999999999999999999999999999999999997 999999998875422 1356899999863 34568
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
||+||+.+.....+... .+ .+..++.+++.+||.+..++.+++
T Consensus 95 tv~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~--- 137 (277)
T PRK13652 95 TVEQDIAFGPINLGLDE----------ET------------------------VAHRVSSALHMLGLEELRDRVPHH--- 137 (277)
T ss_pred cHHHHHHhHHHHcCCCH----------HH------------------------HHHHHHHHHHHCCChhHhcCCccc---
Confidence 99999987654321100 00 011346789999998888888765
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++. |..+++.+.||+|++|++|
T Consensus 138 --LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~t-H~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 138 --LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFST-HQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999998764466776655 5566888999999999999
Q ss_pred eEEEecChhhHH
Q 000517 421 KIVYHGPQDHVL 432 (1449)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1449)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998875
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=323.67 Aligned_cols=215 Identities=24% Similarity=0.341 Sum_probs=175.2
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 924 (1449)
.++++|+++.+. ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 25 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 477888877542 235999999999999999999999999999999999975421 3589999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGI 995 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 995 (1449)
.+... ..+++.++|++|++.+++. |++||+.+...... .......++.++++++.+++.+ ..+..
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 165 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHEN--- 165 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCC---
Confidence 87532 2346789999999888875 99999987654321 1112233456788899998853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|.
T Consensus 166 --~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 241 (272)
T PRK14236 166 --AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMY 241 (272)
T ss_pred --cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999975 799999999986 4677899999998
Q ss_pred cCcEEEEecCC
Q 000517 1076 TGGRIIYCGPL 1086 (1449)
Q Consensus 1076 ~gG~~v~~G~~ 1086 (1449)
+|+++..|+.
T Consensus 242 -~G~i~~~g~~ 251 (272)
T PRK14236 242 -MGKLVEYGDT 251 (272)
T ss_pred -CCEEEecCCH
Confidence 5899999875
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=315.70 Aligned_cols=194 Identities=26% Similarity=0.423 Sum_probs=162.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC------CCceEEEEcCCCccC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV------PPKTSAYISQNDLHI 257 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1449)
..+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 35899999999999999999999999999999999999987 999999999876432 135799999999889
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGN 337 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 337 (1449)
+.+||+||+.++....+... .+ .+..++++++.+||++..++.+.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 137 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKKE----------RE------------------------IQRRVGAALRQVGLEHKADAFPEQ 137 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCChhhhhCChhh
Confidence 99999999998754322100 00 011246688999998777777765
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL 417 (1449)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .++|++++. |..+++.++||++++|
T Consensus 138 -----LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~t-H~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 138 -----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVAT-HDLSLVDRVAHRVIIL 210 (214)
T ss_pred -----CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEe-CCHHHHHHhcCEEEEe
Confidence 999999999999999999999999999999999999999999999865 467766665 5567888899999999
Q ss_pred eCCe
Q 000517 418 AEGK 421 (1449)
Q Consensus 418 ~~G~ 421 (1449)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=319.94 Aligned_cols=200 Identities=23% Similarity=0.391 Sum_probs=166.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC---CCceEEEEcCCCccCCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV---PPKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 261 (1449)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 4899999999999999999999999999999999999987 999999998875432 2457999999987776 69
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC-cccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD-VCADTMVGNAMR 340 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg~~~~ 340 (1449)
|+||+.+.....+ . ....++.+++.+||+ +..++.+.+
T Consensus 93 v~e~l~~~~~~~~---~-----------------------------------~~~~~~~~l~~~~l~~~~~~~~~~~--- 131 (241)
T PRK14250 93 VKDNIEYGPMLKG---E-----------------------------------KNVDVEYYLSIVGLNKEYATRDVKN--- 131 (241)
T ss_pred HHHHHhcchhhcC---c-----------------------------------HHHHHHHHHHHcCCCHHHhhCCccc---
Confidence 9999987532110 0 001235578889996 456666554
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++. |+.+++.+++|+|++|++|
T Consensus 132 --LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~s-H~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 132 --LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWIT-HNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe-ccHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999998764467766654 5566788999999999999
Q ss_pred eEEEecChhhHH
Q 000517 421 KIVYHGPQDHVL 432 (1449)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1449)
+++..|+++++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=316.99 Aligned_cols=205 Identities=26% Similarity=0.391 Sum_probs=173.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC-CCceEEEEcCCCccCCCCCHH
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV-PPKTSAYISQNDLHIAEMTVR 263 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~ 263 (1449)
++|+|+|+.++||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.+.. .++.++|++|++..++.+||+
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 5999999999999999999999999999999999999997 899999999876432 246799999999888899999
Q ss_pred HHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccC
Q 000517 264 ETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343 (1449)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGl 343 (1449)
||+.+.....+... . . .....+.+++.+||++..++.+.+ |
T Consensus 91 ~nl~~~~~~~~~~~--~--------~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----l 131 (232)
T cd03300 91 ENIAFGLRLKKLPK--A--------E------------------------IKERVAEALDLVQLEGYANRKPSQ-----L 131 (232)
T ss_pred HHHHHHHHhcCCCH--H--------H------------------------HHHHHHHHHHHcCCchhhcCChhh-----C
Confidence 99988654332100 0 0 011346688999998878877755 9
Q ss_pred ChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEE
Q 000517 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423 (1449)
Q Consensus 344 SGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv 423 (1449)
|||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.+..+.|++++.|+ ..++.+++|++++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~-~~~~~~~~d~i~~l~~G~~~ 210 (232)
T cd03300 132 SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHD-QEEALTMSDRIAVMNKGKIQ 210 (232)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999876446787777655 56788999999999999999
Q ss_pred EecChhhHH
Q 000517 424 YHGPQDHVL 432 (1449)
Q Consensus 424 ~~G~~~~~~ 432 (1449)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (232)
T cd03300 211 QIGTPEEIY 219 (232)
T ss_pred ecCCHHHHH
Confidence 999877664
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=321.62 Aligned_cols=220 Identities=21% Similarity=0.279 Sum_probs=172.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCccCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 260 (1449)
++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.+
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (255)
T PRK11300 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREM 95 (255)
T ss_pred EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCC
Confidence 5899999999999999999999999999999999999997 9999999998764321 23589999999999999
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
||+||+.++........ ........ ... ....+ +....++.+++.+||.+..++.+++
T Consensus 96 tv~enl~~~~~~~~~~~---~~~~~~~~---~~~--~~~~~-----------~~~~~~~~~l~~~gl~~~~~~~~~~--- 153 (255)
T PRK11300 96 TVIENLLVAQHQQLKTG---LFSGLLKT---PAF--RRAES-----------EALDRAATWLERVGLLEHANRQAGN--- 153 (255)
T ss_pred cHHHHHHHhhhccccch---hhhhhccc---ccc--ccchh-----------HHHHHHHHHHHhCChhhhhhCChhh---
Confidence 99999998643110000 00000000 000 00000 0112346678899998877887766
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++. |..+++.+++|++++|++|
T Consensus 154 --LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~s-H~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 154 --LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIE-HDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe-CCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999998764466766655 5567888999999999999
Q ss_pred eEEEecChhhHH
Q 000517 421 KIVYHGPQDHVL 432 (1449)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1449)
++++.|+.+++.
T Consensus 231 ~i~~~~~~~~~~ 242 (255)
T PRK11300 231 TPLANGTPEEIR 242 (255)
T ss_pred eEEecCCHHHHh
Confidence 999999987763
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=318.97 Aligned_cols=204 Identities=23% Similarity=0.279 Sum_probs=167.2
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC----CCCeeeEEEECCccCCCCCC-CceEEEEcCCCc--cCC
Q 000517 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDP----SLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDL--HIA 258 (1449)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~----~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~ 258 (1449)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 58999999999999999999999999999999999988 6 9999999988754322 257999999974 557
Q ss_pred CCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC---ccccccc
Q 000517 259 EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD---VCADTMV 335 (1449)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~---~~~dt~v 335 (1449)
.+|+.|++.+.....+... . .....++.+++.+||+ +..++.+
T Consensus 78 ~~t~~~~~~~~~~~~~~~~---------~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~ 123 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLS---------K-------------------------QARALILEALEAVGLPDPEEVLKKYP 123 (230)
T ss_pred ccCHHHHHHHHHHHcCccH---------H-------------------------HHHHHHHHHHHHcCCCchHHHHhCCh
Confidence 7899999987643221100 0 0011246688999997 3456665
Q ss_pred cccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEE
Q 000517 336 GNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415 (1449)
Q Consensus 336 g~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~ 415 (1449)
++ |||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++++..++|+|++. |..+++..++|+++
T Consensus 124 ~~-----LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s-H~~~~~~~~~d~i~ 197 (230)
T TIGR02770 124 FQ-----LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLIT-HDLGVVARIADEVA 197 (230)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEE
Confidence 54 9999999999999999999999999999999999999999999998764466766655 55668889999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000517 416 LMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1449)
+|++|+++..|+.+++.
T Consensus 198 ~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 198 VMDDGRIVERGTVKEIF 214 (230)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988774
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=323.69 Aligned_cols=215 Identities=25% Similarity=0.332 Sum_probs=173.9
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc-
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP- 926 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~- 926 (1449)
.+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccc
Confidence 366777776542 24599999999999999999999999999999999998655 58999999986
Q ss_pred ----Ccc---cc----ccceEEEEccCCC--CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-ccccc
Q 000517 927 ----KVQ---ET----FARVSGYCEQTDI--HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-IKDSL 992 (1449)
Q Consensus 927 ----~~~---~~----~~~~~gyv~Q~d~--~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ 992 (1449)
+.. .. .++.++|++|++. +.+.+|+.||+.+...... ........+.+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 432 11 2456999999973 5677899999976432211 1112234556789999999964 55555
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeE
Q 000517 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDEL 1071 (1449)
Q Consensus 993 vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~ 1071 (1449)
+ ..||||||||++|||+|+.+|+||+|||||+|||+.+...+++.|++++++ |.|||+++|++. .+...+|++
T Consensus 149 ~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 P-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred C-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4 479999999999999999999999999999999999999999999998764 899999999976 466689999
Q ss_pred EEEecCcEEEEecCC
Q 000517 1072 ILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1072 ~~l~~gG~~v~~G~~ 1086 (1449)
++|. +|++++.|+.
T Consensus 223 ~~l~-~g~i~~~~~~ 236 (258)
T PRK11701 223 LVMK-QGRVVESGLT 236 (258)
T ss_pred EEEE-CCEEEEeCCH
Confidence 9997 5899999875
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=332.19 Aligned_cols=208 Identities=22% Similarity=0.290 Sum_probs=173.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC------CCceEEEEcCCC--c
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV------PPKTSAYISQND--L 255 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d--~ 255 (1449)
..+|+|||++|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 46999999999999999999999999999999999999987 999999999876542 245799999997 5
Q ss_pred cCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC-cccccc
Q 000517 256 HIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD-VCADTM 334 (1449)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 334 (1449)
+.+.+||.+++........... +++ ....+.++++.+||+ ...++.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~---------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLS---------AAE------------------------RREKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCC---------HHH------------------------HHHHHHHHHHHCCCChHHhcCC
Confidence 8899999999987654321000 000 012356789999996 456777
Q ss_pred ccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeE
Q 000517 335 VGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDI 414 (1449)
Q Consensus 335 vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v 414 (1449)
+++ |||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+..+.|+|+ ++|+...+.+++|+|
T Consensus 152 p~~-----LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~-iTHdl~~~~~~adrv 225 (327)
T PRK11308 152 PHM-----FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVF-ISHDLSVVEHIADEV 225 (327)
T ss_pred Ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEE-EeCCHHHHHHhCCEE
Confidence 655 99999999999999999999999999999999999999999999987755666555 567788888999999
Q ss_pred EEEeCCeEEEecChhhHHH
Q 000517 415 ILMAEGKIVYHGPQDHVLA 433 (1449)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1449)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999988853
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=325.86 Aligned_cols=215 Identities=23% Similarity=0.318 Sum_probs=172.9
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCC--C-CeeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT--S-GYVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i~G 924 (1449)
.+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 367777776542 2469999999999999999999999999999999999642 1 13589999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGI 995 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 995 (1449)
.+... ..+++.++|++|++.+++. |++||+.+...... .......++.+.+.++.+++.+ ..++.+
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 162 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSSA-- 162 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc--
Confidence 87532 1345679999999888875 99999987643221 1112233456778888888852 334433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.
T Consensus 163 ---~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 163 ---LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred ---ccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999865 689999999986 4778899999997
Q ss_pred cCcEEEEecCC
Q 000517 1076 TGGRIIYCGPL 1086 (1449)
Q Consensus 1076 ~gG~~v~~G~~ 1086 (1449)
+|++++.|+.
T Consensus 238 -~G~i~~~~~~ 247 (268)
T PRK14248 238 -NGDLVEYDQT 247 (268)
T ss_pred -CCEEEEeCCH
Confidence 5899999875
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=316.09 Aligned_cols=195 Identities=27% Similarity=0.452 Sum_probs=167.0
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc------ccccceEEEEccCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ------ETFARVSGYCEQTDIHSP 947 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~~~~~~gyv~Q~d~~~~ 947 (1449)
+.+|+|+||++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 5699999999999999999999999999999999997654 58999999987532 134578999999999888
Q ss_pred CCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000517 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1027 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEP 1027 (1449)
.+|+.||+.+...... ....++..+.++++++.++|.+..++.+ ..||+|||||++|||+|+.+|++|+||||
T Consensus 96 ~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 96 FLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8999999998654321 1233444567899999999987777764 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcEE
Q 000517 1028 TTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080 (1449)
Q Consensus 1028 TsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~ 1080 (1449)
|+|||+.++..+.+.|+++.+ .|+|||+++|+++ +.+.+|++++|. +|++
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~-~g~~ 219 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHME-DGKL 219 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEE-CCEE
Confidence 999999999999999999876 4899999999975 457899999997 4665
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=328.50 Aligned_cols=235 Identities=26% Similarity=0.420 Sum_probs=192.5
Q ss_pred hcCCCCCCceEEEeeeEEEEEeeecCCCCCCCchhhhhhhhhccccccCccccccccccccceeeEEeCCeEEEEEcCCC
Q 000517 128 KVGIKLPTIEVRYKNLCVEAKCEVVHGKPLPTLWNSFKGMISVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPG 207 (1449)
Q Consensus 128 ~~g~~~p~v~v~~~~L~v~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~G 207 (1449)
++.++-|+=.+..|++++ + +. ..++++|+|+||.+.+|+-++|+||||
T Consensus 325 ~m~LP~P~g~L~Ve~l~~---~-PP----------------------------g~~~pil~~isF~l~~G~~lgIIGPSg 372 (580)
T COG4618 325 RMPLPAPQGALSVERLTA---A-PP----------------------------GQKKPILKGISFALQAGEALGIIGPSG 372 (580)
T ss_pred CCCCCCCCceeeEeeeee---c-CC----------------------------CCCCcceecceeEecCCceEEEECCCC
Confidence 566666777888888875 2 11 123579999999999999999999999
Q ss_pred CcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCCCHHHHHHHHHHccCCCCchhhhhH
Q 000517 208 CGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMME 284 (1449)
Q Consensus 208 sGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 284 (1449)
||||||.++|.|-.+|. +|.|.+||.+++..++ .+.+||.||+-.+|+ -||.|||. |+.
T Consensus 373 SGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa---Rf~----------- 434 (580)
T COG4618 373 SGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA---RFG----------- 434 (580)
T ss_pred ccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH---hcc-----------
Confidence 99999999999999997 9999999999887764 478999999766665 69999994 221
Q ss_pred hcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCChhhhhhHHHHHHHhCCCcEE
Q 000517 285 VSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKAL 364 (1449)
Q Consensus 285 ~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vl 364 (1449)
++.|.++..+++...+.. |- ++.|++.+||.||+. ..+||||||||+++||||+++|.++
T Consensus 435 -----------~~~d~~kIieAA~lAgvH-----el---Il~lP~GYdT~iG~~-G~~LSgGQRQRIaLARAlYG~P~lv 494 (580)
T COG4618 435 -----------EEADPEKVIEAARLAGVH-----EL---ILRLPQGYDTRIGEG-GATLSGGQRQRIALARALYGDPFLV 494 (580)
T ss_pred -----------ccCCHHHHHHHHHHcChH-----HH---HHhCcCCccCccCCC-CCCCCchHHHHHHHHHHHcCCCcEE
Confidence 133444444444443322 22 345999999999985 5679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEEEecChhhHHHHH
Q 000517 365 FMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLAFF 435 (1449)
Q Consensus 365 lLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv~~G~~~~~~~~F 435 (1449)
+||||-|+||+.....+.+.|.++.. .|.|+|+..|. |.+...+|+|++|++|++-.+|+++|++...
T Consensus 495 VLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHR--Ps~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 495 VLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHR--PSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred EecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecC--HHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 99999999999999999999999754 57777776554 5688999999999999999999999998754
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=332.25 Aligned_cols=214 Identities=20% Similarity=0.258 Sum_probs=171.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-------CceEEEEcCCC--
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-------PKTSAYISQND-- 254 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d-- 254 (1449)
..+|+|||++|++||+++|+|+||||||||+++|+|.++|+...+|+|.++|.++..... ++.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 459999999999999999999999999999999999998842248999999998765432 24799999997
Q ss_pred ccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccc
Q 000517 255 LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTM 334 (1449)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 334 (1449)
.+.+.+||.+++.+......... ..+ ....+.++++.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~---------~~~------------------------~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMS---------KAE------------------------AFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCC---------HHH------------------------HHHHHHHHHHHcCCCChHHH-
Confidence 68899999999987654321100 000 01134567888999753322
Q ss_pred ccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeE
Q 000517 335 VGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDI 414 (1449)
Q Consensus 335 vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v 414 (1449)
. +.....|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+..+.|+++ ++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~-iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIM-ITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEE-EECCHHHHHHhCCEE
Confidence 1 22345699999999999999999999999999999999999999999999997755566555 556677888899999
Q ss_pred EEEeCCeEEEecChhhHHH
Q 000517 415 ILMAEGKIVYHGPQDHVLA 433 (1449)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~~ 433 (1449)
++|++|+|++.|+.+++.+
T Consensus 233 ~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999988853
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=325.42 Aligned_cols=219 Identities=24% Similarity=0.409 Sum_probs=174.1
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|++++++ +++.+|+|+|++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEh
Confidence 467777776542 124699999999999999999999999999999999998665 589999999875
Q ss_pred ccccccceEEEEccCCCCC--CCCCHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000517 928 VQETFARVSGYCEQTDIHS--PNITVEESVIFSAWLRL-APEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTE 1004 (1449)
Q Consensus 928 ~~~~~~~~~gyv~Q~d~~~--~~lTv~e~l~f~~~lr~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1004 (1449)
.....++.++|++|++.+. ...+++|++.++..... .........++.++++++.+||.+..++.++ .||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 4322234699999997642 23578998865321000 0011122334567889999999888777754 69999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1005 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1005 qrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++ +|++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~--~G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV--KGTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE--CCEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 567889998666 48999999
Q ss_pred CCCC
Q 000517 1085 PLGK 1088 (1449)
Q Consensus 1085 ~~~~ 1088 (1449)
+..+
T Consensus 224 ~~~~ 227 (272)
T PRK15056 224 PTET 227 (272)
T ss_pred CHHh
Confidence 8753
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=322.89 Aligned_cols=206 Identities=21% Similarity=0.276 Sum_probs=169.3
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCccCcc-----ccccceEEEEccCCC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISGYPKVQ-----ETFARVSGYCEQTDI 944 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G~~~~~-----~~~~~~~gyv~Q~d~ 944 (1449)
+..+|+|+|+++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 20 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 99 (261)
T PRK14263 20 NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99 (261)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc
Confidence 456999999999999999999999999999999999976531 258999999987532 234567999999988
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000517 945 HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 1024 (1449)
Q Consensus 945 ~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illL 1024 (1449)
++ .+|+.||+.+....+. . .....+.++++++.++|.+..+...+. ..+.||||||||++|||||+.+|++|+|
T Consensus 100 ~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~~~LS~G~~qrv~laral~~~p~llll 173 (261)
T PRK14263 100 PF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKV-SGLSLSGGQQQRLCIARAIATEPEVLLL 173 (261)
T ss_pred cc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhC-CcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 76 5999999988754432 1 123345788899999986433222221 2357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe-------cCcEEEEecCC
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK-------TGGRIIYCGPL 1086 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~-------~gG~~v~~G~~ 1086 (1449)
||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|. ++|+++..|+.
T Consensus 174 DEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 174 DEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred eCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 99999999999999999999985 4799999999986 4778899999996 46999999985
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=331.50 Aligned_cols=210 Identities=22% Similarity=0.279 Sum_probs=170.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC-CeeeEEEECCccCCCCCC-------CceEEEEcCCC-
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL-KVTGEVSYNGYKLEEFVP-------PKTSAYISQND- 254 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 254 (1449)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++.. ..+|+|.++|.++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 469999999999999999999999999999999999987521 138999999998765432 23699999997
Q ss_pred -ccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc---c
Q 000517 255 -LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV---C 330 (1449)
Q Consensus 255 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~---~ 330 (1449)
.+.|.+||.+++........... +++ ....++++|+.+||++ .
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~---------~~~------------------------~~~~~~~~L~~~gL~~~~~~ 146 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGN---------KKT------------------------RRQRAIDLLNQVGIPDPASR 146 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCC---------HHH------------------------HHHHHHHHHHHCCCCChHHH
Confidence 47899999999876544321000 000 1123567899999974 3
Q ss_pred ccccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhh
Q 000517 331 ADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL 410 (1449)
Q Consensus 331 ~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~ 410 (1449)
.+..++ .|||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++.+..+.|+|+ ++|+...+.++
T Consensus 147 l~~~p~-----~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~-iTHdl~~~~~~ 220 (326)
T PRK11022 147 LDVYPH-----QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVL-ITHDLALVAEA 220 (326)
T ss_pred HhCCch-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHHh
Confidence 455554 499999999999999999999999999999999999999999999997755666655 45667788899
Q ss_pred cCeEEEEeCCeEEEecChhhHH
Q 000517 411 FDDIILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 411 fD~v~lL~~G~iv~~G~~~~~~ 432 (1449)
+|+|++|.+|++++.|+.+++.
T Consensus 221 adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 221 AHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred CCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999998875
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=314.09 Aligned_cols=187 Identities=24% Similarity=0.305 Sum_probs=157.7
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc--ccccceEEEEccCCCCCCCCCH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ--ETFARVSGYCEQTDIHSPNITV 951 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 951 (1449)
+.+|+|+|++|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++.+|+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 91 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTA 91 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcH
Confidence 4699999999999999999999999999999999998665 58999999987532 2345678999999988899999
Q ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000517 952 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031 (1449)
Q Consensus 952 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgL 1031 (1449)
.||+.+....+. . ..++.++++++.+||.+..++.+ ..||||||||++||++|+.+|++++|||||+||
T Consensus 92 ~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 160 (204)
T PRK13538 92 LENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALARLWLTRAPLWILDEPFTAI 160 (204)
T ss_pred HHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 999988654321 1 22356789999999987777764 379999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEE
Q 000517 1032 DARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILL 1074 (1449)
Q Consensus 1032 D~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l 1074 (1449)
|+.+...+++.|++++++|+|||++||+++ .+..+-++++++
T Consensus 161 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 161 DKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 999999999999998777899999999976 344443455444
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=317.63 Aligned_cols=202 Identities=27% Similarity=0.376 Sum_probs=166.5
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCCccCCCCCHHHHH
Q 000517 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRETV 266 (1449)
Q Consensus 187 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 266 (1449)
|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 58999999999999999999999999999999999987 9999999998765322 248999999999999999999
Q ss_pred HHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCChh
Q 000517 267 DFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGG 346 (1449)
Q Consensus 267 ~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlSGG 346 (1449)
.+......... ...+ ....++.+++.+||++..++.+++ ||||
T Consensus 76 ~~~~~~~~~~~--------~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPDL--------SKSE------------------------RRAIVEEHIALVGLTEAADKRPGQ-----LSGG 118 (230)
T ss_pred HHHHHhcccCC--------CHHH------------------------HHHHHHHHHHHcCCHHHHcCChhh-----CCHH
Confidence 88632100000 0000 011245678999998878887765 9999
Q ss_pred hhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEEEec
Q 000517 347 QKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHG 426 (1449)
Q Consensus 347 qrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv~~G 426 (1449)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++. |..+++.+++|+|++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~s-H~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVT-HDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhcCEEEEEeCCcEeccc
Confidence 999999999999999999999999999999999999999998765566776665 5566888999999999999999988
Q ss_pred ChhhH
Q 000517 427 PQDHV 431 (1449)
Q Consensus 427 ~~~~~ 431 (1449)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=322.88 Aligned_cols=204 Identities=28% Similarity=0.406 Sum_probs=168.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC-----CCceEEEEcCCCc-cCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV-----PPKTSAYISQNDL-HIA 258 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~~ 258 (1449)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 5899999999999999999999999999999999999997 999999999874211 1356999999864 345
Q ss_pred CCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 259 EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
..|+.||+.+.....+... .+ ....++.+++.+||.+..++.+++
T Consensus 92 ~~~~~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~- 136 (271)
T PRK13638 92 YTDIDSDIAFSLRNLGVPE----------AE------------------------ITRRVDEALTLVDAQHFRHQPIQC- 136 (271)
T ss_pred cccHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCHhHhcCCchh-
Confidence 6789999988654321100 00 011245678899998877887765
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+.|+|++ +|...++.+++|++++|+
T Consensus 137 ----LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~v-tH~~~~~~~~~d~i~~l~ 210 (271)
T PRK13638 137 ----LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIIS-SHDIDLIYEISDAVYVLR 210 (271)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999875 46676665 466678889999999999
Q ss_pred CCeEEEecChhhHH
Q 000517 419 EGKIVYHGPQDHVL 432 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1449)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~g~~~~~~ 224 (271)
T PRK13638 211 QGQILTHGAPGEVF 224 (271)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988764
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=314.91 Aligned_cols=201 Identities=23% Similarity=0.308 Sum_probs=170.3
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|++.++ +++.+|+++|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSR-------------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEec-------------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 36677776543 224599999999999999999999999999999999998665 489999999876
Q ss_pred ccccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000517 928 VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRK 1007 (1449)
Q Consensus 928 ~~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 1007 (1449)
.....++.++|++|++.+++.+|+.||+.+....+. ....+.++++++.++|.+..++.++ .|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG------RRAKQMPGSALAIVGLAGYEDTLVR-----QLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC------CcHHHHHHHHHHHcCChhhccCChh-----hCCHHHHH
Confidence 433345568999999988888999999988654321 1123456788999999887777654 79999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 1008 RLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 1008 Rl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
|++||++++.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999998888999999999986 5788999999885
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=314.51 Aligned_cols=210 Identities=25% Similarity=0.351 Sum_probs=173.7
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCC-C-C-eeEEEEEEcCccCc---cc---c-ccceEEEEccC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT-S-G-YVEGEIKISGYPKV---QE---T-FARVSGYCEQT 942 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~-~-~-~~~G~I~i~G~~~~---~~---~-~~~~~gyv~Q~ 942 (1449)
..++++||||++++||++||+|.|||||||+.++|.|... + + ..+|+|.++|.++. .+ . +.+.++|++|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 3579999999999999999999999999999999999765 2 2 45789999998642 22 2 23579999999
Q ss_pred C--CCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000517 943 D--IHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPS 1020 (1449)
Q Consensus 943 d--~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~ 1020 (1449)
+ .+.|.+||.+.+.-......... .+++..+++.++|+.+||.+-....-. .+.+|||||||||.||.||+.+|+
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~--YPhelSGGMrQRV~IAmala~~P~ 173 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKS--YPHELSGGMRQRVMIAMALALNPK 173 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhh--CCcccCCcHHHHHHHHHHHhCCCC
Confidence 6 46789999888766544322111 345567788999999999864322211 245899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1021 IIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1021 illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
+||.||||++||...+.+|+++|+++.+ .|.|+|++|||.. -+.+.+|++.+|. .|++|+.|+..
T Consensus 174 LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY-aG~iVE~g~~~ 239 (316)
T COG0444 174 LLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY-AGRIVEEGPVE 239 (316)
T ss_pred EEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE-CcEEEEeCCHH
Confidence 9999999999999999999999999986 6999999999987 4889999999998 59999999974
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=325.42 Aligned_cols=208 Identities=25% Similarity=0.349 Sum_probs=170.7
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC---CCceEEEEcCCCc-cCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV---PPKTSAYISQNDL-HIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 260 (1449)
++|+|+|++|++|++++|+||||||||||+++|+|.++|+...+|+|+++|.++.... .++.++|++|++. .++.+
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 5899999999999999999999999999999999999886212399999999875432 2357999999974 67789
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
||+||+.|..+..+.. ..+ ....++.+++.+||.+..++.+.+
T Consensus 101 tv~enl~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~~--- 143 (282)
T PRK13640 101 TVGDDVAFGLENRAVP----------RPE------------------------MIKIVRDVLADVGMLDYIDSEPAN--- 143 (282)
T ss_pred CHHHHHHhhHHhCCCC----------HHH------------------------HHHHHHHHHHHCCChhHhcCCccc---
Confidence 9999998864332110 000 011346678999998877877765
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ +++ ..||++++|++|
T Consensus 144 --LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~-~~~d~i~~l~~G 219 (282)
T PRK13640 144 --LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDI-DEA-NMADQVLVLDDG 219 (282)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999998765567877776654 455 579999999999
Q ss_pred eEEEecChhhHHH
Q 000517 421 KIVYHGPQDHVLA 433 (1449)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1449)
++++.|+++++.+
T Consensus 220 ~i~~~g~~~~~~~ 232 (282)
T PRK13640 220 KLLAQGSPVEIFS 232 (282)
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988753
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=318.29 Aligned_cols=197 Identities=27% Similarity=0.377 Sum_probs=164.1
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-------CceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-------PKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~~ 257 (1449)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 5899999999999999999999999999999999999987 9999999998765322 24699999999889
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGN 337 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 337 (1449)
+.+||+||+.+.....+.. . .+ ....++.+++.+||.+..++.+++
T Consensus 101 ~~~tv~~~l~~~~~~~~~~-~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 146 (228)
T PRK10584 101 PTLNALENVELPALLRGES-S---------RQ------------------------SRNGAKALLEQLGLGKRLDHLPAQ 146 (228)
T ss_pred CCcCHHHHHHHHHHhcCCC-H---------HH------------------------HHHHHHHHHHHcCCHhHhhCChhh
Confidence 9999999998865332110 0 00 011346678999998877777765
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL 417 (1449)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.|++ +++ +.+|++++|
T Consensus 147 -----LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~-~~~d~i~~l 219 (228)
T PRK10584 147 -----LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL-QLA-ARCDRRLRL 219 (228)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998765567777766654 455 559999999
Q ss_pred eCCeEEEe
Q 000517 418 AEGKIVYH 425 (1449)
Q Consensus 418 ~~G~iv~~ 425 (1449)
++|++++.
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999753
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=284.83 Aligned_cols=202 Identities=27% Similarity=0.403 Sum_probs=174.3
Q ss_pred ccccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-------CceEEEEc
Q 000517 179 SLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-------PKTSAYIS 251 (1449)
Q Consensus 179 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~ 251 (1449)
....+.+||++|++.|++||-++|+|||||||||||-+|+|+-+|+ +|+|.+.|+++..+.. .+.+|+|+
T Consensus 18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVF 94 (228)
T COG4181 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVF 94 (228)
T ss_pred CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEE
Confidence 3445678999999999999999999999999999999999999998 9999999999876542 36899999
Q ss_pred CCCccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccc
Q 000517 252 QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCA 331 (1449)
Q Consensus 252 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 331 (1449)
|...++|+||..||+...+.++|...+. . .......|+.+||.+..
T Consensus 95 QSF~Lip~ltAlENV~lPleL~ge~~~~----------------------~------------~~~A~~lL~~vGLg~Rl 140 (228)
T COG4181 95 QSFHLIPNLTALENVALPLELRGESSAD----------------------S------------RAGAKALLEAVGLGKRL 140 (228)
T ss_pred EeeeccccchhhhhccchhhhcCCcccc----------------------H------------HHHHHHHHHHhCccccc
Confidence 9999999999999999988877643211 0 11235578999999988
Q ss_pred cccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhc
Q 000517 332 DTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLF 411 (1449)
Q Consensus 332 dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~f 411 (1449)
+.+.+. |||||+|||+||||+...|+|||-||||-.||..|..+|.+.|=.+.+..+.|.|+..|.| ....-|
T Consensus 141 ~HyP~q-----LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc 213 (228)
T COG4181 141 THYPAQ-----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARC 213 (228)
T ss_pred ccCccc-----cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhh
Confidence 888775 9999999999999999999999999999999999999999999888887777777665543 577889
Q ss_pred CeEEEEeCCeEEE
Q 000517 412 DDIILMAEGKIVY 424 (1449)
Q Consensus 412 D~v~lL~~G~iv~ 424 (1449)
||.+-|.+|+++.
T Consensus 214 ~R~~r~~~G~l~~ 226 (228)
T COG4181 214 DRQLRLRSGRLVE 226 (228)
T ss_pred hheeeeecceecc
Confidence 9999999999874
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=321.25 Aligned_cols=214 Identities=22% Similarity=0.282 Sum_probs=172.4
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISGY 925 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G~ 925 (1449)
+.++|+++.+ +++.+|+|+|++|++|++++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 5 l~~~~l~~~~-------------~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 71 (251)
T PRK14249 5 IKIRGVNFFY-------------HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNE 71 (251)
T ss_pred EEEEEEEEEE-------------CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCE
Confidence 5566766543 2245999999999999999999999999999999999976542 13699999998
Q ss_pred cCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000517 926 PKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGIP 996 (1449)
Q Consensus 926 ~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 996 (1449)
+... ..+++.++|++|++.+++. |++||+.+....+... ..+..++.++++++.++|.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~---- 144 (251)
T PRK14249 72 NIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTT--AQSRLDEVVEKSLRQAALWDEVKDNLHKS---- 144 (251)
T ss_pred EccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCC--hhhHHHHHHHHHHHHhCCchhhhhHhhCC----
Confidence 7532 2346789999999988875 9999999875433111 12223455777888888753 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEec
Q 000517 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 997 ~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~ 1076 (1449)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|.
T Consensus 145 -~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~- 220 (251)
T PRK14249 145 -GLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLL- 220 (251)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEe-
Confidence 34799999999999999999999999999999999999999999999985 5899999999986 5677889999997
Q ss_pred CcEEEEecCC
Q 000517 1077 GGRIIYCGPL 1086 (1449)
Q Consensus 1077 gG~~v~~G~~ 1086 (1449)
+|++++.|+.
T Consensus 221 ~G~i~~~~~~ 230 (251)
T PRK14249 221 TGDLVEYGRT 230 (251)
T ss_pred CCeEEEeCCH
Confidence 5899999886
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=320.16 Aligned_cols=206 Identities=24% Similarity=0.337 Sum_probs=164.2
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC--CeeeEEEECCccCCCC-----CCCceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL--KVTGEVSYNGYKLEEF-----VPPKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1449)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+. ..+|+|.++|+++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 48999999999999999999999999999999999998631 1389999999876421 1245799999998777
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCC----Cccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGL----DVCADT 333 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL----~~~~dt 333 (1449)
+ +||+||+.++....+.... .+ .+..++.+++.+|+ ++..++
T Consensus 101 ~-~tv~eni~~~~~~~~~~~~---------~~------------------------~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 L-MSIYDNISYGPKIHGTKDK---------KK------------------------LDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred c-CcHHHHHHHHHHhcCCCCH---------HH------------------------HHHHHHHHHHHhCCchhhHHHHhC
Confidence 4 9999999987543221000 00 01123456677776 334566
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.+++ |||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++ +|..+++.+++|+
T Consensus 147 ~~~~-----LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~-sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 NALS-----LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIV-THNMQQAGRISDR 218 (254)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--CCEEEEE-eCCHHHHHHhCCE
Confidence 6554 999999999999999999999999999999999999999999999853 5666665 4556678899999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000517 414 IILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~ 432 (1449)
+++|++|+++..|+++++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988774
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=326.79 Aligned_cols=215 Identities=22% Similarity=0.324 Sum_probs=173.6
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCC--CC-eeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT--SG-YVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G 924 (1449)
.+.++|+++.++ ...+|+|+|++|++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 467788776542 2359999999999999999999999999999999999643 20 2589999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc----ccccccccC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----AIKDSLVGI 995 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 995 (1449)
.+... ..+++.++|++|++.+++. ||.||+.+....+.. .+....++.+.++++.+++. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87531 1346679999999988774 999999986543211 11233345677888888874 333443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999865 689999999986 4677899999998
Q ss_pred cCcEEEEecCC
Q 000517 1076 TGGRIIYCGPL 1086 (1449)
Q Consensus 1076 ~gG~~v~~G~~ 1086 (1449)
+|+++..|+.
T Consensus 256 -~G~i~~~g~~ 265 (286)
T PRK14275 256 -EGVLVEHAPT 265 (286)
T ss_pred -CCEEEEeCCH
Confidence 5899999885
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=321.76 Aligned_cols=215 Identities=26% Similarity=0.322 Sum_probs=173.9
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 924 (1449)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 366777776542 346999999999999999999999999999999999964321 1379999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGI 995 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 995 (1449)
.+... ...++.++|++|++.+++. ||+||+.+....+.. ......++.+.++++.+++.+ ..++.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 146 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDS--- 146 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcC---
Confidence 87532 2345679999999988874 999999987544321 122334456788889888753 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|.
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14261 147 --ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999875 689999999976 4667899999997
Q ss_pred cCcEEEEecCC
Q 000517 1076 TGGRIIYCGPL 1086 (1449)
Q Consensus 1076 ~gG~~v~~G~~ 1086 (1449)
+|+++..|+.
T Consensus 223 -~G~i~~~g~~ 232 (253)
T PRK14261 223 -LGKLIEFDKT 232 (253)
T ss_pred -CCEEEEcCCH
Confidence 5899999885
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=312.85 Aligned_cols=185 Identities=28% Similarity=0.341 Sum_probs=159.5
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc--ccccceEEEEccCCCCCCCCC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ--ETFARVSGYCEQTDIHSPNIT 950 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~~lT 950 (1449)
++.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccccHHhhhheEEeccccccCCCcC
Confidence 34699999999999999999999999999999999998665 48999999987532 345668999999998888999
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000517 951 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1030 (1449)
Q Consensus 951 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsg 1030 (1449)
++||+.+.... ...+.++++++.++|.+..++.+ ..||||||||++|||+|+.+|++|+|||||+|
T Consensus 90 v~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~ 155 (201)
T cd03231 90 VLENLRFWHAD---------HSDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTA 155 (201)
T ss_pred HHHHHHhhccc---------ccHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 99999874211 12356788999999988777664 37999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEE
Q 000517 1031 LDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILL 1074 (1449)
Q Consensus 1031 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l 1074 (1449)
||+.+...+++.|+++.++|+|+|+++|++. ++...+++++.+
T Consensus 156 LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 156 LDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999998777999999999976 567788888776
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=321.27 Aligned_cols=215 Identities=22% Similarity=0.317 Sum_probs=173.2
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCC--C-eeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTS--G-YVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~--~-~~~G~I~i~G 924 (1449)
.+.++|+++++. .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 366777776542 24699999999999999999999999999999999997641 1 2589999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGI 995 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 995 (1449)
.+... ...++.++|++|++.+++ .||+||+.+....+.. ...+..++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87531 234567999999988776 7999999876433211 112233456788899999842 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 347999999999999999999999999999999999999999999999854 799999999986 5677899999997
Q ss_pred cCcEEEEecCC
Q 000517 1076 TGGRIIYCGPL 1086 (1449)
Q Consensus 1076 ~gG~~v~~G~~ 1086 (1449)
+|+++..|+.
T Consensus 221 -~G~i~~~~~~ 230 (251)
T PRK14251 221 -NGDLIEAGPT 230 (251)
T ss_pred -CCEEEEeCCH
Confidence 5899998875
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=371.12 Aligned_cols=206 Identities=26% Similarity=0.392 Sum_probs=170.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1449)
+++|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|. .
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-G 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-c
Confidence 45999999999999999999999999999999999999998 9999999999876653 678999999888775 6
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
|++|||.++. |+.+.++..+++...+.. +.++ .++...||.+|+. .
T Consensus 568 Ti~eNi~l~~-------------------------~~~~~~~i~~al~~~~l~------~~i~--~lp~gl~t~i~e~-G 613 (710)
T TIGR03796 568 TVRDNLTLWD-------------------------PTIPDADLVRACKDAAIH------DVIT--SRPGGYDAELAEG-G 613 (710)
T ss_pred cHHHHhhCCC-------------------------CCCCHHHHHHHHHHhCCH------HHHH--hCcCcccceeccC-C
Confidence 9999997641 112223333444333332 1222 3677889999975 4
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
+.||||||||++||||++++|++|+||||||+||+.++.+|.+.|++ .++|+|+..|++ +....+|+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCCEEEEEeCC
Confidence 66999999999999999999999999999999999999999999876 368888876664 456789999999999
Q ss_pred eEEEecChhhHHH
Q 000517 421 KIVYHGPQDHVLA 433 (1449)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1449)
+++..|+++++++
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=322.32 Aligned_cols=221 Identities=22% Similarity=0.299 Sum_probs=176.2
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 924 (1449)
.++++|+++.+. +..+|+|+||++++||+++|+|+||||||||+++|+|...+. ..+|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 367778776542 235999999999999999999999999999999999976542 1369999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVN 999 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 999 (1449)
.+... ...++.++|++|+..+++ .|+.||+.+....... ....+..+.+.++++.+++.+..+...+. .+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87421 234567999999988887 8999999876433211 12233346678899999985422111121 134
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecC-
Q 000517 1000 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTG- 1077 (1449)
Q Consensus 1000 ~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~g- 1077 (1449)
.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ .|+|||++||++. ++.+.+|++++|+++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999986 578899999999842
Q ss_pred ---cEEEEecCC
Q 000517 1078 ---GRIIYCGPL 1086 (1449)
Q Consensus 1078 ---G~~v~~G~~ 1086 (1449)
|++++.|++
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 899999986
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=322.90 Aligned_cols=207 Identities=25% Similarity=0.351 Sum_probs=170.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC------CCceEEEEcCCC--c
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV------PPKTSAYISQND--L 255 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d--~ 255 (1449)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|+++|.++.... .++.++|++|++ .
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 46999999999999999999999999999999999999997 999999998876432 135699999986 4
Q ss_pred cCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC-cccccc
Q 000517 256 HIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD-VCADTM 334 (1449)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 334 (1449)
+.+.+||+||+.+....... ....+ ....++.+++.+||. ...+..
T Consensus 101 ~~~~~tv~~~l~~~~~~~~~---------~~~~~------------------------~~~~~~~~l~~~gl~~~~~~~~ 147 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLTS---------LDESE------------------------QKARIAELLDMVGLRSEDADKL 147 (265)
T ss_pred cCCCCCHHHHHHHHHHHhcC---------CCHHH------------------------HHHHHHHHHHHcCCChhhhhCC
Confidence 66789999999875431100 00000 011246678999996 566776
Q ss_pred ccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeE
Q 000517 335 VGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDI 414 (1449)
Q Consensus 335 vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v 414 (1449)
+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..++|+|++. |..+.+.+++|++
T Consensus 148 ~~~-----LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivs-H~~~~~~~~~d~i 221 (265)
T TIGR02769 148 PRQ-----LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFIT-HDLRLVQSFCQRV 221 (265)
T ss_pred hhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe-CCHHHHHHHhcEE
Confidence 655 9999999999999999999999999999999999999999999998764466766654 5567888899999
Q ss_pred EEEeCCeEEEecChhhHH
Q 000517 415 ILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1449)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 222 AVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEeCCEEEEECCHHHHc
Confidence 999999999999988774
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=315.99 Aligned_cols=201 Identities=22% Similarity=0.424 Sum_probs=168.9
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-CceEEEEcCCCccCCCCCHHHHHH
Q 000517 189 HVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTVRETVD 267 (1449)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1449)
|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999987 9999999998754322 357999999998999999999998
Q ss_pred HHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCChhh
Q 000517 268 FSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQ 347 (1449)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlSGGq 347 (1449)
+.... ..... .. .+..++.+++.+||++..++.+.. |||||
T Consensus 94 ~~~~~-~~~~~--------~~-------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLKLN--------AA-------------------------QREKLHAIARQMGIEDLLARLPGQ-----LSGGQ 134 (232)
T ss_pred ccccc-ccCCC--------HH-------------------------HHHHHHHHHHHcCcHHHHhCCccc-----CCHHH
Confidence 75321 00000 00 012356688999998888888765 99999
Q ss_pred hhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEEEecC
Q 000517 348 KKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGP 427 (1449)
Q Consensus 348 rkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv~~G~ 427 (1449)
|||++||++++.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++. |...++.+++|++++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~s-H~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVS-HSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE-CCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998765567777765 55667889999999999999999999
Q ss_pred hhhHH
Q 000517 428 QDHVL 432 (1449)
Q Consensus 428 ~~~~~ 432 (1449)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 88765
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=320.44 Aligned_cols=204 Identities=24% Similarity=0.335 Sum_probs=168.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCC----------------CCCceEE
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF----------------VPPKTSA 248 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~----------------~~~~~~~ 248 (1449)
++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|+++|.++... ..++.++
T Consensus 19 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (257)
T PRK10619 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT 95 (257)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhceE
Confidence 5899999999999999999999999999999999999987 99999999876421 1135799
Q ss_pred EEcCCCccCCCCCHHHHHHHHHH-ccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCC
Q 000517 249 YISQNDLHIAEMTVRETVDFSAR-CQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGL 327 (1449)
Q Consensus 249 yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL 327 (1449)
|++|++.+++.+||+||+.++.. ..+.. ..+ ....+.++++.+||
T Consensus 96 ~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl 141 (257)
T PRK10619 96 MVFQHFNLWSHMTVLENVMEAPIQVLGLS----------KQE------------------------ARERAVKYLAKVGI 141 (257)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhCCCC----------HHH------------------------HHHHHHHHHHHcCC
Confidence 99999999999999999987542 11100 000 01124567899999
Q ss_pred Cccc-cccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchh
Q 000517 328 DVCA-DTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPE 406 (1449)
Q Consensus 328 ~~~~-dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~ 406 (1449)
.+.. ++.++. ||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++. |...+
T Consensus 142 ~~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivs-H~~~~ 214 (257)
T PRK10619 142 DERAQGKYPVH-----LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVT-HEMGF 214 (257)
T ss_pred ChhhhhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEe-CCHHH
Confidence 7653 555544 999999999999999999999999999999999999999999999875 467776654 55667
Q ss_pred HHhhcCeEEEEeCCeEEEecChhhHH
Q 000517 407 TFDLFDDIILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 407 ~~~~fD~v~lL~~G~iv~~G~~~~~~ 432 (1449)
+.++||+|++|++|++++.|+.+++.
T Consensus 215 ~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 215 ARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 88899999999999999999988764
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=320.03 Aligned_cols=206 Identities=19% Similarity=0.339 Sum_probs=171.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCccCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIAE 259 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1449)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|+++|.++..... ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 35999999999999999999999999999999999999987 9999999988754332 3569999999988999
Q ss_pred CCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccc
Q 000517 260 MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAM 339 (1449)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 339 (1449)
+||+||+.+..+...... ..+ .+..++.+++.+||++..++.+++
T Consensus 93 ~tv~enl~~~~~~~~~~~---------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-- 137 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDLS---------AEQ------------------------REDRANELMEEFHIEHLRDSMGQS-- 137 (241)
T ss_pred CcHHHHHhhhhhcccccC---------HHH------------------------HHHHHHHHHHHcCCHHHhhcchhh--
Confidence 999999987643211000 000 012346678899998777776655
Q ss_pred cccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeC
Q 000517 340 RRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419 (1449)
Q Consensus 340 ~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~ 419 (1449)
|||||||||+||++++.+|++|+|||||+|||+.++..+.+.|+++.+ .++|+|++.| ...++.+++|++++|++
T Consensus 138 ---LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH-~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 138 ---LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDH-NVRETLAVCERAYIVSQ 212 (241)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEc-CHHHHHHhcCEEEEEeC
Confidence 999999999999999999999999999999999999999999999865 4677777654 45688899999999999
Q ss_pred CeEEEecChhhHH
Q 000517 420 GKIVYHGPQDHVL 432 (1449)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1449)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=353.70 Aligned_cols=209 Identities=23% Similarity=0.360 Sum_probs=173.8
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccc----cccceEEEEccCCCCCCC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQE----TFARVSGYCEQTDIHSPN 948 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~----~~~~~~gyv~Q~d~~~~~ 948 (1449)
++.+|+|||+++++||++||+||||||||||+++|+|...+++.+|+|.++|.+.... ..++.+||++|++.+++.
T Consensus 13 ~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 3469999999999999999999999999999999999765422489999999875321 134569999999988999
Q ss_pred CCHHHHHHHHHHhccCC-CCChHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000517 949 ITVEESVIFSAWLRLAP-EINSKTKAEFVNEVLETIELDAIK-DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1026 (1449)
Q Consensus 949 lTv~e~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDE 1026 (1449)
+||.||+.+....+... ....+...+.++++++.++|.+.. +..++ .|||||||||+||++|+.+|++|+|||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~iA~al~~~p~lllLDE 167 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVG-----DYGGGQQQLVEIAKALNKQARLLILDE 167 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 99999998764322111 112233456788999999997654 44443 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCC
Q 000517 1027 PTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGK 1088 (1449)
Q Consensus 1027 PTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~ 1088 (1449)
||+|||+.+...+.+.|++++++|+|||++||+++ .+.+.+|++++|. +|++++.|+..+
T Consensus 168 Pt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~-~G~i~~~~~~~~ 227 (500)
T TIGR02633 168 PSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIR-DGQHVATKDMST 227 (500)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEe-CCeEeeecCccc
Confidence 99999999999999999999888999999999986 5677899999997 589999998764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=335.81 Aligned_cols=199 Identities=23% Similarity=0.445 Sum_probs=170.3
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCC-------CCCceEEEEcCCCccCCCCC
Q 000517 189 HVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF-------VPPKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 261 (1449)
|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 899999999999999999999999999999999997 99999999887532 12467999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|+||+.|+..... . .+ .+..++++++.+||++..|+.+++
T Consensus 92 v~enl~~~~~~~~---~---------~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~---- 131 (354)
T TIGR02142 92 VRGNLRYGMKRAR---P---------SE------------------------RRISFERVIELLGIGHLLGRLPGR---- 131 (354)
T ss_pred HHHHHHHHhhccC---h---------hH------------------------HHHHHHHHHHHcCChhHhcCChhh----
Confidence 9999998653210 0 00 011246688999999888888765
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++. |..+++..++|+|++|++|+
T Consensus 132 -LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivt-H~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 132 -LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVS-HSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999998765566766654 55678889999999999999
Q ss_pred EEEecChhhHH
Q 000517 422 IVYHGPQDHVL 432 (1449)
Q Consensus 422 iv~~G~~~~~~ 432 (1449)
++..|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999988874
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=332.90 Aligned_cols=212 Identities=24% Similarity=0.409 Sum_probs=179.4
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++++|++++++.+ ..++|+|+|+++++||.+||+|+||||||||+..|+|...+ .+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~--~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP--QQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC--CCCeeeECCcCh
Confidence 67888988877543 34699999999999999999999999999999999997654 589999999875
Q ss_pred c---cccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccc-------cccccCCC
Q 000517 928 V---QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK-------DSLVGIPG 997 (1449)
Q Consensus 928 ~---~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~~ 997 (1449)
. ++.+++.+++++|...+| .-|+++||.++ +++ ..++.+.++++.+||++.. |+.+|..|
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA-----~~~----AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G 472 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLF-SGTLRDNLRLA-----NPD----ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGG 472 (573)
T ss_pred hhCChhhHHHHHhhhccchHHH-HHHHHHHHhhc-----CCC----CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCC
Confidence 3 344677899999987665 56999999764 122 2346688999999998754 45677655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
+.||||||||++|||+|++|.++++|||||.|||+.+.++|++.|.+-++ |+|+|++||+.. -.+.||+|++|+ +
T Consensus 473 -~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~-~ 547 (573)
T COG4987 473 -RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLD-N 547 (573)
T ss_pred -CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEE-C
Confidence 46999999999999999999999999999999999999999999998764 999999999975 468899999997 6
Q ss_pred cEEEEecCCC
Q 000517 1078 GRIIYCGPLG 1087 (1449)
Q Consensus 1078 G~~v~~G~~~ 1087 (1449)
|++++.|..+
T Consensus 548 Gkiie~G~~~ 557 (573)
T COG4987 548 GKIIEEGTHA 557 (573)
T ss_pred CeeeecCCHH
Confidence 9999999864
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=288.80 Aligned_cols=212 Identities=23% Similarity=0.321 Sum_probs=179.8
Q ss_pred hccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc-------------c--
Q 000517 865 RERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV-------------Q-- 929 (1449)
Q Consensus 865 ~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~-------------~-- 929 (1449)
.+..+.++...+|++||++.++|+.+.|+|.|||||||+|+||.-..+| ..|.|.+||..+. .
T Consensus 10 ~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P--~~G~I~v~geei~~k~~~~G~l~~ad~~q 87 (256)
T COG4598 10 EDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SAGSIRVNGEEIRLKRDKDGQLKPADKRQ 87 (256)
T ss_pred hHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCC--CCceEEECCeEEEeeeCCCCCeeeCCHHH
Confidence 3444567778899999999999999999999999999999999876555 5899999996531 0
Q ss_pred -ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000517 930 -ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKR 1008 (1449)
Q Consensus 930 -~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 1008 (1449)
...|...|+|+|+-.++..+||.||+.-+-..- ...++.+..++.+..|..+|+.+.+|.... .|||||+||
T Consensus 88 ~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~-----~LSGGQQQR 160 (256)
T COG4598 88 LQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYPA-----HLSGGQQQR 160 (256)
T ss_pred HHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCcc-----ccCchHHHH
Confidence 124556899999999999999999997543211 134566777889999999999998887643 799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1009 LTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1009 l~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
++|||||+.+|+++++|||||.|||+-.-++.+.+++++++|+|.+++||.... ..+...+++.|. +|.+-+.||+.
T Consensus 161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh-~G~iEE~G~P~ 237 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLH-QGKIEEEGPPE 237 (256)
T ss_pred HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEee-cceecccCChH
Confidence 999999999999999999999999999999999999999999999999998764 445678899997 58999999984
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=327.87 Aligned_cols=205 Identities=23% Similarity=0.368 Sum_probs=169.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC-------CCceEEEEcCCCc-
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV-------PPKTSAYISQNDL- 255 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~- 255 (1449)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 35999999999999999999999999999999999999998 999999998875321 1346899999862
Q ss_pred cCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC-cccccc
Q 000517 256 HIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD-VCADTM 334 (1449)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 334 (1449)
.+..+||+||+.|+....+.. +.+ ....++.+++.+||. ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------EDE------------------------AKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCChhHhhCC
Confidence 344689999998865432110 000 011346688999997 567777
Q ss_pred ccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeE
Q 000517 335 VGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDI 414 (1449)
Q Consensus 335 vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v 414 (1449)
+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++.++||++
T Consensus 143 ~~~-----LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvliv-sH~~~~~~~~~d~v 215 (287)
T PRK13641 143 PFE-----LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILV-THNMDDVAEYADDV 215 (287)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-eCCHHHHHHhCCEE
Confidence 766 999999999999999999999999999999999999999999999864 46666664 56678889999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 000517 415 ILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1449)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=323.68 Aligned_cols=204 Identities=25% Similarity=0.388 Sum_probs=170.5
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc------ccccceEEEEccCC--CC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ------ETFARVSGYCEQTD--IH 945 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~------~~~~~~~gyv~Q~d--~~ 945 (1449)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++ .+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV 102 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc
Confidence 5699999999999999999999999999999999997654 58999999986532 12456799999997 35
Q ss_pred CCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000517 946 SPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 1024 (1449)
Q Consensus 946 ~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illL 1024 (1449)
.+..|+.|++.+..... .........+.++++++.+|+. +..++.+ ..||||||||++|||+|+.+|++|+|
T Consensus 103 ~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~LS~Ge~qrl~laral~~~p~lllL 175 (268)
T PRK10419 103 NPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP-----PQLSGGQLQRVCLARALAVEPKLLIL 175 (268)
T ss_pred CCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----ccCChHHHHHHHHHHHHhcCCCEEEE
Confidence 67899999987643211 1122334456789999999996 4566654 37999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCC
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGK 1088 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~ 1088 (1449)
||||+|||+.+...+.+.|++++++ |.|||+++|++. ++.+.+|++++|. +|++++.|+..+
T Consensus 176 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~G~i~~~g~~~~ 238 (268)
T PRK10419 176 DEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-NGQIVETQPVGD 238 (268)
T ss_pred eCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-CCEEeeeCChhh
Confidence 9999999999999999999998765 899999999986 5667899999997 589999998753
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=359.99 Aligned_cols=208 Identities=29% Similarity=0.465 Sum_probs=170.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1449)
+++|+|+|+.++|||.+||+||||||||||+++|.|.++|+ +|+|.+||+++++... ++.++||+|++.+|. .
T Consensus 342 ~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~ 417 (567)
T COG1132 342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-G 417 (567)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-c
Confidence 46999999999999999999999999999999999999997 9999999999887654 578999999888777 8
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
||+|||.++.. +.+.++..+++...+ .++.+. .++++.||.||+. .
T Consensus 418 TI~~NI~~g~~-------------------------~at~eei~~a~k~a~------~~d~I~--~lp~g~dt~vge~-G 463 (567)
T COG1132 418 TIRENIALGRP-------------------------DATDEEIEEALKLAN------AHEFIA--NLPDGYDTIVGER-G 463 (567)
T ss_pred cHHHHHhcCCC-------------------------CCCHHHHHHHHHHhC------hHHHHH--hCcccccceecCC-C
Confidence 99999998631 111122233332221 122223 3588899999953 4
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
..||||||||++||||++.+|++|+||||||+||+.+...|.+.++++. .++|+++..|++ + +...+|+|++|++|
T Consensus 464 ~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHRl-s-ti~~aD~IiVl~~G 539 (567)
T COG1132 464 VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHRL-S-TIKNADRIIVLDNG 539 (567)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEeccH-h-HHHhCCEEEEEECC
Confidence 4599999999999999999999999999999999999999999999776 357888855544 3 44559999999999
Q ss_pred eEEEecChhhHHH
Q 000517 421 KIVYHGPQDHVLA 433 (1449)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1449)
++++.|+++++..
T Consensus 540 ~i~e~G~h~eLl~ 552 (567)
T COG1132 540 RIVERGTHEELLA 552 (567)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999975
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=369.08 Aligned_cols=208 Identities=26% Similarity=0.370 Sum_probs=176.9
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++++|++|+++. .++.+|+|+|++|+|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEc
Confidence 5889999988742 124699999999999999999999999999999999998765 589999999886
Q ss_pred c---cccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000517 928 V---QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI-------KDSLVGIPG 997 (1449)
Q Consensus 928 ~---~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 997 (1449)
. ...+|+.+|||+|++.+++ -|++||+.++. + .+ ++.++++++..++.+. .|+.+|..|
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G 586 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGG 586 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 4 3567889999999998875 59999998641 1 12 3456777887777643 477787665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
..||||||||++|||||+++|+||+||||||+||+.+.+.+++.|+++ ++|+|+++|+++ ..+.+|++++|+ +
T Consensus 587 -~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~-~ 659 (686)
T TIGR03797 587 -GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLD-A 659 (686)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEE-C
Confidence 469999999999999999999999999999999999999999999886 689999999975 567899999998 5
Q ss_pred cEEEEecCC
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~v~~G~~ 1086 (1449)
|++++.|+.
T Consensus 660 G~iv~~G~~ 668 (686)
T TIGR03797 660 GRVVQQGTY 668 (686)
T ss_pred CEEEEECCH
Confidence 899999985
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=322.46 Aligned_cols=214 Identities=21% Similarity=0.270 Sum_probs=172.8
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 924 (1449)
.+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 20 ~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 86 (274)
T PRK14265 20 VFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRD 86 (274)
T ss_pred eEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECC
Confidence 577788876542 246999999999999999999999999999999999975321 2479999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc----ccccccccC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----AIKDSLVGI 995 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 995 (1449)
.+... ..+++.++|++|+..+++. ||.||+.+....+. .. ...++.+++.++.+++. +..+..
T Consensus 87 ~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 158 (274)
T PRK14265 87 RNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK--- 158 (274)
T ss_pred EecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC---
Confidence 87531 2345689999999887764 99999987643321 11 12234567778888874 223333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
+..||||||||++|||||+.+|++|||||||+|||+.+...+.+.|+++++ ++|||+++|+++ .+.+.+|++++|+
T Consensus 159 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 234 (274)
T PRK14265 159 --GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFN 234 (274)
T ss_pred --cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 347999999999999999999999999999999999999999999999865 799999999986 5778899999997
Q ss_pred --------cCcEEEEecCC
Q 000517 1076 --------TGGRIIYCGPL 1086 (1449)
Q Consensus 1076 --------~gG~~v~~G~~ 1086 (1449)
+.|++++.|++
T Consensus 235 ~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 235 TEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred cccccccccCceEEEeCCH
Confidence 26899999986
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=308.55 Aligned_cols=179 Identities=24% Similarity=0.338 Sum_probs=151.2
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-----ccccceEEEEccCCC-CC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-----ETFARVSGYCEQTDI-HS 946 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-----~~~~~~~gyv~Q~d~-~~ 946 (1449)
++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 34699999999999999999999999999999999998664 58999999987531 134567999999973 33
Q ss_pred CCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000517 947 PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1026 (1449)
Q Consensus 947 ~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDE 1026 (1449)
...||+||+.+..... ....+...+.++++++.++|.+..++.++ .||||||||++|||||+.+|++|+|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTH-----CLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999998865432 12333445678899999999887777654 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCcc
Q 000517 1027 PTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPS 1061 (1449)
Q Consensus 1027 PTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~ 1061 (1449)
||+|||+.+...+.+.|++++++|+|||+++|++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999974
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=323.32 Aligned_cols=209 Identities=25% Similarity=0.390 Sum_probs=170.7
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1449)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++.+|
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 5899999999999999999999999999999999999987 9999999987654321 356999999988889999
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|.||+.++.... .... +. .. + ..+..++.+++.+||++..++.+++
T Consensus 102 v~e~l~~~~~~~-~~~~--------------~~-~~-~-------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 147 (265)
T PRK10575 102 VRELVAIGRYPW-HGAL--------------GR-FG-A-------------ADREKVEEAISLVGLKPLAHRLVDS---- 147 (265)
T ss_pred HHHHHHhCcccc-cccc--------------cC-CC-H-------------HHHHHHHHHHHHcCCHHHhcCCccc----
Confidence 999998753110 0000 00 00 0 0011246688999998777888775
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++. |..+++.+++|+|++|++|+
T Consensus 148 -LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~s-H~~~~i~~~~d~i~~l~~G~ 225 (265)
T PRK10575 148 -LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVL-HDINMAARYCDYLVALRGGE 225 (265)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCe
Confidence 9999999999999999999999999999999999999999999998764466766655 55668889999999999999
Q ss_pred EEEecChhhHH
Q 000517 422 IVYHGPQDHVL 432 (1449)
Q Consensus 422 iv~~G~~~~~~ 432 (1449)
++..|+.+++.
T Consensus 226 i~~~~~~~~~~ 236 (265)
T PRK10575 226 MIAQGTPAELM 236 (265)
T ss_pred EEEecCHHHhc
Confidence 99999887653
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=320.08 Aligned_cols=214 Identities=22% Similarity=0.306 Sum_probs=171.3
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCC--CC-eeEEEEEEcCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT--SG-YVEGEIKISGY 925 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G~ 925 (1449)
+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... +. ..+|+|.++|.
T Consensus 6 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 72 (252)
T PRK14255 6 ITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQ 72 (252)
T ss_pred EEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCE
Confidence 56777765442 2469999999999999999999999999999999999643 21 14799999998
Q ss_pred cCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc----ccccccccCC
Q 000517 926 PKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----AIKDSLVGIP 996 (1449)
Q Consensus 926 ~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~~ 996 (1449)
+... ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++. +..+..
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~---- 145 (252)
T PRK14255 73 NIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES---- 145 (252)
T ss_pred EcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC----
Confidence 7531 234567999999988887 6999999886543321 11222334567788888764 223333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEec
Q 000517 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 997 ~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~ 1076 (1449)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ .+.+.+|++++|+
T Consensus 146 -~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~- 221 (252)
T PRK14255 146 -ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL- 221 (252)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE-
Confidence 347999999999999999999999999999999999999999999999865 589999999986 5778899999997
Q ss_pred CcEEEEecCC
Q 000517 1077 GGRIIYCGPL 1086 (1449)
Q Consensus 1077 gG~~v~~G~~ 1086 (1449)
+|+++..|+.
T Consensus 222 ~G~i~~~~~~ 231 (252)
T PRK14255 222 TGNLIEFADT 231 (252)
T ss_pred CCEEEEeCCH
Confidence 5899999875
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=314.38 Aligned_cols=196 Identities=22% Similarity=0.330 Sum_probs=163.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC------CCceEEEEcCCCccC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV------PPKTSAYISQNDLHI 257 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1449)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 35899999999999999999999999999999999999987 999999998875432 135789999998888
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGN 337 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 337 (1449)
+.+||+||+.+.....+... .+ ....++.+++.+||.+..++.+++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 137 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASG----------DD------------------------IRRRVSAALDKVGLLDKAKNFPIQ 137 (222)
T ss_pred ccccHHHHHHhHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCChhhhhCCchh
Confidence 99999999988654322100 00 001235678889998777777665
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL 417 (1449)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++ +|..+++...+|+|++|
T Consensus 138 -----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~-sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 138 -----LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMA-THDIGLISRRSYRMLTL 210 (222)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999865 35666655 55667888899999999
Q ss_pred eCCeEE
Q 000517 418 AEGKIV 423 (1449)
Q Consensus 418 ~~G~iv 423 (1449)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=315.15 Aligned_cols=195 Identities=24% Similarity=0.400 Sum_probs=163.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC------CCceEEEEcCCCccC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV------PPKTSAYISQNDLHI 257 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1449)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 35899999999999999999999999999999999999987 999999998875432 135699999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGN 337 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 337 (1449)
+.+||+||+.+.....+.. . .+ .+..++.+++.+||++..++.+++
T Consensus 91 ~~~t~~~~l~~~~~~~~~~-~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 136 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP-P---------RE------------------------IRKRVPAALELVGLSHKHRALPAE 136 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC-H---------HH------------------------HHHHHHHHHHHcCCHHHhhCChhh
Confidence 9999999999875432210 0 00 011245678899998877877765
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL 417 (1449)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++. |..+++.+++|++++|
T Consensus 137 -----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivt-H~~~~~~~~~d~i~~l 209 (214)
T cd03292 137 -----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVAT-HAKELVDTTRHRVIAL 209 (214)
T ss_pred -----cCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEe-CCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999865 466766655 4567788899999999
Q ss_pred eCCeE
Q 000517 418 AEGKI 422 (1449)
Q Consensus 418 ~~G~i 422 (1449)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=325.12 Aligned_cols=203 Identities=27% Similarity=0.369 Sum_probs=169.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCc-cCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDL-HIAE 259 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~-~~~~ 259 (1449)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .+..
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 4899999999999999999999999999999999999987 9999999998754321 356999999865 4677
Q ss_pred CCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccc
Q 000517 260 MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAM 339 (1449)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 339 (1449)
.||+||+.|.....+.. +.+ .+..++.+++.+||.+..++.+++
T Consensus 93 ~tv~enl~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~-- 136 (274)
T PRK13644 93 RTVEEDLAFGPENLCLP----------PIE------------------------IRKRVDRALAEIGLEKYRHRSPKT-- 136 (274)
T ss_pred chHHHHHHhhHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCHHHhcCCccc--
Confidence 89999998865432110 000 011246678999998888887765
Q ss_pred cccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeC
Q 000517 340 RRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419 (1449)
Q Consensus 340 ~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~ 419 (1449)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|+ ..++ ..+|+|++|++
T Consensus 137 ---LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~-~~~~-~~~d~v~~l~~ 210 (274)
T PRK13644 137 ---LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHN-LEEL-HDADRIIVMDR 210 (274)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecC-HHHH-hhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999875 46777776555 4566 56999999999
Q ss_pred CeEEEecChhhHH
Q 000517 420 GKIVYHGPQDHVL 432 (1449)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1449)
|++++.|+.+++.
T Consensus 211 G~i~~~g~~~~~~ 223 (274)
T PRK13644 211 GKIVLEGEPENVL 223 (274)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=318.99 Aligned_cols=198 Identities=25% Similarity=0.372 Sum_probs=168.7
Q ss_pred eeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---ccccceEEEEccCCCCCCCCCHH
Q 000517 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNITVE 952 (1449)
Q Consensus 876 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~ 952 (1449)
+|+|+||++++||+++|+|+||||||||+++|+|... .+|+|.++|.+... ..+++.++|++|++.+++.+|+.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999763 27999999987532 23445689999998888889999
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 000517 953 ESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMD 1025 (1449)
Q Consensus 953 e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~-------~p~illLD 1025 (1449)
||+.+.... ........+.++++++.++|.+..++.++ .||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVN-----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875211 11223335678899999999877777654 799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1026 EPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1026 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
|||+|||+.++..+.+.|++++++|+|||+++|+++ ++...+|++++|. +|++++.|+.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 218 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLK-QGKLLASGRRD 218 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 999999999999999999999877999999999976 5778899999997 58999999864
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=323.48 Aligned_cols=219 Identities=21% Similarity=0.293 Sum_probs=176.0
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 924 (1449)
.+.++|++++++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 467777776552 346999999999999999999999999999999999976531 3589999999
Q ss_pred ccCcc----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000517 925 YPKVQ----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNG 1000 (1449)
Q Consensus 925 ~~~~~----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 1000 (1449)
.++.. ..+++.++|++|++.+++ .|++||+.+...... ....++..+.+.++++.++|.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87532 234667999999988887 899999987643221 12233444566788999998753222111 12347
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEE
Q 000517 1001 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080 (1449)
Q Consensus 1001 LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~ 1080 (1449)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|. +|++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~-~G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFF-DGRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999876 589999999986 5778899999998 5899
Q ss_pred EEecCC
Q 000517 1081 IYCGPL 1086 (1449)
Q Consensus 1081 v~~G~~ 1086 (1449)
+..|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 999885
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=315.26 Aligned_cols=197 Identities=26% Similarity=0.368 Sum_probs=168.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCCccCCCCCHH
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVR 263 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1449)
.++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 35899999999999999999999999999999999999987 999999998765322 35799999999889999999
Q ss_pred HHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccC
Q 000517 264 ETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343 (1449)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGl 343 (1449)
||+.+.....+.. +..+..+++.+||++..|+.+++ |
T Consensus 89 ~~~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~~~-----L 125 (223)
T TIGR03740 89 ENLKVHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKKAKQ-----F 125 (223)
T ss_pred HHHHHHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhhHhh-----C
Confidence 9998765432100 01235578899998877877765 9
Q ss_pred ChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEE
Q 000517 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423 (1449)
Q Consensus 344 SGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv 423 (1449)
|||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|+ ..++.+.+|++++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~-~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHI-LSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCC-HHHHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999865 46777776554 56788999999999999999
Q ss_pred EecChh
Q 000517 424 YHGPQD 429 (1449)
Q Consensus 424 ~~G~~~ 429 (1449)
+.|++.
T Consensus 204 ~~~~~~ 209 (223)
T TIGR03740 204 YQGKIN 209 (223)
T ss_pred EecChh
Confidence 999864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=352.65 Aligned_cols=208 Identities=24% Similarity=0.338 Sum_probs=175.1
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc----ccccceEEEEccCCCCCCC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ----ETFARVSGYCEQTDIHSPN 948 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~d~~~~~ 948 (1449)
++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 35699999999999999999999999999999999998655 48999999987532 2235679999999988899
Q ss_pred CCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000517 949 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028 (1449)
Q Consensus 949 lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPT 1028 (1449)
+||+||+.+............+...+.++++++.+++.+..++.++ .|||||||||+||++|+.+|++|+|||||
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 9999999875321111011223344678899999999877777654 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCCC
Q 000517 1029 TGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKH 1089 (1449)
Q Consensus 1029 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~~ 1089 (1449)
+|||+.++..+.+.|+++++.|+|||+++|+++ ++...+|++++|. +|+++..|+..+.
T Consensus 163 ~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~~~ 221 (491)
T PRK10982 163 SSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILR-DGQWIATQPLAGL 221 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEeecChhhC
Confidence 999999999999999999888999999999986 5677899999998 5899999987653
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=346.21 Aligned_cols=210 Identities=23% Similarity=0.392 Sum_probs=175.8
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++++|++|+++. ++.+|+|+|++|+|||.+||+|+||||||||+++|+|...+ .+|+|.+||.+.
T Consensus 473 ~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~i 538 (708)
T TIGR01193 473 DIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFSL 538 (708)
T ss_pred cEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEEH
Confidence 5889999987641 23599999999999999999999999999999999998765 589999999875
Q ss_pred c---cccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000517 928 V---QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-------IKDSLVGIPG 997 (1449)
Q Consensus 928 ~---~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 997 (1449)
. ...+|+.+|||+|++.+++ .|++|||.++. .++.+ ++.++++++..++.+ -.|+.+|..|
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~----~~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G 609 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGA----KENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEEG 609 (708)
T ss_pred HHcCHHHHHHheEEEecCceehh-HHHHHHHhccC----CCCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCCC
Confidence 3 3567889999999998875 59999998742 11222 234566666666543 3577888655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
.+||||||||++||||++++|+||+||||||+||+.+...+++.|+++ +|+|+|+++|+++ ..+.+|++++|+ +
T Consensus 610 -~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~-~ 683 (708)
T TIGR01193 610 -SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLD-H 683 (708)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEE-C
Confidence 469999999999999999999999999999999999999999999985 5899999999985 567899999998 5
Q ss_pred cEEEEecCC
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~v~~G~~ 1086 (1449)
|++++.|+.
T Consensus 684 G~i~~~G~~ 692 (708)
T TIGR01193 684 GKIIEQGSH 692 (708)
T ss_pred CEEEEECCH
Confidence 899999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=359.20 Aligned_cols=209 Identities=24% Similarity=0.386 Sum_probs=172.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1449)
.++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 35999999999999999999999999999999999999998 9999999999876543 467999999988775 7
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
|++|||.++.. . +.+.+++.+++...+.. +.++ .|++..||.+|+. .
T Consensus 432 Ti~~Ni~~~~~----~--------------------~~~~~~i~~al~~~~l~------~~i~--~lp~Gldt~ig~~-g 478 (582)
T PRK11176 432 TIANNIAYART----E--------------------QYSREQIEEAARMAYAM------DFIN--KMDNGLDTVIGEN-G 478 (582)
T ss_pred hHHHHHhcCCC----C--------------------CCCHHHHHHHHHHhCcH------HHHH--hcccccCceeCCC-C
Confidence 99999987421 0 11223333333333322 2222 2678889999975 4
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
+.||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. .++|+|+..|++ +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~--~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRL--STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999874 367888777665 567889999999999
Q ss_pred eEEEecChhhHHH
Q 000517 421 KIVYHGPQDHVLA 433 (1449)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1449)
+++..|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999998864
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=315.57 Aligned_cols=205 Identities=23% Similarity=0.411 Sum_probs=173.0
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-CceEEEEcCCCccCCCCCHH
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTVR 263 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 263 (1449)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|++
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 5999999999999999999999999999999999999987 9999999988764332 45799999999888999999
Q ss_pred HHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccC
Q 000517 264 ETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343 (1449)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGl 343 (1449)
||+.+.....+... .+ ....++.+++.+|+....++.+++ |
T Consensus 91 enl~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----l 131 (237)
T TIGR00968 91 DNIAFGLEIRKHPK----------AK------------------------IKARVEELLELVQLEGLGDRYPNQ-----L 131 (237)
T ss_pred HHHHhHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCHhHhhCChhh-----C
Confidence 99988654321100 00 001245678889998777777765 9
Q ss_pred ChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEE
Q 000517 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423 (1449)
Q Consensus 344 SGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv 423 (1449)
|||||||++||++++.+|++++|||||+|||..+...+.+.|++++...++|+|++.|+ ..++.+++|++++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~-~~~~~~~~d~i~~l~~g~i~ 210 (237)
T TIGR00968 132 SGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHD-QEEAMEVADRIVVMSNGKIE 210 (237)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHhhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999876446788777655 46788999999999999999
Q ss_pred EecChhhHH
Q 000517 424 YHGPQDHVL 432 (1449)
Q Consensus 424 ~~G~~~~~~ 432 (1449)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (237)
T TIGR00968 211 QIGSPDEVY 219 (237)
T ss_pred EecCHHHHH
Confidence 999988774
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=296.01 Aligned_cols=213 Identities=25% Similarity=0.395 Sum_probs=183.8
Q ss_pred ccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc---cccccceEEEEccC
Q 000517 866 ERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV---QETFARVSGYCEQT 942 (1449)
Q Consensus 866 ~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~---~~~~~~~~gyv~Q~ 942 (1449)
+.++.++++.+|+|+|..|++|.+++|+|||||||||||.++++.... .+|+|.++|.+.. .+.+.+.++..-|+
T Consensus 6 nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~--d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~ 83 (252)
T COG4604 6 NVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK--DSGEITIDGLELTSTPSKELAKKLSILKQE 83 (252)
T ss_pred hhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc--cCceEEEeeeecccCChHHHHHHHHHHHhh
Confidence 344456778899999999999999999999999999999999986654 5899999998854 34577778888999
Q ss_pred CCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000517 943 DIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 1022 (1449)
Q Consensus 943 d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~il 1022 (1449)
......+||+|-+.|+..-.. .....++.+..+++.++.++|+++.|+... +||||||||.-||..++++.+.+
T Consensus 84 N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQrQRAfIAMVlaQdTdyv 157 (252)
T COG4604 84 NHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQRQRAFIAMVLAQDTDYV 157 (252)
T ss_pred chhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHhHH-----hcccchhhhhhhheeeeccCcEE
Confidence 888889999999999732211 222345667789999999999999999864 79999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCC
Q 000517 1023 FMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGK 1088 (1449)
Q Consensus 1023 lLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~ 1088 (1449)
+||||.++||...+..+|+.||+++++ |+|||++.||.+. ...+.|+++-|+ +|+++..|++++
T Consensus 158 lLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK-~G~vv~~G~~~e 222 (252)
T COG4604 158 LLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALK-NGKVVKQGSPDE 222 (252)
T ss_pred EecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeec-CCEEEecCCHHH
Confidence 999999999999999999999999876 9999999999875 445689999998 599999999864
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=326.29 Aligned_cols=205 Identities=23% Similarity=0.347 Sum_probs=166.7
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCC----C----CCCceEEEEcCCCc-
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE----F----VPPKTSAYISQNDL- 255 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~----~----~~~~~~~yv~Q~d~- 255 (1449)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 5899999999999999999999999999999999999987 9999999987642 1 12457999999863
Q ss_pred cCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC-cccccc
Q 000517 256 HIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD-VCADTM 334 (1449)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~ 334 (1449)
.+...||+||+.|+....+.. ..+ ....++.+++.+||+ +..++.
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~----------~~~------------------------~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGEN----------KQE------------------------AYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCChhHhcCC
Confidence 233469999998865322110 000 001245678889995 566777
Q ss_pred ccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeE
Q 000517 335 VGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDI 414 (1449)
Q Consensus 335 vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v 414 (1449)
+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..++|+|++. |..+++.++||++
T Consensus 148 ~~~-----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiis-H~~~~~~~~~d~i 221 (289)
T PRK13645 148 PFE-----LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVT-HNMDQVLRIADEV 221 (289)
T ss_pred hhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHHhCCEE
Confidence 665 9999999999999999999999999999999999999999999998764466766654 5566888999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 000517 415 ILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 415 ~lL~~G~iv~~G~~~~~~ 432 (1449)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=316.01 Aligned_cols=204 Identities=25% Similarity=0.415 Sum_probs=172.7
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC-CCceEEEEcCCCccCCCCCHHH
Q 000517 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV-PPKTSAYISQNDLHIAEMTVRE 264 (1449)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 264 (1449)
+|+|+|++++|||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999997 999999998876532 2457999999999999999999
Q ss_pred HHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCC
Q 000517 265 TVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGIS 344 (1449)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlS 344 (1449)
|+.++....+... .+ .+..+..+++.+||.+..++.+.+ ||
T Consensus 91 ~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK----------KE------------------------IERKVLEIAEMLGIDHLLNRKPET-----LS 131 (235)
T ss_pred HHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCChhHHhcCccc-----CC
Confidence 9988653321100 00 011245678889998888888765 99
Q ss_pred hhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEEE
Q 000517 345 GGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVY 424 (1449)
Q Consensus 345 GGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv~ 424 (1449)
||||||++||+|++.+|++++|||||+|||+.++..+.+.|++++...+.|++++.|+ .+++.+.+|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~-~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD-FEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999876557787776655 567888999999999999999
Q ss_pred ecChhhHH
Q 000517 425 HGPQDHVL 432 (1449)
Q Consensus 425 ~G~~~~~~ 432 (1449)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=366.47 Aligned_cols=208 Identities=27% Similarity=0.485 Sum_probs=174.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1449)
.++|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+|. .
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~ 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-G 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhh-h
Confidence 35899999999999999999999999999999999999998 9999999999877654 578999999887776 6
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
|++|||.++. |+.+.+++.+++...+.. +.++ .|++..||.+|+. .
T Consensus 554 TI~eNi~~~~-------------------------~~~~~~~i~~a~~~~~l~------~~i~--~lp~gl~T~i~e~-G 599 (694)
T TIGR03375 554 TLRDNIALGA-------------------------PYADDEEILRAAELAGVT------EFVR--RHPDGLDMQIGER-G 599 (694)
T ss_pred hHHHHHhCCC-------------------------CCCCHHHHHHHHHHcChH------HHHH--hCcccccceecCC-C
Confidence 9999998742 122333444444444332 2222 3788899999974 4
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
..||||||||++||||++.+|++++||||||+||+.+...|.+.|+++. .++|+|+..|++ ++.+.||+|++|++|
T Consensus 600 ~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl--~~~~~~D~iivl~~G 675 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRT--SLLDLVDRIIVMDNG 675 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCH--HHHHhCCEEEEEeCC
Confidence 5699999999999999999999999999999999999999999999875 367888877765 467899999999999
Q ss_pred eEEEecChhhHHH
Q 000517 421 KIVYHGPQDHVLA 433 (1449)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1449)
+++++|+++++++
T Consensus 676 ~i~e~G~~~eLl~ 688 (694)
T TIGR03375 676 RIVADGPKDQVLE 688 (694)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=317.36 Aligned_cols=208 Identities=24% Similarity=0.343 Sum_probs=167.1
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCeeeEEEECCccCCCCC---CCceEEEEcCCCccCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS--LKVTGEVSYNGYKLEEFV---PPKTSAYISQNDLHIAE 259 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~ 259 (1449)
++|+|+|+++++|++++|+||||||||||+++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.+++.
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 96 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN 96 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence 5899999999999999999999999999999999998741 113899999998875432 24579999999888999
Q ss_pred CCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc----cccccc
Q 000517 260 MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV----CADTMV 335 (1449)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~dt~v 335 (1449)
+||+||+.++....+.... ..+ ....++.+++.+||.+ ..|+.+
T Consensus 97 ~tv~enl~~~~~~~~~~~~--------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~~~ 144 (250)
T PRK14247 97 LSIFENVALGLKLNRLVKS--------KKE------------------------LQERVRWALEKAQLWDEVKDRLDAPA 144 (250)
T ss_pred CcHHHHHHHHHHhccccCC--------HHH------------------------HHHHHHHHHHHcCCCcchhhhhcCCc
Confidence 9999999987543211000 000 0112456788888853 345555
Q ss_pred cccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEE
Q 000517 336 GNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415 (1449)
Q Consensus 336 g~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~ 415 (1449)
++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++. |..+++.+.+|+++
T Consensus 145 ~~-----LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~s-H~~~~~~~~~d~i~ 216 (250)
T PRK14247 145 GK-----LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVT-HFPQQAARISDYVA 216 (250)
T ss_pred cc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEe-CCHHHHHHhcCEEE
Confidence 44 999999999999999999999999999999999999999999999853 56666654 55667889999999
Q ss_pred EEeCCeEEEecChhhHH
Q 000517 416 LMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1449)
+|++|+++..|+.+++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 217 FLYKGQIVEWGPTREVF 233 (250)
T ss_pred EEECCeEEEECCHHHHH
Confidence 99999999999988764
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=318.79 Aligned_cols=205 Identities=24% Similarity=0.346 Sum_probs=164.7
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC--CeeeEEEECCccCCCCC-----CCceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL--KVTGEVSYNGYKLEEFV-----PPKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~~ 257 (1449)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|.. ..+|+|.++|.++.... .++.++|++|++.++
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 105 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF 105 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccC
Confidence 58999999999999999999999999999999999987510 12899999998864321 245699999998877
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC----ccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD----VCADT 333 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~dt 333 (1449)
+ +||+||+.|+.+..+.. .++ .+..++.+++.+|+. +..++
T Consensus 106 ~-~tv~enl~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 150 (258)
T PRK14268 106 P-MSIYDNVAYGPRIHGAN----------KKD------------------------LDGVVENALRSAALWDETSDRLKS 150 (258)
T ss_pred c-ccHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCCcchhhhhcC
Confidence 7 89999999875432210 000 001245677888873 33455
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++. |..+++.+++|+
T Consensus 151 ~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivs-H~~~~~~~~~d~ 222 (258)
T PRK14268 151 PALS-----LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVT-HNMQQAARISDY 222 (258)
T ss_pred Chhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEE-CCHHHHHHhCCE
Confidence 5554 999999999999999999999999999999999999999999999853 56666654 556778899999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000517 414 IILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~ 432 (1449)
|++|++|++++.|+++++.
T Consensus 223 i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 223 TGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988763
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=353.13 Aligned_cols=211 Identities=23% Similarity=0.377 Sum_probs=179.7
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|++++++ ++.+|+|+||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 12 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 76 (510)
T PRK15439 12 LCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPCA 76 (510)
T ss_pred EEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 66777776542 34699999999999999999999999999999999998654 4899999998753
Q ss_pred c---cc-ccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000517 929 Q---ET-FARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTE 1004 (1449)
Q Consensus 929 ~---~~-~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1004 (1449)
. .. .++.+||++|++.+++.+||+||+.+... . ....++.++++++.++|.+..+..++ .||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~-----~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 144 (510)
T PRK15439 77 RLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--K-----RQASMQKMKQLLAALGCQLDLDSSAG-----SLEVA 144 (510)
T ss_pred CCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--c-----chHHHHHHHHHHHHcCCCccccCChh-----hCCHH
Confidence 2 11 23468999999999999999999987421 1 12334668899999999887777754 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1005 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1005 qrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+...+|++++|. +|++++.|
T Consensus 145 ~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~-~G~i~~~g 222 (510)
T PRK15439 145 DRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMR-DGTIALSG 222 (510)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEec
Confidence 999999999999999999999999999999999999999999888999999999986 4678899999998 58999999
Q ss_pred CCCC
Q 000517 1085 PLGK 1088 (1449)
Q Consensus 1085 ~~~~ 1088 (1449)
+..+
T Consensus 223 ~~~~ 226 (510)
T PRK15439 223 KTAD 226 (510)
T ss_pred ChHH
Confidence 8754
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=312.32 Aligned_cols=195 Identities=23% Similarity=0.387 Sum_probs=163.1
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC-CceEEEEcCCCccCCCCCHHHHHH
Q 000517 189 HVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTVRETVD 267 (1449)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1449)
|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999987 9999999988754322 357999999999999999999998
Q ss_pred HHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCChhh
Q 000517 268 FSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQ 347 (1449)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlSGGq 347 (1449)
++..... ... + ..+..++++++.+||++..++.+.+ |||||
T Consensus 93 ~~~~~~~-~~~--------~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~ 133 (211)
T cd03298 93 LGLSPGL-KLT--------A-------------------------EDRQAIEVALARVGLAGLEKRLPGE-----LSGGE 133 (211)
T ss_pred ccccccc-Ccc--------H-------------------------HHHHHHHHHHHHcCCHHHHhCCccc-----CCHHH
Confidence 7532110 000 0 0011346688999998877877765 99999
Q ss_pred hhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEEEec
Q 000517 348 KKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHG 426 (1449)
Q Consensus 348 rkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv~~G 426 (1449)
|||++||++++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++ +|...++.+++|++++|++|+++..|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMV-THQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999999999876446676665 55667888999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=318.95 Aligned_cols=221 Identities=24% Similarity=0.355 Sum_probs=173.7
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|+++.++ ++.+|+|||+++++||++||+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 366777766442 2459999999999999999999999999999999999621123589999999875
Q ss_pred cc---ccccc-eEEEEccCCCCCCCCCHHHHHHHHHHhccC----CCCChHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000517 928 VQ---ETFAR-VSGYCEQTDIHSPNITVEESVIFSAWLRLA----PEINSKTKAEFVNEVLETIELD-AIKDSLVGIPGV 998 (1449)
Q Consensus 928 ~~---~~~~~-~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~----~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 998 (1449)
.. ...++ .++|++|++.+++.+|+.+++.+....... .+.......+.+.++++.+++. +..++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 32 12222 478999999999999999998775432110 1111222345678899999997 35555542
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHh-cCeEEEEecC
Q 000517 999 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEA-FDELILLKTG 1077 (1449)
Q Consensus 999 ~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~-~d~~~~l~~g 1077 (1449)
.+||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||++||+++. +... +|++++|. +
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~-~ 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQ-N 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEe-C
Confidence 2499999999999999999999999999999999999999999999998779999999999763 4444 79999997 5
Q ss_pred cEEEEecCCC
Q 000517 1078 GRIIYCGPLG 1087 (1449)
Q Consensus 1078 G~~v~~G~~~ 1087 (1449)
|++++.|+.+
T Consensus 228 G~i~~~~~~~ 237 (252)
T CHL00131 228 GKIIKTGDAE 237 (252)
T ss_pred CEEEEecChh
Confidence 8999999863
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=318.32 Aligned_cols=208 Identities=23% Similarity=0.354 Sum_probs=166.2
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCeeeEEEECCccCCC--CC---CCceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS--LKVTGEVSYNGYKLEE--FV---PPKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~--~~---~~~~~~yv~Q~d~~~ 257 (1449)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ ...+|+|+++|+++.. .. .++.++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 5899999999999999999999999999999999999862 1138999999998752 11 235799999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc----cccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV----CADT 333 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~dt 333 (1449)
+.+||+||+.++....+..... ++ .+..++++++.+||.. ..++
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~--------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 145 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSK--------KE------------------------LDERVEWALKKAALWDEVKDRLND 145 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCH--------HH------------------------HHHHHHHHHHHcCCccchhhhhcc
Confidence 9999999998875432110000 00 0112455777888742 3444
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.++ .||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++. |..+++.+++|+
T Consensus 146 ~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~s-H~~~~~~~~~d~ 217 (253)
T PRK14267 146 YPS-----NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVT-HSPAQAARVSDY 217 (253)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEE-CCHHHHHhhCCE
Confidence 444 4999999999999999999999999999999999999999999999864 46666655 556678899999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000517 414 IILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~ 432 (1449)
|++|++|++++.|+.+++.
T Consensus 218 i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 218 VAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=322.98 Aligned_cols=215 Identities=22% Similarity=0.260 Sum_probs=171.9
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCC--C-CeeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT--S-GYVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~--~-~~~~G~I~i~G 924 (1449)
.+.++|+++.++ +..+|+|+|++|++||++||+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 467788876542 2358999999999999999999999999999999999754 1 12589999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc----ccccccccC
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD----AIKDSLVGI 995 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 995 (1449)
.+... ..+++.++|++|++.+++ .|++||+.+....+. ....+..++.+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87531 234667999999988877 599999988653321 111222345567777777542 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ .+.+.+|++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999865 799999999986 4677899999997
Q ss_pred cCcEEEEecCC
Q 000517 1076 TGGRIIYCGPL 1086 (1449)
Q Consensus 1076 ~gG~~v~~G~~ 1086 (1449)
+|++++.|+.
T Consensus 241 -~G~i~~~g~~ 250 (271)
T PRK14238 241 -NGYVNEYDDT 250 (271)
T ss_pred -CCEEEEeCCH
Confidence 5899999875
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=317.75 Aligned_cols=203 Identities=24% Similarity=0.335 Sum_probs=167.7
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCC------C---CCCceEEEEcCCCc
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE------F---VPPKTSAYISQNDL 255 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~------~---~~~~~~~yv~Q~d~ 255 (1449)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 5899999999999999999999999999999999999987 9999999987631 0 11356899999999
Q ss_pred cCCCCCHHHHHHHH-HHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccc
Q 000517 256 HIAEMTVRETVDFS-ARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTM 334 (1449)
Q Consensus 256 ~~~~lTV~E~l~f~-~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~ 334 (1449)
+++.+||+||+.+. ....+.. ..+ ....++.+++.+||+...++.
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLS----------KDQ------------------------ALARAEKLLERLRLKPYADRF 138 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhhCC
Confidence 99999999999753 2221110 000 011246678899998877777
Q ss_pred ccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeE
Q 000517 335 VGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDI 414 (1449)
Q Consensus 335 vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v 414 (1449)
+++ ||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.+ .++|++++. |...++.+++|++
T Consensus 139 ~~~-----LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~s-h~~~~~~~~~d~i 211 (242)
T PRK11124 139 PLH-----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVT-HEVEVARKTASRV 211 (242)
T ss_pred hhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEe-CCHHHHHHhcCEE
Confidence 765 999999999999999999999999999999999999999999999864 467766655 5556788899999
Q ss_pred EEEeCCeEEEecChhhH
Q 000517 415 ILMAEGKIVYHGPQDHV 431 (1449)
Q Consensus 415 ~lL~~G~iv~~G~~~~~ 431 (1449)
++|.+|++++.|+.+++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999987764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=348.16 Aligned_cols=123 Identities=28% Similarity=0.390 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCCEEE
Q 000517 948 NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI-KDSLVGIPGVNGLSTEQRKRLTIAVELVA---NPSIIF 1023 (1449)
Q Consensus 948 ~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~---~p~ill 1023 (1449)
++||.|.+.|...+. .+ ....++++.+||... .+..+ +.||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 478888888765432 11 124578889999753 45443 4799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe-----cCcEEEEecCC
Q 000517 1024 MDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK-----TGGRIIYCGPL 1086 (1449)
Q Consensus 1024 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~-----~gG~~v~~G~~ 1086 (1449)
|||||+|||+.+...+++.|+++.+.|.|||+++|++. ....+|+++.|. ++|++++.|++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999975 346799999993 47999999986
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=321.59 Aligned_cols=208 Identities=24% Similarity=0.379 Sum_probs=171.0
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1449)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++..++.+|
T Consensus 21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc
Confidence 5899999999999999999999999999999999999987 9999999988754322 346899999998888999
Q ss_pred HHHHHHHHHHcc-CCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 262 VRETVDFSARCQ-GVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 262 V~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
|+||+.++..-. ...... + + ..+..++.+++.+||++..++.+.+
T Consensus 98 v~~~~~~~~~~~~~~~~~~----------------~--~-------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 143 (265)
T PRK10253 98 VQELVARGRYPHQPLFTRW----------------R--K-------------EDEEAVTKAMQATGITHLADQSVDT--- 143 (265)
T ss_pred HHHHHHhCcccccccccCC----------------C--H-------------HHHHHHHHHHHHcCCHHHhcCCccc---
Confidence 999998742100 000000 0 0 0011346688999998777777765
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++. |...++.+++|++++|++|
T Consensus 144 --LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~t-H~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 144 --LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVL-HDLNQACRYASHLIALREG 220 (265)
T ss_pred --CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999998764466766655 5566889999999999999
Q ss_pred eEEEecChhhHH
Q 000517 421 KIVYHGPQDHVL 432 (1449)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1449)
++++.|+.+++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=316.37 Aligned_cols=206 Identities=22% Similarity=0.271 Sum_probs=166.0
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC-CeeeEEEECCccCCCCCC-CceEEEEcCCCc--cCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL-KVTGEVSYNGYKLEEFVP-PKTSAYISQNDL--HIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~-~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~l 260 (1449)
++|+|+|+++++||+++|+||||||||||+++|+|.++|.. ..+|+|.++|+++..... ++.++||+|++. +.+.+
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 48999999999999999999999999999999999998810 028999999988753322 356999999974 44668
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc---cccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV---CADTMVGN 337 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~---~~dt~vg~ 337 (1449)
|+.+++.+.+...+... .+..++.+++.+||.+ ..++.+++
T Consensus 97 ~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~~~~ 140 (254)
T PRK10418 97 TMHTHARETCLALGKPA------------------------------------DDATLTAALEAVGLENAARVLKLYPFE 140 (254)
T ss_pred cHHHHHHHHHHHcCCCh------------------------------------HHHHHHHHHHHcCCCChhhhhhcCCcc
Confidence 99999876543221100 0012456788899976 34565554
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL 417 (1449)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|++++. |..+++.+.+|++++|
T Consensus 141 -----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~s-H~~~~~~~~~d~v~~l 214 (254)
T PRK10418 141 -----MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVT-HDMGVVARLADDVAVM 214 (254)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEe-cCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998765466766655 5566788899999999
Q ss_pred eCCeEEEecChhhHH
Q 000517 418 AEGKIVYHGPQDHVL 432 (1449)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1449)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 215 SHGRIVEQGDVETLF 229 (254)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999988764
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=321.58 Aligned_cols=196 Identities=24% Similarity=0.420 Sum_probs=155.0
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---ccccceEEEEccCCCCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNIT 950 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lT 950 (1449)
+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++.+++ .|
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RS 91 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-ch
Confidence 4599999999999999999999999999999999998654 48999999986432 234667999999987764 79
Q ss_pred HHHHHHHHHHhccCCCCChHHHH-----HHHHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000517 951 VEESVIFSAWLRLAPEINSKTKA-----EFVNEVLETI--ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIF 1023 (1449)
Q Consensus 951 v~e~l~f~~~lr~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~ill 1023 (1449)
|.||+.+... ........ ...++.++.+ ++....+.. +..|||||||||+|||+|+.+|++|+
T Consensus 92 v~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lll 161 (237)
T cd03252 92 IRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GAGLSGGQRQRIAIARALIHNPRILI 161 (237)
T ss_pred HHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 9999976321 11111111 0112333333 333333333 34799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1024 MDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1024 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|||||+|||+.+...+.+.|++++ +|+|||+++|+++ ++ ..+|++++|. +|++++.|+.
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~-~G~i~~~~~~ 220 (237)
T cd03252 162 FDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVME-KGRIVEQGSH 220 (237)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEE-CCEEEEEcCH
Confidence 999999999999999999999986 4899999999986 34 5699999998 5899999875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=362.50 Aligned_cols=210 Identities=32% Similarity=0.506 Sum_probs=176.0
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++|+|++|.++. ++.+|+|+|++++|||++||+||||||||||++.|.|..++ .+|+|.+||.++
T Consensus 328 ~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~dI 393 (567)
T COG1132 328 SIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGIDI 393 (567)
T ss_pred eEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEeh
Confidence 5899999987752 35699999999999999999999999999999999997665 589999999886
Q ss_pred c---cccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcC-------CcccccccccCCC
Q 000517 928 V---QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-------LDAIKDSLVGIPG 997 (1449)
Q Consensus 928 ~---~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~ 997 (1449)
. ...+|+.++||+|++.+|. -||+||+.++. ++.++ +.++++++..+ +.+..|+.+|..|
T Consensus 394 ~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~----eei~~a~k~a~~~d~I~~lp~g~dt~vge~G 463 (567)
T COG1132 394 RDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATD----EEIEEALKLANAHEFIANLPDGYDTIVGERG 463 (567)
T ss_pred hhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCH----HHHHHHHHHhChHHHHHhCcccccceecCCC
Confidence 4 3567889999999998886 89999998852 22222 23344444332 3345789999655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
. .||||||||++||||++++|+||+||||||+||+.+...|++.++++. +|+|+++++|+++ ....+|++++|+ +
T Consensus 464 ~-~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~-~ 538 (567)
T COG1132 464 V-NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLD-N 538 (567)
T ss_pred c-cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEE-C
Confidence 4 699999999999999999999999999999999999999999999876 5789999999986 345699999998 5
Q ss_pred cEEEEecCC
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~v~~G~~ 1086 (1449)
|++++.|+.
T Consensus 539 G~i~e~G~h 547 (567)
T COG1132 539 GRIVERGTH 547 (567)
T ss_pred CEEEEecCH
Confidence 899999986
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=316.29 Aligned_cols=209 Identities=23% Similarity=0.352 Sum_probs=169.0
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLA-------------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEee-------------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEc
Confidence 36677777654 234699999999999999999999999999999999997654 589999999764
Q ss_pred cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 000517 928 VQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-AIKDSLVGIPGVNGLST 1003 (1449)
Q Consensus 928 ~~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSg 1003 (1449)
.. ..+++.++|++|++.+++ .|++||+.+....+.. ....+.++++++.++|. ...++.+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ-----QPDPAIFLDDLERFALPDTILTKNI-----AELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC-----ChHHHHHHHHHHHcCCChHHhcCCc-----ccCCH
Confidence 32 234567999999988876 5999999875443211 11234577899999995 4556554 37999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEE
Q 000517 1004 EQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIY 1082 (1449)
Q Consensus 1004 GqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~ 1082 (1449)
|||||++||++|+.+|++++|||||+|||+.+...+.+.|++++++ |.|||+++|+++. + +.+|++++|.+.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHh
Confidence 9999999999999999999999999999999999999999998764 8999999999863 4 57999999964444444
Q ss_pred ec
Q 000517 1083 CG 1084 (1449)
Q Consensus 1083 ~G 1084 (1449)
.|
T Consensus 219 ~~ 220 (225)
T PRK10247 219 EA 220 (225)
T ss_pred hh
Confidence 44
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=360.47 Aligned_cols=212 Identities=23% Similarity=0.347 Sum_probs=177.8
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++++|++|.++. +++.+|+|+|++|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 407 (582)
T PRK11176 341 DIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHDL 407 (582)
T ss_pred eEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEEh
Confidence 5889999987642 124599999999999999999999999999999999998765 589999999885
Q ss_pred cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000517 928 VQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-------IKDSLVGIPG 997 (1449)
Q Consensus 928 ~~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 997 (1449)
.+ ..+++.++||+|++.+++ -|++||+.++. +.+. .++.++++++..++.+ -.|+.+|..|
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~----~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g 478 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQY----SREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478 (582)
T ss_pred hhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCC----CHHHHHHHHHHhCcHHHHHhcccccCceeCCCC
Confidence 43 457788999999998876 69999997641 1112 2345667777776543 3578888665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
+.||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|++||+++ ..+.+|++++|+ +
T Consensus 479 -~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~-~ 553 (582)
T PRK11176 479 -VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVE-D 553 (582)
T ss_pred -CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEE-C
Confidence 4699999999999999999999999999999999999999999999874 4799999999974 578899999998 5
Q ss_pred cEEEEecCC
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~v~~G~~ 1086 (1449)
|++++.|+.
T Consensus 554 g~i~e~g~~ 562 (582)
T PRK11176 554 GEIVERGTH 562 (582)
T ss_pred CEEEEeCCH
Confidence 899999985
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=358.84 Aligned_cols=206 Identities=22% Similarity=0.322 Sum_probs=170.8
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1449)
++|+|+|++++|||.++|+|+||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.+|+. |
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-h
Confidence 5999999999999999999999999999999999999998 9999999999876653 5789999999988775 9
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
++|||.++.. . +.++..+++...+. ++.++. |++..||.+|+. ..
T Consensus 431 i~~NI~~~~~---~-----------------------~d~~i~~a~~~~gl------~~~i~~--lp~Gldt~i~e~-g~ 475 (592)
T PRK10790 431 FLANVTLGRD---I-----------------------SEEQVWQALETVQL------AELARS--LPDGLYTPLGEQ-GN 475 (592)
T ss_pred HHHHHHhCCC---C-----------------------CHHHHHHHHHHcCc------HHHHHh--ccccccccccCC-CC
Confidence 9999988520 0 11112222222222 222332 677889999874 34
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
.||||||||++|||||+.+|++++||||||+||+.++..|.+.|+++.. ++|+|+..|++ +....||+|++|++|+
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRGQ 551 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999998753 58888877775 5677899999999999
Q ss_pred EEEecChhhHHH
Q 000517 422 IVYHGPQDHVLA 433 (1449)
Q Consensus 422 iv~~G~~~~~~~ 433 (1449)
++..|+++++.+
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999999864
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=316.35 Aligned_cols=212 Identities=26% Similarity=0.320 Sum_probs=167.8
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCCCeeeEEEECCccCCCCCC----CceEEEEcCCCccCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNL--DPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIA 258 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 258 (1449)
.+|+|+|+.+++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|+++..... +..++|++|++.+++
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEIP 90 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeeccccccC
Confidence 5899999999999999999999999999999999995 566 9999999988754322 234899999999999
Q ss_pred CCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC-ccccccccc
Q 000517 259 EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD-VCADTMVGN 337 (1449)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg~ 337 (1449)
.+|++|++.+............ ..+.+. ....++.+++.+||+ ...++.++.
T Consensus 91 ~~t~~~~~~~~~~~~~~~~~~~----------------~~~~~~-----------~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (243)
T TIGR01978 91 GVSNLEFLRSALNARRSARGEE----------------PLDLLD-----------FLKLLKAKLALLGMDEEFLNRSVNE 143 (243)
T ss_pred CcCHHHHHHHHHHHhhcccccc----------------cccHHH-----------HHHHHHHHHHHcCCchhhccccccc
Confidence 9999999988654221000000 000000 012356788999997 456666541
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhh-cCeEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL-FDDIIL 416 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~-fD~v~l 416 (1449)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|++.| ..+++... +|++++
T Consensus 144 ----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH-~~~~~~~~~~d~i~~ 217 (243)
T TIGR01978 144 ----GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITH-YQRLLNYIKPDYVHV 217 (243)
T ss_pred ----CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEe-cHHHHHhhcCCeEEE
Confidence 3999999999999999999999999999999999999999999999865 4667776655 45677777 899999
Q ss_pred EeCCeEEEecChhhHH
Q 000517 417 MAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (1449)
|++|++++.|+++++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 218 LLDGRIVKSGDVELAK 233 (243)
T ss_pred EeCCEEEEecCHHHhc
Confidence 9999999999987654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=317.20 Aligned_cols=203 Identities=25% Similarity=0.358 Sum_probs=162.1
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCCCeeeEEEECCccCCCC-----CCCceEEEEcCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD-----PSLKVTGEVSYNGYKLEEF-----VPPKTSAYISQND 254 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~-----~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d 254 (1449)
.+|+|+|+.+++|++++|+|||||||||||++|+|..+ |+ +|+|.++|+++... ..++.++|++|++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 96 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV---EGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCC---ceEEEECCEEccccccCHHHHhhcEEEEecCC
Confidence 48999999999999999999999999999999999864 34 89999999887531 1145799999998
Q ss_pred ccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc----c
Q 000517 255 LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV----C 330 (1449)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~----~ 330 (1449)
.+++ .||+||+.++....+.... .+ .+..++.+++.+||.+ .
T Consensus 97 ~~~~-~tv~enl~~~~~~~~~~~~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~ 142 (253)
T PRK14242 97 NPFP-KSIFENVAYGLRVNGVKDK---------AY------------------------LAERVERSLRHAALWDEVKDR 142 (253)
T ss_pred CCCc-CcHHHHHHHHHHHcCCCCH---------HH------------------------HHHHHHHHHHHcCCchhhhHH
Confidence 8777 5999999987543221100 00 0112345677778743 2
Q ss_pred ccccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhh
Q 000517 331 ADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL 410 (1449)
Q Consensus 331 ~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~ 410 (1449)
.++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++. |...++.++
T Consensus 143 ~~~~~~-----~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~t-H~~~~~~~~ 214 (253)
T PRK14242 143 LHESAL-----GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--RYTIIIVT-HNMQQAARV 214 (253)
T ss_pred hhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCeEEEEE-ecHHHHHHh
Confidence 344444 4999999999999999999999999999999999999999999999843 56666654 556678899
Q ss_pred cCeEEEEeCCeEEEecChhhHH
Q 000517 411 FDDIILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 411 fD~v~lL~~G~iv~~G~~~~~~ 432 (1449)
+|+|++|++|+++..|+.+++.
T Consensus 215 ~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 215 SDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999987763
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=321.33 Aligned_cols=215 Identities=22% Similarity=0.319 Sum_probs=170.9
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC--------CCceEEEEcCCCcc
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV--------PPKTSAYISQNDLH 256 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~--------~~~~~~yv~Q~d~~ 256 (1449)
++|+|+|+.+++||+++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++.+
T Consensus 18 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (262)
T PRK09984 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNL 97 (262)
T ss_pred EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccccc
Confidence 5899999999999999999999999999999999999875223699999998764321 13468999999988
Q ss_pred CCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccc
Q 000517 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVG 336 (1449)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 336 (1449)
++.+||+||+.+....... .. .+. .+.. .. +.+..++.+++.+||++..|+.++
T Consensus 98 ~~~~tv~e~l~~~~~~~~~--~~-------~~~--~~~~-~~--------------~~~~~~~~~l~~~~l~~~~~~~~~ 151 (262)
T PRK09984 98 VNRLSVLENVLIGALGSTP--FW-------RTC--FSWF-TR--------------EQKQRALQALTRVGMVHFAHQRVS 151 (262)
T ss_pred ccCCcHHHHHHhhhccccc--ch-------hhh--cccc-cH--------------HHHHHHHHHHHHcCCHHHHhCCcc
Confidence 9999999999875421000 00 000 0000 00 011235678999999887788776
Q ss_pred ccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEE
Q 000517 337 NAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416 (1449)
Q Consensus 337 ~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~l 416 (1449)
+ |||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++. |..+++.+++|+|++
T Consensus 152 ~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~t-H~~~~~~~~~d~i~~ 225 (262)
T PRK09984 152 T-----LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTL-HQVDYALRYCERIVA 225 (262)
T ss_pred c-----cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEE
Confidence 5 9999999999999999999999999999999999999999999998765466766665 556678899999999
Q ss_pred EeCCeEEEecChhhH
Q 000517 417 MAEGKIVYHGPQDHV 431 (1449)
Q Consensus 417 L~~G~iv~~G~~~~~ 431 (1449)
|++|++++.|+++++
T Consensus 226 l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 226 LRQGHVFYDGSSQQF 240 (262)
T ss_pred EECCEEEEeCCHHHh
Confidence 999999999988764
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=316.38 Aligned_cols=194 Identities=20% Similarity=0.304 Sum_probs=165.4
Q ss_pred ccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCCCCCCH
Q 000517 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITV 951 (1449)
Q Consensus 872 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv 951 (1449)
.++.+|+++|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|. ++++.|+..+.+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~I~~~g~----------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGKVDRNGE----------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCE----------EeEEecccCCCCCCcH
Confidence 446799999999999999999999999999999999998665 4899999984 3567777767788999
Q ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000517 952 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031 (1449)
Q Consensus 952 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgL 1031 (1449)
.||+.+..... ....+...+.++++++.++|.+..+..++ .||||||||++||++|+.+|++|+|||||+||
T Consensus 103 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 103 IENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVK-----KYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 99998764432 12234445567788999999887776643 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1032 DARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1032 D~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
|+.+...+.+.|+++++.|+|||+++|++. ++.+.+|++++|. +|+++..|+.+
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~-~G~i~~~g~~~ 228 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIE-GGKLKDYGELD 228 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEE-CCEEEEeCCHH
Confidence 999999999999999777999999999975 5677899999997 58999998864
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=320.98 Aligned_cols=204 Identities=29% Similarity=0.401 Sum_probs=169.0
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC-----CCceEEEEcCCCc-cCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV-----PPKTSAYISQNDL-HIA 258 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~~ 258 (1449)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|+++.... .++.++|++|++. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 5899999999999999999999999999999999999987 999999998874211 1357999999863 344
Q ss_pred CCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 259 EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
.+||+||+.++....+.. +.+ ....+..+++.+||.+..++.+++
T Consensus 93 ~~tv~e~i~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~~- 137 (275)
T PRK13639 93 APTVEEDVAFGPLNLGLS----------KEE------------------------VEKRVKEALKAVGMEGFENKPPHH- 137 (275)
T ss_pred cccHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCchhhcCChhh-
Confidence 579999998764321110 000 011245688999999888888776
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.+ .+.|++++ +|..+++.++||++++|+
T Consensus 138 ----LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~v-tH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 138 ----LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIIS-THDVDLVPVYADKVYVMS 211 (275)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEE-ecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999875 36676665 455678888999999999
Q ss_pred CCeEEEecChhhHH
Q 000517 419 EGKIVYHGPQDHVL 432 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1449)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998874
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=318.05 Aligned_cols=204 Identities=24% Similarity=0.326 Sum_probs=165.8
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC----eeEEEEEEcCccCc---cccccceEEEEccCCCC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG----YVEGEIKISGYPKV---QETFARVSGYCEQTDIH 945 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~----~~~G~I~i~G~~~~---~~~~~~~~gyv~Q~d~~ 945 (1449)
++.+|+|+||++++||+++|+|+||||||||+++|+|...+. .+.|++.++|.+.. ...+++.++|++|++.+
T Consensus 22 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~ 101 (257)
T PRK14246 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNP 101 (257)
T ss_pred CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCcc
Confidence 456999999999999999999999999999999999976542 12355556565532 12356779999999999
Q ss_pred CCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000517 946 SPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSI 1021 (1449)
Q Consensus 946 ~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~i 1021 (1449)
++.+|++||+.+...... ....++..+.++++++.+++.+ ..+.. +..||+|||||++|||+|+.+|++
T Consensus 102 ~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~LS~G~~qrl~laral~~~P~l 174 (257)
T PRK14246 102 FPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP-----ASQLSGGQQQRLTIARALALKPKV 174 (257)
T ss_pred CCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC-----cccCCHHHHHHHHHHHHHHcCCCE
Confidence 899999999988643321 1122344466889999999964 33333 347999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1022 IFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1022 llLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
++|||||+|||..+...+.+.|+++++ ++|||++||++. .+...+|++++|. +|+++..|+.
T Consensus 175 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~-~g~i~~~g~~ 236 (257)
T PRK14246 175 LLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLY-NGELVEWGSS 236 (257)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999999999999864 799999999986 4668899999997 5899999875
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=351.15 Aligned_cols=216 Identities=28% Similarity=0.367 Sum_probs=178.8
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
++++|+++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i~ 69 (501)
T PRK11288 5 LSFDGIGKTF-------------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEMR 69 (501)
T ss_pred EEEeeeEEEE-------------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 5667776654 234699999999999999999999999999999999998654 5899999998753
Q ss_pred c----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000517 929 Q----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTE 1004 (1449)
Q Consensus 929 ~----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 1004 (1449)
. ..+++.+||++|++.+++.+||.||+.+....+........+.++.++++++.++|.+..+..++ .||||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 144 (501)
T PRK11288 70 FASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK-----YLSIG 144 (501)
T ss_pred CCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchh-----hCCHH
Confidence 2 22456799999999889999999999885321111111233445678899999999877676654 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1005 QRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1005 qrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||++||++. ++...+|++++|. +|+++..+
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~-~G~i~~~~ 222 (501)
T PRK11288 145 QRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFK-DGRYVATF 222 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeec
Confidence 999999999999999999999999999999999999999999878999999999986 5678899999998 58998776
Q ss_pred CC
Q 000517 1085 PL 1086 (1449)
Q Consensus 1085 ~~ 1086 (1449)
+.
T Consensus 223 ~~ 224 (501)
T PRK11288 223 DD 224 (501)
T ss_pred Cc
Confidence 53
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=320.53 Aligned_cols=207 Identities=24% Similarity=0.284 Sum_probs=169.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCc--cCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDL--HIA 258 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 258 (1449)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999997 9999999988753211 346999999864 567
Q ss_pred CCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC-ccccccccc
Q 000517 259 EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD-VCADTMVGN 337 (1449)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~-~~~dt~vg~ 337 (1449)
.+||.|++.+..+...... ..+ ....++.+++.+||. +..++.+.+
T Consensus 103 ~~tv~~~l~~~~~~~~~~~---------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~~ 149 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLE---------PEQ------------------------REKQIIETLRQVGLLPDHASYYPHM 149 (267)
T ss_pred chhHHHHHHHHHHhccCCC---------HHH------------------------HHHHHHHHHHHcCCChHHHhcCchh
Confidence 8899999988654321000 000 011246688999994 566666654
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL 417 (1449)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++. |..+++..+||++++|
T Consensus 150 -----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivs-H~~~~~~~~~d~i~~l 223 (267)
T PRK15112 150 -----LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVT-QHLGMMKHISDQVLVM 223 (267)
T ss_pred -----cCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEe-CCHHHHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999998764466766654 5567888899999999
Q ss_pred eCCeEEEecChhhHH
Q 000517 418 AEGKIVYHGPQDHVL 432 (1449)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1449)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999987764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=326.76 Aligned_cols=214 Identities=19% Similarity=0.233 Sum_probs=169.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC-CeeeEEEECCccCCCCCC-------CceEEEEcCCCc
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL-KVTGEVSYNGYKLEEFVP-------PKTSAYISQNDL 255 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 255 (1449)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++.. ..+|+|.++|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 458999999999999999999999999999999999987421 138999999998765332 246999999875
Q ss_pred --cCCCCCHHHHHHHHHHccCC-CCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcc--
Q 000517 256 --HIAEMTVRETVDFSARCQGV-GSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVC-- 330 (1449)
Q Consensus 256 --~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~-- 330 (1449)
+.+.+||.+++.+....... +... .+. + +....+.++|+.+||.+.
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~------~~~------------~-----------~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWW------QRF------------G-----------WRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccccc------ccH------------H-----------HHHHHHHHHHHHCCCCChHH
Confidence 67889999999764321100 0000 000 0 001235678999999743
Q ss_pred -ccccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHh
Q 000517 331 -ADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFD 409 (1449)
Q Consensus 331 -~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~ 409 (1449)
.++.+. .|||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+..+.|+|+ ++|+...+.+
T Consensus 151 ~~~~~p~-----~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~-itHdl~~v~~ 224 (330)
T PRK15093 151 AMRSFPY-----ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILL-ISHDLQMLSQ 224 (330)
T ss_pred HHhCCch-----hCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE-EECCHHHHHH
Confidence 355554 499999999999999999999999999999999999999999999997654666555 5677888989
Q ss_pred hcCeEEEEeCCeEEEecChhhHH
Q 000517 410 LFDDIILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 410 ~fD~v~lL~~G~iv~~G~~~~~~ 432 (1449)
++|+|++|.+|+|++.|+.+++.
T Consensus 225 ~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 225 WADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred hCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999988874
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=330.00 Aligned_cols=217 Identities=26% Similarity=0.447 Sum_probs=172.1
Q ss_pred cccCccccccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEE
Q 000517 173 KLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAY 249 (1449)
Q Consensus 173 ~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~y 249 (1449)
..+.|+.+ +.++|+|+|+++++||.+||+|++|||||||++.|+|-++|+ +|+|+.||.++..... ++.+++
T Consensus 342 vsF~y~~~--~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~v 416 (573)
T COG4987 342 VSFTYPGQ--QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISV 416 (573)
T ss_pred ceeecCCC--ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhh
Confidence 34445433 346999999999999999999999999999999999999998 9999999999877655 467899
Q ss_pred EcCCCccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc
Q 000517 250 ISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV 329 (1449)
Q Consensus 250 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~ 329 (1449)
++|. .|+..-|+|+||.++. |+...++..++...-|+ ++.++ +.++
T Consensus 417 l~Qr-~hlF~~Tlr~NL~lA~-------------------------~~AsDEel~~aL~qvgL------~~l~~--~~p~ 462 (573)
T COG4987 417 LTQR-VHLFSGTLRDNLRLAN-------------------------PDASDEELWAALQQVGL------EKLLE--SAPD 462 (573)
T ss_pred hccc-hHHHHHHHHHHHhhcC-------------------------CCCCHHHHHHHHHHcCH------HHHHH--hChh
Confidence 9995 4566679999998753 12121222222211111 11121 2455
Q ss_pred cccccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHh
Q 000517 330 CADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFD 409 (1449)
Q Consensus 330 ~~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~ 409 (1449)
..||.+|+. .++||||||||++|||+|++++++++|||||.|||+.|..++++.|.+-+ .++|+++..|+-. -.+
T Consensus 463 gl~t~lge~-G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~--~le 537 (573)
T COG4987 463 GLNTWLGEG-GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLR--GLE 537 (573)
T ss_pred hhhchhccC-CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEecccc--cHh
Confidence 778999975 56799999999999999999999999999999999999999999998755 4889988776644 347
Q ss_pred hcCeEEEEeCCeEEEecChhhHHH
Q 000517 410 LFDDIILMAEGKIVYHGPQDHVLA 433 (1449)
Q Consensus 410 ~fD~v~lL~~G~iv~~G~~~~~~~ 433 (1449)
.||+|++|++|+++.+|.+.+++.
T Consensus 538 ~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 538 RMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred hcCEEEEEECCeeeecCCHHhhhc
Confidence 899999999999999999999874
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=311.71 Aligned_cols=194 Identities=29% Similarity=0.443 Sum_probs=160.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC---CCceEEEEcCCCc-cCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV---PPKTSAYISQNDL-HIAE 259 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (1449)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 45999999999999999999999999999999999999987 999999998875432 1357899999864 4678
Q ss_pred CCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccc
Q 000517 260 MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAM 339 (1449)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~ 339 (1449)
+||+||+.++....+.. ..+ .+..++.+++.+||++..++.+++
T Consensus 91 ~t~~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-- 134 (211)
T cd03225 91 PTVEEEVAFGLENLGLP----------EEE------------------------IEERVEEALELVGLEGLRDRSPFT-- 134 (211)
T ss_pred CcHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCcHhhhcCCccc--
Confidence 99999998865322110 000 011245678899998777777765
Q ss_pred cccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeC
Q 000517 340 RRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419 (1449)
Q Consensus 340 ~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~ 419 (1449)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. +.|+|++. |..+++..+||+|++|++
T Consensus 135 ---LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~s-H~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 135 ---LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVT-HDLDLLLELADRVIVLED 209 (211)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEe-CCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999998764 66766654 556788889999999999
Q ss_pred Ce
Q 000517 420 GK 421 (1449)
Q Consensus 420 G~ 421 (1449)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=318.39 Aligned_cols=202 Identities=25% Similarity=0.345 Sum_probs=164.5
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCcc-----Ccc---c----cccceEEEEcc
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP-----KVQ---E----TFARVSGYCEQ 941 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~-----~~~---~----~~~~~~gyv~Q 941 (1449)
..+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+ ... . ..++.++|++|
T Consensus 16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q 93 (253)
T TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ 93 (253)
T ss_pred ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccccccccccCCHHHHHHhhhcceEEEEe
Confidence 4589999999999999999999999999999999998665 58999999975 321 1 12356899999
Q ss_pred CCC--CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000517 942 TDI--HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-IKDSLVGIPGVNGLSTEQRKRLTIAVELVAN 1018 (1449)
Q Consensus 942 ~d~--~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~ 1018 (1449)
++. ..+.+|+.||+.+..... .. .......+.++++++.+++.+ ..++.+ +.||||||||++|||||+.+
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~LSgG~~qrv~laral~~~ 166 (253)
T TIGR02323 94 NPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDLP-----RAFSGGMQQRLQIARNLVTR 166 (253)
T ss_pred CcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcCc-----hhcCHHHHHHHHHHHHHhcC
Confidence 974 446679999987543211 11 111233467889999999963 556554 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1019 PSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1019 p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.+.+|++++|. +|++++.|+.
T Consensus 167 p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~-~G~i~~~~~~ 233 (253)
T TIGR02323 167 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQ-QGRVVESGLT 233 (253)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEECCH
Confidence 9999999999999999999999999998754 899999999976 5667899999997 5899999875
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=359.39 Aligned_cols=209 Identities=25% Similarity=0.385 Sum_probs=177.9
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++++|++|.++. +..+|+|+|++++|||.+||+|+||||||||+++|+|..+| .+|+|.+||.+.
T Consensus 340 ~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i 405 (592)
T PRK10790 340 RIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRPL 405 (592)
T ss_pred eEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEh
Confidence 5889999987641 13599999999999999999999999999999999998766 489999999876
Q ss_pred c---cccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000517 928 V---QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-------IKDSLVGIPG 997 (1449)
Q Consensus 928 ~---~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 997 (1449)
. ...+++.++||+|++.+++. |++|||.++. +. .++.++++++.+|+.+ -.|+.+|..|
T Consensus 406 ~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~----~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g 474 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DI----SEEQVWQALETVQLAELARSLPDGLYTPLGEQG 474 (592)
T ss_pred hhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CC----CHHHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 4 34678899999999999875 9999998742 11 1345777888888664 3467777654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
..||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++.+ ++|+|+++|+++ ....+|++++|+ +
T Consensus 475 -~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~-~ 549 (592)
T PRK10790 475 -NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLH-R 549 (592)
T ss_pred -CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEE-C
Confidence 46999999999999999999999999999999999999999999999754 799999999984 567899999997 5
Q ss_pred cEEEEecCC
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~v~~G~~ 1086 (1449)
|+++..|+.
T Consensus 550 G~i~~~G~~ 558 (592)
T PRK10790 550 GQAVEQGTH 558 (592)
T ss_pred CEEEEEcCH
Confidence 999999985
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=311.12 Aligned_cols=194 Identities=23% Similarity=0.400 Sum_probs=161.5
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCC-----CCCceEEEEcCCCccCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF-----VPPKTSAYISQNDLHIAE 259 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~~ 259 (1449)
.+|+++|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 5899999999999999999999999999999999999987 99999999877421 114579999999988999
Q ss_pred CCHHHHHHHHHH-ccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccc
Q 000517 260 MTVRETVDFSAR-CQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNA 338 (1449)
Q Consensus 260 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~ 338 (1449)
+||+||+.++.. .++.. ..+ ....++.+++.+||++..++.+.+
T Consensus 91 ~t~~e~l~~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~- 135 (213)
T cd03262 91 LTVLENITLAPIKVKGMS----------KAE------------------------AEERALELLEKVGLADKADAYPAQ- 135 (213)
T ss_pred CcHHHHHHhHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCCHhHhhhCccc-
Confidence 999999988642 11100 000 011245678889998877777765
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++ +|...++.+++|++++|+
T Consensus 136 ----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~-sh~~~~~~~~~d~i~~l~ 209 (213)
T cd03262 136 ----LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVV-THEMGFAREVADRVIFMD 209 (213)
T ss_pred ----cCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEE-eCCHHHHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999999999876 46676665 566678889999999999
Q ss_pred CCeE
Q 000517 419 EGKI 422 (1449)
Q Consensus 419 ~G~i 422 (1449)
+|++
T Consensus 210 ~g~i 213 (213)
T cd03262 210 DGRI 213 (213)
T ss_pred CCcC
Confidence 9974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=319.16 Aligned_cols=207 Identities=26% Similarity=0.421 Sum_probs=169.7
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC---CCceEEEEcCCCccCCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV---PPKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 261 (1449)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|+..+++.+|
T Consensus 16 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (255)
T PRK11231 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGIT 92 (255)
T ss_pred EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCcc
Confidence 5899999999999999999999999999999999999987 999999998765432 2356999999988888899
Q ss_pred HHHHHHHHHHc-cCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 262 VRETVDFSARC-QGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 262 V~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
|.||+.++... ...... ... ..+..++.+++.+||++..++.+++
T Consensus 93 v~~~i~~~~~~~~~~~~~------~~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 138 (255)
T PRK11231 93 VRELVAYGRSPWLSLWGR------LSA-------------------------EDNARVNQAMEQTRINHLADRRLTD--- 138 (255)
T ss_pred HHHHHHhccchhhhhccC------CCH-------------------------HHHHHHHHHHHHcCCHHHHcCCccc---
Confidence 99999875310 000000 000 0011246678899998878887765
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++. |..+++.+++|++++|++|
T Consensus 139 --LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~t-H~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 139 --LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVL-HDLNQASRYCDHLVVLANG 214 (255)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEE-CCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999999999999999999865 466766655 5566888999999999999
Q ss_pred eEEEecChhhHH
Q 000517 421 KIVYHGPQDHVL 432 (1449)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1449)
+++..|+.+++.
T Consensus 215 ~i~~~~~~~~~~ 226 (255)
T PRK11231 215 HVMAQGTPEEVM 226 (255)
T ss_pred eEEEEcCHHHhc
Confidence 999999887763
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=310.83 Aligned_cols=185 Identities=28% Similarity=0.371 Sum_probs=156.6
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCCCCCCHHH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEE 953 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~e 953 (1449)
+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+......++.++|++|++.+++.+|+.|
T Consensus 15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 92 (207)
T PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAE 92 (207)
T ss_pred eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHH
Confidence 4699999999999999999999999999999999997654 58999999976432225667899999988888999999
Q ss_pred HHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000517 954 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 1033 (1449)
Q Consensus 954 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~ 1033 (1449)
|+.+....+. . .++.++++++.+||.+..+..++ .||||||||++||++|+.+|++|+|||||+|||+
T Consensus 93 ~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 160 (207)
T PRK13539 93 NLEFWAAFLG---G----EELDIAAALEAVGLAPLAHLPFG-----YLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160 (207)
T ss_pred HHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 9987543321 1 12347889999999877666644 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 1034 RAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 1034 ~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
.+...+++.|++++++|+|||+++|++. ++ .. |+++.+.
T Consensus 161 ~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~-~~-~~~~~~~ 199 (207)
T PRK13539 161 AAVALFAELIRAHLAQGGIVIAATHIPL-GL-PG-ARELDLG 199 (207)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCch-hh-cc-CcEEeec
Confidence 9999999999998878999999999975 34 33 8887764
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=320.11 Aligned_cols=214 Identities=21% Similarity=0.274 Sum_probs=171.8
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCC--C-eeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTS--G-YVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~--~-~~~G~I~i~G 924 (1449)
.+.++|++++++ +..+|+|+|++|++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 366777776542 24599999999999999999999999999999999996432 1 2579999999
Q ss_pred ccCc-----cccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccccC
Q 000517 925 YPKV-----QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLVGI 995 (1449)
Q Consensus 925 ~~~~-----~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 995 (1449)
.+.. ...+++.++|++|++.+++ .|+.||+.+....+. .. ...++.++++++.+++.+ ..+..
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 148 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQS--- 148 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcCC---
Confidence 8652 1234667999999988877 599999988654321 11 123355677788888743 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 149 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~ 224 (264)
T PRK14243 149 --GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFN 224 (264)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 347999999999999999999999999999999999999999999999875 589999999986 5788999999997
Q ss_pred c--------CcEEEEecCC
Q 000517 1076 T--------GGRIIYCGPL 1086 (1449)
Q Consensus 1076 ~--------gG~~v~~G~~ 1086 (1449)
+ .|++++.|+.
T Consensus 225 ~~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 225 VELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccccccCceEEEeCCH
Confidence 2 5899999975
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=319.17 Aligned_cols=204 Identities=25% Similarity=0.312 Sum_probs=169.1
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC---CCceEEEEcCCCc-cCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV---PPKTSAYISQNDL-HIAEM 260 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 260 (1449)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA 97 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccC
Confidence 5899999999999999999999999999999999999997 999999998875422 2457999999964 67789
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
||.||+.++....+.. +++ ....++.+++.+||.+..++.++.
T Consensus 98 tv~eni~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~--- 140 (277)
T PRK13642 98 TVEDDVAFGMENQGIP----------REE------------------------MIKRVDEALLAVNMLDFKTREPAR--- 140 (277)
T ss_pred CHHHHHHhhHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCHhHhhCCccc---
Confidence 9999998865322110 000 001246678889998777777655
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.| ..+++. .+|+|++|++|
T Consensus 141 --LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH-~~~~~~-~~d~i~~l~~G 216 (277)
T PRK13642 141 --LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITH-DLDEAA-SSDRILVMKAG 216 (277)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHH-hCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999987644677777654 455564 69999999999
Q ss_pred eEEEecChhhHH
Q 000517 421 KIVYHGPQDHVL 432 (1449)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1449)
+++..|+.+++.
T Consensus 217 ~i~~~g~~~~~~ 228 (277)
T PRK13642 217 EIIKEAAPSELF 228 (277)
T ss_pred EEEEeCCHHHHh
Confidence 999999988774
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=367.91 Aligned_cols=209 Identities=28% Similarity=0.413 Sum_probs=175.8
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++++|++|+++. .++.+|+|+|++|+|||.+||+|+||||||||+++|+|...+ .+|+|.+||.+.
T Consensus 477 ~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~i 543 (710)
T TIGR03796 477 YVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIPR 543 (710)
T ss_pred eEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEeH
Confidence 5889999987742 124699999999999999999999999999999999998765 589999999886
Q ss_pred cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000517 928 VQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-------IKDSLVGIPG 997 (1449)
Q Consensus 928 ~~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 997 (1449)
.+ ..+++.+|||+|++.++. .|++||+.++ .++.+ ++.++++++..++.+ -.|+.+|..|
T Consensus 544 ~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~-----~~~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 544 EEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLW-----DPTIP----DADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred HHCCHHHHHhheeEEecCChhhh-ccHHHHhhCC-----CCCCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 43 467889999999998875 6999999763 11222 344666777776654 3467787665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
.+||||||||++|||||+++|+||+||||||+||+.++..+++.|++ .++|+|+++|+++ ....+|++++|+ +
T Consensus 614 -~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~-~ 686 (710)
T TIGR03796 614 -ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLE-R 686 (710)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEe-C
Confidence 46999999999999999999999999999999999999999999986 4899999999975 467799999997 5
Q ss_pred cEEEEecCC
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~v~~G~~ 1086 (1449)
|++++.|+.
T Consensus 687 G~i~~~G~~ 695 (710)
T TIGR03796 687 GKVVQRGTH 695 (710)
T ss_pred CEEEEecCH
Confidence 899999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=311.96 Aligned_cols=200 Identities=30% Similarity=0.438 Sum_probs=160.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCCccC--CCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHI--AEMT 261 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lT 261 (1449)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+. ..+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCc
Confidence 35999999999999999999999999999999999999997 9999999987642 245799999987653 3489
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|+||+.++......... . .... .+..++.+++.+||++..++.+++
T Consensus 87 v~e~l~~~~~~~~~~~~--~---~~~~-------------------------~~~~~~~~l~~~~l~~~~~~~~~~---- 132 (213)
T cd03235 87 VRDVVLMGLYGHKGLFR--R---LSKA-------------------------DKAKVDEALERVGLSELADRQIGE---- 132 (213)
T ss_pred HHHHHHhcccccccccc--C---CCHH-------------------------HHHHHHHHHHHcCCHHHHhCCccc----
Confidence 99999875421100000 0 0000 011346688999998777877765
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++. |..+++.+++|++++|++|
T Consensus 133 -LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~s-H~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 133 -LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVT-HDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEe-CCHHHHHHhcCEEEEEcCc-
Confidence 999999999999999999999999999999999999999999999876 466766654 5567888999999999886
Q ss_pred EEEec
Q 000517 422 IVYHG 426 (1449)
Q Consensus 422 iv~~G 426 (1449)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=365.38 Aligned_cols=207 Identities=27% Similarity=0.413 Sum_probs=170.9
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1449)
++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||.++++... ++.++||+|++.+|+ .|
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gT 563 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS-GS 563 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehh-HH
Confidence 5899999999999999999999999999999999999998 9999999999876653 568999999988765 59
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
++|||.++.+ |+.+.++..+++...+.. +.++ .++...||.+|+. ..
T Consensus 564 I~eNi~l~~~------------------------~~~~~~~i~~a~~~a~l~------~~i~--~lp~gldt~i~e~-G~ 610 (708)
T TIGR01193 564 ILENLLLGAK------------------------ENVSQDEIWAACEIAEIK------DDIE--NMPLGYQTELSEE-GS 610 (708)
T ss_pred HHHHHhccCC------------------------CCCCHHHHHHHHHHhCCH------HHHH--hcccccCcEecCC-CC
Confidence 9999987521 111222333333333322 1222 3778889999874 45
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
.||||||||++||||++.+|++|+||||||+||+.+...+.+.|+++ .++|+|+..|++ ++.+.+|+|++|++|+
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~--~~~~~~D~i~~l~~G~ 685 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL--SVAKQSDKIIVLDHGK 685 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch--HHHHcCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999874 367887776665 4668899999999999
Q ss_pred EEEecChhhHHH
Q 000517 422 IVYHGPQDHVLA 433 (1449)
Q Consensus 422 iv~~G~~~~~~~ 433 (1449)
++..|+++++++
T Consensus 686 i~~~G~~~~L~~ 697 (708)
T TIGR01193 686 IIEQGSHDELLD 697 (708)
T ss_pred EEEECCHHHHHh
Confidence 999999999864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=315.19 Aligned_cols=206 Identities=25% Similarity=0.316 Sum_probs=166.1
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCC--CC-eeEEEEEEcCccCcc-----ccccceEEEEccCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT--SG-YVEGEIKISGYPKVQ-----ETFARVSGYCEQTDIH 945 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~--~~-~~~G~I~i~G~~~~~-----~~~~~~~gyv~Q~d~~ 945 (1449)
+.+|+|+|++|++||+++|+||||||||||+++|+|... +. +.+|+|.+||.++.. ...++.++|++|++.+
T Consensus 16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14266 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP 95 (250)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCcc
Confidence 469999999999999999999999999999999999643 11 258999999987532 2346679999999888
Q ss_pred CCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000517 946 SPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1025 (1449)
Q Consensus 946 ~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLD 1025 (1449)
++. |+.||+.+...... ....+...+.+.++++.++|.+........ ....||||||||++|||+|+.+|++|+||
T Consensus 96 ~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~~LS~Gq~qrv~laral~~~p~llllD 171 (250)
T PRK14266 96 FPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDK-SALGLSGGQQQRLCIARTIAVSPEVILMD 171 (250)
T ss_pred Ccc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhC-CcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 874 99999987643221 112233456788899999885422111111 23479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1026 EPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1026 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|||+|||+.+...+.+.|+++++ ++|||+++|++. ++...+|++++|. +|++++.|+.
T Consensus 172 EP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~-~G~i~~~g~~ 229 (250)
T PRK14266 172 EPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFL-NGEIIESGLT 229 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEE-CCeEEEeCCH
Confidence 99999999999999999999864 899999999986 5778889999997 5899999875
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=321.06 Aligned_cols=210 Identities=19% Similarity=0.304 Sum_probs=171.2
Q ss_pred EEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~ 928 (1449)
+.++|+++.++. +...+|+|+|++|++||+++|+|+||||||||+++|+|... .+|+|.++|.++.
T Consensus 3 i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~ 68 (275)
T cd03289 3 MTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWN 68 (275)
T ss_pred EEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhh
Confidence 567777776531 12358999999999999999999999999999999999764 3799999998753
Q ss_pred c---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccC------CCCC
Q 000517 929 Q---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI------PGVN 999 (1449)
Q Consensus 929 ~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~------~~~~ 999 (1449)
. ..+++.++|++|++.+++ .|++||+.... ... ++.+++.++.+||.+..+...+. ++..
T Consensus 69 ~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~ 137 (275)
T cd03289 69 SVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGC 137 (275)
T ss_pred hCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCC
Confidence 2 345678999999999887 59999995321 111 24567888899998765554331 1234
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcE
Q 000517 1000 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079 (1449)
Q Consensus 1000 ~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~ 1079 (1449)
.||||||||++|||||+.+|+||+|||||+|||+.+...+++.|+++. .++|||+++|+++ .+ ..+|++++|. +|+
T Consensus 138 ~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~-~G~ 213 (275)
T cd03289 138 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIE-ENK 213 (275)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEec-CCe
Confidence 699999999999999999999999999999999999999999999874 4899999999975 34 4699999997 589
Q ss_pred EEEecCCC
Q 000517 1080 IIYCGPLG 1087 (1449)
Q Consensus 1080 ~v~~G~~~ 1087 (1449)
+++.|++.
T Consensus 214 i~~~g~~~ 221 (275)
T cd03289 214 VRQYDSIQ 221 (275)
T ss_pred EeecCCHH
Confidence 99999874
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=363.56 Aligned_cols=206 Identities=25% Similarity=0.409 Sum_probs=166.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1449)
+++|+|+|++++|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+|. .
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-G 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-c
Confidence 46899999999999999999999999999999999999998 9999999999877653 568999999887665 7
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
|+||||.++.. +.+.++..+++...+.. +.++ .+++..||.+|+. .
T Consensus 570 TIreNI~~g~~-------------------------~~~~e~i~~al~~a~l~------~~i~--~lp~GldT~ige~-G 615 (711)
T TIGR00958 570 SVRENIAYGLT-------------------------DTPDEEIMAAAKAANAH------DFIM--EFPNGYDTEVGEK-G 615 (711)
T ss_pred CHHHHHhcCCC-------------------------CCCHHHHHHHHHHcCCH------HHHH--hCCCccCCcccCC-C
Confidence 99999987521 11112223333332221 2222 2677889999974 4
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
..||||||||++||||++++|+|++||||||+||+.+...|.+ .. ...++|+|+..|++ ++.+.+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~---~~~~~TvIiItHrl--~~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR---SRASRTVLLIAHRL--STVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh---ccCCCeEEEEeccH--HHHHhCCEEEEEECC
Confidence 5699999999999999999999999999999999999999888 22 22467888776665 466789999999999
Q ss_pred eEEEecChhhHHH
Q 000517 421 KIVYHGPQDHVLA 433 (1449)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1449)
+|+.+|+++++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999999875
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=308.09 Aligned_cols=199 Identities=21% Similarity=0.337 Sum_probs=165.5
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC-CCceEEEEcCCCccCCCCCHHH
Q 000517 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV-PPKTSAYISQNDLHIAEMTVRE 264 (1449)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 264 (1449)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999999997 999999999875432 2467999999999999999999
Q ss_pred HHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCC
Q 000517 265 TVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGIS 344 (1449)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlS 344 (1449)
|+.+...... ... . +.+..++++++.+||++..++.+.+ ||
T Consensus 90 n~~~~~~~~~-~~~--------~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KLN--------A-------------------------EQQEKVVDAAQQVGIADYLDRLPEQ-----LS 130 (213)
T ss_pred HHHhHhhccC-Ccc--------H-------------------------HHHHHHHHHHHHcCcHHHhhCCccc-----CC
Confidence 9987542110 000 0 0011245678999998777877765 99
Q ss_pred hhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCeEEE
Q 000517 345 GGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVY 424 (1449)
Q Consensus 345 GGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~iv~ 424 (1449)
||||||++||++++.+|++++|||||+|||..++..+.+.|+++.+..+.|+|++. |..+++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vs-h~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVT-HHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHhhcCeEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999998764466666654 55667888999999999999998
Q ss_pred ecC
Q 000517 425 HGP 427 (1449)
Q Consensus 425 ~G~ 427 (1449)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=315.73 Aligned_cols=206 Identities=25% Similarity=0.338 Sum_probs=166.9
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCcc-----CCCCCC-------CceEEEEcC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYK-----LEEFVP-------PKTSAYISQ 252 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~-----~~~~~~-------~~~~~yv~Q 252 (1449)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++|
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q 96 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEee
Confidence 5899999999999999999999999999999999999997 9999999987 544321 346899999
Q ss_pred CC--ccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc-
Q 000517 253 ND--LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV- 329 (1449)
Q Consensus 253 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~- 329 (1449)
++ .+.+.+|++||+.+.....+... . .+ ....++++++.+|+..
T Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-~--------~~------------------------~~~~~~~~l~~~~l~~~ 143 (258)
T PRK11701 97 HPRDGLRMQVSAGGNIGERLMAVGARH-Y--------GD------------------------IRATAGDWLERVEIDAA 143 (258)
T ss_pred CcccccCccccHHHHHHHHHHHhccCc-H--------HH------------------------HHHHHHHHHHHcCCChh
Confidence 86 36778899999976432111000 0 00 0112456788999974
Q ss_pred cccccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHh
Q 000517 330 CADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFD 409 (1449)
Q Consensus 330 ~~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~ 409 (1449)
..++.+++ |||||||||+|||||+.+|++|+|||||+|||+.+...+.+.|+++.+..+.|+|++ +|...++.+
T Consensus 144 ~~~~~~~~-----LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~i-sH~~~~~~~ 217 (258)
T PRK11701 144 RIDDLPTT-----FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIV-THDLAVARL 217 (258)
T ss_pred HHhCCCcc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE-eCCHHHHHH
Confidence 56666655 999999999999999999999999999999999999999999999876446666655 556678888
Q ss_pred hcCeEEEEeCCeEEEecChhhHH
Q 000517 410 LFDDIILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 410 ~fD~v~lL~~G~iv~~G~~~~~~ 432 (1449)
.+|+|++|++|++++.|+++++.
T Consensus 218 ~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 218 LAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred hcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999988764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=317.22 Aligned_cols=207 Identities=23% Similarity=0.341 Sum_probs=164.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCeeeEEEECCccCCCC-----CCCceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS--LKVTGEVSYNGYKLEEF-----VPPKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1449)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++|. ...+|+|+++|+++... ..++.++|++|++.++
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 112 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPF 112 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCC
Confidence 4899999999999999999999999999999999998741 01289999999887531 1245789999998877
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc----cccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV----CADT 333 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~dt 333 (1449)
+. ||+||+.++....+.... +.+ ....++.+++.+||.+ ..++
T Consensus 113 ~~-tv~enl~~~~~~~~~~~~--------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 159 (267)
T PRK14235 113 PK-SIYENVAYGPRIHGLARS--------KAE------------------------LDEIVETSLRKAGLWEEVKDRLHE 159 (267)
T ss_pred CC-cHHHHHHHHHHhcccccc--------hHH------------------------HHHHHHHHHHHcCCchhhhHHhhC
Confidence 74 999999987543221100 000 0112456788888854 2344
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++. |..+++.+++|+
T Consensus 160 ~~~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivt-H~~~~~~~~~d~ 231 (267)
T PRK14235 160 PGT-----GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVT-HSMQQAARVSQR 231 (267)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEE-cCHHHHHhhCCE
Confidence 444 4999999999999999999999999999999999999999999999854 46666654 556788899999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000517 414 IILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~ 432 (1449)
+++|++|+++.+|+.+++.
T Consensus 232 v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 232 TAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999987763
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=356.38 Aligned_cols=211 Identities=24% Similarity=0.447 Sum_probs=178.4
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++++|++|+++. +++.+|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 338 ~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~i 404 (574)
T PRK11160 338 SLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQPI 404 (574)
T ss_pred eEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEh
Confidence 5889999987642 123589999999999999999999999999999999998765 589999999875
Q ss_pred cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccc------ccccccCCCC
Q 000517 928 VQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI------KDSLVGIPGV 998 (1449)
Q Consensus 928 ~~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~------~~~~vg~~~~ 998 (1449)
.+ ..+++.++||+|++.+++ .|++||+.++. ++ ..++.++++++..++.+. .|+.+|..+
T Consensus 405 ~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~----~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g- 473 (574)
T PRK11160 405 ADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA-----PN----ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGG- 473 (574)
T ss_pred hhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC-----Cc----cCHHHHHHHHHHcCCHHHHcCccccCchhcCCC-
Confidence 43 457788999999998875 59999997742 11 123557888888888754 467777654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCc
Q 000517 999 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGG 1078 (1449)
Q Consensus 999 ~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG 1078 (1449)
..||||||||++|||+|+++|++|+||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|++++|+ +|
T Consensus 474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~-~G 549 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMD-NG 549 (574)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEe-CC
Confidence 4699999999999999999999999999999999999999999999985 5899999999986 356799999998 58
Q ss_pred EEEEecCC
Q 000517 1079 RIIYCGPL 1086 (1449)
Q Consensus 1079 ~~v~~G~~ 1086 (1449)
++++.|+.
T Consensus 550 ~i~~~g~~ 557 (574)
T PRK11160 550 QIIEQGTH 557 (574)
T ss_pred eEEEeCCH
Confidence 99999975
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=308.30 Aligned_cols=215 Identities=27% Similarity=0.368 Sum_probs=174.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-C-CCCeeeEEEECCccCCCCCC-------CceEEEEcCC
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD-P-SLKVTGEVSYNGYKLEEFVP-------PKTSAYISQN 253 (1449)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~-~-~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 253 (1449)
..++++||||.+++||+++|+|.|||||||+.++|.|+++ + ....+|+|.++|.++-.+.. .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 3569999999999999999999999999999999999998 4 33468999999997654432 3579999999
Q ss_pred C--ccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccc
Q 000517 254 D--LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCA 331 (1449)
Q Consensus 254 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~ 331 (1449)
+ .+-|.+||.+.+.-..+...... .++| ....+.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------~~~e------------------------a~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------SKKE------------------------AKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------hhHH------------------------HHHHHHHHHHHcCCCCHH
Confidence 5 58899999998876655322110 0000 112345689999998642
Q ss_pred cccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhc
Q 000517 332 DTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLF 411 (1449)
Q Consensus 332 dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~f 411 (1449)
. +-+.+...|||||||||.||.||+.+|++|+.|||||+||...+.+|++.|+++.++. ++.++.++|+..-+.++|
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~-~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREK-GTALILITHDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhc
Confidence 1 1123344599999999999999999999999999999999999999999999998854 566666789999999999
Q ss_pred CeEEEEeCCeEEEecChhhHH
Q 000517 412 DDIILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 412 D~v~lL~~G~iv~~G~~~~~~ 432 (1449)
|||+||..|+||+.|+.+++.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999874
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=307.24 Aligned_cols=184 Identities=23% Similarity=0.315 Sum_probs=155.0
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc--ccccceEEEEccCCCCCCCCC
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ--ETFARVSGYCEQTDIHSPNIT 950 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~~lT 950 (1449)
++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 35699999999999999999999999999999999997654 58999999986432 234567899999988888899
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000517 951 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1030 (1449)
Q Consensus 951 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsg 1030 (1449)
+.||+.+....+. .+ ++.++++++.++|.+..++.++ .||||||||++||++++.+|++++|||||+|
T Consensus 90 v~~~l~~~~~~~~-----~~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 90 ALENLHFWAAIHG-----GA--QRTIEDALAAVGLTGFEDLPAA-----QLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred HHHHHHHHHHHcC-----Cc--HHHHHHHHHHcCCHHHhcCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999987643321 11 2457889999999887777654 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEE
Q 000517 1031 LDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELIL 1073 (1449)
Q Consensus 1031 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~ 1073 (1449)
||+.+...+++.|++++++|.|||+++|++.. + .+++++.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~--~~~~~~~ 197 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDLG-L--VEARELR 197 (198)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEccccc-c--cceEEee
Confidence 99999999999999987789999999999752 2 3455543
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=315.79 Aligned_cols=206 Identities=25% Similarity=0.372 Sum_probs=163.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCeeeEEEECCccCCCC-----CCCceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD--PSLKVTGEVSYNGYKLEEF-----VPPKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1449)
++|+|+|++|++||+++|+|||||||||||++|+|.++ |+...+|+|+++|+++... ..++.++|++|++.++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 58999999999999999999999999999999999987 3212389999999987431 1245799999998888
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc----cccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV----CADT 333 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~dt 333 (1449)
+. ||+||+.|.....+.... .+ ....++.+++.+|+.+ ..++
T Consensus 106 ~~-tv~enl~~~~~~~~~~~~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~l~~ 151 (259)
T PRK14274 106 PQ-SIFDNVAYGPRIHGTKNK---------KK------------------------LQEIVEKSLKDVALWDEVKDRLHT 151 (259)
T ss_pred cc-CHHHHHHhHHHhcCCCCH---------HH------------------------HHHHHHHHHHHcCCchhhhhhhhC
Confidence 75 999999886543221000 00 0012345677777753 2344
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. ++|+|++.| ..+++.+++|+
T Consensus 152 ~~~-----~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH-~~~~~~~~~d~ 223 (259)
T PRK14274 152 QAL-----SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTH-NMQQAARVSDQ 223 (259)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEc-CHHHHHHhCCE
Confidence 444 4999999999999999999999999999999999999999999999853 567666654 55688899999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000517 414 IILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~ 432 (1449)
+++|++|+++.+|+++++.
T Consensus 224 i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 224 TAFFYMGELVECNDTNKMF 242 (259)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999988874
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=324.10 Aligned_cols=221 Identities=23% Similarity=0.336 Sum_probs=172.6
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCC---CeeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTS---GYVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~---~~~~G~I~i~G 924 (1449)
.+.++|+++.+. .+.+|+++|++|++||+++|+|+|||||||||++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 466777776542 24599999999999999999999999999999999997542 13589999999
Q ss_pred ccCcc-----ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCC---------CCC-hHHHHHHHHHHHHHcCCcccc
Q 000517 925 YPKVQ-----ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAP---------EIN-SKTKAEFVNEVLETIELDAIK 989 (1449)
Q Consensus 925 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~---------~~~-~~~~~~~v~~~l~~l~L~~~~ 989 (1449)
.++.. ...++.++|++|++.+++ .||+||+.+....+... ... ....++.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87532 234567999999988777 59999999864322100 011 122346688899999885322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcC
Q 000517 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFD 1069 (1449)
Q Consensus 990 ~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d 1069 (1449)
...... .+..||||||||++||++|+.+|+||||||||+|||+.++..+++.|+++++ +.|||+++|+++ .+.+.+|
T Consensus 191 ~~~~~~-~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLDD-NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhcC-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 122111 1347999999999999999999999999999999999999999999999876 589999999986 4678899
Q ss_pred eEE-EEecCcEEEEecCC
Q 000517 1070 ELI-LLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1070 ~~~-~l~~gG~~v~~G~~ 1086 (1449)
+++ +|. +|++++.|+.
T Consensus 268 ~i~~~l~-~G~i~~~g~~ 284 (305)
T PRK14264 268 QTAVFLT-GGELVEYDDT 284 (305)
T ss_pred EEEEEec-CCEEEEeCCH
Confidence 975 555 6999999986
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=315.61 Aligned_cols=207 Identities=24% Similarity=0.327 Sum_probs=162.7
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---cc-ccceEEEEccCCCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ET-FARVSGYCEQTDIHSPNI 949 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~-~~~~~gyv~Q~d~~~~~l 949 (1449)
+.+|+|+|++|++||+++|+|+||||||||+++|+|.....+.+|+|.++|.+... .. .++.++|++|++.+++.+
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV 93 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence 45999999999999999999999999999999999974211358999999987532 11 235699999999888888
Q ss_pred CHHHHHHHHHH-hccC-C--CCChHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000517 950 TVEESVIFSAW-LRLA-P--EINSKTKAEFVNEVLETIELD-AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 1024 (1449)
Q Consensus 950 Tv~e~l~f~~~-lr~~-~--~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illL 1024 (1449)
|+.+++.+... ++.. . ........+.+++.++.+++. +..+..+. +.||||||||++|||||+.+|++|+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrv~laral~~~p~illL 169 (248)
T PRK09580 94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCIL 169 (248)
T ss_pred hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 87776643211 1110 0 011122345678899999985 34444431 26999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHh-cCeEEEEecCcEEEEecCC
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEA-FDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~-~d~~~~l~~gG~~v~~G~~ 1086 (1449)
||||+|||+.++..+.+.|+++++.|+|||++||++.. +... +|++++|. +|++++.|+.
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i~~l~-~g~i~~~g~~ 230 (248)
T PRK09580 170 DESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLY-QGRIVKSGDF 230 (248)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEEEEEE-CCeEEEeCCH
Confidence 99999999999999999999998778999999999763 4444 79999997 5899999975
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=300.52 Aligned_cols=158 Identities=30% Similarity=0.489 Sum_probs=142.0
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc--ccccceEEEEccCCCCCCCCCH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ--ETFARVSGYCEQTDIHSPNITV 951 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 951 (1449)
..+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++.+++..|+
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTV 90 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcccchHhhhccEEEEecCCccccCCcH
Confidence 3599999999999999999999999999999999998654 58999999987532 2345679999999988888999
Q ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000517 952 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031 (1449)
Q Consensus 952 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgL 1031 (1449)
.||+. ||||||||++|||+|+.+|++++|||||+||
T Consensus 91 ~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 91 RENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred HHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 99863 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcE
Q 000517 1032 DARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079 (1449)
Q Consensus 1032 D~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~ 1079 (1449)
|+.++..+.+.|++++++|.|+|+++|+++ ++.+.+|++++|++ |+
T Consensus 127 D~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~-g~ 172 (173)
T cd03230 127 DPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNN-GR 172 (173)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeC-CC
Confidence 999999999999999877899999999986 56678999999985 54
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=301.45 Aligned_cols=171 Identities=41% Similarity=0.706 Sum_probs=151.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCCCeeeEEEECCccCCCCCCCceEEEEcCCCccCCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNL--DPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l--~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1449)
.++|+|+|+++++|++++|+||||||||||+++|+|.+ +|. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 45999999999999999999999999999999999999 887 9999999998764334567999999998899999
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
++||+.+..++ .
T Consensus 99 ~~~~i~~~~~~-------------------------------------------------------~------------- 110 (194)
T cd03213 99 VRETLMFAAKL-------------------------------------------------------R------------- 110 (194)
T ss_pred HHHHHHHHHHh-------------------------------------------------------c-------------
Confidence 99999764210 0
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|++.|++..++.+.+|++++|++|+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 2999999999999999999999999999999999999999999999865 478888887776667888999999999999
Q ss_pred EEEec
Q 000517 422 IVYHG 426 (1449)
Q Consensus 422 iv~~G 426 (1449)
+++.|
T Consensus 190 i~~~~ 194 (194)
T cd03213 190 VIYFG 194 (194)
T ss_pred EEecC
Confidence 98765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=353.85 Aligned_cols=206 Identities=28% Similarity=0.493 Sum_probs=168.5
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1449)
++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|++||.++++... ++.++||+|++.+|+ .|
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~t 429 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-AT 429 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-cc
Confidence 5899999999999999999999999999999999999998 9999999999877653 567999999987765 69
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
++||+.++.. +.+.++..+++...+. ++.++ . ++..||.+|+. .+
T Consensus 430 i~~Ni~~~~~-------------------------~~~~~~i~~al~~~~l------~~~i~--~-p~GldT~vge~-g~ 474 (574)
T PRK11160 430 LRDNLLLAAP-------------------------NASDEALIEVLQQVGL------EKLLE--D-DKGLNAWLGEG-GR 474 (574)
T ss_pred HHHHhhcCCC-------------------------ccCHHHHHHHHHHcCC------HHHHc--C-ccccCchhcCC-CC
Confidence 9999987531 1111122222222221 11121 3 67789999975 45
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
.||||||||++|||+++++|++|+|||||++||+.++..|.+.|+++. .++|+|+..|++. ....+|+|++|++|+
T Consensus 475 ~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~--~~~~~d~i~~l~~G~ 550 (574)
T PRK11160 475 QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLT--GLEQFDRICVMDNGQ 550 (574)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChh--HHHhCCEEEEEeCCe
Confidence 599999999999999999999999999999999999999999999875 3688888777763 456799999999999
Q ss_pred EEEecChhhHHH
Q 000517 422 IVYHGPQDHVLA 433 (1449)
Q Consensus 422 iv~~G~~~~~~~ 433 (1449)
++..|+++++++
T Consensus 551 i~~~g~~~~l~~ 562 (574)
T PRK11160 551 IIEQGTHQELLA 562 (574)
T ss_pred EEEeCCHHHHHh
Confidence 999999998864
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=330.61 Aligned_cols=222 Identities=27% Similarity=0.427 Sum_probs=190.5
Q ss_pred ccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc----ccccceEEEEccCC
Q 000517 868 GFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ----ETFARVSGYCEQTD 943 (1449)
Q Consensus 868 ~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~d 943 (1449)
++.++..++|+||||++++||++||+|.||||||||+|+|+|...+ .+|+|.+||.+... +.....++.|.|+.
T Consensus 15 ~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p--~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl 92 (500)
T COG1129 15 SKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP--DSGEILIDGKPVAFSSPRDALAAGIATVHQEL 92 (500)
T ss_pred eEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC--CCceEEECCEEccCCCHHHHHhCCcEEEeech
Confidence 3445667899999999999999999999999999999999997765 58999999987532 33456799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000517 944 IHSPNITVEESVIFSAWLRL-APEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 1022 (1449)
Q Consensus 944 ~~~~~lTv~e~l~f~~~lr~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~il 1022 (1449)
.+.|++||.||+.++...+. ..-++.+...+...++|+.+++....++.++ .||+||||.|.|||||..+++||
T Consensus 93 ~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~LsiaqrQ~VeIArAl~~~arll 167 (500)
T COG1129 93 SLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVL 167 (500)
T ss_pred hccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999987755443 2234566777889999999999644777776 69999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC-CC-ChhHHHHHHh
Q 000517 1023 FMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL-GK-HSSQVIEYFE 1098 (1449)
Q Consensus 1023 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~-~~-~~~~~~~~f~ 1098 (1449)
+||||||.|+......+.+.++++.++|.+||++||..+ ++++.+|++.+|. +|+.+..++. ++ ..+++++..-
T Consensus 168 IlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlR-DG~~v~~~~~~~~~~~~~lv~~Mv 243 (500)
T COG1129 168 ILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLR-DGRVVGTRPTAAETSEDELVRLMV 243 (500)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEe-CCEEeeecccccCCCHHHHHHHhh
Confidence 999999999999999999999999999999999999986 8999999999997 5899999983 54 3445665554
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=313.18 Aligned_cols=206 Identities=24% Similarity=0.365 Sum_probs=164.5
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCeeeEEEECCccCCCCC-----CCceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS--LKVTGEVSYNGYKLEEFV-----PPKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~~ 257 (1449)
.+|+|+|+++++||+++|+|||||||||||++|+|..+|. ...+|+|.++|.++.... .++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14270 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPF 97 (251)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcC
Confidence 5899999999999999999999999999999999998751 113899999999875321 145699999998888
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC----ccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD----VCADT 333 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~dt 333 (1449)
+ +||+||+.|.....+.... .+ ....++.+++.+||. +..++
T Consensus 98 ~-~tv~enl~~~~~~~~~~~~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 143 (251)
T PRK14270 98 P-MSIYDNVAYGPRIHGIKDK---------KE------------------------LDKIVEWALKKAALWDEVKDDLKK 143 (251)
T ss_pred C-CcHHHHHHhHHHhcCCCcH---------HH------------------------HHHHHHHHHHHcCCchhhhhHhhC
Confidence 7 8999999987543221000 00 001234567778774 23444
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.++ .||||||||++||++++.+|++++|||||+|||+.++.++.+.|+++.+ ++|+|++. |...++.+++|+
T Consensus 144 ~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivs-H~~~~~~~~~d~ 215 (251)
T PRK14270 144 SAL-----KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVT-HNMQQASRVSDY 215 (251)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEE-cCHHHHHHhcCE
Confidence 444 4999999999999999999999999999999999999999999999864 46666655 456688899999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000517 414 IILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~ 432 (1449)
+++|++|++++.|+.+++.
T Consensus 216 v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 216 TAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEEECCeEEEeCCHHHHh
Confidence 9999999999999988874
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=304.61 Aligned_cols=196 Identities=24% Similarity=0.439 Sum_probs=170.9
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC-------CCceEEEEcCCCccCCCCC
Q 000517 189 HVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV-------PPKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 261 (1449)
++++..+.--+|||-|+||||||||+|+|+|+.+|+ +|+|.+||..+.+.. .+|.+|||+||..+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 567777765799999999999999999999999998 999999998764321 2578999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|+-||.|+.... .....|++.+.||++|..+.+...
T Consensus 93 VrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~R~P~~---- 128 (352)
T COG4148 93 VRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLDRYPGT---- 128 (352)
T ss_pred Eecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHhhCCCc----
Confidence 999999975321 001246788999999999998876
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
|||||||||+|||||++.|++|+||||.+.||-....+|+-.|+++.++.+.- |+.++|-..|+.+++|+|++|++|+
T Consensus 129 -LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IP-IlYVSHS~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 129 -LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIP-ILYVSHSLDEVLRLADRVVVLENGK 206 (352)
T ss_pred -cCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCC-EEEEecCHHHHHhhhheEEEecCCe
Confidence 99999999999999999999999999999999999999999999998865544 4556677899999999999999999
Q ss_pred EEEecChhhHHH
Q 000517 422 IVYHGPQDHVLA 433 (1449)
Q Consensus 422 iv~~G~~~~~~~ 433 (1449)
+...|+.+++.+
T Consensus 207 V~A~g~~e~v~~ 218 (352)
T COG4148 207 VKASGPLEEVWG 218 (352)
T ss_pred EEecCcHHHHhc
Confidence 999999998853
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=316.76 Aligned_cols=207 Identities=28% Similarity=0.430 Sum_probs=169.5
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1449)
.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+|
T Consensus 15 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (256)
T TIGR03873 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91 (256)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCCC
Confidence 5899999999999999999999999999999999999987 9999999988765322 346899999987788899
Q ss_pred HHHHHHHHHH-ccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 262 VRETVDFSAR-CQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 262 V~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
|+||+.++.. ..... . .+. + +....++.+++.+||.+..++.+++
T Consensus 92 v~e~l~~~~~~~~~~~----------------~-~~~-~-------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 137 (256)
T TIGR03873 92 VRDVVALGRIPHRSLW----------------A-GDS-P-------------HDAAVVDRALARTELSHLADRDMST--- 137 (256)
T ss_pred HHHHHHhcchhhhhhc----------------c-CCC-H-------------HHHHHHHHHHHHcCcHhhhcCCccc---
Confidence 9999987531 00000 0 000 0 0011346678899998777887765
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
||||||||++||+|++.+|++++|||||+|||+.+...+.+.|+++.+ .+.|+|++. |..+++.+++|+|++|++|
T Consensus 138 --LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~s-H~~~~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 138 --LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAAL-HDLNLAASYCDHVVVLDGG 213 (256)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEe-CCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999864 466766655 5566888999999999999
Q ss_pred eEEEecChhhHH
Q 000517 421 KIVYHGPQDHVL 432 (1449)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1449)
+++..|+.+++.
T Consensus 214 ~i~~~g~~~~~~ 225 (256)
T TIGR03873 214 RVVAAGPPREVL 225 (256)
T ss_pred CEEEecCHHHhh
Confidence 999999987753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=323.35 Aligned_cols=210 Identities=24% Similarity=0.338 Sum_probs=164.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCeeeEEEECCccCCCC-----CCCceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS--LKVTGEVSYNGYKLEEF-----VPPKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1449)
++|+|+|+.|++|++++|+|||||||||||++|+|..++. ...+|+|.++|+++... ..++.++||+|++.++
T Consensus 96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~ 175 (329)
T PRK14257 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPF 175 (329)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 5899999999999999999999999999999999998631 01389999999988532 2356799999998877
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGN 337 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 337 (1449)
+.||+||+.|+....+... ++. .+...+.+++.++|.+..++.++.
T Consensus 176 -~~ti~eNi~~~~~~~~~~~----------~~~-----------------------~~~~~~~~l~~~~L~~~l~~~~~~ 221 (329)
T PRK14257 176 -EMSIFDNVAYGPRNNGIND----------RKI-----------------------LEKIVEKSLKSAALWDEVKDDLDK 221 (329)
T ss_pred -CCcHHHHHHhHHHhcCCCh----------HHH-----------------------HHHHHHHHHHHcCCcchhhhhhhC
Confidence 4899999998653321100 000 001124456666665433344443
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL 417 (1449)
....|||||||||+||||++.+|+||+|||||+|||+.+...+.++|+++.+ ++|+|++. |....+.+.+|+|++|
T Consensus 222 -~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iT-H~l~~i~~~~Driivl 297 (329)
T PRK14257 222 -AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVT-HSMAQAQRISDETVFF 297 (329)
T ss_pred -CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEe-CCHHHHHHhCCEEEEE
Confidence 2345999999999999999999999999999999999999999999999864 46766654 5567788889999999
Q ss_pred eCCeEEEecChhhHH
Q 000517 418 AEGKIVYHGPQDHVL 432 (1449)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1449)
++|+++..|+++++.
T Consensus 298 ~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 298 YQGWIEEAGETKTIF 312 (329)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999999884
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=345.39 Aligned_cols=211 Identities=27% Similarity=0.448 Sum_probs=175.6
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++++|++|+++. +++.+|+|+|++|+|||.+||+|+||||||||+++|+|...+ .+|+|.+||.+.
T Consensus 455 ~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~~i 521 (694)
T TIGR01846 455 AITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGVDL 521 (694)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEeh
Confidence 5889999987642 224589999999999999999999999999999999998765 489999999886
Q ss_pred cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000517 928 VQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-------IKDSLVGIPG 997 (1449)
Q Consensus 928 ~~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 997 (1449)
.+ ..+++.++||+|++.+++ .|++||+.++. ++.+ ++.+.++++..++.+ -.|+.+|..+
T Consensus 522 ~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g 591 (694)
T TIGR01846 522 AIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEKG 591 (694)
T ss_pred hhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCCC
Confidence 43 467788999999988775 69999997631 1222 234556666666543 3577777655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. .++|+|++||+++ ....+|++++|+ +
T Consensus 592 -~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~-~ 666 (694)
T TIGR01846 592 -ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLE-K 666 (694)
T ss_pred -CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEe-C
Confidence 4799999999999999999999999999999999999999999999984 5899999999985 456799999998 5
Q ss_pred cEEEEecCC
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~v~~G~~ 1086 (1449)
|++++.|+.
T Consensus 667 G~i~~~g~~ 675 (694)
T TIGR01846 667 GQIAESGRH 675 (694)
T ss_pred CEEEEeCCH
Confidence 899999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=331.29 Aligned_cols=192 Identities=19% Similarity=0.306 Sum_probs=162.2
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCCCCCCHHH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEE 953 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~e 953 (1449)
+.+|+|+||+|++|+++||+|||||||||||++|+|...+ .+|+|.++|.+. ++.+...+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P--~sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP--NKGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 4699999999999999999999999999999999998665 589999999641 1222334567789999
Q ss_pred HHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000517 954 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 1033 (1449)
Q Consensus 954 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~ 1033 (1449)
++.+..... ....+...+.++++++.++|.+..+..++ .||||||||++|||||+.+|++|+|||||+|||+
T Consensus 105 nL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~-----~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVK-----TYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 998754332 12234445667889999999887777654 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1034 RAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1034 ~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
.++..+++.|+++++.|+|||+++|+++ .+...+|++++|. +|++++.|+..
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~-~GkIv~~G~~~ 228 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLH-YGQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 9999999999998877999999999986 5778899999997 58999999864
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=315.14 Aligned_cols=206 Identities=23% Similarity=0.324 Sum_probs=163.1
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCeeeEEEECCccCCCC-----CCCceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD--PSLKVTGEVSYNGYKLEEF-----VPPKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1449)
++|+|+|++|++|++++|+||||||||||+++|+|.++ |....+|+|.++|.++... ..++.++|++|++.++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 48999999999999999999999999999999999986 2111389999999887421 1245799999998777
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC----ccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD----VCADT 333 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~dt 333 (1449)
+ .||+||+.+......... ..+ .+..++++++.+||. +..++
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~---------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 152 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLS---------RAE------------------------MDERVEWALTKAALWNEVKDKLHQ 152 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCC---------HHH------------------------HHHHHHHHHHHcCCChhhHHHHhc
Confidence 7 899999988654221000 000 011245678888874 23445
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++. |...++.+++|+
T Consensus 153 ~~~-----~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~s-H~~~~~~~~~d~ 224 (260)
T PRK10744 153 SGY-----SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--DYTVVIVT-HNMQQAARCSDY 224 (260)
T ss_pred CCC-----CCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEe-CCHHHHHHhCCE
Confidence 444 4999999999999999999999999999999999999999999999852 56666654 556678889999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000517 414 IILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~ 432 (1449)
+++|++|+++..|+.+++.
T Consensus 225 i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 225 TAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=296.19 Aligned_cols=209 Identities=22% Similarity=0.370 Sum_probs=185.9
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCCCceEEEEcCCCccCCCCC
Q 000517 182 AKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1449)
.++++++|+|+.++||+|++++|||||||||.+++|.|.+.|+ +|+|+++|.+++... +.++||.|.+--+++.+|
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMT 88 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhccCccCc
Confidence 3467999999999999999999999999999999999999998 999999999886543 457999999999999999
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
|.|.|.|-++++|....+ .....+++|+.+++......+|-+
T Consensus 89 v~dql~yla~LkGm~~~e----------------------------------~~~~~~~wLer~~i~~~~~~kIk~---- 130 (300)
T COG4152 89 VEDQLKYLAELKGMPKAE----------------------------------IQKKLQAWLERLEIVGKKTKKIKE---- 130 (300)
T ss_pred HHHHHHHHHHhcCCcHHH----------------------------------HHHHHHHHHHhccccccccchHHH----
Confidence 999999999998864321 112357789999999888888765
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
||-|.+|++-+-.+++++|++++||||+|||||.++..+-+.+.++.. .|.|+|.+. |..+.+.++||++++|++|+
T Consensus 131 -LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifSs-H~Me~vEeLCD~llmL~kG~ 207 (300)
T COG4152 131 -LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFSS-HRMEHVEELCDRLLMLKKGQ 207 (300)
T ss_pred -hhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEec-chHHHHHHHhhhhheecCCc
Confidence 999999999999999999999999999999999999999999999875 578888775 56889999999999999999
Q ss_pred EEEecChhhHHHHH
Q 000517 422 IVYHGPQDHVLAFF 435 (1449)
Q Consensus 422 iv~~G~~~~~~~~F 435 (1449)
.|.+|+.++++.-|
T Consensus 208 ~V~~G~v~~ir~~~ 221 (300)
T COG4152 208 TVLYGTVEDIRRSF 221 (300)
T ss_pred eEEeccHHHHHHhc
Confidence 99999999998744
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=364.21 Aligned_cols=210 Identities=27% Similarity=0.433 Sum_probs=174.1
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++|+|++|+++.. .++.+|+|+|++|+|||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 478 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i 545 (711)
T TIGR00958 478 LIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVPL 545 (711)
T ss_pred eEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEH
Confidence 58899999987521 124699999999999999999999999999999999998765 589999999886
Q ss_pred cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000517 928 VQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI-------KDSLVGIPG 997 (1449)
Q Consensus 928 ~~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~~ 997 (1449)
.+ ..+++.++||+|++.++. .|++|||.++. ++.+ ++.++++++..++.+. .|+.+|..|
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~-----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 615 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL-----TDTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615 (711)
T ss_pred HhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC-----CCCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence 43 457788999999998875 69999998741 1222 3456777777776543 577787655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
..||||||||++|||||+++|+||+||||||+||+.+...+++ .. ..+++|+|+++|+++ ..+.+|++++|+ +
T Consensus 616 -~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~-~ 688 (711)
T TIGR00958 616 -SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLK-K 688 (711)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEE-C
Confidence 4699999999999999999999999999999999999999998 22 235899999999975 567899999997 5
Q ss_pred cEEEEecCC
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~v~~G~~ 1086 (1449)
|++++.|+.
T Consensus 689 G~ive~Gt~ 697 (711)
T TIGR00958 689 GSVVEMGTH 697 (711)
T ss_pred CEEEEeeCH
Confidence 899999985
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=314.98 Aligned_cols=207 Identities=25% Similarity=0.352 Sum_probs=165.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC--CeeeEEEECCccCCCC-----CCCceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL--KVTGEVSYNGYKLEEF-----VPPKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1449)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|.- ..+|+|.++|+++... ..++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 58999999999999999999999999999999999987410 1389999999876421 1245799999999899
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC----ccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD----VCADT 333 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~dt 333 (1449)
+.+||+||+.++....+.... ++ .+..++.+++.+||. +..++
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 144 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRNK---------KD------------------------LDELVEKSLRGANLWNEVKDRLDK 144 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCCH---------HH------------------------HHHHHHHHHHHcCCchhhhhHhhC
Confidence 999999999887543211000 00 011245677888874 33455
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++ +|...++.+++|+
T Consensus 145 ~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviiv-sH~~~~~~~~~d~ 216 (258)
T PRK14241 145 PGGG-----LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIV-THNMQQAARVSDQ 216 (258)
T ss_pred Cccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEE-ecCHHHHHHhCCE
Confidence 5544 999999999999999999999999999999999999999999999853 4666665 4556788899999
Q ss_pred EEEEe------CCeEEEecChhhHH
Q 000517 414 IILMA------EGKIVYHGPQDHVL 432 (1449)
Q Consensus 414 v~lL~------~G~iv~~G~~~~~~ 432 (1449)
|++|+ +|++++.|+++++.
T Consensus 217 i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 217 TAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEecccCCCCceEEecCCHHHHH
Confidence 99997 79999999988764
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=312.62 Aligned_cols=195 Identities=25% Similarity=0.414 Sum_probs=159.8
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---ccccceEEEEccCCCCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNIT 950 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lT 950 (1449)
+.+|+|+|+++++|++++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++ .|
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 93 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GT 93 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-ch
Confidence 4599999999999999999999999999999999998654 48999999986532 234567999999988776 69
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccccccccc------CCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000517 951 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVG------IPGVNGLSTEQRKRLTIAVELVANPSIIFM 1024 (1449)
Q Consensus 951 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg------~~~~~~LSgGqrqRl~Ia~aL~~~p~illL 1024 (1449)
+.||+.+... . .. .+.+.++++.+++.+..+.... ......||||||||++||++|+.+|++|+|
T Consensus 94 v~e~l~~~~~-----~-~~---~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llll 164 (220)
T cd03245 94 LRDNITLGAP-----L-AD---DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLL 164 (220)
T ss_pred HHHHhhcCCC-----C-CC---HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999876311 1 11 2345678888898876665431 012347999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEec
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G 1084 (1449)
||||+|||+.++..+++.|+++++ ++|||++||++.. .+.+|++++|. +|++++.|
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~--~~~~d~v~~l~-~g~i~~~~ 220 (220)
T cd03245 165 DEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSL--LDLVDRIIVMD-SGRIVADG 220 (220)
T ss_pred eCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH--HHhCCEEEEEe-CCeEeecC
Confidence 999999999999999999999875 4899999999863 47899999997 58887754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=363.59 Aligned_cols=211 Identities=27% Similarity=0.459 Sum_probs=177.6
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~ 927 (1449)
.++++|++|+++. .++.+|+|+|++|+|||.+||+|+||||||||+++|+|...+ .+|+|.+||.+.
T Consensus 463 ~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~l 529 (694)
T TIGR03375 463 EIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVDI 529 (694)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEh
Confidence 5889999988742 124599999999999999999999999999999999998765 589999999886
Q ss_pred cc---ccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000517 928 VQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-------IKDSLVGIPG 997 (1449)
Q Consensus 928 ~~---~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 997 (1449)
.+ ..+|+.++||+|++.++. .|++|||.++. ++.+ ++.++++++..++.+ -.|+.+|..|
T Consensus 530 ~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G 599 (694)
T TIGR03375 530 RQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGERG 599 (694)
T ss_pred hhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCCC----HHHHHHHHHHcChHHHHHhCcccccceecCCC
Confidence 43 467889999999998876 59999997631 1222 344566677666543 3577888765
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecC
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~g 1077 (1449)
. .||||||||++|||||+++|+||+||||||+||+.+...+++.|+++. +++|+|+++|+++ ..+.+|++++|+ +
T Consensus 600 ~-~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~-~ 674 (694)
T TIGR03375 600 R-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMD-N 674 (694)
T ss_pred C-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEe-C
Confidence 4 699999999999999999999999999999999999999999999975 4899999999985 468899999997 5
Q ss_pred cEEEEecCC
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~v~~G~~ 1086 (1449)
|++++.|+.
T Consensus 675 G~i~e~G~~ 683 (694)
T TIGR03375 675 GRIVADGPK 683 (694)
T ss_pred CEEEeeCCH
Confidence 899999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=313.99 Aligned_cols=206 Identities=22% Similarity=0.305 Sum_probs=163.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--CCeeeEEEECCccCCCCC-----CCceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS--LKVTGEVSYNGYKLEEFV-----PPKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~~ 257 (1449)
++|+|+|+++++||+++|+|||||||||||++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.++
T Consensus 34 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 113 (267)
T PRK14237 34 EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPF 113 (267)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccc
Confidence 5899999999999999999999999999999999998641 123899999999875321 245799999998877
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc----cccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV----CADT 333 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~dt 333 (1449)
+ .||+||+.++....+.... .+ .+..++.+++.+||.+ ..+.
T Consensus 114 ~-~tv~eni~~~~~~~~~~~~---------~~------------------------~~~~~~~~l~~~~l~~~i~~~~~~ 159 (267)
T PRK14237 114 A-KSIYENITFALERAGVKDK---------KV------------------------LDEIVETSLKQAALWDQVKDDLHK 159 (267)
T ss_pred c-ccHHHHHHhHHHhcCCCCH---------HH------------------------HHHHHHHHHHHcCCCchhhhhhcC
Confidence 7 6999999886543211000 00 0112455678888853 2344
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++. |..+++.++||+
T Consensus 160 ~~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~t-H~~~~~~~~~d~ 231 (267)
T PRK14237 160 SA-----LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--NYTIIIVT-HNMQQAARASDY 231 (267)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEe-cCHHHHHHhcCE
Confidence 43 44999999999999999999999999999999999999999999999843 56666655 555678899999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000517 414 IILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~ 432 (1449)
+++|++|++++.|+.+++.
T Consensus 232 i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 232 TAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988874
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=318.64 Aligned_cols=195 Identities=27% Similarity=0.387 Sum_probs=156.6
Q ss_pred eeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---ccccceEEEEccCCCCCCCCCH
Q 000517 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNITV 951 (1449)
Q Consensus 875 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTv 951 (1449)
.+|+|+||++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++ .||
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 589999999999999999999999999999999998664 58999999976432 234567999999988776 699
Q ss_pred HHHHHHHHHhccCCCCChHHHH-----HHHHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000517 952 EESVIFSAWLRLAPEINSKTKA-----EFVNEVLETI--ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFM 1024 (1449)
Q Consensus 952 ~e~l~f~~~lr~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illL 1024 (1449)
+||+.+... ........ ..+++.++.+ ++.+..+.. +..||||||||++||++|+.+|++++|
T Consensus 93 ~enl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 93 AENIAYGRP-----GATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred HHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999976421 11111111 1234445554 454444443 347999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
||||+|||+.+...+.+.|+++. +|+|||++||++. ++ ..+|++++|. +|++++.|+.
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~-~G~i~~~~~~ 220 (234)
T cd03251 163 DEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLE-DGKIVERGTH 220 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEec-CCeEeeeCCH
Confidence 99999999999999999999986 4899999999986 35 4599999997 5899988875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=347.88 Aligned_cols=209 Identities=26% Similarity=0.428 Sum_probs=168.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1449)
.++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++.
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~- 406 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG- 406 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCcccccc-
Confidence 35899999999999999999999999999999999999998 9999999998876543 5689999999887764
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
|++||+.+... +.+.++..+++...+ .++.++. |++..||.+|+. .
T Consensus 407 ti~~Ni~~~~~-------------------------~~~~~~~~~~~~~~~------~~~~i~~--l~~gl~t~~~~~-g 452 (544)
T TIGR01842 407 TVAENIARFGE-------------------------NADPEKIIEAAKLAG------VHELILR--LPDGYDTVIGPG-G 452 (544)
T ss_pred cHHHHHhccCC-------------------------CCCHHHHHHHHHHhC------hHHHHHh--CccccccccCCC-c
Confidence 99999975321 011112222222211 2334443 566678888864 4
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
+.||||||||++||||++++|++++|||||+|||+.++..+.+.|+++.. .++|+++..|++. ..+.||+|++|++|
T Consensus 453 ~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~i~~l~~G 529 (544)
T TIGR01842 453 ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDKILVLQDG 529 (544)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999998753 4678888777763 56789999999999
Q ss_pred eEEEecChhhHHH
Q 000517 421 KIVYHGPQDHVLA 433 (1449)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1449)
++++.|+++++.+
T Consensus 530 ~i~~~g~~~~l~~ 542 (544)
T TIGR01842 530 RIARFGERDEVLA 542 (544)
T ss_pred EEEeeCCHHHHhh
Confidence 9999999988753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=312.16 Aligned_cols=207 Identities=23% Similarity=0.317 Sum_probs=165.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCeeeEEEECCccCCCC-----CCCceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD--PSLKVTGEVSYNGYKLEEF-----VPPKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1449)
.+|+|+|+.|++||+++|+||||||||||+++|+|.++ |+...+|+|.++|+++... ..++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCC
Confidence 58999999999999999999999999999999999986 3111389999999887432 1245799999999899
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc----cccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV----CADT 333 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~dt 333 (1449)
+.+||+||+.++.+..+.... .+ .+..++.+++.+|+.. ..++
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 144 (252)
T PRK14256 98 PAMSIYDNVIAGYKLNGRVNR---------SE------------------------ADEIVESSLKRVALWDEVKDRLKS 144 (252)
T ss_pred CcCcHHHHHHhHHHhcCCCCH---------HH------------------------HHHHHHHHHHHcCCchhhhHHhhC
Confidence 999999999876543211000 00 0012456778888753 2344
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.++ .||||||||++||++++.+|++++|||||+|||+.++.++.+.|+++.+ ++|+|++. |..+++.++||+
T Consensus 145 ~~~-----~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivs-H~~~~~~~~~d~ 216 (252)
T PRK14256 145 NAM-----ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVT-HNMQQAARVSDY 216 (252)
T ss_pred CcC-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEE-CCHHHHHhhCCE
Confidence 444 4999999999999999999999999999999999999999999999864 46666654 556788899999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000517 414 IILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~ 432 (1449)
+++|++|+++..|+.+++.
T Consensus 217 i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 217 TAFFYMGDLVECGETKKIF 235 (252)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988763
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=311.90 Aligned_cols=207 Identities=21% Similarity=0.317 Sum_probs=164.1
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC---CCceEEEEcCCCccCCCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV---PPKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 261 (1449)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|....+|+|+++|+++.+.. .++.++|++|++.+++ .|
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~t 94 (246)
T PRK14269 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KS 94 (246)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-cc
Confidence 5899999999999999999999999999999999997531112899999999876532 2457999999988776 69
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc----cccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV----CADTMVGN 337 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~dt~vg~ 337 (1449)
|+||+.++...++.... ..+ .+..++.+++.+||.. ..+..+
T Consensus 95 v~eni~~~~~~~~~~~~--------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~~~-- 140 (246)
T PRK14269 95 IYENISYAPKLHGMIKN--------KDE------------------------EEALVVDCLQKVGLFEEVKDKLKQNA-- 140 (246)
T ss_pred HHHHhhhHHhhcCcccC--------hHH------------------------HHHHHHHHHHHcCCChhhhHHhcCCc--
Confidence 99999986543221000 000 0112456788888853 233333
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL 417 (1449)
+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|++++. |..+++.+++|++++|
T Consensus 141 ---~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~t-H~~~~~~~~~d~i~~l 214 (246)
T PRK14269 141 ---LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVT-HNMQQGKRVADYTAFF 214 (246)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEe-cCHHHHHhhCcEEEEE
Confidence 45999999999999999999999999999999999999999999999853 56766654 5567788999999999
Q ss_pred eCCeEEEecChhhHH
Q 000517 418 AEGKIVYHGPQDHVL 432 (1449)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1449)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 215 HLGELIEFGESKEFF 229 (246)
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999988764
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=311.94 Aligned_cols=206 Identities=25% Similarity=0.354 Sum_probs=162.7
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CCCCeeeEEEECCccCCCC-----CCCceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD--PSLKVTGEVSYNGYKLEEF-----VPPKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1449)
.+|+|+|+++++||+++|+|||||||||||++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.++
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 58999999999999999999999999999999999853 5222389999999887431 1245799999998877
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc----cccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV----CADT 333 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~dt 333 (1449)
+ +||+||+.++....+.... + + .+..++.+++.+|+.. ..++
T Consensus 99 ~-~tv~enl~~~~~~~~~~~~-~--------~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 144 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKDK-Q--------V------------------------LDEAVEKSLKGASIWDEVKDRLHD 144 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCcH-H--------H------------------------HHHHHHHHHHHcCCchhHHHHHhc
Confidence 6 8999999987543221100 0 0 0012345677777642 2344
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++. |..+++.+.+|+
T Consensus 145 ~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~s-H~~~~~~~~~d~ 216 (252)
T PRK14239 145 SAL-----GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVT-RSMQQASRISDR 216 (252)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEE-CCHHHHHHhCCE
Confidence 444 4999999999999999999999999999999999999999999999853 46666654 556688899999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000517 414 IILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~ 432 (1449)
|++|++|++++.|+.+++.
T Consensus 217 i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 217 TGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988874
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=317.46 Aligned_cols=196 Identities=27% Similarity=0.396 Sum_probs=154.1
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---ccccceEEEEccCCCCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNIT 950 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lT 950 (1449)
+.+|+|+||++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 4599999999999999999999999999999999998654 58999999976532 234567999999988775 69
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccccc-------ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000517 951 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKD-------SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIF 1023 (1449)
Q Consensus 951 v~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-------~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~ill 1023 (1449)
|+||+.+.... ...+ .+++.++..++.+..+ +.... .+..||||||||++||++|+.+|++|+
T Consensus 93 v~e~l~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 93 IAENIRYGKPD-----ATDE----EVEEAAKKANIHDFIMSLPDGYDTLVGE-RGSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred HHHHhhccCCC-----CCHH----HHHHHHHHcChHHHHHhhccccceeecc-CCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999764211 1111 1223333333322211 11111 135799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1024 MDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1024 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|||||+|||+.++..+++.|++++ +|+|||+++|+++ ++ +.+|++++|. +|++++.|+.
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~-~G~i~~~~~~ 221 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQ-NGQVVEQGTH 221 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999987 7999999999986 34 4799999998 5899998875
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=308.64 Aligned_cols=195 Identities=29% Similarity=0.418 Sum_probs=160.9
Q ss_pred eEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCccccccceEEEEccCCCCC--CCCCHHHHHHHHH
Q 000517 882 GSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHS--PNITVEESVIFSA 959 (1449)
Q Consensus 882 ~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~~~~~~~~gyv~Q~d~~~--~~lTv~e~l~f~~ 959 (1449)
++|++||+++|+|+||||||||+++|+|..++ .+|+|.+||.+.. ..++.++|++|++.++ ..+|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP--AKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 46889999999999999999999999997665 4899999998753 2356799999998653 3489999998753
Q ss_pred HhccC-CCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 000517 960 WLRLA-PEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAI 1038 (1449)
Q Consensus 960 ~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~ 1038 (1449)
..... ........++.+.++++.+++.+..++.++ .||||||||++|||+|+.+|++|+|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 001112334568899999999887777654 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCCC
Q 000517 1039 VMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGK 1088 (1449)
Q Consensus 1039 i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~~ 1088 (1449)
+.+.|++++++|+|||++||+++ ++.+.+|+++++ + |++++.|+..+
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~~ 198 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQQ 198 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHHH
Confidence 99999999877999999999986 577889999988 4 89999998753
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=306.92 Aligned_cols=196 Identities=28% Similarity=0.388 Sum_probs=163.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC------CCceEEEEcCCCccC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV------PPKTSAYISQNDLHI 257 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1449)
..+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 46999999999999999999999999999999999999987 999999999875432 135799999999889
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGN 337 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~ 337 (1449)
+.+|+.||+.++....... ..++ ....++++++.+||.+..++.+.+
T Consensus 95 ~~~t~~~n~~~~~~~~~~~---------~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 141 (220)
T TIGR02982 95 GFLTARQNVQMALELQPNL---------SYQE------------------------ARERARAMLEAVGLGDHLDYYPHN 141 (220)
T ss_pred CCCCHHHHHHHHHHhccCC---------CHHH------------------------HHHHHHHHHHHcCChhhhhcChhh
Confidence 9999999999865432100 0000 011246688999998777777654
Q ss_pred cccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEE
Q 000517 338 AMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417 (1449)
Q Consensus 338 ~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL 417 (1449)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+..++|+|++.|++ . +.+.+|+|++|
T Consensus 142 -----lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~-~-~~~~~d~v~~l 214 (220)
T TIGR02982 142 -----LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN-R-ILDVADRIVHM 214 (220)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-H-HHhhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998765578888877765 3 56899999999
Q ss_pred eCCeE
Q 000517 418 AEGKI 422 (1449)
Q Consensus 418 ~~G~i 422 (1449)
.+|++
T Consensus 215 ~~g~~ 219 (220)
T TIGR02982 215 EDGKL 219 (220)
T ss_pred ECCEE
Confidence 99986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=315.10 Aligned_cols=196 Identities=27% Similarity=0.403 Sum_probs=156.3
Q ss_pred eeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc---ccccceEEEEccCCCCCCCCCH
Q 000517 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNITV 951 (1449)
Q Consensus 875 ~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTv 951 (1449)
.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.. ..+++.++|++|++.+++. |+
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv 93 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TI 93 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HH
Confidence 599999999999999999999999999999999998654 58999999976532 2356679999999887765 99
Q ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccc-c-----CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000517 952 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLV-G-----IPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1025 (1449)
Q Consensus 952 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v-g-----~~~~~~LSgGqrqRl~Ia~aL~~~p~illLD 1025 (1449)
+||+.+... ... ...+++.++.+++.+..+... | ......||||||||++||++|+.+|++|+||
T Consensus 94 ~~~~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllD 164 (229)
T cd03254 94 MENIRLGRP-----NAT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILD 164 (229)
T ss_pred HHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999976421 111 123444555555544332221 0 1123579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1026 EPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1026 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|||+|||+.++..+++.|++++ +|+|||++||+++ ++ +.+|++++|. +|++++.|+.
T Consensus 165 EP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~-~g~~~~~~~~ 221 (229)
T cd03254 165 EATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLD-DGKIIEEGTH 221 (229)
T ss_pred CccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEe-CCeEEEeCCH
Confidence 9999999999999999999985 5899999999986 34 5699999997 5899988864
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=316.29 Aligned_cols=215 Identities=24% Similarity=0.272 Sum_probs=172.7
Q ss_pred EEEEecceeeeecccchhccccccccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC---eeEEEEEEcC
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG---YVEGEIKISG 924 (1449)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~---~~~G~I~i~G 924 (1449)
.+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 16 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g 82 (265)
T PRK14252 16 KSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHP 82 (265)
T ss_pred eEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcC
Confidence 467777776542 236999999999999999999999999999999999976531 2589999999
Q ss_pred ccCc-------cccccceEEEEccCCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcc----cccccc
Q 000517 925 YPKV-------QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA----IKDSLV 993 (1449)
Q Consensus 925 ~~~~-------~~~~~~~~gyv~Q~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~v 993 (1449)
.+.. ...+++.++|++|++.+++. |++||+.+....... ......++.++++++.+++.+ ..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~- 158 (265)
T PRK14252 83 DNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRLGDL- 158 (265)
T ss_pred ccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHHhCC-
Confidence 7542 12346679999999988875 999999876433211 111223456778888888742 23333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEE
Q 000517 994 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELIL 1073 (1449)
Q Consensus 994 g~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~ 1073 (1449)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 159 ----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~ 232 (265)
T PRK14252 159 ----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAY 232 (265)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEE
Confidence 247999999999999999999999999999999999999999999999875 699999999986 57788999999
Q ss_pred EecCcEEEEecCC
Q 000517 1074 LKTGGRIIYCGPL 1086 (1449)
Q Consensus 1074 l~~gG~~v~~G~~ 1086 (1449)
|. +|+++..|+.
T Consensus 233 l~-~G~i~~~g~~ 244 (265)
T PRK14252 233 MY-MGELIEFGAT 244 (265)
T ss_pred EE-CCEEEEeCCH
Confidence 97 5899999875
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=315.99 Aligned_cols=212 Identities=28% Similarity=0.387 Sum_probs=168.8
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-----CCeeeEEEECCccCCCCCC---CceEEEEcCCCcc
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS-----LKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLH 256 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~-----~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~ 256 (1449)
.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|.++..... ++.++|++|++..
T Consensus 15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~ 94 (272)
T PRK13547 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQP 94 (272)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence 5899999999999999999999999999999999999874 1137999999988754322 3458999999876
Q ss_pred CCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccc
Q 000517 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVG 336 (1449)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg 336 (1449)
++.+||+||+.++......... .... +....++.+++.+||++..++.++
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~-----~~~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 144 (272)
T PRK13547 95 AFAFSAREIVLLGRYPHARRAG-----ALTH-------------------------RDGEIAWQALALAGATALVGRDVT 144 (272)
T ss_pred CCCCcHHHHHhhcccccccccc-----cCCH-------------------------HHHHHHHHHHHHcCcHhhhcCCcc
Confidence 6779999999875311000000 0000 001124668899999877777766
Q ss_pred ccccccCChhhhhhHHHHHHHh---------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhH
Q 000517 337 NAMRRGISGGQKKRLTTGEMIV---------GPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPET 407 (1449)
Q Consensus 337 ~~~~rGlSGGqrkRvsia~al~---------~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~ 407 (1449)
+ |||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++. |..+++
T Consensus 145 ~-----LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiis-H~~~~~ 218 (272)
T PRK13547 145 T-----LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIV-HDPNLA 218 (272)
T ss_pred c-----CCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEE-CCHHHH
Confidence 5 9999999999999999 599999999999999999999999999998764467776665 456678
Q ss_pred HhhcCeEEEEeCCeEEEecChhhHH
Q 000517 408 FDLFDDIILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 408 ~~~fD~v~lL~~G~iv~~G~~~~~~ 432 (1449)
.+++|++++|++|++++.|+.+++.
T Consensus 219 ~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 219 ARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHhCCEEEEEECCeEEEecCHHHHc
Confidence 8899999999999999999987763
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=312.27 Aligned_cols=205 Identities=22% Similarity=0.315 Sum_probs=163.5
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCC---CCCCCCeeeEEEECCccCCCCC-----CCceEEEEcCCCcc
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGN---LDPSLKVTGEVSYNGYKLEEFV-----PPKTSAYISQNDLH 256 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~---l~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 256 (1449)
++|+|+|+.+++|++++|+||||||||||+++|+|. .+|. ..+|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 589999999999999999999999999999999997 3331 13899999999875421 13569999999887
Q ss_pred CCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcc----cc
Q 000517 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVC----AD 332 (1449)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~----~d 332 (1449)
++ .||+||+.++....+.... +. .+..++++++.+||.+. .+
T Consensus 96 ~~-~tv~~nl~~~~~~~~~~~~----------~~-----------------------~~~~~~~~l~~~~l~~~~~~~~~ 141 (250)
T PRK14245 96 FP-KSIFENVAYGLRVNGVKDN----------AF-----------------------IRQRVEETLKGAALWDEVKDKLK 141 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH----------HH-----------------------HHHHHHHHHHHcCCCcchhhhhh
Confidence 76 6999999887543221100 00 01124567888888642 34
Q ss_pred ccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcC
Q 000517 333 TMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFD 412 (1449)
Q Consensus 333 t~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD 412 (1449)
+.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++. |...++.+.+|
T Consensus 142 ~~~~-----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivt-H~~~~~~~~~d 213 (250)
T PRK14245 142 ESAF-----ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK--DYTIVIVT-HNMQQAARVSD 213 (250)
T ss_pred CCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEe-CCHHHHHhhCC
Confidence 4444 4999999999999999999999999999999999999999999999842 56766654 55667889999
Q ss_pred eEEEEeCCeEEEecChhhHH
Q 000517 413 DIILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 413 ~v~lL~~G~iv~~G~~~~~~ 432 (1449)
++++|++|++++.|+++++.
T Consensus 214 ~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 214 KTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEEEEECCEEEEECCHHHHh
Confidence 99999999999999998874
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=318.71 Aligned_cols=208 Identities=24% Similarity=0.401 Sum_probs=169.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC---CCceEEEEcCCCccCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV---PPKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1449)
+++|+||||++.||+.+|++||||+||||+|++|-...+-+ +|.|++||++++... .|+.+|.||||..+|. -
T Consensus 551 k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-d 626 (790)
T KOG0056|consen 551 KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN-D 626 (790)
T ss_pred CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcceeec-c
Confidence 57999999999999999999999999999999999999887 999999999986543 3678999999877765 5
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
|+..|+.|+. |++.-|+...|+.+.+ .. =+++++++..+|+||+...
T Consensus 627 TI~yNIryak-------------------------~~AsneevyaAAkAA~-----IH---drIl~fPegY~t~VGERGL 673 (790)
T KOG0056|consen 627 TILYNIRYAK-------------------------PSASNEEVYAAAKAAQ-----IH---DRILQFPEGYNTRVGERGL 673 (790)
T ss_pred eeeeheeecC-------------------------CCCChHHHHHHHHHhh-----HH---HHHhcCchhhhhhhhhccc
Confidence 9999998752 1111112112211111 11 2467899999999998433
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
| |||||||||+|||+++..|.+++|||.||+||..+.++|..+|.+++. ++|.|+..|.- .+.-.+|.|+++++|
T Consensus 674 k-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRL--STivnAD~ILvi~~G 748 (790)
T KOG0056|consen 674 K-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRL--STIVNADLILVISNG 748 (790)
T ss_pred c-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeee--hheecccEEEEEeCC
Confidence 3 899999999999999999999999999999999999999999999985 56666655543 455679999999999
Q ss_pred eEEEecChhhHHH
Q 000517 421 KIVYHGPQDHVLA 433 (1449)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1449)
+|++.|.++|++.
T Consensus 749 ~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 749 RIVERGRHEELLK 761 (790)
T ss_pred eEeecCcHHHHHh
Confidence 9999999999975
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=312.22 Aligned_cols=206 Identities=25% Similarity=0.402 Sum_probs=160.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC---CCceEEEEcCCCccCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV---PPKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1449)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++ ..
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NR 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cc
Confidence 35899999999999999999999999999999999999987 999999998765432 145699999998766 47
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHh--CCCcccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKIL--GLDVCADTMVGNA 338 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~l--gL~~~~dt~vg~~ 338 (1449)
||+||+.+... . ...+... ..... ...+..++.+ |++...+..+++
T Consensus 91 tv~~nl~~~~~--~--~~~~~~~---------------------~~~~~------~~~~~~l~~l~~~~~~~~~~~~~~- 138 (237)
T cd03252 91 SIRDNIALADP--G--MSMERVI---------------------EAAKL------AGAHDFISELPEGYDTIVGEQGAG- 138 (237)
T ss_pred hHHHHhhccCC--C--CCHHHHH---------------------HHHHH------cCcHHHHHhCcccccchhhcCCCc-
Confidence 99999987421 1 0000000 00000 1123345555 555444555544
Q ss_pred ccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEe
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~ 418 (1449)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++. .+.|+|++.|++ +++ ..+|++++|+
T Consensus 139 ----LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~~-~~~-~~~d~v~~l~ 210 (237)
T cd03252 139 ----LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--AGRTVIIIAHRL-STV-KNADRIIVME 210 (237)
T ss_pred ----CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCH-HHH-HhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999985 367877776655 455 5699999999
Q ss_pred CCeEEEecChhhHHH
Q 000517 419 EGKIVYHGPQDHVLA 433 (1449)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1449)
+|++++.|+.+++.+
T Consensus 211 ~G~i~~~~~~~~~~~ 225 (237)
T cd03252 211 KGRIVEQGSHDELLA 225 (237)
T ss_pred CCEEEEEcCHHHHHh
Confidence 999999999887653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=315.95 Aligned_cols=205 Identities=22% Similarity=0.309 Sum_probs=161.1
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC--CeeeEEEECCccCCCC-----CCCceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL--KVTGEVSYNGYKLEEF-----VPPKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1449)
.+|+|+|++|++|++++|+|||||||||||++|+|.+++.. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 106 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPF 106 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccc
Confidence 48999999999999999999999999999999999987310 1289999999876421 1135699999998888
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC----ccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD----VCADT 333 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~dt 333 (1449)
+ .||+||+.+.+...+.. . + . +..++.+++.+++. +..|+
T Consensus 107 ~-~tv~enl~~~~~~~~~~-~-----~----~-------------------------~~~~~~~l~~~~l~~~l~~~~~~ 150 (269)
T PRK14259 107 P-KSIYENIAFGARINGYT-G-----D----M-------------------------DELVERSLRKAAVWDECKDKLNE 150 (269)
T ss_pred h-hhHHHHHhhhhhhcCCc-H-----H----H-------------------------HHHHHHHHHHhCCcchhhhhhCC
Confidence 7 59999999876432210 0 0 0 01123456666653 23455
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.+. .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++ +|...++.++||+
T Consensus 151 ~~~-----~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiiv-tH~~~~~~~~~d~ 222 (269)
T PRK14259 151 SGY-----SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIV-THNMQQAVRVSDM 222 (269)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEE-eCCHHHHHHhcCE
Confidence 544 4999999999999999999999999999999999999999999999853 5666655 5556788999999
Q ss_pred EEEEeC-----------CeEEEecChhhHHH
Q 000517 414 IILMAE-----------GKIVYHGPQDHVLA 433 (1449)
Q Consensus 414 v~lL~~-----------G~iv~~G~~~~~~~ 433 (1449)
+++|++ |++++.|+++++.+
T Consensus 223 i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 223 TAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EEEEeccccccccccccceEEEeCCHHHHHh
Confidence 999996 67899999988753
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=305.68 Aligned_cols=192 Identities=24% Similarity=0.416 Sum_probs=160.6
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCC-------CCceEEEEcCCCccCCCCC
Q 000517 189 HVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV-------PPKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 261 (1449)
|+|+++++ |+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999987 999999998764211 1357999999998899999
Q ss_pred HHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccc
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~r 341 (1449)
++||+.+..... .. .. .+..++.+++.+||++..++.+++
T Consensus 92 ~~~~l~~~~~~~---~~--------~~-------------------------~~~~~~~~l~~~~l~~~~~~~~~~---- 131 (214)
T cd03297 92 VRENLAFGLKRK---RN--------RE-------------------------DRISVDELLDLLGLDHLLNRYPAQ---- 131 (214)
T ss_pred HHHHHHHHHhhC---CH--------HH-------------------------HHHHHHHHHHHcCCHhHhhcCccc----
Confidence 999998764211 00 00 011245678899998777777665
Q ss_pred cCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCCe
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G~ 421 (1449)
||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++. |..+++.+++|++++|++|+
T Consensus 132 -LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s-H~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 132 -LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT-HDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEe-cCHHHHHHhcCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999998764466766654 55677889999999999999
Q ss_pred EEEec
Q 000517 422 IVYHG 426 (1449)
Q Consensus 422 iv~~G 426 (1449)
++..|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98775
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=326.18 Aligned_cols=207 Identities=24% Similarity=0.360 Sum_probs=175.6
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCC--eeEEEEEEcCccCcc-------ccccceEEEEccCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSG--YVEGEIKISGYPKVQ-------ETFARVSGYCEQTDI 944 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~--~~~G~I~i~G~~~~~-------~~~~~~~gyv~Q~d~ 944 (1449)
..+++||||++.+||++||+|.|||||||+.++|.|..+.+ ..+|+|.++|.+... ..+.+.++|++|++.
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 57999999999999999999999999999999999976543 357999999986421 123467999999974
Q ss_pred --CCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000517 945 --HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSII 1022 (1449)
Q Consensus 945 --~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~il 1022 (1449)
+.|.+|+.+-+.-...++... ..++..+++.++|+.+||.+-... ...+++||||||||+.||+||+.+|++|
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~--~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LL 176 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKG--SRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLL 176 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEE
Confidence 567789988887665555432 366777889999999999876554 2235689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCCC
Q 000517 1023 FMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1023 lLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~~ 1087 (1449)
++||||++||+.++.+|.++|+++.+ .|.++|+||||+.. +.+.+|++++|. +|++++.|+..
T Consensus 177 IaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V-va~~aDrv~Vm~-~G~iVE~G~~~ 240 (539)
T COG1123 177 IADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMY-KGEIVETGPTE 240 (539)
T ss_pred EECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH-HHHhcCeEEEEE-CCEEEEecCHH
Confidence 99999999999999999999999974 59999999999974 788999999998 59999999974
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=310.41 Aligned_cols=206 Identities=27% Similarity=0.380 Sum_probs=162.7
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--CCCeeeEEEECCccCCCC-----CCCceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDP--SLKVTGEVSYNGYKLEEF-----VPPKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1449)
++|+|+|+++++||+++|+|||||||||||++|+|.+++ ....+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 589999999999999999999999999999999998763 112389999999987531 1245799999998877
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC----ccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD----VCADT 333 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~dt 333 (1449)
+ +||+||+.++....+.... .+ .+..++.+++.+++. +..++
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~---------~~------------------------~~~~~~~~l~~~~l~~~l~~~~~~ 142 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK---------KK------------------------LDEIVEKSLKGAALWDEVKDRLKK 142 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH---------HH------------------------HHHHHHHHHHHcCCchhhHHHHhc
Confidence 7 8999999987543321100 00 001234456666664 23345
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.+++ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++. |..+++.+.+|+
T Consensus 143 ~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~s-H~~~~~~~~~d~ 214 (250)
T PRK14240 143 SALG-----LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DYTIVIVT-HNMQQASRISDK 214 (250)
T ss_pred CCCC-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEE-eCHHHHHhhCCE
Confidence 5544 999999999999999999999999999999999999999999999843 56766655 556688899999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000517 414 IILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~ 432 (1449)
+++|++|+++..|+.+++.
T Consensus 215 v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 215 TAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=298.35 Aligned_cols=160 Identities=24% Similarity=0.487 Sum_probs=141.8
Q ss_pred eeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc----ccccceEEEEccCC---CCCCC
Q 000517 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ----ETFARVSGYCEQTD---IHSPN 948 (1449)
Q Consensus 876 iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~----~~~~~~~gyv~Q~d---~~~~~ 948 (1449)
+|+++|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|+. .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP--ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 89999999999999999999999999999999998664 58999999987542 23456799999984 57788
Q ss_pred CCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000517 949 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028 (1449)
Q Consensus 949 lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPT 1028 (1449)
+|++||+.+... ||||||||++||++|+.+|++|+|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999876321 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcE
Q 000517 1029 TGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079 (1449)
Q Consensus 1029 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~ 1079 (1449)
+|||+.++..+.+.|+++.++|+|+|+++|+++ ++.+.+|++++|.+ |+
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~-G~ 181 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYE-GR 181 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecC-Cc
Confidence 999999999999999999777899999999975 57788999999974 65
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=308.11 Aligned_cols=191 Identities=23% Similarity=0.283 Sum_probs=157.5
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcC--c--cCcc---c---c-ccceEEEEccC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISG--Y--PKVQ---E---T-FARVSGYCEQT 942 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G--~--~~~~---~---~-~~~~~gyv~Q~ 942 (1449)
..+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++| . +... . . .++.+||++|+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 98 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQF 98 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecc
Confidence 4699999999999999999999999999999999998654 479999984 2 3211 1 1 23568999999
Q ss_pred CCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000517 943 DIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI-KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSI 1021 (1449)
Q Consensus 943 d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~i 1021 (1449)
+.+++.+||.|++.+..... ........+.+.++++.++|.+. .+..+ ..||||||||++||++|+.+|++
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrl~laral~~~p~l 170 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPP-----ATFSGGEQQRVNIARGFIADYPI 170 (224)
T ss_pred cccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999998764332 12233345677889999999763 35443 47999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEe
Q 000517 1022 IFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLK 1075 (1449)
Q Consensus 1022 llLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~ 1075 (1449)
|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+...+|+++.+.
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 171 LLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 9999999999999999999999999877999999999964 3556899988763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=345.59 Aligned_cols=204 Identities=25% Similarity=0.286 Sum_probs=168.7
Q ss_pred cceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcC-----------------------ccC--
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISG-----------------------YPK-- 927 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G-----------------------~~~-- 927 (1449)
++.+|+|+|+++++||+++|+|||||||||||++|+|.....+.+|+|.++| .++
T Consensus 12 ~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 3469999999999999999999999999999999999742012589999972 111
Q ss_pred --------cc---ccccceEEEEccC-CCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccC
Q 000517 928 --------VQ---ETFARVSGYCEQT-DIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995 (1449)
Q Consensus 928 --------~~---~~~~~~~gyv~Q~-d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~ 995 (1449)
.. ...++.+||++|+ +.+++.+||+|++.+...... ...++.++++.++++.+||.+..+..++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~- 167 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YEGKEAVGRAVDLIEMVQLSHRITHIAR- 167 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCcc-
Confidence 00 1235679999997 677888999999988654321 2234445678999999999887777654
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCccHHHHHhcCeEEEE
Q 000517 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILL 1074 (1449)
Q Consensus 996 ~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~p~~~~~~~~d~~~~l 1074 (1449)
.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+++|++. .+.+.+|++++|
T Consensus 168 ----~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~~l 242 (520)
T TIGR03269 168 ----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAIWL 242 (520)
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEE
Confidence 7999999999999999999999999999999999999999999999965 4899999999986 466789999999
Q ss_pred ecCcEEEEecCC
Q 000517 1075 KTGGRIIYCGPL 1086 (1449)
Q Consensus 1075 ~~gG~~v~~G~~ 1086 (1449)
. +|++++.|+.
T Consensus 243 ~-~G~i~~~g~~ 253 (520)
T TIGR03269 243 E-NGEIKEEGTP 253 (520)
T ss_pred e-CCEEeeecCH
Confidence 7 5899998875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=311.85 Aligned_cols=203 Identities=21% Similarity=0.321 Sum_probs=161.0
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-----CCCCeeeEEEECCccCCCCC-----CCceEEEEcCCC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD-----PSLKVTGEVSYNGYKLEEFV-----PPKTSAYISQND 254 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~-----~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d 254 (1449)
.+|+|+|+.+++|++++|+|||||||||||++|+|..+ |+ +|+|.++|+++.... .++.++|++|++
T Consensus 35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 111 (268)
T PRK14248 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS---EGEILYEGLNILDSNINVVNLRREIGMVFQKP 111 (268)
T ss_pred eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC---ceEEEECCEEcccccccHHHHhccEEEEecCC
Confidence 58999999999999999999999999999999999864 45 899999998875321 245799999998
Q ss_pred ccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC----cc
Q 000517 255 LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD----VC 330 (1449)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~----~~ 330 (1449)
.+++. ||+||+.+.....+.... .. .+..++.+++.+|+. +.
T Consensus 112 ~~~~~-tv~enl~~~~~~~~~~~~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~ 157 (268)
T PRK14248 112 NPFPK-SIYNNITHALKYAGERRK---------SV------------------------LDEIVEESLTKAALWDEVKDR 157 (268)
T ss_pred ccCcc-cHHHHHHHHHHhcCCCcH---------HH------------------------HHHHHHHHHHHcCCCcchHHH
Confidence 88874 999999886432211000 00 001134456667764 22
Q ss_pred ccccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhh
Q 000517 331 ADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL 410 (1449)
Q Consensus 331 ~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~ 410 (1449)
.++.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++. |..+++.++
T Consensus 158 ~~~~~~~-----LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~t-H~~~~~~~~ 229 (268)
T PRK14248 158 LHSSALS-----LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVT-HNMQQALRV 229 (268)
T ss_pred HhcCccc-----CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEE-eCHHHHHHh
Confidence 3455544 999999999999999999999999999999999999999999999854 46666655 456678899
Q ss_pred cCeEEEEeCCeEEEecChhhHH
Q 000517 411 FDDIILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 411 fD~v~lL~~G~iv~~G~~~~~~ 432 (1449)
+|+|++|++|++++.|+.+++.
T Consensus 230 ~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 230 SDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999988764
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=377.95 Aligned_cols=213 Identities=23% Similarity=0.379 Sum_probs=172.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---------------------------------------
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS--------------------------------------- 224 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--------------------------------------- 224 (1449)
.+||+|+|++|+||+.+||+||||||||||+++|.|+++|.
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999999982
Q ss_pred ------------CCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCCCHHHHHHHHHHccCCCCchhhhhHhcHHH
Q 000517 225 ------------LKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRRE 289 (1449)
Q Consensus 225 ------------~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e 289 (1449)
...+|+|++||+++++... ++.++||+|++.+| +.|+||||.++..
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~------------------ 1321 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKE------------------ 1321 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCC------------------
Confidence 0138999999999987653 67899999998776 5899999998621
Q ss_pred HhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCccccccccccccccCChhhhhhHHHHHHHhCCCcEEEEeCC
Q 000517 290 KEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEI 369 (1449)
Q Consensus 290 ~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEP 369 (1449)
+.+.++..+++...+.. + .+ -.|++..||.||+. ...||||||||++|||||+++|+||+||||
T Consensus 1322 -------~at~eeI~~A~k~A~l~-----~-fI--~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLLDEa 1385 (1466)
T PTZ00265 1322 -------DATREDVKRACKFAAID-----E-FI--ESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLLDEA 1385 (1466)
T ss_pred -------CCCHHHHHHHHHHcCCH-----H-HH--HhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 11122223333322221 1 22 24899999999964 345999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeC----CeEE-EecChhhHHH
Q 000517 370 TNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE----GKIV-YHGPQDHVLA 433 (1449)
Q Consensus 370 tsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~----G~iv-~~G~~~~~~~ 433 (1449)
||+||+.+...|.+.|+++....++|+|+..|+. ++.+.||+|++|++ |+++ .+|+++++++
T Consensus 1386 TSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1386 TSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9999999999999999987533468888876654 56788999999999 9955 8999999863
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=304.33 Aligned_cols=182 Identities=23% Similarity=0.318 Sum_probs=154.9
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc--ccccceEEEEccCCCCCCCCCH
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ--ETFARVSGYCEQTDIHSPNITV 951 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 951 (1449)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|+..+++..||
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 91 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTL 91 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeeEEECCCccccCHHHHHhheEEeccccccCcCCCH
Confidence 4699999999999999999999999999999999998765 58999999987532 3456789999999888889999
Q ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000517 952 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031 (1449)
Q Consensus 952 ~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPTsgL 1031 (1449)
+||+.+.... . .. ...++++++.+++.+..+..++ .||||||||++|||+|+.+|++|+|||||+||
T Consensus 92 ~~~~~~~~~~--~----~~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~laral~~~p~~lilDEP~~~L 158 (200)
T PRK13540 92 RENCLYDIHF--S----PG--AVGITELCRLFSLEHLIDYPCG-----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVAL 158 (200)
T ss_pred HHHHHHHHhc--C----cc--hHHHHHHHHHcCCchhhhCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence 9999876421 1 11 2357889999999876666644 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEE
Q 000517 1032 DARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELI 1072 (1449)
Q Consensus 1032 D~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~ 1072 (1449)
|+.++..+.+.|+++++.|+|||+++|++. ....+|...
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 159 DELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 999999999999998777999999999975 345566543
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=309.68 Aligned_cols=206 Identities=23% Similarity=0.377 Sum_probs=163.2
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--CCCeeeEEEECCccCCCC-----CCCceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDP--SLKVTGEVSYNGYKLEEF-----VPPKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1449)
++|+|+|+++++||+++|+|||||||||||++|+|.++| ....+|+|.++|.++... ..++.++|++|++.++
T Consensus 17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14262 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF 96 (250)
T ss_pred eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccC
Confidence 589999999999999999999999999999999999874 111389999999877531 1245799999998877
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCc----cccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV----CADT 333 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~----~~dt 333 (1449)
+ +||+||+.++....+.... .+ .+..++.+++.+|+.. ..+.
T Consensus 97 ~-~tv~e~l~~~~~~~~~~~~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 142 (250)
T PRK14262 97 P-MSIYDNVAFGPRIHGVKSK---------HK------------------------LDRIVEESLKKAALWDEVKSELNK 142 (250)
T ss_pred c-ccHHHHHHHHHHHcCCCcH---------HH------------------------HHHHHHHHHHHcCCCchhHHHHhC
Confidence 7 8999999986543211100 00 0012345677777753 2344
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.++ .||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+ ++|++++. |..+++.+++|+
T Consensus 143 ~~~-----~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~s-H~~~~~~~~~d~ 214 (250)
T PRK14262 143 PGT-----RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVT-HNIGQAIRIADY 214 (250)
T ss_pred Chh-----hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEe-CCHHHHHHhCCE
Confidence 443 4999999999999999999999999999999999999999999999853 56666655 455678899999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000517 414 IILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~ 432 (1449)
+++|++|+++..|+.+++.
T Consensus 215 i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 215 IAFMYRGELIEYGPTREIV 233 (250)
T ss_pred EEEEECCEEEEecCHHHHH
Confidence 9999999999999988774
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=298.83 Aligned_cols=158 Identities=30% Similarity=0.453 Sum_probs=141.6
Q ss_pred ceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCcc-----ccccceEEEEccCCCCCCC
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-----ETFARVSGYCEQTDIHSPN 948 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~~-----~~~~~~~gyv~Q~d~~~~~ 948 (1449)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 4699999999999999999999999999999999997654 58999999986532 2456789999999988888
Q ss_pred CCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000517 949 ITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028 (1449)
Q Consensus 949 lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~illLDEPT 1028 (1449)
.|++|++.+. ||||||||++||++|+.+|++++|||||
T Consensus 91 ~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 91 LTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred CCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 9999987531 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCccHHHHHhcCeEEEEec
Q 000517 1029 TGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 1029 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~p~~~~~~~~d~~~~l~~ 1076 (1449)
+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~ 176 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD 176 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC
Confidence 999999999999999999877 899999999975 46668999999975
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=273.35 Aligned_cols=205 Identities=26% Similarity=0.378 Sum_probs=175.1
Q ss_pred cccceeeccceeEEeCCeEEEEecCCCCChhHHHhhhcCCCCCCeeEEEEEEcCccCc-------c--ccccceEEEEcc
Q 000517 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV-------Q--ETFARVSGYCEQ 941 (1449)
Q Consensus 871 ~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKSTLl~~L~g~~~~~~~~G~I~i~G~~~~-------~--~~~~~~~gyv~Q 941 (1449)
|+..++|.||+++.+.||.+.++||||||||||+++|.-...+ .+|+..|.|...+ + ..+|+.+|.|+|
T Consensus 12 yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p--~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfq 89 (242)
T COG4161 12 YGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQ 89 (242)
T ss_pred cccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC--CCCeEEecccccccccCccHHHHHHHHHhhhhhhh
Confidence 4556799999999999999999999999999999999765444 4799888875311 1 346788999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000517 942 TDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSI 1021 (1449)
Q Consensus 942 ~d~~~~~lTv~e~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~Ia~aL~~~p~i 1021 (1449)
+..++|.+||.|||.-+. +|. ...++++.+.+..++++.+.|.+.+|+.. -.|||||+|||+|||||+.+|++
T Consensus 90 qy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p-----lhlsggqqqrvaiaralmmkpqv 162 (242)
T COG4161 90 QYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYP-----LHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred hhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCc-----eecccchhhhHHHHHHHhcCCcE
Confidence 999999999999997542 222 23566777788999999999999999863 37999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCccHHHHHhcCeEEEEecCcEEEEecCC
Q 000517 1022 IFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1022 llLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~p~~~~~~~~d~~~~l~~gG~~v~~G~~ 1086 (1449)
|++||||+.||++-..++.+.|++++..|.|-++++|.... .-+.+.+++.|. +|+|++.|+.
T Consensus 163 llfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme-~g~ive~g~a 225 (242)
T COG4161 163 LLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYME-NGHIVEQGDA 225 (242)
T ss_pred EeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeee-cCeeEeecch
Confidence 99999999999999999999999999999999999997643 345678899987 6999999985
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=351.62 Aligned_cols=209 Identities=24% Similarity=0.437 Sum_probs=171.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCCCeeeEEEECCccCCCCCC---CceEEEEcCCCccCCCC
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1449)
.++|+|+|+.+++|+.++|+|+||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+| +.
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~ 420 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDVVLF-ND 420 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCcccc-cc
Confidence 35899999999999999999999999999999999999998 9999999998876543 46799999988655 56
Q ss_pred CHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCCcccccccccccc
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~~~~dt~vg~~~~ 340 (1449)
|++|||.++.. ++.+.++..+++...+.. +.++ .|++..||.+|+. .
T Consensus 421 Ti~~Ni~~~~~------------------------~~~~~~~i~~~l~~~~l~------~~i~--~lp~gldt~i~~~-g 467 (571)
T TIGR02203 421 TIANNIAYGRT------------------------EQADRAEIERALAAAYAQ------DFVD--KLPLGLDTPIGEN-G 467 (571)
T ss_pred cHHHHHhcCCC------------------------CCCCHHHHHHHHHHcChH------HHHH--hCcCcccceecCC-C
Confidence 99999986420 011223333333333322 2222 3677789999975 4
Q ss_pred ccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCeEEEEeCC
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~v~lL~~G 420 (1449)
+.||||||||++|||+++.+|++++||||||+||+.++..|.+.|++.. .++|+|+..|++ +..+.||+|++|++|
T Consensus 468 ~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~--~~~~~~D~ii~l~~g 543 (571)
T TIGR02203 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRL--STIEKADRIVVMDDG 543 (571)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhh--HHHHhCCEEEEEeCC
Confidence 5699999999999999999999999999999999999999999999874 468888877765 567899999999999
Q ss_pred eEEEecChhhHHH
Q 000517 421 KIVYHGPQDHVLA 433 (1449)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1449)
+++..|+++++.+
T Consensus 544 ~i~~~g~~~~l~~ 556 (571)
T TIGR02203 544 RIVERGTHNELLA 556 (571)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999998863
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=309.34 Aligned_cols=207 Identities=25% Similarity=0.366 Sum_probs=163.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCC--CeeeEEEECCccCCCC-----CCCceEEEEcCCCccC
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL--KVTGEVSYNGYKLEEF-----VPPKTSAYISQNDLHI 257 (1449)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1449)
++|+|+|+.|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14272 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPF 97 (252)
T ss_pred EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccC
Confidence 58999999999999999999999999999999999987631 1379999999887531 1245799999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCchhhhhHhcHHHHhcCCCCCCChHHHHHHHhhhhcchhhhHHHHHHHhCCC----ccccc
Q 000517 258 AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLD----VCADT 333 (1449)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~~~il~~lgL~----~~~dt 333 (1449)
+.+|++||+.++....+.... + +. ....+..++.+++. +..++
T Consensus 98 ~~~t~~enl~~~~~~~~~~~~-~---~~-----------------------------~~~~~~~l~~~~l~~~l~~~~~~ 144 (252)
T PRK14272 98 PTMSVFDNVVAGLKLAGIRDR-D---HL-----------------------------MEVAERSLRGAALWDEVKDRLKT 144 (252)
T ss_pred cCCCHHHHHHHHHHhcCCCCH-H---HH-----------------------------HHHHHHHHHHcCcchhhhhhhcC
Confidence 999999999876543211000 0 00 00123344445442 33455
Q ss_pred cccccccccCChhhhhhHHHHHHHhCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEEecCchhHHhhcCe
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~vg~~~~rGlSGGqrkRvsia~al~~~p~vllLDEPtsgLDs~~~~~i~~~L~~l~~~~~~t~vi~~~q~~~~~~~~fD~ 413 (1449)
.+++ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++. |...++.+.+|+
T Consensus 145 ~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~s-H~~~~~~~~~d~ 216 (252)
T PRK14272 145 PATG-----LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVT-HNMHQAARVSDT 216 (252)
T ss_pred Cccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEe-CCHHHHHHhCCE
Confidence 5554 999999999999999999999999999999999999999999999853 56666654 556688889999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 000517 414 IILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 414 v~lL~~G~iv~~G~~~~~~ 432 (1449)
|++|++|++++.|+++++.
T Consensus 217 i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 217 TSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1449 | ||||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-12 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-11 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-11 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-11 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-10 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-10 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 4e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 5e-10 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 8e-10 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 9e-10 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 9e-10 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-09 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-09 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-09 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-05 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-09 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 1e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-07 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-08 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-08 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 6e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 6e-08 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 7e-08 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 7e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-07 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 1e-07 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 1e-07 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-07 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-07 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 2e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 2e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 5e-07 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 5e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 5e-07 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 6e-07 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-06 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 9e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-06 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-06 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-06 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 3e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-04 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 8e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 8e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 4e-05 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 5e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-05 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-04 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-04 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 1e-04 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-04 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 2e-04 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-04 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 3e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 4e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 5e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 5e-04 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-04 |
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1449 | |||
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-26 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 4e-17 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 5e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-14 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 6e-24 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 4e-18 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 4e-23 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-18 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 4e-23 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 9e-15 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 8e-20 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-11 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-11 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-11 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-17 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-09 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-13 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 9e-08 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-17 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-15 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-14 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-10 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 9e-17 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-16 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-14 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 3e-14 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 4e-14 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 3e-04 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 5e-14 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-07 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-04 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 3e-09 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 5e-06 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 3e-09 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 8e-09 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-05 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-08 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-05 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 2e-08 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-06 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-08 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-08 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 7e-06 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 5e-08 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-07 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 6e-08 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-07 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-05 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-04 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 6e-08 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 6e-04 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 7e-08 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-04 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-07 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 6e-07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-06 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 8e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-06 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 4e-06 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 8e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 5e-06 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 7e-06 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 1e-05 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 1e-05 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 3e-05 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 6e-05 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 3e-05 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 4e-05 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 5e-05 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 6e-05 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-04 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 2e-04 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 4e-04 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 7e-04 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 7e-04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 8e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 8e-04 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 9e-04 |
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 50/240 (20%), Positives = 91/240 (37%), Gaps = 43/240 (17%)
Query: 859 DTPLEMRERGFA-DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGY 915
+ L + GF + L + L G + A++G +G GK+TL+D+L G R G
Sbjct: 2 NKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 916 VEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESV---------IFSAWLRLAPE 966
+E + G+ Q +V + V F+
Sbjct: 62 IE--------------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKP------ 101
Query: 967 INSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1026
+ + L+ + L + LS QR+ + IA + + +I +DE
Sbjct: 102 --KSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDE 154
Query: 1027 PTTGLDARAAAIVMRAVKNIV-NTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
PT+ LD IV+ + ++ + T+V T HQP+ + ++ +LL + G
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLN--KQNFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 4e-17
Identities = 40/253 (15%), Positives = 82/253 (32%), Gaps = 62/253 (24%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+ ++ L G + +LG GCGKST L L G P G++ +
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY----------Q 66
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
+ ++ Q +V + V +M G ++
Sbjct: 67 SIGFVPQFFSSPFAYSVLDIV---------------LM---------GRST------HIN 96
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMI----VGPT 361
+ L L L A + +SGGQ++ + +I
Sbjct: 97 TFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLI----LIARAIASEC 147
Query: 362 KALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISL--LQPAPETFDLFDDIILMAE 419
K + +DE T+ LD + +++ + L + T + + + + +L+ +
Sbjct: 148 KLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV---VAIANKTLLLNK 204
Query: 420 GKIVYHGPQDHVL 432
+ G ++L
Sbjct: 205 QNFKF-GETRNIL 216
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 5e-25
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 24/213 (11%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFA--R 934
++ + G + L+G +GAGKTT + +++ + +SG + + G V+E +
Sbjct: 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEVRK 88
Query: 935 VSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVG 994
+ Y + N+ E + F A +S E V E L V
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS 145
Query: 995 IPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIV 1054
S ++L IA L+ NP + +DEPT+GLD A V + +K G TI+
Sbjct: 146 -----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200
Query: 1055 CTIHQPSIDIFEAFDEL---ILLKTGGRIIYCG 1084
+ H + L I L G I+ G
Sbjct: 201 VSSH-----NMLEVEFLCDRIALIHNGTIVETG 228
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 55/262 (20%), Positives = 87/262 (33%), Gaps = 70/262 (26%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
E L +S ++ G + L+GP G GK+T L+ +S + PS +G V+ G
Sbjct: 25 IGKKEI----LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGK 77
Query: 237 KLEE----------FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVS 286
+ E ++P + AY M E + F A S E
Sbjct: 78 NVVEEPHEVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYASSSSE------- 122
Query: 287 RREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGG 346
E + +I GL V S G
Sbjct: 123 IEEM---------------------------VERATEIAGLGEKIKDRVST-----YSKG 150
Query: 347 QKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALIS--LLQPA 404
++L ++ + +DE T+GLD A ++ ++Q T L+S +
Sbjct: 151 MVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEV 209
Query: 405 PETFDLFDDIILMAEGKIVYHG 426
L D I L+ G IV G
Sbjct: 210 EF---LCDRIALIHNGTIVETG 228
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 6e-24
Identities = 51/238 (21%), Positives = 107/238 (44%), Gaps = 21/238 (8%)
Query: 859 DTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGR--KTSGYV 916
+++ + G + +L ++ + G L G++GAGKTTL+++L TSG V
Sbjct: 19 HMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 917 E--GEIKISGYPKVQETFARVSGYCEQTDIH---SPNITVEESVI--FSAWLRLAPEINS 969
G++ + + G+ + V + VI + + +I+
Sbjct: 79 NLFGKMPGKVGYSAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDD 136
Query: 970 KTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT 1029
+ + E +++L+ + + A +G LST +++R+ IA L+ P ++ +DEP
Sbjct: 137 EIRNE-AHQLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 1030 GLDARAAAIVMRAVKNIVNTGR--TIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
GLD A ++ + ++ ++ ++ H +I F +++LLK G+ I G
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLK-DGQSIQQGA 246
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 4e-18
Identities = 49/265 (18%), Positives = 93/265 (35%), Gaps = 65/265 (24%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE----- 240
IL +S + G +L G G GK+T L L+ + +G V+ G +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSA 92
Query: 241 --------FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEA 292
FV + V + V S + +G ++ + +
Sbjct: 93 ETVRQHIGFVSHSLLEKFQEG------ERVIDVV-ISGAFKSIGVYQD----IDDEIRN- 140
Query: 293 GIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLT 352
+ +LK++G+ A +G +S G+K+R+
Sbjct: 141 ------------------------EAHQLLKLVGMSAKAQQYIGY-----LSTGEKQRV- 170
Query: 353 TGEMI----VGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETF 408
MI +G + L +DE GLD +++ + L + A+I + E
Sbjct: 171 ---MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEIT 227
Query: 409 DLFDDIILMAEGKIVYHGPQDHVLA 433
F I+L+ +G+ + G + +L
Sbjct: 228 ANFSKILLLKDGQSIQQGAVEDILT 252
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 4e-23
Identities = 42/206 (20%), Positives = 83/206 (40%), Gaps = 25/206 (12%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFARVS 936
+T ++ G + G +G GKTTL+ ++ + G EI +G P + + ++
Sbjct: 27 RITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG----EIIYNGVP-ITKVKGKI- 80
Query: 937 GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIP 996
+ + I I+VE+ + A L K + + LE++E+ +K
Sbjct: 81 FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK----- 130
Query: 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV-NTGRTIVC 1055
+ LS +R+ +A L+ N I +D+P +D + V++++ I+ G I+
Sbjct: 131 -LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 189
Query: 1056 TIHQPSIDIFEAFDELILLKTGGRII 1081
+ D L I
Sbjct: 190 SRE-----ELSYCDVNENLHKYSTKI 210
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 2e-18
Identities = 37/243 (15%), Positives = 83/243 (34%), Gaps = 64/243 (26%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE------ 240
L ++ ++ G + GP G GK+T LK +S L P GE+ YNG + +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGKIF 81
Query: 241 FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI 300
F+P + +++V + + A GV + +M+
Sbjct: 82 FLPEEIIVP--------RKISVEDYLKAVASLYGVKVNKNEIMDA--------------- 118
Query: 301 DTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGP 360
++++ V +K+ L +S G +R+ ++
Sbjct: 119 ---LESVEVLDLKKKLGE------------------------LSQGTIRRVQLASTLLVN 151
Query: 361 TKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420
+ +D+ +D + ++++ I +++ + S E D + +
Sbjct: 152 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS-----REELSYCDVNENLHKY 206
Query: 421 KIV 423
Sbjct: 207 STK 209
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 4e-23
Identities = 50/234 (21%), Positives = 90/234 (38%), Gaps = 34/234 (14%)
Query: 864 MRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG-RKTSGYVE-GEIK 921
M+ + A+ L ++G +R G + L+G +GAGK+TL+ +AG G ++
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQP 62
Query: 922 ISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLE 981
+ + + A Y Q V + L KT+ E +N+V
Sbjct: 63 LEAWSATK--LALHRAYLSQQQTPPFATPVWHYL----TLHQHD----KTRTELLNDVAG 112
Query: 982 TIELDAIKDSLVGIPGVNGLSTEQRKRLTIA-------VELVANPSIIFMDEPTTGLDAR 1034
+ LD N LS + +R+ +A + ++ +DEP LD
Sbjct: 113 ALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 167
Query: 1035 AAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAF---DELILLKTGGRIIYCGP 1085
+ + + + + G IV + H D+ LLK GG+++ G
Sbjct: 168 QQSALDKILSALSQQGLAIVMSSH----DLNHTLRHAHRAWLLK-GGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 9e-15
Identities = 47/264 (17%), Positives = 79/264 (29%), Gaps = 74/264 (28%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP- 244
L +SG ++ G + L+GP G GKST L ++G + G + + G LE +
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG---KGSIQFAGQPLEAWSATK 70
Query: 245 --KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
AY+SQ V + + +
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYL---------------TL---------HQHDKTRTEL 106
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRL--------TTG 354
L LD +SGG+ +R+ T
Sbjct: 107 LNDV---------------AGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITP 146
Query: 355 EMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL---- 410
+ + L +DE N LD + + + L ++S DL
Sbjct: 147 QANPAG-QLLLLDEPMNSLDVAQQSALDKILSALSQ-QGLAIVMSS-------HDLNHTL 197
Query: 411 --FDDIILMAEGKIVYHGPQDHVL 432
L+ GK++ G ++ VL
Sbjct: 198 RHAHRAWLLKGGKMLASGRREEVL 221
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 8e-20
Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 42/254 (16%)
Query: 817 YGEPVKENSRSTPMTNKE-------SYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGF 869
YG P + P + +E + L F + F+ D + R F
Sbjct: 295 YGVPSVYGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAF 354
Query: 870 ADRKLR------LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIK 921
+ L+ +L G + +MG +G GKTTL+ +LAG + G ++
Sbjct: 355 SYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLN 414
Query: 922 ISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLE 981
+S K Q+ + G TV + +F ++ + + +F +V++
Sbjct: 415 VS--MKPQKIAPKFPG------------TVRQ--LFFK--KIRGQFLNP---QFQTDVVK 453
Query: 982 TIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMR 1041
+ +D I D V LS + +R+ I + L I +DEP+ LD+ I +
Sbjct: 454 PLRIDDIIDQE-----VQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSK 508
Query: 1042 AVKNIV-NTGRTIV 1054
++ + + +T
Sbjct: 509 VIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 3e-14
Identities = 32/189 (16%), Positives = 70/189 (37%), Gaps = 21/189 (11%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIK---ISGYPKVQETFA 933
+ RPG + L+G +G GK+T + +LAG + G + + I Y + E
Sbjct: 95 HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQN 154
Query: 934 RVSGYCEQTDIHSPNI--------TVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 985
+ E ++ V L + E V ++ ++L
Sbjct: 155 YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR---MEKSPEDVKRYIKILQL 211
Query: 986 DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045
+ + + LS + +R I + V + DEP++ LD + + +++
Sbjct: 212 ENVLKR-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS 266
Query: 1046 IVNTGRTIV 1054
++ + ++
Sbjct: 267 LLAPTKYVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-11
Identities = 44/255 (17%), Positives = 76/255 (29%), Gaps = 76/255 (29%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG---YKLEEFV 242
+LN G + +++G G GK+T +K L+G L P G+ K
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQDIPKLNVSMK----- 418
Query: 243 PPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
P+ A TVR+ R + + +
Sbjct: 419 -PQKIAPKFP-------GTVRQLFFKKIR---------GQFLNPQFQTD----------- 450
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK 362
++K L +D D V + +SGG+ +R+ + P
Sbjct: 451 ------------------VVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALGIPAD 487
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPETFDLFDDIILM 417
+DE + LDS I++ + TA I + L D +I+
Sbjct: 488 IYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMAT------YLADKVIVF 541
Query: 418 AEGKIVY---HGPQD 429
P+
Sbjct: 542 EGIPSKNAHARAPES 556
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 7e-11
Identities = 48/257 (18%), Positives = 80/257 (31%), Gaps = 71/257 (27%)
Query: 189 HVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL-KVTGEVSYN------------G 235
H +PG++ L+G G GKST LK L+G P+L + +
Sbjct: 95 HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQN 154
Query: 236 YKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIV 295
Y + + Q +I ++ V + + E+ + E
Sbjct: 155 YFTKMLEDDIKAIIKPQYVDNIP-RAIKGPV-------------QKVGELLKLRME---- 196
Query: 296 PDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI---SGGQKKRLT 352
K +KIL L+ N ++R I SGG+ +R
Sbjct: 197 -----------------KSPEDVKRYIKILQLE--------NVLKRDIEKLSGGELQRFA 231
Query: 353 TGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPET 407
G V DE ++ LD I+ L+ + S+L
Sbjct: 232 IGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDLSVLD----- 285
Query: 408 FDLFDDIILMAEGKIVY 424
L D + ++ VY
Sbjct: 286 -YLSDFVCIIYGVPSVY 301
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 3e-19
Identities = 38/210 (18%), Positives = 76/210 (36%), Gaps = 39/210 (18%)
Query: 886 PGVLTALMGVSGAGKTTLMDVLAG-RKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDI 944
G ++G +G+GKTTL+ ++G SG I I+G V++ + +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSG----NIFINGME-VRKIRNYIRYSTNLPEA 83
Query: 945 HSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPG------V 998
+ +TV + V L+ + E+L+ + + +
Sbjct: 84 YEIGVTVNDIVYLYEELK-------GLDRDLFLEMLK----------ALKLGEEILRRKL 126
Query: 999 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIH 1058
LS Q + ++ L + P I+ +DEP +DA ++ R +K G+ + H
Sbjct: 127 YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEGILVTH 183
Query: 1059 QPSIDIFEAF---DELILLKTGGRIIYCGP 1085
++ + G R+
Sbjct: 184 ----ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 40/251 (15%), Positives = 79/251 (31%), Gaps = 59/251 (23%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
+ L +++ + G ++LGP G GK+T L+A+SG L P +G + NG
Sbjct: 11 LSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPY---SGNIFINGM 65
Query: 237 KLEEFVPPKTSAYISQNDLHIA-EMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIV 295
++ + + Y + +TV + V +G+ R+
Sbjct: 66 EVRK-IRNYIR-YSTNLPEAYEIGVTVNDIVYLYEELKGL-DRDL--------------- 107
Query: 296 PDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR--RGISGGQKKRLTT 353
+LK L L R +S GQ + T
Sbjct: 108 ----------------FLE------MLKALKLG------EEILRRKLYKLSAGQSVLVRT 139
Query: 354 GEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413
+ + + +DE +D++ + I I++ L++ +
Sbjct: 140 SLALASQPEIVGLDEPFENVDAARRHVISRYIKEY-GKE--GILVTHEL--DMLNLYKEY 194
Query: 414 IILMAEGKIVY 424
G +
Sbjct: 195 KAYFLVGNRLQ 205
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 3e-17
Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 35/254 (13%)
Query: 817 YGEPVKENSRSTPMTNKESYKG--RMVLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKL 874
YGE S + + LP E + + ++K+ + ++ K+
Sbjct: 211 YGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKM 270
Query: 875 RL-----------LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKIS 923
+ L G + G + ++G +G GKTT +L G T+ EG +
Sbjct: 271 KWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPE 328
Query: 924 GYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI 983
++ Y Q + + TV++ +L A + T + F EV + +
Sbjct: 329 K---------QILSYKPQRIFPNYDGTVQQ------YLENASKDALSTSSWFFEEVTKRL 373
Query: 984 ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
L + +S V N LS + ++L IA L + +D+P++ LD IV +A+
Sbjct: 374 NLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAI 428
Query: 1044 KNIVNTGRTIVCTI 1057
K + + + I
Sbjct: 429 KRVTRERKAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-12
Identities = 51/287 (17%), Positives = 95/287 (33%), Gaps = 80/287 (27%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
L +G K G + +LGP G GK+TF + L G + G V+ L
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL------- 332
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
+Y Q + TV++ ++ + + + S E
Sbjct: 333 --SYKPQRIFPNYDGTVQQYLE---------NASKDALSTSSWFFEE------------- 368
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
+ K L L ++ V + +SGG+ ++L +
Sbjct: 369 ---------------VTKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEADLYV 408
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLF------DDIILMAE 419
+D+ ++ LD Y + I+++ + I DL D II+ +
Sbjct: 409 LDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII-------DHDLSIHDYIADRIIVF-K 460
Query: 420 GKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQE--VLSRKDQAQF 464
G+ G + + G+++FL+E V R+D
Sbjct: 461 GEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 35/189 (18%), Positives = 72/189 (38%), Gaps = 32/189 (16%)
Query: 884 LRPGVLTALMGVSGAGKTTLMDVLAGR------KTSGYVEGEIKISGYP--KVQETFARV 935
+ + ++G +G GKTT++ +LAG + V + + + ++ F +
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81
Query: 936 SGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGI 995
++ ++ E SK VNE+L I+ KD + +
Sbjct: 82 -----YSNELKIVHKIQYV-----------EYASKFLKGTVNEILTKIDERGKKDEVKEL 125
Query: 996 PGVNG--------LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047
+ LS +RL +A L+ + D+P++ LD R + +A++ ++
Sbjct: 126 LNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL 185
Query: 1048 NTGRTIVCT 1056
IV
Sbjct: 186 KNKYVIVVD 194
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 1e-09
Identities = 45/291 (15%), Positives = 94/291 (32%), Gaps = 75/291 (25%)
Query: 183 KINILNHVS-GILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF 241
K+N K + +LG G GK+T LK L+G + P+ G+ + K E
Sbjct: 10 KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNF---GDPNSKVGKDEVL 66
Query: 242 VPPKTSAYISQNDLHIAEMTVRE--TVDFSARCQGVGSREETMMEVSRREKEAGIVPDPD 299
+++ +E + + + + E + E
Sbjct: 67 ------KRFRGKEIY---NYFKELYSNELKIVHK-IQYVEYASKFLKGTVNEI------- 109
Query: 300 IDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI---SGGQKKRLTTGEM 356
+ + + D + ++L + N + SGG +RL +
Sbjct: 110 ---------LTKIDERGKKDEVKELLNMT--------NLWNKDANILSGGGLQRL----L 148
Query: 357 I----VGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPET 407
+ + D+ ++ LD + I++L+ + ++ +L
Sbjct: 149 VAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVVDHDLIVLD----- 201
Query: 408 FDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSR 458
L D I ++ G+ +G A R G+++FL+ L
Sbjct: 202 -YLTDLIHII-YGESSVYGRVSKSYA----------ARVGINNFLKGYLPA 240
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 4e-17
Identities = 58/251 (23%), Positives = 98/251 (39%), Gaps = 39/251 (15%)
Query: 817 YGEPVKENSRSTPMTNKE-------SYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGF 869
YGEP S P + Y + F P + F V+ E
Sbjct: 232 YGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYP 291
Query: 870 ADRKL---RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISG 924
K L G ++ G + ++G +G GKTT + +LAG T G +E ++ ++
Sbjct: 292 RLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA- 350
Query: 925 YPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 984
Y Q TV E + S A ++NS + E+L+ +
Sbjct: 351 -------------YKPQYIKADYEGTVYE--LLSK--IDASKLNSN---FYKTELLKPLG 390
Query: 985 LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
+ + D V N LS + +R+ IA L+ + I +DEP+ LD V RA++
Sbjct: 391 IIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIR 445
Query: 1045 NIV-NTGRTIV 1054
+++ +T +
Sbjct: 446 HLMEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 1e-13
Identities = 52/286 (18%), Positives = 102/286 (35%), Gaps = 80/286 (27%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
L G +K G + ++GP G GK+TF+K L+G +P+ G++ ++ + P
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLTVA--YKPQ- 354
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
YI + E TV E + + +++ +
Sbjct: 355 ---YIKAD----YEGTVYELL-----------SKIDASKLNSNFYKT------------- 383
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
+LK LG+ D V +SGG+ +R+ ++
Sbjct: 384 --------------ELLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLLRDADIYL 424
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPETFDLFDDIILMAEG 420
+DE + LD + I+ L+ + TAL+ ++ + D +++ EG
Sbjct: 425 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID------YVSDRLMVF-EG 477
Query: 421 KIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQE--VLSRKDQAQF 464
+ +G + R+G++ FL + R+D
Sbjct: 478 EPGKYGRALPPM----------GMREGMNRFLASIGITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 4e-12
Identities = 34/185 (18%), Positives = 72/185 (38%), Gaps = 28/185 (15%)
Query: 883 SLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQT 942
++ G++ ++G +G GK+T + +LAG+ G V
Sbjct: 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDG----------VIRAFRGN 92
Query: 943 DIHSPNITVEESVIFSAWLRLAP-----EINSKTKAEFVNEVLETIELDAIKDSLVGIPG 997
++ + ++ I ++ K V E+L+ + + +V
Sbjct: 93 ELQNYFEKLKNGEIR-----PVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALE 147
Query: 998 VNG--------LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT 1049
+ LS + +R+ IA L+ N + F DEP++ LD R RA++ +
Sbjct: 148 LENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE 207
Query: 1050 GRTIV 1054
G++++
Sbjct: 208 GKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 9e-08
Identities = 48/258 (18%), Positives = 85/258 (32%), Gaps = 80/258 (31%)
Query: 189 HVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSL---KVTGEVSYNGYKLEEFVPPK 245
+ ++K G + ++GP G GKST +K L+G L P+L + + ++ E
Sbjct: 39 YRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL---- 94
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVP-DPDIDTYM 304
+ E V +D
Sbjct: 95 -----------------------------------QNYFEKLKNGEIRPVVKPQYVDLIP 119
Query: 305 KAI------SVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI---SGGQKKRLTTGE 355
KA+ +K T + + ++K L L+ N + R I SGG+ +R+
Sbjct: 120 KAVKGKVIELLKKADETGKLEEVVKALELE--------NVLEREIQHLSGGELQRV---- 167
Query: 356 MI----VGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPE 406
I + F DE ++ LD I++L + L+ ++L
Sbjct: 168 AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLD---- 222
Query: 407 TFDLFDDIILMAEGKIVY 424
L D I ++ VY
Sbjct: 223 --YLSDIIHVVYGEPGVY 238
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 5e-17
Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 39/251 (15%)
Query: 817 YGEPVKENSRSTPMTNKE-------SYKGRMVLPFEPLTVAFQDLKYYVDTPLEMRERGF 869
YGEP S P + Y + F P + F L VD E
Sbjct: 302 YGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYP 361
Query: 870 ADRK---LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISG 924
K L G +R G + ++G +G GKTT + +LAG T G VE ++ ++
Sbjct: 362 RLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA- 420
Query: 925 YPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 984
Y Q TV E + S + ++NS + E+L+ +
Sbjct: 421 -------------YKPQYIKAEYEGTVYE--LLSK--IDSSKLNSN---FYKTELLKPLG 460
Query: 985 LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
+ + D V LS + +R+ IA L+ + I +DEP+ LD V RA++
Sbjct: 461 IIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIR 515
Query: 1045 NIV-NTGRTIV 1054
+++ +T +
Sbjct: 516 HLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 5e-15
Identities = 56/283 (19%), Positives = 103/283 (36%), Gaps = 80/283 (28%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
L G ++ G + ++GP G GK+TF+K L+G +P+ G+V ++ + P
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDLTVA--YKPQ- 424
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
YI E TV E + + + + + + E
Sbjct: 425 ---YIKAEY----EGTVYEL---------LSKIDSSKLNSNFYKTE-------------- 454
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
+LK LG+ D V + +SGG+ +R+ ++
Sbjct: 455 ---------------LLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYL 494
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPETFDLFDDIILMAEG 420
+DE + LD + I+ L+ + TAL+ ++ + D +I+ EG
Sbjct: 495 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID------YVSDRLIVF-EG 547
Query: 421 KIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQE--VLSRKDQ 461
+ HG L R+G++ FL + R+D
Sbjct: 548 EPGRHG---RALPPM-------GMREGMNRFLASVGITFRRDP 580
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 7e-14
Identities = 42/223 (18%), Positives = 88/223 (39%), Gaps = 31/223 (13%)
Query: 843 PFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTT 902
PF +++ +L +D R + L ++ G++ ++G +G GKTT
Sbjct: 80 PFNAISI--VNLPEQLDEDCVHR---YGVNAFVL--YRLPIVKDGMVVGIVGPNGTGKTT 132
Query: 903 LMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLR 962
+ +LAG+ E S ++ ++ + ++ I
Sbjct: 133 AVKILAGQLIPNL--CEDNDSWDNVIR--------AFRGNELQNYFERLKNGEIRPV--- 179
Query: 963 LAP---EINSKTKAEFVNEVLETIELDAIKDSLVGIPG--------VNGLSTEQRKRLTI 1011
+ P ++ K V E+L+ ++ + +V ++ LS + +R+ I
Sbjct: 180 VKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAI 239
Query: 1012 AVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIV 1054
A L+ F DEP++ LD R V R ++ + N G+ ++
Sbjct: 240 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 5e-10
Identities = 47/251 (18%), Positives = 91/251 (36%), Gaps = 60/251 (23%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+ + I+K G + ++GP G GK+T +K L+G L P+L E + + + +
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL---CEDNDSW---DNVI--- 156
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVP-DPDIDTYM 304
N+L + + E V +D
Sbjct: 157 --RAFRGNELQNYFERL-------------------------KNGEIRPVVKPQYVDLLP 189
Query: 305 KAIS------VKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIV 358
KA+ +K V + + ++K L L+ D + +SGG+ +R+ ++
Sbjct: 190 KAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAALL 244
Query: 359 GPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPETFDLFDD 413
F DE ++ LD ++ I++L + L+ ++L L D
Sbjct: 245 RKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDLAVLD------YLSDV 297
Query: 414 IILMAEGKIVY 424
I ++ VY
Sbjct: 298 IHVVYGEPGVY 308
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 9e-17
Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 38/223 (17%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFAR 934
L +V+ + G + G +G+GK+TL+ ++AG TSG ++ G K R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG----DVLYDGERKKGYEIRR 78
Query: 935 VSGYCEQTDIHSP-----NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK 989
G Q P V + V F A + N + V V + +E
Sbjct: 79 NIGIAFQ----YPEDQFFAERVFDEVAF------AVK-NFYPDRDPVPLVKKAMEF---- 123
Query: 990 DSLVGIPGVN-------GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRA 1042
VG+ + LS +++R+ IA +V P I+ +DEP GLD ++R
Sbjct: 124 ---VGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRI 180
Query: 1043 VKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
V+ G+T++ H + D +++L+ G+ ++ G
Sbjct: 181 VEKWKTLGKTVILISHDIE-TVINHVDRVVVLE-KGKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 48/266 (18%), Positives = 97/266 (36%), Gaps = 74/266 (27%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L +VS ++ G L+ G G GKST L+ ++G ++P+ +G+V Y+G + + + +
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRN 79
Query: 247 SAYISQN-DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
Q + V + V F+ + + K+A
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR------DPVPLVKKA------------- 120
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR---GISGGQKKRLTTGEMIVG--- 359
++ +GLD + R +SGG+K+R+ I
Sbjct: 121 ----------------MEFVGLD------FDSFKDRVPFFLSGGEKRRVA----IASVIV 154
Query: 360 --PTKALFMDEITNGLDSSTAYQIIACIQQL-------VHITDSTALISLLQPAPETFDL 410
P L +DE GLD ++ +++ + I+ +
Sbjct: 155 HEP-DILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI---------ETVINH 204
Query: 411 FDDIILMAEGKIVYHGPQDHVLAFFE 436
D ++++ +GK V+ G + L ++
Sbjct: 205 VDRVVVLEKGKKVFDGTRMEFLEKYD 230
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.4 bits (205), Expect = 5e-16
Identities = 86/590 (14%), Positives = 178/590 (30%), Gaps = 142/590 (24%)
Query: 788 LTFLKSSGSSRVMISHEKLAKMQESEDSSYG---EPVKE--NSRSTPMTNKESYKGRM-- 840
L S V +K ++E +Y P+K S + R+
Sbjct: 68 FWTLLSKQEEMV----QKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 841 -VLPFEPLTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAG 899
F V+ R + + + LL LRP + GV G+G
Sbjct: 122 DNQVFAKYNVS--------------RLQPYLKLRQALL-----ELRPAKNVLIDGVLGSG 162
Query: 900 KTTL-MDVLAGRKTSGYVEGEI---KISGYPKVQETFARVSGYCEQTDIHSPNITVEESV 955
KT + +DV K ++ +I + + + Q D PN T
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID---PNWTSRSDH 219
Query: 956 IFSAWLRLAPEINSKTKAEFVNEVLET--IELDAIKDSLVGIPGVNG----LSTEQRKRL 1009
+ LR+ I ++ + ++ E + L ++++ N L T + K++
Sbjct: 220 SSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLSCKILLTTRFKQV 277
Query: 1010 TIAVELVANPSIIFMDEPTTGL-DARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAF 1068
T + A + I +D + L +++++ + V T + + I
Sbjct: 278 TDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE- 335
Query: 1069 DELILLKTG-GRIIY-----CGPLGKHSSQVIEYFEGISGVPK-IRNNYN---------- 1111
++ G C L + E P R ++
Sbjct: 336 ----SIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-----PAEYRKMFDRLSVFPPSAH 386
Query: 1112 -PATWVIEV---TSTSAEAELCVDFAQIFRESVLYENNRE-------LVKQLNTPPPGSK 1160
P ++ + ++ + V+ ++ + S++ + +E + +L
Sbjct: 387 IPTI-LLSLIWFDVIKSDVMVVVN--KLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 1161 DLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLD 1220
LH ++ L Y Y+ I H H + ++
Sbjct: 444 ALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYS--HIGH--------------HLKNIE 485
Query: 1221 NQQ--DLFNIVGSSYLAVVFLG---------INNCSSVIPNVARERTVMYREGFA---GM 1266
+ + LF +V +L FL N S++ + + + Y+
Sbjct: 486 HPERMTLFRMV---FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF--YKPYICDNDPK 540
Query: 1267 YSPWAYAL-------AQVTVEIPYL-LIQ-ALSYVIIGYPMIGYYWSAYK 1307
Y A+ + + Y L++ AL + A+K
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALM-----AEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.0 bits (191), Expect = 2e-14
Identities = 97/620 (15%), Positives = 194/620 (31%), Gaps = 155/620 (25%)
Query: 73 FDVN--SHGN---LVDNQGKLV--IDVTKLGALERHVFIEKLIKHI--EHDNLQ----LL 119
F+ + L + V D + + + + ++ I HI D + L
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 120 WKIRKR----VDK-VGIKLPTIEVRYKNLCVEAKCEVVHGKPLPT---------LWNSFK 165
W + + V K V L + YK L + + T L+N
Sbjct: 69 WTLLSKQEEMVQKFVEEVL---RINYKFL-MSPIKTEQRQPSMMTRMYIEQRDRLYND-- 122
Query: 166 GMISVLPKLSGYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKST------------- 212
V K + + L+ + + + L+P + L+ G G GK+
Sbjct: 123 --NQVFAKYNVSR-LQPYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 213 ------F----------------LKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYI 250
F L+ L +DP+ + S N + + +
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 251 SQNDLHIAEMTVR-----ETVD-FSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYM 304
+ + + + F+ C+ + ++ R K+ V D
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCK-------IL--LTTRFKQ---VTDFLSAATT 286
Query: 305 KAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMI-VGPTK- 362
IS+ TL D + +L D + + R E++ P +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLK--YLDCRPQD-LPR-------------EVLTTNPRRL 330
Query: 363 ALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDI-ILMAEGK 421
++ + I +GL + ++ + C +L I +S+ +++L+PA E +FD + +
Sbjct: 331 SIIAESIRDGLATWDNWKHVNC-DKLTTIIESS--LNVLEPA-EYRKMFDRLSVFPPSAH 386
Query: 422 IVYHGPQDHVLAFF-EDCGFRCPERKGVSDFLQEVLSRKDQAQFWLHTELPYSYFSVDM- 479
I P +L+ D + + L + + E S S+ +
Sbjct: 387 I----PTI-LLSLIWFDVIKSDVM-----VVVNK-LHKYSLVEKQPK-ESTISIPSIYLE 434
Query: 480 FSKKFKESP-LVKKLDEELLVP--YDKSKSPKNAISFSVYSLSRWELFKACMSRELLLMR 536
K + L + + + +P +D + YS L + L R
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 537 RNSFVYV-FKTTQLIMLATMAMTVFLRTRMEIDVFHGNYYMGSLYFSLVVL------LVD 589
V++ F+ FL ++ D N GS+ +L L + D
Sbjct: 495 M---VFLDFR--------------FLEQKIRHDSTAWN-ASGSILNTLQQLKFYKPYICD 536
Query: 590 GMPELSMTIQRLEVFYKQQE 609
P+ + + F + E
Sbjct: 537 NDPKYERLVNAILDFLPKIE 556
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 1e-06
Identities = 65/396 (16%), Positives = 126/396 (31%), Gaps = 118/396 (29%)
Query: 1066 EAFDELILLK---TGGRIIYCGPLGKHSSQVIEYFEGISGVPKIRNNYNPATWVIEVTST 1122
E D +I+ K +G ++ L K V ++ E + +R NY +++ T
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV-----LRINYK---FLMSPIKT 100
Query: 1123 SAEAELCVDFAQIFRESVLYENNRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWK 1182
Q + +Y R+ + N +K + +R + + + + L +
Sbjct: 101 EQR--------QPSMMTRMYIEQRD--RLYNDNQVFAK--YNVSRL-QPYL-KLRQALLE 146
Query: 1183 LHLSYWRSPSYNLMRIMHTATASLLFGVLFWDHGQKLDNQQDLFNIVGSSYLAVVFLGIN 1242
L P+ N+ L+ GVL G G +++A+
Sbjct: 147 L------RPAKNV----------LIDGVL----G------------SGKTWVAL------ 168
Query: 1243 NCSSVIPNVARERTVMYREGFAGMYSPWAYALAQVTV---EIPYLLI---QALSYVIIG- 1295
+V V + F ++ W + + P ++ Q L Y I
Sbjct: 169 -------DVCLSYKVQCKMDF-KIF--W------LNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 1296 YPMIGYYWSAYKLFWNFYGMFCTMMFYNYLGMLLVSLT-PNSMIASILSSVCYTLFNLFA 1354
+ + S KL + L LL S N ++ +L +V +
Sbjct: 213 WTSRSDHSSNIKLRIHS--------IQAELRRLLKSKPYENCLL--VLLNVQNA--KAWN 260
Query: 1355 GFLIPGPKIPKWWIWMYYMMPTSW-----ALNAMVTSQYGDIDKEMIVFGETKKLSSFIQ 1409
F + KI ++ T + L+A T+ +D + + S ++
Sbjct: 261 AFNL-SCKI---------LLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLK 309
Query: 1410 DYFGFHHDRLPITAAVLIIYPLVLAFLFAFCIERLN 1445
Y LP L P L+ + + L
Sbjct: 310 -YLDCRPQDLPREV--LTTNPRRLSIIAESIRDGLA 342
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 4e-05
Identities = 86/650 (13%), Positives = 173/650 (26%), Gaps = 221/650 (34%)
Query: 644 VIGYSPEVWRFFRQFILLFASHFTSISMF---------RFMASVFQTEFAAMTAGSVVIL 694
+I V R F L + + F +F+ S +TE + + +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM--MTRM 111
Query: 695 FVF----------LFGGFVISRPSMPAWLKWGF-------WISPVTYGEIGL--SVNEFL 735
++ +F + +SR L+ + + G +G + +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGSGKTW---V 166
Query: 736 APRWQKMLPTNTTIGQEILESRGL--NFDGFIFWISLGALFGIALLLNIGFTLALTFLKS 793
A ++ S + D IFW++L +L
Sbjct: 167 A--------------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL------------- 199
Query: 794 SGSSRVMISHEKLAKMQESEDSSYGEPVKENSRSTPMTNKESYKGRMVLPFEPLTVAFQD 853
E L K+ D ++ ++S + + S +
Sbjct: 200 ----------EMLQKLLYQIDPNWTSRS-DHSSNIKL-RIHSIQAE-------------- 233
Query: 854 LKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTA-------LMGVSGAGKTT---- 902
L+ ++ + + L +L +V A L+ TT
Sbjct: 234 LRRL------LKSKPYE-NCLLVLLNVQ---NAKAWNAFNLSCKILL-------TTRFKQ 276
Query: 903 LMDVLAGRKTSGYVEGEIKISGY--PKVQETFARVSGYCEQTDIHSPNITVEESV----- 955
+ D L+ T+ ++ + +V+ + C D+ P E +
Sbjct: 277 VTDFLSAATTT-HISLDHHSMTLTPDEVKSLLLKYLD-CRPQDL--P----REVLTTNPR 328
Query: 956 ---IFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLS-TEQRKRLTI 1011
I + +R K +++ IE +N L E RK
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-----------LNVLEPAEYRKMF-- 375
Query: 1012 AVELVANPSIIFMDE---PTTGLDARAAAIVMRAVKNIVNT----------GRTIVCTIH 1058
L +F PT L ++ V +VN + +I
Sbjct: 376 -DRLS-----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 1059 QPSIDIFEAFDELILLKTGGRII--------YCGP--------------LGKHSSQVIEY 1096
+++ + L I+ + +G H IE+
Sbjct: 430 SIYLELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN-IEH 486
Query: 1097 FEGISGVPKIRNNYNPATWV---IEVTSTSAEA-----ELCVDF----AQIFRESVLYEN 1144
E ++ + ++ ++ I ST+ A I YE
Sbjct: 487 PERMTLFRMVFLDFR---FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE- 542
Query: 1145 NRELVKQLNTPPPGSKDLHFPTRFSRNFWGQFKSCLWKLHLSYWRSPSYN 1194
LV + L F + N + L ++ L +
Sbjct: 543 --RLVNAI---------LDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 53/226 (23%), Positives = 94/226 (41%), Gaps = 39/226 (17%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYP------KV 928
L + +++ G +TA++G +G GK+TL G + +SG I P +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG----RILFDNKPIDYSRKGI 79
Query: 929 QETFARVSGYCEQTDIHSPN-----ITVEESVIFSAWLRLAPE---INSKTKAEFVNEVL 980
+ + G Q P+ +V + V F + + V+ L
Sbjct: 80 MKLRESI-GIVFQ----DPDNQLFSASVYQDVSF------GAVNMKLPEDEIRKRVDNAL 128
Query: 981 ETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM 1040
+ ++ +KD + LS Q+KR+ IA LV P ++ +DEPT GLD + +M
Sbjct: 129 KRTGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIM 183
Query: 1041 RAVKNI-VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
+ + + G TI+ H + D + ++K GR+I G
Sbjct: 184 KLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMK-EGRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 3e-14
Identities = 61/299 (20%), Positives = 109/299 (36%), Gaps = 66/299 (22%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT 246
L ++ +K G +T +LG G GKST + +G L PS +G + ++ ++ K
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKG 78
Query: 247 SAYISQN--------DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDP 298
+ ++ D + +V + V F A + +E + +R A
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL-PEDE----IRKRVDNA------ 127
Query: 299 DIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIV 358
LK G++ D +S GQKKR+ ++V
Sbjct: 128 -----------------------LKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLV 159
Query: 359 GPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALIS---LLQPAPETFDLFDDII 415
K L +DE T GLD +I+ + ++ T +I+ + D++
Sbjct: 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI----DIVPLYCDNVF 215
Query: 416 LMAEGKIVYHGPQDHVLA---FFEDCGFRCPERKGVSDFLQE----VLSRKDQAQFWLH 467
+M EG+++ G V A R P + + L+E V D+ H
Sbjct: 216 VMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKEKDGFVFDELDEGHHHHH 274
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 50/199 (25%), Positives = 94/199 (47%), Gaps = 12/199 (6%)
Query: 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG-YVEGEIKISGYPK 927
+ + L +V +++ G ++MG SG+GK+T+++++ + T G IK +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 928 VQETFAR--VSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 985
+ T R G+ Q P +T E+V + ++ + + + E L+ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 986 -DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
+ + P N LS Q++R+ IA L NP II D+PT LD++ +M+ +K
Sbjct: 135 EERFANHK---P--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLK 189
Query: 1045 NI-VNTGRTIVCTIHQPSI 1062
+ G+T+V H ++
Sbjct: 190 KLNEEDGKTVVVVTHDINV 208
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 72.1 bits (178), Expect = 4e-14
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 17/198 (8%)
Query: 872 RKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG-YVEGEIKISGYPKV 928
R +L ++ S++ G +++G SG+GK+TL+ +L T G ++ +
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEK 74
Query: 929 QETFAR--VSGYCEQTDIHS--PNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 984
+ + R G+ Q H P +T E+VI P+ +K + E +L +
Sbjct: 75 ELSLLRNRKLGFVFQF--HYLIPELTALENVIVPMLKMGKPKKEAKERGE---YLLSELG 129
Query: 985 LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
L D L P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 130 L---GDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184
Query: 1045 NIVNTGRTIVCTIHQPSI 1062
I G +IV H+ +
Sbjct: 185 KINEGGTSIVMVTHEREL 202
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 46/225 (20%), Positives = 77/225 (34%), Gaps = 65/225 (28%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD-PSLKVTGEVSYNG 235
+ E L +S +K G ++G G GKST L L G LD P+ G+V G
Sbjct: 14 IRGYEI----LKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPT---EGKVFLEG 65
Query: 236 YKLEEFVPPKTSA-------YISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRR 288
+++ + S ++ Q I E+T E V G +E +
Sbjct: 66 KEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKE-------AK 118
Query: 289 EKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG-----I 343
E + + L LGL + +
Sbjct: 119 E---------------RGEYL------------LSELGL----------GDKLSRKPYEL 141
Query: 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQL 388
SGG+++R+ + LF DE T LDS+ +++ ++
Sbjct: 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI 186
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 5e-14
Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 43/206 (20%)
Query: 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYV--EGEIKISGYP--K 927
+ L V+ S+ G +T ++G +G+GK+TL++V+ G + G V E + I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK-DITNKEPAE 78
Query: 928 VQE-----TFARVSGYCEQTDIHS-PNITVEESV-----------IFSAWLRL--APEIN 968
+ TF QT +TV E++ + S + + E
Sbjct: 79 LYHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 129
Query: 969 SKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1028
KA ++LE ++L + D G LS Q K + I L+ NP +I MDEP
Sbjct: 130 MVEKAF---KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPI 181
Query: 1029 TGLDARAAAIVMRAVKNIVNTGRTIV 1054
G+ A + V + G T +
Sbjct: 182 AGVAPGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 51/211 (24%), Positives = 76/211 (36%), Gaps = 43/211 (20%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK- 245
L+ VS + G +TL++GP G GKST + ++G L G V + + P +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 246 TSAYIS---QNDLHI-AEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDID 301
I Q EMTV E + C G + ++E
Sbjct: 80 YHYGIVRTFQT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE--------- 129
Query: 302 TYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGE----MI 357
KA IL+ L L D G +SGGQ K + E ++
Sbjct: 130 MVEKAFK------------ILEFLKLSHLYDRKAGE-----LSGGQMKLV---EIGRALM 169
Query: 358 VGPTKALFMDEITNGLDSSTAYQIIACIQQL 388
P K + MDE G+ A+ I + +L
Sbjct: 170 TNP-KMIVMDEPIAGVAPGLAHDIFNHVLEL 199
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 8e-10
Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 44/168 (26%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY-VEGEIKISGYPKVQETFARVSG 937
L+ + G +G GK+TLM +A + G+ + E +
Sbjct: 453 KTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT--------------V 498
Query: 938 YCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPG 997
Y E + SV+ +FV E + +AIKD L+
Sbjct: 499 YVEH---DIDGTHSDTSVL-----------------DFVFESGVGTK-EAIKDKLIEFGF 537
Query: 998 --------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 1037
++ LS + +L +A ++ N I+ +DEPT LD A
Sbjct: 538 TDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 1e-07
Identities = 44/303 (14%), Positives = 91/303 (30%), Gaps = 72/303 (23%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS--------------------- 224
+ ++ ++GP G GKST + L+G L P+
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFA 747
Query: 225 -LKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEM------TVRETVDFSARCQGVGS 277
++ + + + Y F + + + + I E + + R G+ S
Sbjct: 748 HIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHS 807
Query: 278 REETMMEVSRREKEAGIVPDPDIDTYMKAISVK--------------------------- 310
R + +
Sbjct: 808 RRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEAL 867
Query: 311 --GVKRTLQTDYILKIL-GLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMD 367
G R L I + L + + + + +R G+SGGQK +L + +D
Sbjct: 868 ASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIR-GLSGGQKVKLVLAAGTWQRPHLIVLD 926
Query: 368 EITNGLDSSTAYQIIACIQQ----LVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423
E TN LD + + +++ ++ IT S +L +++ + +G++
Sbjct: 927 EPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTK---------NLTEEVWAVKDGRMT 977
Query: 424 YHG 426
G
Sbjct: 978 PSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 3e-06
Identities = 36/195 (18%), Positives = 65/195 (33%), Gaps = 64/195 (32%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+LN LK R + GP GCGKST ++A++ +++ F +
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG----------------QVDGFPTQE 493
Query: 246 --TSAYISQN-DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
+ Y+ + D ++ +V + V + +E + +
Sbjct: 494 ECRTVYVEHDIDGTHSDTSVLDFV-----FESGVGTKEAIKD------------------ 530
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTK 362
L G D M+ + +SGG K +L ++
Sbjct: 531 ------------------KLIEFGFT---DEMIAMPI-SALSGGWKMKLALARAVLRNAD 568
Query: 363 ALFMDEITNGLDSST 377
L +DE TN LD+
Sbjct: 569 ILLLDEPTNHLDTVN 583
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 5e-04
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045
+ GLS Q+ +L +A P +I +DEPT LD + + +A+K
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 946
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 3e-09
Identities = 54/202 (26%), Positives = 96/202 (47%), Gaps = 44/202 (21%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYV--EGEIKISGYP--KV---- 928
L ++ S++ G + ++G SG+GK+TL ++ Y+ G++ I G+
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF----YIPENGQVLIDGHDLALADPNW 80
Query: 929 ---------QET--FAR-VSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFV 976
Q+ R + + + +P ++VE+ VI++A +LA + +F+
Sbjct: 81 LRRQVGVVLQDNVLLNRSII---DNISLANPGMSVEK-VIYAA--KLA---GA---HDFI 128
Query: 977 NEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036
EL +++VG G LS QR+R+ IA LV NP I+ DE T+ LD +
Sbjct: 129 ------SELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 1037 AIVMRAVKNIVNTGRTIVCTIH 1058
++MR + I GRT++ H
Sbjct: 182 HVIMRNMHKIC-KGRTVIIIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 5e-06
Identities = 57/268 (21%), Positives = 102/268 (38%), Gaps = 77/268 (28%)
Query: 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP 244
IL++++ +K G + ++G G GKST K + P G+V +G+ L
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLAL---- 75
Query: 245 KTSAYISQNDL--HIA---------EMTVRETVDFSARCQGVGSREETMMEVSRREKEAG 293
N L + ++ + + + ++ +V K AG
Sbjct: 76 -----ADPNWLRRQVGVVLQDNVLLNRSIIDNISL-------ANPGMSVEKVIYAAKLAG 123
Query: 294 IVPDPDIDTYMKAISVKGVKRTLQTDYILKI-LGLDVCADTMVGNAMRRGI--SGGQKKR 350
D+I ++ G + T+VG +G SGGQ++R
Sbjct: 124 A-----------------------HDFISELREGYN----TIVGE---QGAGLSGGQRQR 153
Query: 351 LTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAP 405
+ +V K L DE T+ LD + + I+ + ++ T +I S ++ A
Sbjct: 154 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLSTVKNA- 210
Query: 406 ETFDLFDDIILMAEGKIVYHGPQDHVLA 433
D II+M +GKIV G +L+
Sbjct: 211 ------DRIIVMEKGKIVEQGKHKELLS 232
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 50/224 (22%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFAR 934
L +T S+ G L A++G G GK++L+ L K G+V I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV----AIKG---------S 67
Query: 935 VSGYCEQTDIHSP---NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDS 991
V+ Y Q N ++ E+++F + + + V++ L +
Sbjct: 68 VA-YVPQQ----AWIQNDSLRENILF----------GCQLEEPYYRSVIQACALLPDLEI 112
Query: 992 L-------VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
L +G GVN LS Q++R+++A + +N I D+P + +DA + V
Sbjct: 113 LPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV- 170
Query: 1045 NIVNTG----RTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
I G +T + H + D +I++ GG+I G
Sbjct: 171 -IGPKGMLKNKTRILVTHS--MSYLPQVDVIIVMS-GGKISEMG 210
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 63/269 (23%), Positives = 98/269 (36%), Gaps = 82/269 (30%)
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE 240
+ LN ++ + G + ++G GCGKS+ L AL +D KV G V+ G
Sbjct: 15 RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG----- 66
Query: 241 FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI 300
+ AY+ Q I ++RE + F G + +E
Sbjct: 67 -----SVAYVPQQAW-IQNDSLRENILF-------GCQ----LEEPY------------- 96
Query: 301 DTYMKAISVKGVKRTLQTDYILKIL-GLDVCADTMVGNAMRRGI--SGGQKKRLTTGEMI 357
Y I L D L+IL D T +G +G+ SGGQK+R
Sbjct: 97 --YRSVIQACA----LLPD--LEILPSGD---RTEIGE---KGVNLSGGQKQR------- 135
Query: 358 VGPTKAL-------FMDEITNGLDSSTAYQII-ACIQQLVHITDSTAL-----ISLLQPA 404
V +A+ D+ + +D+ I I + + T + +S L
Sbjct: 136 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQV 195
Query: 405 PETFDLFDDIILMAEGKIVYHGPQDHVLA 433
D II+M+ GKI G +LA
Sbjct: 196 -------DVIIVMSGGKISEMGSYQELLA 217
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 8e-09
Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 45/221 (20%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFAR 934
L D+ + G L A+ G +GAGKT+L+ ++ G + G+IK SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE----GKIKHSG---------R 100
Query: 935 VSGYCEQTDIHSP---NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET------IEL 985
+S +C Q T++E++I ++ V++ I
Sbjct: 101 IS-FCSQN----SWIMPGTIKENIIGVSY-----------DEYRYRSVIKACQLEEDISK 144
Query: 986 DAIKD-SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
A KD ++G G+ LS QR R+++A + + + +D P LD + +
Sbjct: 145 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 1045 NIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
+ +T + + ++ + D++++L G + G
Sbjct: 204 CKLMANKTRILVTSK--MEHLKKADKILILH-EGSSYFYGT 241
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 48/264 (18%), Positives = 95/264 (35%), Gaps = 85/264 (32%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L ++ ++ G++ + G G GK++ L + G L+ G++ ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 99
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
++ SQN I T++E + +G + R Y
Sbjct: 100 RISFCSQNSW-IMPGTIKENI--------IGVS----YDEYR---------------YRS 131
Query: 306 AISVKGVKRTLQTDYILKIL-GLDVCADTMVGNAMRRGI--SGGQKKRLTTGEMIVGPTK 362
I L+ D + D + ++G GI SGGQ+ R + +
Sbjct: 132 VIKACQ----LEED--ISKFAEKD---NIVLGE---GGITLSGGQRAR-------ISLAR 172
Query: 363 AL-------FMDEITNGLDSSTAYQIIA-CIQQLVHITDSTAL-----ISLLQPAPETFD 409
A+ +D LD T +I C+ +L+ + T + + L+ A
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA--NKTRILVTSKMEHLKKA----- 225
Query: 410 LFDDIILMAEGKIVYHGPQDHVLA 433
D I+++ EG ++G +
Sbjct: 226 --DKILILHEGSSYFYGTFSELQN 247
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 45/220 (20%), Positives = 88/220 (40%), Gaps = 44/220 (20%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFAR 934
L D+ + G L A+ G +GAGKT+L+ ++ G + G+IK SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE----GKIKHSG---------R 70
Query: 935 VSGYCEQTDIHSP---NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDS 991
+S +C Q T++E++IF V++ +L+
Sbjct: 71 IS-FCSQF----SWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLEEDISK 115
Query: 992 L-------VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
+G G+ LS QR R+++A + + + +D P LD + +
Sbjct: 116 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174
Query: 1045 NIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
+ +T + + ++ + D++++L G + G
Sbjct: 175 CKLMANKTRILVTSK--MEHLKKADKILILH-EGSSYFYG 211
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 49/269 (18%), Positives = 96/269 (35%), Gaps = 84/269 (31%)
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE 240
E +L ++ ++ G++ + G G GK++ L + G L+ G++ ++G
Sbjct: 18 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG----- 69
Query: 241 FVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI 300
++ SQ I T++E + F G + R
Sbjct: 70 -----RISFCSQFSW-IMPGTIKENIIF-------GVS----YDEYR------------- 99
Query: 301 DTYMKAISVKGVKRTLQTDYILKIL-GLDVCADTMVGNAMRRGI--SGGQKKRLTTGEMI 357
Y I L+ D + D + ++G GI SGGQ+ R
Sbjct: 100 --YRSVIKACQ----LEED--ISKFAEKD---NIVLGE---GGITLSGGQRAR------- 138
Query: 358 VGPTKAL-------FMDEITNGLDSSTAYQII-ACIQQLVHITDSTAL-----ISLLQPA 404
+ +A+ +D LD T +I +C+ +L+ + T + + L+ A
Sbjct: 139 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA--NKTRILVTSKMEHLKKA 196
Query: 405 PETFDLFDDIILMAEGKIVYHGPQDHVLA 433
D I+++ EG ++G +
Sbjct: 197 -------DKILILHEGSSYFYGTFSELQN 218
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 41/225 (18%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIKISGYP--K 927
L DV+ ++ PG AL+G SGAGK+T++ D+ +G I+I G +
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRIDGQDISQ 120
Query: 928 V-QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL- 985
V Q + G Q D N T+ +++ + R+ + E V + +
Sbjct: 121 VTQASLRSHIGVVPQ-DTVLFNDTIADNIRYG---RV-----TAGNDE-VEAAAQAAGIH 170
Query: 986 DAIK------DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIV 1039
DAI + VG G+ LS +++R+ IA ++ P II +DE T+ LD +
Sbjct: 171 DAIMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 1040 MRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
++ + RT + H+ S + A D+++++K G I+ G
Sbjct: 230 QASLAKVC-ANRTTIVVAHRLST-VVNA-DQILVIK-DGCIVERG 270
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 64/261 (24%), Positives = 104/261 (39%), Gaps = 65/261 (24%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
L VS + PG+ L+GP G GKST L+ L D S +G + +G + +
Sbjct: 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQ----- 120
Query: 246 TSAYISQNDL--HIAEMTVRETVDFSARCQ---GVGSREETMMEVSRREKEAGIVPDPDI 300
++Q L HI + ++TV F+ G EV + AGI
Sbjct: 121 ----VTQASLRSHIG-VVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI------ 169
Query: 301 DTYMKAISVKGVKRTLQTDYILKI-LGLDVCADTMVGNAMRRG--ISGGQKKRLTTGEMI 357
D I+ G T VG RG +SGG+K+R+ I
Sbjct: 170 -----------------HDAIMAFPEGYR----TQVG---ERGLKLSGGEKQRVAIARTI 205
Query: 358 VGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPETFDLFD 412
+ + +DE T+ LD+S I A + ++ + T ++ S + A D
Sbjct: 206 LKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTVVNA-------D 256
Query: 413 DIILMAEGKIVYHGPQDHVLA 433
I+++ +G IV G + +L+
Sbjct: 257 QILVIKDGCIVERGRHEALLS 277
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 23/150 (15%)
Query: 891 ALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPKVQETFARVSGYCEQTDIHS 946
L+G +GAGK+ ++++AG + G + G I+ P R G+ Q
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGA-DITPLP----PERRGIGFVPQDYALF 82
Query: 947 PNITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTE 1004
P+++V ++ + LR E + + V E+ E + + + D LS
Sbjct: 83 PHLSVYRNIAYG--LRNVERVERDRR-----VREMAEKLGIAHLLDRKP-----ARLSGG 130
Query: 1005 QRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
+R+R+ +A LV P ++ +DEP + +D +
Sbjct: 131 ERQRVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 43/196 (21%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY--VEGEIKISGYP--KVQETF 932
L D++ +P + A G SG GK+T+ +L R Y GEI I G P +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RF---YQPTAGEITIDGQPIDNISLEN 73
Query: 933 ARVS-GYCEQTDIHSPNITVEESVIFSAWLR------LAP-----EINSKTKA----EFV 976
R G+ Q +S I + +R L ++ FV
Sbjct: 74 WRSQIGFVSQ-----------DSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 977 NEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036
+ ++ VG GV +S QR+RL IA + NP I+ +DE T LD+ +
Sbjct: 123 EN------MPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE 175
Query: 1037 AIVMRAVKNIVNTGRT 1052
++V +A+ +++ GRT
Sbjct: 176 SMVQKALDSLM-KGRT 190
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 7e-06
Identities = 56/253 (22%), Positives = 92/253 (36%), Gaps = 62/253 (24%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP- 244
IL +S +P + GP G GKST L P+ GE++ +G ++
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLEN 73
Query: 245 --KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREE-TMMEVSRREKEAGIVPDPDID 301
++SQ D I T+RE + + G + T ++ + A
Sbjct: 74 WRSQIGFVSQ-DSAIMAGTIRENLTY-------GLEGDYTDEDLWQVLDLAFA------- 118
Query: 302 TYMKAISVKGVKRTLQTDYILKI-LGLDVCADTMVGNAMRRGI--SGGQKKRLTTGEMIV 358
++ + L+ T VG RG+ SGGQ++RL +
Sbjct: 119 ----------------RSFVENMPDQLN----TEVGE---RGVKISGGQRQRLAIARAFL 155
Query: 359 GPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPETFDLFDD 413
K L +DE T LDS + + + L+ T L+ S + A D
Sbjct: 156 RNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLSTIVDA-------DK 206
Query: 414 IILMAEGKIVYHG 426
I + +G+I G
Sbjct: 207 IYFIEKGQITGSG 219
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 5e-08
Identities = 59/213 (27%), Positives = 105/213 (49%), Gaps = 24/213 (11%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY-VEGEIKISGYP--KVQETFA 933
L + + G AL+G +G+GK+T+ +L R Y EG+IKI G K
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVNKYNRNSI 91
Query: 934 RVS-GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKA----EFVNEVLETIELDAI 988
R G Q D N T++ ++++ E+ TK+ +F+ + + +
Sbjct: 92 RSIIGIVPQ-DTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWD---- 146
Query: 989 KDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN 1048
++VG G+ LS +R+R+ IA L+ +P I+ DE T+ LD++ + +AV+++
Sbjct: 147 --TIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK 203
Query: 1049 TGRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081
RT++ H+ S I A + +ILL G+I+
Sbjct: 204 -NRTLIIIAHRLST-ISSA-ESIILLN-KGKIV 232
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 58/277 (20%), Positives = 99/277 (35%), Gaps = 79/277 (28%)
Query: 176 GYKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG 235
Y + L ++ + G L+G G GKST K L D G++ G
Sbjct: 26 SYPK-QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE----GDIKIGG 80
Query: 236 YKLEEFVPPKTSAYISQNDLHIA-----------EMTVRETVDFSARCQGVGSREETMME 284
+ + ++N + T++ + + G + T E
Sbjct: 81 KNVNK---------YNRNSIRSIIGIVPQDTILFNETIKYNILY-------GKLDATDEE 124
Query: 285 VSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKI-LGLDVCADTMVGNAMRRGI 343
V + K A + D+I + D T+VGN +G+
Sbjct: 125 VIKATKSAQL-----------------------YDFIEALPKKWD----TIVGN---KGM 154
Query: 344 --SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI--- 398
SGG+++R+ ++ K + DE T+ LDS T Y ++ L + T +I
Sbjct: 155 KLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAH 212
Query: 399 --SLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLA 433
S + A + IIL+ +GKIV G +L
Sbjct: 213 RLSTISSA-------ESIILLNKGKIVEKGTHKDLLK 242
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 6e-08
Identities = 62/228 (27%), Positives = 96/228 (42%), Gaps = 47/228 (20%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY--VEGEIKISGYPKVQETFAR 934
L + ++ G AL+G SG GK+T + L R Y ++G + I G
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQ-LMQRL---YDPLDGMVSIDGQ--------- 452
Query: 935 VSGYCEQTDIHSPN-------ITV--EESVIFSAWLR--LAPEINSKTKAEFVNEVLETI 983
DI + N I V +E V+F+ + + T E + + ++
Sbjct: 453 --------DIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDE-IEKAVKEA 503
Query: 984 ELDA-IK------DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036
I D+LVG G LS Q++R+ IA LV NP I+ +DE T+ LD +
Sbjct: 504 NAYDFIMKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562
Query: 1037 AIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCG 1084
A+V A+ GRT + H+ S + A D + GG I+ G
Sbjct: 563 AVVQAALDKAR-EGRTTIVIAHRLST-VRNA-DVIAGFD-GGVIVEQG 606
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 4e-07
Identities = 72/369 (19%), Positives = 123/369 (33%), Gaps = 86/369 (23%)
Query: 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP 243
+ IL ++ +K G+ L+G GCGKST ++ + DP G VS +G +
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRT--- 456
Query: 244 PKTSAYISQNDL--HIA---------EMTVRETVDFSARCQGVGSREETMMEVSRREKEA 292
I+ L I T+ E + + G + TM E+ + KEA
Sbjct: 457 ------INVRYLREIIGVVSQEPVLFATTIAENIRY-------GREDVTMDEIEKAVKEA 503
Query: 293 GIVPDPDIDTYMKAISVKGVKRTLQTDYILKI-LGLDVCADTMVGNAMRRGI--SGGQKK 349
D+I+K+ D T+VG RG SGGQK+
Sbjct: 504 NA-----------------------YDFIMKLPHQFD----TLVGE---RGAQLSGGQKQ 533
Query: 350 RLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPA 404
R+ +V K L +DE T+ LD+ + + A + + T ++ S ++ A
Sbjct: 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTIVIAHRLSTVRNA 591
Query: 405 PETFDLFDDIILMAEGKIVYHGPQDHVLAFFEDCGF-----RCPERKGVSDFLQEVLSRK 459
D I G IV G D ++ + G + E K
Sbjct: 592 -------DVIAGFDGGVIVEQGNHDELMR---EKGIYFKLVMTQTAGNEIELGNEACKSK 641
Query: 460 DQAQFWLHTELPYSYFSVDMFSKKFKESPLVKKLDEELLVPYDKSKSPKNAISFSVYSLS 519
D+ + + S + + + P + + + L+
Sbjct: 642 DEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASF-WRILKLN 700
Query: 520 RWELFKACM 528
E +
Sbjct: 701 STEWPYFVV 709
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 28/195 (14%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIKISGYPKVQ 929
L ++ ++ G AL+G SG GK+T++ D +AG + + G ++
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKE-IK 1098
Query: 930 ETFARVSGYCEQTDIHS--P---NITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 984
+ V Q I S P + ++ E++ + R+ A+ N + + I+
Sbjct: 1099 Q--LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEAN-IHQFID 1155
Query: 985 -LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1043
L ++ VG G LS Q++R+ IA LV P I+ +DE T+ LD + +V A+
Sbjct: 1156 SLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL 1214
Query: 1044 KNIVNTGRTIVCTIH 1058
GRT + H
Sbjct: 1215 DK-AREGRTCIVIAH 1228
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 43/197 (21%)
Query: 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP 243
I +L +S +K G+ L+G GCGKST ++ L DP G V +G ++++
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNV 1102
Query: 244 P---KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI 300
+SQ + + ++ E + + G SR + E+ R KEA I
Sbjct: 1103 QWLRAQLGIVSQEP-ILFDCSIAENIAY-----GDNSRVVSYEEIVRAAKEANI------ 1150
Query: 301 DTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG--ISGGQKKRLTTGEMIV 358
+ I +L Y +T VG+ +G +SGGQK+R+ +V
Sbjct: 1151 ---HQFID------SLPDKY-----------NTRVGD---KGTQLSGGQKQRIAIARALV 1187
Query: 359 GPTKALFMDEITNGLDS 375
L +DE T+ LD+
Sbjct: 1188 RQPHILLLDEATSALDT 1204
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 6e-08
Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 41/174 (23%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYPKVQETF 932
+ V+ +R G + L+G SG+GKTT++ ++AG R T G ++ G+ +++ P
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGK-RVTDLP----PQ 85
Query: 933 ARVSGYCEQTDIHS--------PNITVEESVIFSAWLRL----APEINSKTKAEFVNEVL 980
R ++ ++TV ++V F LR E++++ V E+L
Sbjct: 86 KR--------NVGLVFQNYALFQHMTVYDNVSFG--LREKRVPKDEMDAR-----VRELL 130
Query: 981 ETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
+ L++ + + LS Q++R+ +A L P ++ DEP +D +
Sbjct: 131 RFMRLESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 27/125 (21%)
Query: 178 KSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYK 237
K + VS ++ G M LLGP G GK+T L+ ++G P+ G+V G +
Sbjct: 22 KIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKR 78
Query: 238 LEEFVPPKTSAYISQNDLHIA----------EMTVRETVDFSARCQGVGSREETMMEVSR 287
+ + +PP ++ MTV + V F R + V E+
Sbjct: 79 VTD-LPP--------QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKD-----EMDA 124
Query: 288 REKEA 292
R +E
Sbjct: 125 RVREL 129
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 7e-08
Identities = 19/161 (11%), Positives = 50/161 (31%), Gaps = 19/161 (11%)
Query: 938 YCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPG 997
++ + +A ++ + + E + + +
Sbjct: 180 SGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVW 239
Query: 998 VNG------LSTEQRKRLTIAVEL------VANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045
LS +R L +A L S++ +DEPT LD ++ ++
Sbjct: 240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 299
Query: 1046 IVNTGRTIVCTIHQPSIDIFEAFDELILLK-----TGGRII 1081
+ ++ H ++ +A D +I + + ++
Sbjct: 300 YLKKIPQVILVSHDE--ELKDAADHVIRISLENGSSKVEVV 338
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 45/180 (25%), Positives = 74/180 (41%), Gaps = 53/180 (29%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFARVS 936
D++ SL PG + ++G SG GKTTL+ LAG + S GEI +SG +
Sbjct: 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS----GEISLSG--------KTIF 69
Query: 937 GYC-----EQTDIHS--------PNITVEESVIFSAWLRL----APEINSKTKAEFVNEV 979
+ + P++TV ++ + L + + + +
Sbjct: 70 SKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGKGRTAQERQR-----IEAM 122
Query: 980 LETIELDAIKDSLVGIPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
LE L GI + G LS Q++R +A L +P +I +DEP + LD +
Sbjct: 123 LE----------LTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG---YKLEEFVP 243
LN +S L PG + ++G GCGK+T L+ L+G P +GE+S +G + +P
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLP 76
Query: 244 P 244
Sbjct: 77 V 77
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 48/231 (20%), Positives = 84/231 (36%), Gaps = 58/231 (25%)
Query: 848 TVAFQDL--KYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMD 905
+ +DL KY +L +++ S+ PG L+G +G+GK+TL+
Sbjct: 19 QMTVKDLTAKYTEGGNA-------------ILENISFSISPGQRVGLLGRTGSGKSTLLS 65
Query: 906 VLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHS-------PNITV--EESVI 956
EGEI+I G S V ++ I
Sbjct: 66 AFLRLL---NTEGEIQIDG-----------------VSWDSITLEQWRKAFGVIPQKVFI 105
Query: 957 FSAWLR--LAPEINSKTKAEFVNEVLETIEL-DAIK------DSLVGIPGVNGLSTEQRK 1007
FS R L P + + E + +V + + L I+ D ++ G LS ++
Sbjct: 106 FSGTFRKNLDP-NAAHSDQE-IWKVADEVGLRSVIEQFPGKLDFVLVDGGCV-LSHGHKQ 162
Query: 1008 RLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIH 1058
+ +A +++ I+ +DEP+ LD I+ R +K V
Sbjct: 163 LMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ--AFADCTVILCE 211
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 4e-07
Identities = 48/192 (25%), Positives = 89/192 (46%), Gaps = 35/192 (18%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY--VEGEIKISGYPKVQE---- 930
L V+ S+ G AL+G SG+GK+T+ ++ R Y G I + G+ V++
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFT-RF---YDVDSGSICLDGHD-VRDYKLT 413
Query: 931 ----TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAP--EINSKTKA----EFVNEVL 980
FA VS Q ++H N T+ ++ + A +I + EF+ +
Sbjct: 414 NLRRHFALVS----Q-NVHLFNDTIANNIAY-AAEGEYTREQIEQAARQAHAMEFIENMP 467
Query: 981 ETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM 1040
+ + D+++G G + LS QR+R+ IA L+ + ++ +DE T+ LD + +
Sbjct: 468 QGL------DTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQ 520
Query: 1041 RAVKNIVNTGRT 1052
A+ + +T
Sbjct: 521 AALDELQK-NKT 531
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 6e-07
Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 37/202 (18%)
Query: 868 GFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY--VEGEIKISGY 925
+ R++ L ++ + G AL+G SG+GK+T+ ++ R Y EG I + G+
Sbjct: 350 TYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RF---YDIDEGHILMDGH 405
Query: 926 PKVQE--------TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVN 977
++E A VS Q ++H N TV ++ ++ ++ + +
Sbjct: 406 D-LREYTLASLRNQVALVS----Q-NVHLFNDTVANNIAYA-------RTEEYSREQ-IE 451
Query: 978 EVLETIELDA-IK------DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1030
E I D+++G GV LS QR+R+ IA L+ + I+ +DE T+
Sbjct: 452 EAARMAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSA 510
Query: 1031 LDARAAAIVMRAVKNIVNTGRT 1052
LD + + A+ + RT
Sbjct: 511 LDTESERAIQAALDELQK-NRT 531
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 36/159 (22%)
Query: 892 LMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQT------DIH 945
++G SGAGKTT M ++AG GE+ V+ + I
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPS--TGELYFDD--------RLVASNGKLIVPPEDRKIG 85
Query: 946 S--------PNITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDAIKDSLVGI 995
PN+T E++ F EI + V EV + +++ + +
Sbjct: 86 MVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEEVAKILDIHHVLNHF--- 137
Query: 996 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034
P LS Q++R+ +A LV +PS++ +DEP + LDAR
Sbjct: 138 PR--ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 8e-06
Identities = 43/202 (21%), Positives = 75/202 (37%), Gaps = 68/202 (33%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNG----YKL 238
K+ L++V+ ++ G +LGP G GK+TF++ ++G PS TGE+ ++
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNG 73
Query: 239 EEFVPPKTSAYISQNDLHIA----------EMTVRETVDFSARCQGVGSREETMMEVSRR 288
+ VPP+ D I +T E + F + S+EE + +R
Sbjct: 74 KLIVPPE--------DRKIGMVFQTWALYPNLTAFENIAFPLTNMKM-SKEE----IRKR 120
Query: 289 EKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR--RGISGG 346
+E KIL + + R +SG
Sbjct: 121 VEEV-----------------------------AKILDIHHVLN-------HFPRELSGA 144
Query: 347 QKKRLTTGEMIVGPTKALFMDE 368
Q++R+ +V L +DE
Sbjct: 145 QQQRVALARALVKDPSLLLLDE 166
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 56/245 (22%), Positives = 101/245 (41%), Gaps = 61/245 (24%)
Query: 870 ADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGY 925
R ++ L +V+ + G + ++G SGAGK+TL+ + R T G V+G+ +++
Sbjct: 37 GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQ-ELTTL 95
Query: 926 PKVQETFARVSGYCEQTDIHSPNI-------------TVEESVIFSAWLRLA----PEIN 968
+ + T AR I TV +V L L E+
Sbjct: 96 SESELTKAR------------RQIGMIFQHFNLLSSRTVFGNVALP--LELDNTPKDEVK 141
Query: 969 SKTKAEFVNEVLETIELDAIKDSLVGIPG-----VNGLSTEQRKRLTIAVELVANPSIIF 1023
+ V E+L LVG+ + LS Q++R+ IA L +NP ++
Sbjct: 142 RR-----VTELLS----------LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL 186
Query: 1024 MDEPTTGLDARAAAIVMRAVKNIVN--TGRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081
D+ T+ LD ++ +K+I N G TI+ H+ + + D + ++ G +I
Sbjct: 187 CDQATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDV-VKRICDCVAVIS-NGELI 243
Query: 1082 YCGPL 1086
+
Sbjct: 244 EQDTV 248
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 4e-06
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV 242
I+ + + + G++ L+G G GK+T L A++G + G++ +NG +
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKP 74
Query: 243 PPKTSAYISQNDL-------HI-AEMTVRE 264
I++ + I E+TV E
Sbjct: 75 AHV----INRMGIALVPEGRRIFPELTVYE 100
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 8e-06
Identities = 48/198 (24%), Positives = 77/198 (38%), Gaps = 40/198 (20%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYV--EGEIKISGYPKV 928
+ + + + G + L+G +GAGKTT + +AG R G + G+ I+ P
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ-DITNKP-- 74
Query: 929 QETFARVS-GYCEQTDIHSP-------NITVEESVIFSAWLRLAPEINSKTKAEFVNEVL 980
G P +TV E+++ A+ R K K + L
Sbjct: 75 --AHVINRMGIA-----LVPEGRRIFPELTVYENLMMGAYNR-------KDKEG-IKRDL 119
Query: 981 ETI-----ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARA 1035
E I L L G LS +++ L I L++ P ++ MDEP+ GL
Sbjct: 120 EWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174
Query: 1036 AAIVMRAVKNIVNTGRTI 1053
+ V ++ I G TI
Sbjct: 175 VSEVFEVIQKINQEGTTI 192
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 5e-06
Identities = 34/181 (18%), Positives = 67/181 (37%), Gaps = 62/181 (34%)
Query: 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFARVS 936
+++ + G ++G +GAGKT ++++AG SG I + G
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG----RILLDG------------ 61
Query: 937 GYCEQTDIHS------------------PNITVEESVIFSAWLRLAPEINSKTKAEFVNE 978
D+ P++ V++++ F ++ + V +
Sbjct: 62 -----KDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK------DPKRVLD 110
Query: 979 VLETIELDAIKDSLVGIPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 1033
+ I + LS +++R+ +A LV NP I+ +DEP + LD
Sbjct: 111 TAR----------DLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160
Query: 1034 R 1034
R
Sbjct: 161 R 161
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 53/214 (24%), Positives = 87/214 (40%), Gaps = 62/214 (28%)
Query: 178 KSLEAKIN---ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVT-GEVSY 233
+ L A I+ IL V+ ++ G + L+GP G GKST K L+G+ P V GE+
Sbjct: 7 RDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD--PEYTVERGEILL 64
Query: 234 NGYKLEEFVPPKTSAYISQNDLHIAEMTVRETVDFSARC------------QGVGSREET 281
+G +N I E++ E AR GV T
Sbjct: 65 DG----------------EN---ILELSPDE----RARKGLFLAFQYPVEVPGV-----T 96
Query: 282 MMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341
+ R +A + + + + + L++L D ++ + +
Sbjct: 97 IANFLRLALQAKLGREVGVAEFWTKVKKA-----------LELLDWD---ESYLSRYLNE 142
Query: 342 GISGGQKKRLTTGEMIV-GPTKALFMDEITNGLD 374
G SGG+KKR +++V PT A+ +DE +GLD
Sbjct: 143 GFSGGEKKRNEILQLLVLEPTYAV-LDETDSGLD 175
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 55/205 (26%), Positives = 81/205 (39%), Gaps = 57/205 (27%)
Query: 883 SLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY--VEGEIKISG---------------- 924
+ G + ALMG +GAGK+TL +LAG Y GEI + G
Sbjct: 25 VVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENILELSPDERARKGL 82
Query: 925 -----YPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTK-----AE 974
YP ++ P +T+ F LRLA + +K AE
Sbjct: 83 FLAFQYP---------------VEV--PGVTIAN---F---LRLA--LQAKLGREVGVAE 117
Query: 975 FVNEVLETIELDAIKDSLVGIPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA 1033
F +V + +EL +S + +N G S ++KR I LV P+ +DE +GLD
Sbjct: 118 FWTKVKKALELLDWDESYLSRY-LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDI 176
Query: 1034 RAAAIVMRAVKNIVNTGRTIVCTIH 1058
A +V R V + + H
Sbjct: 177 DALKVVARGVNAMRGPNFGALVITH 201
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 14/80 (17%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 1007 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFE 1066
RL +++ L S++ +DEPT LD ++ ++ + ++ H ++ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 1067 AFDELILL-----KTGGRII 1081
A D +I + + ++
Sbjct: 128 AADHVIRISLENGSSKVEVV 147
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN- 1048
D+ VG G LS QR+ + +A L+ P ++ +D T+ LDA V R +
Sbjct: 147 DTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEW 205
Query: 1049 TGRTIVCTIH 1058
RT++
Sbjct: 206 ASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 6e-05
Identities = 56/266 (21%), Positives = 96/266 (36%), Gaps = 68/266 (25%)
Query: 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP 243
+ +L ++ L PG++T L+GP G GKST L P G+V +G L ++
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGEPLVQYDH 88
Query: 244 P---KTSAYISQNDLHIAE-----MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIV 295
A + Q E + RE + + +R TM E++ E+G
Sbjct: 89 HYLHTQVAAVGQ------EPLLFGRSFRENIAYGL------TRTPTMEEITAVAMESGA- 135
Query: 296 PDPDIDTYMKAISVKGVKRTLQTDYILKI-LGLDVCADTMVGNAMRRGI--SGGQKKRLT 352
D+I G D T VG G SGGQ++ +
Sbjct: 136 ----------------------HDFISGFPQGYD----TEVGE---TGNQLSGGQRQAVA 166
Query: 353 TGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALI-----SLLQPAPET 407
++ + L +D T+ LD+ ++ + + T L+ SL + A
Sbjct: 167 LARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA--- 223
Query: 408 FDLFDDIILMAEGKIVYHGPQDHVLA 433
I+ + EG + G ++
Sbjct: 224 ----HHILFLKEGSVCEQGTHLQLME 245
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 4e-05
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT 1049
D+ VG GV LS Q++RL+IA + NP I+ +DE T+ LD + +I+ A+ +
Sbjct: 468 DTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK- 525
Query: 1050 GRT 1052
RT
Sbjct: 526 DRT 528
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 5e-05
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 178 KSLEAKIN---ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVT-GEVSY 233
K L + IL +S + PG + ++GP G GKST L+G +VT G V +
Sbjct: 24 KDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEF 81
Query: 234 NGYKLEEFVP 243
G L P
Sbjct: 82 KGKDLLALSP 91
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 6e-05
Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 61/209 (29%)
Query: 883 SLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGY--VEGEIKISG---------------- 924
+ PG + A+MG +G+GK+TL LAGR+ Y G ++ G
Sbjct: 42 DVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLLALSPEDRAGEGI 99
Query: 925 -----YPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKA------ 973
YP +I P ++ + F L+ A +N+
Sbjct: 100 FMAFQYP---------------VEI--PGVSNQF---F---LQTA--LNAVRSYRGQETL 134
Query: 974 ---EFVNEVLETIELDAIKDSLVGIPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTT 1029
+F + + E I L + + L+ VN G S ++KR I V P + +DE +
Sbjct: 135 DRFDFQDLMEEKIALLKMPEDLLTRS-VNVGFSGGEKKRNDILQMAVLEPELCILDESDS 193
Query: 1030 GLDARAAAIVMRAVKNIVNTGRTIVCTIH 1058
GLD A +V V ++ + R+ + H
Sbjct: 194 GLDIDALKVVADGVNSLRDGKRSFIIVTH 222
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 50/171 (29%)
Query: 892 LMGVSGAGKTTLMDVLAG-RKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHS---- 946
L+G SG+GK+TL+ +AG K + G+I V T++
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDE--------KDV------TELPPKDRN 76
Query: 947 -----------PNITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDAIKDSLV 993
P++TV +++ F LR AP EI+ K V EV + + +D + +
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK-----VREVAKMLHIDKLLNRY- 130
Query: 994 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA--RAAAIVMRA 1042
P LS Q++R+ IA LV P ++ +DEP + LDA R +RA
Sbjct: 131 --PW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 46/207 (22%), Positives = 75/207 (36%), Gaps = 53/207 (25%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLM-------DVLAGRKTSGYVEGEIKISG----- 924
L V S++PG L A++G +G+GK+TLM D G +++
Sbjct: 359 LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP---------ERGRVEVDELDVRT 409
Query: 925 YPKVQETFARVSGYCEQT------DIHS------PNITVEESVIFSAWLRLAPEINSKTK 972
+ Q I + T +E I A ++A
Sbjct: 410 VK--LKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDE--IVEA-AKIA------QI 458
Query: 973 AEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLD 1032
+F+ L DS V G N S Q++RL+IA LV P ++ +D+ T+ +D
Sbjct: 459 HDFIIS------LPEGYDSRVERGGRN-FSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
Query: 1033 ARAAAIVMRAVKNIVNTGRTIVCTIHQ 1059
++ +K T I Q
Sbjct: 512 PITEKRILDGLKR--YTKGCTTFIITQ 536
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Length = 235 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 194 LKPGRMTLLLGPPGCGKST----FLKALSGNLDPSLKVTGE 230
+ G L G PG GK+ F+ + DP + VT E
Sbjct: 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 50/171 (29%)
Query: 892 LMGVSGAGKTTLMDVLAG-RKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHS---- 946
L+G SG GKTT + ++AG + + EG I V T +
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGD--------RDV------TYLPPKDRN 84
Query: 947 -----------PNITVEESVIFSAWLRLAP--EINSKTKAEFVNEVLETIELDAIKDSLV 993
P++TV E++ F ++ P EI+ + V E ++++ + +
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELLQIEELLNRY- 138
Query: 994 GIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA--RAAAIVMRA 1042
P LS QR+R+ +A +V P ++ MDEP + LDA R A MRA
Sbjct: 139 --PA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 36/202 (17%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETF 932
L +L + +R G + ++G SG+GK+T + L + + EGEI I G +
Sbjct: 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAK-- 91
Query: 933 ARVSGYCEQTDIHS---------------PNITVEESVIFSAWLRLAP-EINSKTKAEFV 976
T+++ P++TV ++ LAP ++ + +
Sbjct: 92 --------DTNLNKVREEVGMVFQRFNLFPHMTVLNNIT------LAPMKVRKWPREKAE 137
Query: 977 NEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036
+ +E ++ +KD P LS Q +R+ IA L P I+ DEPT+ LD
Sbjct: 138 AKAMELLDKVGLKDKAHAYPD--SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 195
Query: 1037 AIVMRAVKNIVNTGRTIVCTIH 1058
V+ +K + N G T+V H
Sbjct: 196 GEVLSVMKQLANEGMTMVVVTH 217
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 8e-04
Identities = 49/173 (28%), Positives = 70/173 (40%), Gaps = 54/173 (31%)
Query: 892 LMGVSGAGKTTLMDVLAG-RKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHS---- 946
L+G SG GKTT + +LAG K + GEI V DI
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYKPTS---GEIYFDD--------VLV------NDIPPKYRE 76
Query: 947 -----------PNITVEESVIFSAWLRLA----PEINSKTKAEFVNEVLETIELDAIKDS 991
P++TV E++ F LR E+ + V E+ + +D + D
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFP--LRARRISKDEVEKR-----VVEIARKLLIDNLLDR 129
Query: 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA--RAAAIVMRA 1042
P LS Q++R+ +A LV P ++ DEP + LDA R MRA
Sbjct: 130 K---PT--QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 46/209 (22%), Positives = 86/209 (41%), Gaps = 38/209 (18%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP-KVQET 931
+L V+ R G + +++G SG+GK+T + + + EG I ++G +
Sbjct: 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRD 75
Query: 932 FARVSGYCEQTDIHS---------------PNITVEESVIFSAWLRLAP-EINSKTKAEF 975
++ + ++TV E+V+ AP ++ +K +
Sbjct: 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM------EAPIQVLGLSKHDA 129
Query: 976 VNEVLETIELDAIKDSLVGIPG-VNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTT 1029
L+ + VGI G LS Q++R++IA L P ++ DEPT+
Sbjct: 130 RERALKYLAK-------VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 182
Query: 1030 GLDARAAAIVMRAVKNIVNTGRTIVCTIH 1058
LD V+R ++ + G+T+V H
Sbjct: 183 ALDPELVGEVLRIMQQLAEEGKTMVVVTH 211
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 9e-04
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 50/174 (28%)
Query: 892 LMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHS--- 946
L+G SG GKTT + ++AG + G +I I V+ + +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRG----QIYIGD--------KLVADPEKGIFVPPKDR 81
Query: 947 ------------PNITVEESVIFSAWLRLA----PEINSKTKAEFVNEVLETIELDAIKD 990
P++TV +++ F L+L EI+ + V EV E + L + +
Sbjct: 82 DIAMVFQSYALYPHMTVYDNIAFP--LKLRKVPRQEIDQR-----VREVAELLGLTELLN 134
Query: 991 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDA--RAAAIVMRA 1042
P LS QR+R+ + +V P + MDEP + LDA R MRA
Sbjct: 135 RK---PR--ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1449 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-29 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-22 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-18 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-26 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-20 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-25 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-25 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-21 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-25 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-25 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-22 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-25 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 8e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-20 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-24 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-16 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-17 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-23 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-18 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-22 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-20 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-16 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-16 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 8e-13 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-05 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.003 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 114 bits (287), Expect = 9e-29
Identities = 56/225 (24%), Positives = 95/225 (42%), Gaps = 19/225 (8%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQE 930
+ + L V+ S+ G +T ++G +G+GK+TL++V+ G + G V E K + E
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 75
Query: 931 TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINS----------KTKAEFVNEVL 980
+ QT +TV E+++ +NS + E ++L
Sbjct: 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 135
Query: 981 ETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM 1040
E ++L + D G LS Q K + I L+ NP +I MDEP G+ A +
Sbjct: 136 EFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 190
Query: 1041 RAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
V + G T + H+ + D L ++ G+II G
Sbjct: 191 NHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMF-NGQIIAEGR 233
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 95.0 bits (236), Expect = 5e-22
Identities = 53/255 (20%), Positives = 89/255 (34%), Gaps = 35/255 (13%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV 242
+ L+ VS + G +TL++GP G GKST + ++G L G V + +
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKE 72
Query: 243 PP----KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDP 298
P Q + EMTV E + C G + ++E
Sbjct: 73 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE------ 126
Query: 299 DIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIV 358
+ IL+ L L D G +SGGQ K + G ++
Sbjct: 127 ---------------MVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALM 166
Query: 359 GPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418
K + MDE G+ A+ I + +L + +I + D + +M
Sbjct: 167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIE--HRLDIVLNYIDHLYVMF 224
Query: 419 EGKIVYHGPQDHVLA 433
G+I+ G + +
Sbjct: 225 NGQIIAEGRGEEEIK 239
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 110 bits (275), Expect = 2e-27
Identities = 50/250 (20%), Positives = 93/250 (37%), Gaps = 20/250 (8%)
Query: 859 DTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYV 916
D LE++ + + + + G + L+G +GAGKTT + +AG R G +
Sbjct: 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 917 EGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFV 976
+ + P +TV E+++ A+ R E +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF 123
Query: 977 NEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAA 1036
+ L L G LS +++ L I L++ P ++ MDEP+ GL
Sbjct: 124 SLFPR---LKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILV 175
Query: 1037 AIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAF---DELILLKTGGRIIYCGPLG--KHSS 1091
+ V ++ I G TI+ + A +L+ G+I+ G +
Sbjct: 176 SEVFEVIQKINQEGTTILLVEQ----NALGALKVAHYGYVLE-TGQIVLEGKASELLDNE 230
Query: 1092 QVIEYFEGIS 1101
V + + G++
Sbjct: 231 MVRKAYLGVA 240
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 84.6 bits (209), Expect = 1e-18
Identities = 45/252 (17%), Positives = 84/252 (33%), Gaps = 42/252 (16%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS-LKVTGEVSYNGYKLEEF 241
I+ + + + G++ L+G G GK+T L A++G + K+ K
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 242 VPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDID 301
+ A + + E+TV E + A + + E + P
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIK-----RDLEWIFSLFP----- 127
Query: 302 TYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPT 361
L + G +SGG+++ L G ++
Sbjct: 128 ------------------------RLKERLKQLGGT-----LSGGEQQMLAIGRALMSRP 158
Query: 362 KALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421
K L MDE + GL ++ IQ++ + L+ Q A + ++ G+
Sbjct: 159 KLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVE--QNALGALKVAHYGYVLETGQ 216
Query: 422 IVYHGPQDHVLA 433
IV G +L
Sbjct: 217 IVLEGKASELLD 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 107 bits (268), Expect = 1e-26
Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 868 GFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE-GEIKISG 924
+ + L +V +++ G ++MG SG+GK+T+++++ + T G V IK +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 925 YPKVQETFARVS--GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET 982
+ T R G+ Q P +T E+V + ++ + + + E L+
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 983 IEL-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMR 1041
EL + + N LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ 186
Query: 1042 AVKNIV-NTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086
+K + G+T+V H I++ + +I LK G + L
Sbjct: 187 LLKKLNEEDGKTVVVVTH--DINVARFGERIIYLK-DGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 90.3 bits (224), Expect = 1e-20
Identities = 50/260 (19%), Positives = 88/260 (33%), Gaps = 51/260 (19%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
YK E I L +V+ +K G ++GP G GKST L + P+ GEV +
Sbjct: 11 YKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNI 67
Query: 237 KLEEFVPPKTS-------AYISQNDLHIAEMTVRETVDFSARCQGVG--SREETMMEVSR 287
K + + + ++ Q I +T E V+ + G S EE
Sbjct: 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE 127
Query: 288 REKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQ 347
K A + + A+ +SGGQ
Sbjct: 128 CLKMAEL--------------------------------EERFANHKPNQ-----LSGGQ 150
Query: 348 KKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPET 407
++R+ + + D+ T LDS T +I+ +++L T ++
Sbjct: 151 QQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD--INV 208
Query: 408 FDLFDDIILMAEGKIVYHGP 427
+ II + +G++
Sbjct: 209 ARFGERIIYLKDGEVEREEK 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 106 bits (267), Expect = 3e-26
Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 24/220 (10%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQ- 929
+ + +++ G L+G SG GKTT + ++AG T G I
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTYL 73
Query: 930 ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIK 989
R Q+ P++TV E++ F ++ + + V E ++++ +
Sbjct: 74 PPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELL 130
Query: 990 DSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN- 1048
+ LS QR+R+ +A +V P ++ MDEP + LDA+ + +K +
Sbjct: 131 NRYPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK 185
Query: 1049 TGRTIVCTIHQPSIDIFEAF---DELILLKTGGRIIYCGP 1085
T + H D EA D + ++ G+++ G
Sbjct: 186 LKVTTIYVTH----DQVEAMTMGDRIAVMN-RGQLLQIGS 220
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 103 bits (259), Expect = 4e-25
Identities = 55/269 (20%), Positives = 102/269 (37%), Gaps = 54/269 (20%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+N ++ +K G +LLGP GCGK+T L+ ++G +P+ G + + + ++PPK
Sbjct: 21 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGD-RDVTYLPPK 76
Query: 246 TS--AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTY 303
+ + Q+ MTV E + F + + E +K
Sbjct: 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE--------IDKRV----------- 117
Query: 304 MKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKA 363
+ ++L ++ + +SGGQ++R+ IV
Sbjct: 118 ---------------RWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDV 157
Query: 364 LFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423
L MDE + LD+ + A I++L T + E + D I +M G+++
Sbjct: 158 LLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLL 216
Query: 424 YHGPQDHVLAFFEDCGFRCPERKGVSDFL 452
G V + P V+ F+
Sbjct: 217 QIGSPTEV--------YLRPNSVFVATFI 237
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 105 bits (263), Expect = 1e-25
Identities = 47/220 (21%), Positives = 92/220 (41%), Gaps = 12/220 (5%)
Query: 869 FADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP-- 926
+ R++ L ++ + G AL+G SG+GK+T+ ++ EG I + G+
Sbjct: 23 YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLR 80
Query: 927 -KVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIEL 985
+ Q + +I + + + + ++
Sbjct: 81 EYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN--KM 138
Query: 986 DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKN 1045
D D+++G GV LS QR+R+ IA L+ + I+ +DE T+ LD + + A+
Sbjct: 139 DNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 197
Query: 1046 IVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
+ RT + H+ S E DE+++++ G I+ G
Sbjct: 198 L-QKNRTSLVIAHRLS--TIEQADEIVVVE-DGIIVERGT 233
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 93.0 bits (231), Expect = 2e-21
Identities = 51/258 (19%), Positives = 100/258 (38%), Gaps = 48/258 (18%)
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE 240
++ L +++ + G+ L+G G GKST ++ D G + +G+ L E
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLRE 81
Query: 241 FVPP---KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
+ A +SQN + + E + ++ + A +
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANNIAYA-------RTEEYSREQIEEAARMAYAMDF 134
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI--SGGQKKRLTTGE 355
I +D DT++G G+ SGGQ++R+
Sbjct: 135 --------------------------INKMDNGLDTIIG---ENGVLLSGGQRQRIAIAR 165
Query: 356 MIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415
++ + L +DE T+ LD+ + I A + +L + T+L+ + T + D+I+
Sbjct: 166 ALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHR--LSTIEQADEIV 221
Query: 416 LMAEGKIVYHGPQDHVLA 433
++ +G IV G +LA
Sbjct: 222 VVEDGIIVERGTHSELLA 239
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 105 bits (264), Expect = 2e-25
Identities = 44/209 (21%), Positives = 87/209 (41%), Gaps = 20/209 (9%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVS 936
L ++ ++ G + A+ G +G+GKT+L+ ++ G + EG IK SG RV
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV- 99
Query: 937 GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIP 996
+C Q T++E++IF E K+ + + + ++++G
Sbjct: 100 SFCSQ-FSWIMPGTIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCT 1056
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1057 IHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
+ D++++L G + G
Sbjct: 215 TSKME--HLRKADKILILH-QGSSYFYGT 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.2 bits (234), Expect = 2e-21
Identities = 48/281 (17%), Positives = 93/281 (33%), Gaps = 60/281 (21%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L +++ ++ G M + G G GK++ L + G L+ S G + ++G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG---------- 97
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
++ SQ I T++E + F GV E V + +
Sbjct: 98 RVSFCSQFS-WIMPGTIKENIIF-----GVSYDEYRYKSVVKACQLQ------------- 138
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
I +T++G +SGGQ+ R++ +
Sbjct: 139 ----------------QDITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYL 181
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYH 425
+D LD T Q+ + + T ++ + E D I+++ +G ++
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSK--MEHLRKADKILILHQGSSYFY 238
Query: 426 GPQDHVLA--------FFEDCGFRCPERKGVSDFLQEVLSR 458
G + + F + S L E L R
Sbjct: 239 GTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRR 279
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 104 bits (260), Expect = 3e-25
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 15/220 (6%)
Query: 871 DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSG--YVEGEIKISGYP 926
R ++ L +V+ + G + ++G SGAGK+TL+ + R T G V+G+ +
Sbjct: 15 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE 74
Query: 927 KVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD 986
R G Q + TV +V L P+ K + E+L + L
Sbjct: 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT---ELLSLVGLG 131
Query: 987 AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046
DS LS Q++R+ IA L +NP ++ DE T+ LD ++ +K+I
Sbjct: 132 DKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI 186
Query: 1047 V-NTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
G TI+ H+ + + D + ++ G +I
Sbjct: 187 NRRLGLTILLITHEMDV-VKRICDCVAVIS-NGELIEQDT 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 95.3 bits (237), Expect = 3e-22
Identities = 48/263 (18%), Positives = 94/263 (35%), Gaps = 49/263 (18%)
Query: 177 YKSLEAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGY 236
+ I LN+VS + G++ ++G G GKST ++ ++ P+ G V +G
Sbjct: 11 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQ 67
Query: 237 KLEEFVPPKTS------AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREK 290
+L + + I Q+ ++ TV V E + +
Sbjct: 68 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDE-------VKRR 120
Query: 291 EAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKR 350
+L ++GL D+ N +SGGQK+R
Sbjct: 121 ---------------------------VTELLSLVGLGDKHDSYPSN-----LSGGQKQR 148
Query: 351 LTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDL 410
+ + K L DE T+ LD +T I+ ++ + T L+ + +
Sbjct: 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRI 207
Query: 411 FDDIILMAEGKIVYHGPQDHVLA 433
D + +++ G+++ V +
Sbjct: 208 CDCVAVISNGELIEQDTVSEVFS 230
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 104 bits (260), Expect = 4e-25
Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 11/219 (5%)
Query: 869 FADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP-- 926
+ D + +L D+ S+ G A +G+SG GK+TL++++ G+I I G+
Sbjct: 26 YNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNIK 83
Query: 927 KVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD 986
R Q D + TV+E+++ E+ K ++ + L
Sbjct: 84 DFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIM--NLP 141
Query: 987 AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046
D+ VG GV LS Q++RL+IA + NP I+ +DE T+ LD + +I+ A+ +
Sbjct: 142 QGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL 200
Query: 1047 VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
+ RT + H+ S D++++++ G I+ G
Sbjct: 201 -SKDRTTLIVAHRLS--TITHADKIVVIE-NGHIVETGT 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 102 bits (256), Expect = 1e-24
Identities = 60/257 (23%), Positives = 98/257 (38%), Gaps = 47/257 (18%)
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE 240
+ + IL ++ ++ G +G G GKST + + D + +G++ +G+ +++
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKD 84
Query: 241 FVPPKTSAYIS--QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDP 298
F+ I Q D + TV+E + G T EV K A
Sbjct: 85 FLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF- 136
Query: 299 DIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG--ISGGQKKRLTTGEM 356
I+ L DT VG RG +SGGQK+RL+ +
Sbjct: 137 -------------------------IMNLPQGYDTEVG---ERGVKLSGGQKQRLSIARI 168
Query: 357 IVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416
+ L +DE T+ LD + I + L D T LI + T D I++
Sbjct: 169 FLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHR--LSTITHADKIVV 224
Query: 417 MAEGKIVYHGPQDHVLA 433
+ G IV G ++A
Sbjct: 225 IENGHIVETGTHRELIA 241
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 102 bits (256), Expect = 8e-25
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 14/215 (6%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQE 930
K +L ++ + G + L+G +GAGKTT + +++ + +SG V + +
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEPH 71
Query: 931 TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKD 990
++ Y + N+ E + F A +S E V E L
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIK 128
Query: 991 SLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTG 1050
V S ++L IA L+ NP + +DEPT+GLD A V + +K G
Sbjct: 129 DRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 183
Query: 1051 RTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
TI+ + H ++ D + L+ G I+ G
Sbjct: 184 LTILVSSHNML-EVEFLCDRIALIH-NGTIVETGT 216
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 89.7 bits (222), Expect = 2e-20
Identities = 56/276 (20%), Positives = 96/276 (34%), Gaps = 54/276 (19%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV 242
K IL +S ++ G + L+GP G GK+T L+ +S + PS +G V+ G + E
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEP 70
Query: 243 PP--KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDI 300
K +Y+ + M E + F A S E E
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSE-------IEEM---------- 113
Query: 301 DTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGP 360
+ +I GL V S G ++L ++
Sbjct: 114 -----------------VERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVN 151
Query: 361 TKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420
+ +DE T+GLD A ++ ++Q + + S E L D I L+ G
Sbjct: 152 PRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSS--HNMLEVEFLCDRIALIHNG 209
Query: 421 KIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVL 456
IV G + + + + + + +EV+
Sbjct: 210 TIVETGTVEEL--------KERYKAQNIEEVFEEVV 237
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 100 bits (249), Expect = 5e-24
Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 28/219 (12%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP---KVQETFA 933
L ++G +R G + L+G +GAGK+TL+ +AG + +G I+ +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 934 RVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLV 993
Y Q V L + KT+ E +N+V + LD
Sbjct: 72 LHRAYLSQQQTPPFATPVWH--------YLTLHQHDKTRTELLNDVAGALALDDKLGRST 123
Query: 994 GIPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTTGLDARAAAIVMRAVKNI 1046
LS + +R+ +A ++ ++ +DEP LD + + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1047 VNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
G IV + H + LLK GG+++ G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 78.4 bits (193), Expect = 1e-16
Identities = 51/262 (19%), Positives = 89/262 (33%), Gaps = 60/262 (22%)
Query: 182 AKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEF 241
A+ L +SG ++ G + L+GP G GKST L ++G + G + + G LE +
Sbjct: 10 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG---KGSIQFAGQPLEAW 65
Query: 242 VPPKTS---AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDP 298
K + AY+SQ V + + +R E + +V
Sbjct: 66 SATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK---TRTELLNDV------------- 109
Query: 299 DIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIV 358
L LD +SGG+ +R+ +++
Sbjct: 110 -----------------------AGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVL 141
Query: 359 GPT-------KALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLF 411
T + L +DE N LD + + + L A++ T
Sbjct: 142 QITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHA 199
Query: 412 DDIILMAEGKIVYHGPQDHVLA 433
L+ GK++ G ++ VL
Sbjct: 200 HRAWLLKGGKMLASGRREEVLT 221
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 98.1 bits (244), Expect = 1e-23
Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 16/187 (8%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVS 936
L +T ++ G + G +G GKTTL+ ++ ++GEI +G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPITK--VKGKI 72
Query: 937 GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIP 996
+ + I I+VE+ + A L K + + LE++E+ +K
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK----- 122
Query: 997 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV-NTGRTIVC 1055
+ LS +R+ +A L+ N I +D+P +D + V++++ I+ G I+
Sbjct: 123 -LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 1056 TIHQPSI 1062
+ + S
Sbjct: 182 SREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 80.0 bits (197), Expect = 2e-17
Identities = 33/232 (14%), Positives = 79/232 (34%), Gaps = 52/232 (22%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L ++ ++ G + GP G GK+T LK +S L P GE+ YNG + +
Sbjct: 16 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KG 70
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
++ + + +++V + + A GV + +M+
Sbjct: 71 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA-------------------- 110
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
L+ + + + +S G +R+ ++ +
Sbjct: 111 ----------------LESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIYV 148
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417
+D+ +D + ++++ I +++ + S E D +
Sbjct: 149 LDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR-----EELSYCDVNENL 195
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 99.1 bits (247), Expect = 2e-23
Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 30/227 (13%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE-GEIKISGYPKVQETFA 933
L V+ R G + +++G SG+GK+T + + + + G + I+
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 934 RVS-----------GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLET 982
Q ++TV E+V+ ++ E + L
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSKHDARERALKYLAK 135
Query: 983 IEL-DAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMR 1041
+ + + + LS Q++R++IA L P ++ DEPT+ LD V+R
Sbjct: 136 VGIDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR 190
Query: 1042 AVKNIVNTGRTIVCTIHQPSIDIFEAF---DELILLKTGGRIIYCGP 1085
++ + G+T+V H ++ A +I L G+I G
Sbjct: 191 IMQQLAEEGKTMVVVTH----EMGFARHVSSHVIFLH-QGKIEEEGD 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 84.1 bits (208), Expect = 2e-18
Identities = 55/291 (18%), Positives = 99/291 (34%), Gaps = 66/291 (22%)
Query: 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK 245
+L VS + G + ++G G GKSTFL+ ++ PS G + NG +
Sbjct: 17 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKD 73
Query: 246 TS----------------AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRRE 289
+ Q+ + MTV E V + S+ + RE
Sbjct: 74 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHD------ARE 127
Query: 290 KEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKK 349
+ L +G+D A +SGGQ++
Sbjct: 128 R---------------------------ALKYLAKVGIDERAQ----GKYPVHLSGGQQQ 156
Query: 350 RLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFD 409
R++ + L DE T+ LD +++ +QQL + +++
Sbjct: 157 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM--GFARH 214
Query: 410 LFDDIILMAEGKIVYHGPQDHVLAFFEDCGFRCPERKGVSDFLQEVLSRKD 460
+ +I + +GKI G + V F P+ + FL+ L + +
Sbjct: 215 VSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLKGSLKKLE 257
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.9 bits (241), Expect = 1e-22
Identities = 48/256 (18%), Positives = 99/256 (38%), Gaps = 42/256 (16%)
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE 240
+ +L ++ L+PG +T L+GP G GKST L P+ G++ +G L +
Sbjct: 24 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQ 80
Query: 241 FVPP---KTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPD 297
+ + A + Q + + +++E + + ++ TM E++ ++G
Sbjct: 81 YEHRYLHRQVAAVGQ-EPQVFGRSLQENIAYGLT------QKPTMEEITAAAVKSGA--- 130
Query: 298 PDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMI 357
I GL DT V A + +SGGQ++ + +
Sbjct: 131 -----------------------HSFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARAL 166
Query: 358 VGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILM 417
+ L +D+ T+ LD+++ Q+ + + + L+ + D I+ +
Sbjct: 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFL 224
Query: 418 AEGKIVYHGPQDHVLA 433
G I G ++
Sbjct: 225 EGGAIREGGTHQQLME 240
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.4 bits (232), Expect = 2e-21
Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 14/214 (6%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP---KVQETFA 933
L +T +LRPG +TAL+G +G+GK+T+ +L G++ + G P
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHRYLH 87
Query: 934 RVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-LDAIKDSL 992
R Q + +++E++ + L P + T A + I L D+
Sbjct: 88 RQVAAVGQ-EPQVFGRSLQENIAY--GLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE 144
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TGR 1051
V G LS QR+ + +A L+ P ++ +D+ T+ LDA + V + + R
Sbjct: 145 VDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSR 203
Query: 1052 TIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
+++ S + E D ++ L+ GG I G
Sbjct: 204 SVLLITQHLS--LVEQADHILFLE-GGAIREGGT 234
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 95.0 bits (236), Expect = 4e-22
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 13/221 (5%)
Query: 868 GFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP- 926
+ +L ++ S++ G + ++G SG+GK+TL ++ G++ I G+
Sbjct: 10 RYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67
Query: 927 --KVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 984
R G Q D N ++ +++ + ++ K ++ + E
Sbjct: 68 ALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFIS--E 124
Query: 985 LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
L +++VG G LS QR+R+ IA LV NP I+ DE T+ LD + ++MR +
Sbjct: 125 LREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 183
Query: 1045 NIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
I GRT++ H+ S + D +I+++ G+I+ G
Sbjct: 184 KI-CKGRTVIIIAHRLS--TVKNADRIIVME-KGKIVEQGK 220
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 86.9 bits (215), Expect = 2e-19
Identities = 49/255 (19%), Positives = 91/255 (35%), Gaps = 43/255 (16%)
Query: 181 EAKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE 240
IL++++ +K G + ++G G GKST K + P +V +G+ L
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG---QVLIDGHDLAL 69
Query: 241 FVPPKTSAYIS--QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDP 298
P + D + ++ + + + ++ +V K AG
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISL-------ANPGMSVEKVIYAAKLAGA---- 118
Query: 299 DIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIV 358
+ + G+SGGQ++R+ +V
Sbjct: 119 -----------------------HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV 155
Query: 359 GPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418
K L DE T+ LD + + I+ + ++ T +I + T D II+M
Sbjct: 156 NNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHR--LSTVKNADRIIVME 211
Query: 419 EGKIVYHGPQDHVLA 433
+GKIV G +L+
Sbjct: 212 KGKIVEQGKHKELLS 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 91.9 bits (228), Expect = 3e-21
Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 20/218 (9%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETF 932
++ + D+ + G +G SG GK+TL+ ++AG +T ++ I
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG--DLFIGEKRMNDTPP 69
Query: 933 ARVS-GYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDS 991
A G Q+ P+++V E++ F L + + VN+V E ++L + D
Sbjct: 70 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR 126
Query: 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV-NTG 1050
LS QR+R+ I LVA PS+ +DEP + LDA + + + G
Sbjct: 127 KPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 181
Query: 1051 RTIVCTIHQPSIDIFEAF---DELILLKTGGRIIYCGP 1085
RT++ H D EA D++++L GR+ G
Sbjct: 182 RTMIYVTH----DQVEAMTLADKIVVLD-AGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 83.5 bits (206), Expect = 2e-18
Identities = 45/271 (16%), Positives = 98/271 (36%), Gaps = 52/271 (19%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV 242
++ + ++ + G + +GP GCGKST L+ ++G + +G++ ++ +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 243 PPKTS-AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDID 301
P + + Q+ ++V E + F + G ++
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV-------INQR----------- 110
Query: 302 TYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPT 361
+ + ++L L D +SGGQ++R+ G +V
Sbjct: 111 ----------------VNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 362 KALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421
+DE + LD++ Q+ I +L T + E L D I+++ G+
Sbjct: 150 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGR 208
Query: 422 IVYHGPQDHVLAFFEDCGFRCPERKGVSDFL 452
+ G + + P + V+ F+
Sbjct: 209 VAQVGKPLEL--------YHYPADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 88.4 bits (219), Expect = 6e-20
Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 13/228 (5%)
Query: 862 LEMRERGFA-DRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE- 917
L R FA D ++L D++ +P + A G SG GK+T+ +L + T+G +
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 918 GEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVN 977
I E + G+ Q E + + + +
Sbjct: 62 DGQPIDNIS--LENWRSQIGFVSQDSAIMAGTIRE--NLTYGLEGDYTDEDLWQVLDLAF 117
Query: 978 EVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 1037
+ ++ VG GV +S QR+RL IA + NP I+ +DE T LD+ + +
Sbjct: 118 ARSFVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 1038 IVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
+V +A+ ++ GRT + H+ S D++ ++ G+I G
Sbjct: 177 MVQKALDSL-MKGRTTLVIAHRLS--TIVDADKIYFIE-KGQITGSGK 220
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 87.2 bits (216), Expect = 2e-19
Identities = 54/253 (21%), Positives = 90/253 (35%), Gaps = 46/253 (18%)
Query: 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP 244
IL +S +P + GP G GKST L P+ GE++ +G ++
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 245 KTSAYIS--QNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDT 302
+ I D I T+RE + + +++++ +PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL--- 129
Query: 303 YMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG--ISGGQKKRLTTGEMIVGP 360
+T VG RG ISGGQ++RL +
Sbjct: 130 -----------------------------NTEVG---ERGVKISGGQRQRLAIARAFLRN 157
Query: 361 TKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420
K L +DE T LDS + + + L+ T L+ + T D I + +G
Sbjct: 158 PKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHR--LSTIVDADKIYFIEKG 213
Query: 421 KIVYHGPQDHVLA 433
+I G + ++A
Sbjct: 214 QITGSGKHNELVA 226
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 86.7 bits (214), Expect = 2e-19
Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 15/222 (6%)
Query: 869 FADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVE--GEIKISG 924
F K+ L +V ++ G ++G SGAGKTT M ++AG ++G + + S
Sbjct: 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASN 72
Query: 925 YPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE 984
+ R G QT PN+T E++ F + + + E EV + ++
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE---EVAKILD 129
Query: 985 LDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVK 1044
+ + + LS Q++R+ +A LV +PS++ +DEP + LDAR VK
Sbjct: 130 IHHVLN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVK 184
Query: 1045 NIV-NTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
+ G T++ H P+ DIF D + +L G+++ G
Sbjct: 185 EVQSRLGVTLLVVSHDPA-DIFAIADRVGVLV-KGKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 77.4 bits (190), Expect = 4e-16
Identities = 49/254 (19%), Positives = 93/254 (36%), Gaps = 43/254 (16%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPS---LKVTGEVSYNGYKLE 239
K+ L++V+ ++ G +LGP G GK+TF++ ++G PS L + + KL
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 240 EFVPPKTSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPD 299
+ + Q +T E + F M K
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM--------KMSKEEIRKRV------- 121
Query: 300 IDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVG 359
+ + KIL + + R +SG Q++R+ +V
Sbjct: 122 -------------------EEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVK 157
Query: 360 PTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419
L +DE + LD+ A ++++ T L+ PA + F + D + ++ +
Sbjct: 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK 216
Query: 420 GKIVYHGPQDHVLA 433
GK+V G + +
Sbjct: 217 GKLVQVGKPEDLYD 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 84.2 bits (208), Expect = 2e-18
Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 22/222 (9%)
Query: 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG----RKTSGYVEGE-IKISGYPK 927
++ + +++ ++ G L+G SG GKTT + ++AG + Y+ + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 928 VQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA 987
R Q+ P++TV +++ F LR P + EV E + L
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR---EVAELLGLTE 131
Query: 988 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV 1047
+ + LS QR+R+ + +V P + MDEP + LDA+ + +K +
Sbjct: 132 LLNRKPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186
Query: 1048 -NTGRTIVCTIHQPSIDIFEAF---DELILLKTGGRIIYCGP 1085
G T + H D EA D + ++ G + G
Sbjct: 187 RQLGVTTIYVTH----DQVEAMTMGDRIAVMN-RGVLQQVGS 223
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 77.7 bits (191), Expect = 3e-16
Identities = 57/258 (22%), Positives = 100/258 (38%), Gaps = 50/258 (19%)
Query: 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKL---- 238
++ + +S +K G +LLGP GCGK+T L+ ++G +PS G++ +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 239 -EEFVPPKTS--AYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIV 295
FVPPK A + Q+ MTV + + F + + V +E ++
Sbjct: 72 KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQE-------IDQR----- 119
Query: 296 PDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGE 355
+ ++LGL + +SGGQ++R+ G
Sbjct: 120 ----------------------VREVAELLGLTELLNRKPRE-----LSGGQRQRVALGR 152
Query: 356 MIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415
IV + MDE + LD+ ++ A +++L T + E + D I
Sbjct: 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIA 211
Query: 416 LMAEGKIVYHGPQDHVLA 433
+M G + G D V
Sbjct: 212 VMNRGVLQQVGSPDEVYD 229
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 78.2 bits (192), Expect = 1e-16
Identities = 39/214 (18%), Positives = 88/214 (41%), Gaps = 23/214 (10%)
Query: 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAG----RKTSGYVEGEIKISGYPKVQETF 932
L +++ + G ++G +GAGKT ++++AG ++G+ P+
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE----- 70
Query: 933 ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSL 992
+ Q P++ V++++ F + + V + ++++ + D
Sbjct: 71 KHDIAFVYQNYSLFPHMNVKKNLEFGMRM------KKIKDPKRVLDTARDLKIEHLLDRN 124
Query: 993 VGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV-NTGR 1051
LS +++R+ +A LV NP I+ +DEP + LD R + +
Sbjct: 125 -----PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179
Query: 1052 TIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGP 1085
T++ H + + D + ++ G++I G
Sbjct: 180 TVLHITHDQT-EARIMADRIAVVM-DGKLIQVGK 211
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 76.6 bits (188), Expect = 6e-16
Identities = 48/248 (19%), Positives = 94/248 (37%), Gaps = 47/248 (18%)
Query: 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPK- 245
L+++S ++ G ++LGP G GK+ FL+ ++G P +G + +G + + P K
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 246 TSAYISQNDLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMK 305
A++ QN M V++ ++F R + + + R +
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK--------RVLDT------------- 111
Query: 306 AISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALF 365
+ L ++ D +SGG+++R+ +V K L
Sbjct: 112 ----------------ARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILL 150
Query: 366 MDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYH 425
+DE + LD T + L T L E + D I ++ +GK++
Sbjct: 151 LDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQV 209
Query: 426 GPQDHVLA 433
G + +
Sbjct: 210 GKPEEIFE 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 71.6 bits (175), Expect = 3e-14
Identities = 42/204 (20%), Positives = 88/204 (43%), Gaps = 20/204 (9%)
Query: 886 PGVLTALMGVSGAGKTTLMDVLAG--RKTSGYVEGEIKISGYPKVQETFARVS-GYCEQT 942
L+G +GAGK+ ++++AG + GE++++G R G+ Q
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDR----GEVRLNGADITPLPPERRGIGFVPQD 78
Query: 943 DIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLS 1002
P+++V ++ + E + + V E+ E + + + D LS
Sbjct: 79 YALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKLGIAHLLDRKPA-----RLS 128
Query: 1003 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIV-NTGRTIVCTIHQPS 1061
+R+R+ +A LV P ++ +DEP + +D + ++M ++ + I+ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1062 IDIFEAFDELILLKTGGRIIYCGP 1085
+ DE+ ++ GRI+ G
Sbjct: 189 -EAAMLADEVAVML-NGRIVEKGK 210
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 67.7 bits (165), Expect = 8e-13
Identities = 43/240 (17%), Positives = 84/240 (35%), Gaps = 46/240 (19%)
Query: 195 KPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTS-AYISQN 253
+LLGP G GKS FL+ ++G + P GEV NG + P + ++ Q+
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQD 78
Query: 254 DLHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVK 313
++V + + R R+ + E+
Sbjct: 79 YALFPHLSVYRNIAYGLRNVERVERDRRVREM---------------------------- 110
Query: 314 RTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGL 373
+ + + +SGG+++R+ +V + L +DE + +
Sbjct: 111 -------------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157
Query: 374 DSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGPQDHVLA 433
D T ++ ++ + D L E L D++ +M G+IV G + +
Sbjct: 158 DLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS 216
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 48.1 bits (113), Expect = 1e-06
Identities = 24/195 (12%), Positives = 43/195 (22%), Gaps = 36/195 (18%)
Query: 891 ALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNIT 950
+ G G GKTTL+ + R R ++T
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR--AIGFWTEEV--------RDPETKKRTGFRIITTE 53
Query: 951 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLT 1010
++ + S + + S E
Sbjct: 54 GKKKIFSSKFFTSKKLVGSYGVNVQYFE----------------------ELAIPILERA 91
Query: 1011 IAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDE 1070
+I +DE + + + +V TI + E
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 1071 LILLKTGGRIIYCGP 1085
+ L G +I P
Sbjct: 149 IRRLP-GAVLIELTP 162
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 41.5 bits (96), Expect = 2e-04
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 201 LLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEE 240
++ G PG GK+T +K + L + E
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPE 40
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.3 bits (90), Expect = 0.003
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 1009 LTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAF 1068
L A+ +DE LD + ++ N + + +FE
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKS 402
Query: 1069 DELI 1072
D L+
Sbjct: 403 DALV 406
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1449 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.84 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.76 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.65 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.52 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.37 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.28 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.14 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.97 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.96 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.86 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.6 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.24 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.9 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.9 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.81 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.79 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.73 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.7 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.59 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.57 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.5 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.32 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.22 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.15 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.13 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.13 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.05 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.03 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.0 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.99 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.9 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.87 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.83 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.83 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.83 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.82 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.81 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.78 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.77 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.74 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.73 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.71 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.67 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.64 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.63 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.59 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.58 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.58 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.58 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.58 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.57 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.55 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.51 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.47 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.46 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.43 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.42 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.42 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.42 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.4 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.39 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.39 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.33 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.32 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.31 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.3 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.29 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.28 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.28 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.27 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.26 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.25 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.24 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.24 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.22 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.22 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.21 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.2 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.2 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.14 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.11 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.1 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.1 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.09 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.09 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.09 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.08 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.07 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.05 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.03 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.03 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.03 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.03 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.02 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.02 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.01 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.01 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.01 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.0 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.98 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.98 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.98 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.97 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.95 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.95 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.94 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.93 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.91 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.9 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.82 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.81 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.81 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.81 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.81 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.81 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.8 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.79 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.78 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.77 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.76 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.74 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.73 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.69 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.67 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.66 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.66 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.66 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.65 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.64 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.6 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.58 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.57 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.55 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.55 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.55 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.55 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.52 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.48 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.46 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.45 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.45 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.44 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.41 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.36 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.36 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.35 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.31 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.31 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.3 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.23 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.23 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.23 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.21 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.21 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.21 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.19 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.17 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.16 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.14 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.14 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.13 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.11 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.09 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.05 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.04 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.04 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.03 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 95.01 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.99 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.97 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.96 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.95 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.92 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.92 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.88 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.87 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.87 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.82 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.82 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.81 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.81 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.79 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.74 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.73 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.72 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.65 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.63 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.61 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.6 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.59 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.56 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.56 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.53 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.51 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.51 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.49 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.49 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.49 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.46 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.46 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.45 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.43 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.42 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.38 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.38 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.36 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.32 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.3 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.26 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.19 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.18 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.18 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.17 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.16 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.15 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.12 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.12 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.12 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.11 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.09 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.08 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.06 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.05 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.04 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.04 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.04 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.03 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.01 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.0 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.99 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.96 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.93 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.91 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.85 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.85 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.82 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.81 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.8 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.8 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.79 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.78 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.77 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.76 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.75 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.75 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.75 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.74 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.72 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.72 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.71 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.7 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.64 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.61 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.57 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.54 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.52 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.51 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.5 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.46 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.45 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.43 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.36 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.36 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.35 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.3 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.19 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.16 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.16 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.14 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.14 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 93.1 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.1 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 93.1 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.09 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.06 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.04 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.03 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 92.96 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.93 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.91 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.87 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.85 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.83 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.83 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.82 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.82 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.82 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 92.74 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.74 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.72 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.64 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.64 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.64 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.61 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.59 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.56 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.55 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.45 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.42 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.41 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.39 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.39 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.29 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.27 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.26 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.24 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.24 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.22 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.16 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.14 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.13 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.09 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.08 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.07 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.01 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.97 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 91.96 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.87 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.87 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.84 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.74 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.69 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.62 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.61 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.59 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.52 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.51 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.44 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.38 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.36 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.35 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.31 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.3 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 91.29 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.26 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.09 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.08 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 91.08 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.05 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.03 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.0 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.94 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.92 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.83 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 90.83 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.78 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 90.78 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.76 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.75 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.74 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.67 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.66 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.64 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.62 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.57 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.48 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.45 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.4 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 90.3 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 90.27 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 90.21 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.2 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.2 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.17 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 90.13 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.11 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.09 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.99 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.99 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.98 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.91 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.9 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.86 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.84 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.75 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 89.51 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.42 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 89.41 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 89.3 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 89.27 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 89.21 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 89.21 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 89.19 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.05 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 88.98 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.89 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 88.86 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 88.82 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 88.75 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 88.74 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.71 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 88.71 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 88.6 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 88.55 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.5 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.24 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 88.16 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.15 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 88.11 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 88.04 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 88.0 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.95 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 87.78 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.75 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 87.68 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.65 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 87.47 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 87.16 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.16 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.08 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 87.02 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.98 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 86.92 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 86.88 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 86.75 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 86.7 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 86.66 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 86.65 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.56 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.27 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.22 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.12 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 86.03 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 85.64 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.62 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.39 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 84.85 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.63 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 84.61 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 84.52 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.44 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.02 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 83.66 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 83.36 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 83.3 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 83.28 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 83.0 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 82.51 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 82.25 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 81.54 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 80.05 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=324.66 Aligned_cols=214 Identities=23% Similarity=0.337 Sum_probs=181.6
Q ss_pred EEEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 78984450133043101002545565323002035773782999965799974479842409977870478999969227
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~ 927 (1449)
.+.++|++.+. +...+|+|||+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 3 ~i~v~nl~k~y-------------g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p--~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVF-------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred CEEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEE
T ss_conf 18998699998-------------999998560668869989999999998099999999648788--989899999980
Q ss_pred CC---C----CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 40---0----0133489970488889999899999999983049999957899999999998399421122246888887
Q 000517 928 VQ---E----TFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNG 1000 (1449)
Q Consensus 928 ~~---~----~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~g 1000 (1449)
.. . ..++.+|||+|++.++|.+||+|++.|...++. .+.++.+++++++++.++|.+.+|..+. .
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~---~~~~e~~~~v~~~l~~~~l~~~~~~~p~-----~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKPR-----E 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCGG-----G
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHCCCHH-----H
T ss_conf 3566444245322551200221222310116676330687729---9989999999999987599667629933-----4
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCE
Q ss_conf 8999999999999996199788993999999999999999999999966-998999935852999986083989906959
Q 000517 1001 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079 (1449)
Q Consensus 1001 LSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG~ 1079 (1449)
||||||||++||++|+.+|++|++||||+|||+.++..+++.++++.+. |.|||+++|++. ++...+|++++|. +|+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~-~G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN-RGV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEE-CCE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-9999699999998-999
Q ss_pred EEEECCC
Q ss_conf 9994488
Q 000517 1080 IIYCGPL 1086 (1449)
Q Consensus 1080 ~~y~G~~ 1086 (1449)
++..|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEECCH
T ss_conf 9998599
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=330.28 Aligned_cols=202 Identities=27% Similarity=0.406 Sum_probs=129.7
Q ss_pred CCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCH
Q ss_conf 532300203577378299996579997447984240997787047899996922740-0013348997048888999989
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFARVSGYCEQTDIHSPNITV 951 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~~-~~~~~~~~yv~Q~d~~~~~lTv 951 (1449)
...+|+|||+.+++||++||+||||||||||+++|+|...+ .+|+|.+||.+... ...+|.+|||+|++.++|.+||
T Consensus 12 ~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p--~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv 89 (232)
T d2awna2 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 89 (232)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEESSSCCTTSCGGGTCEEEECSSCCC------
T ss_pred CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHH
T ss_conf 99998111778869989999989998299999999658788--8888999999778886444322234334202643337
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 99999999830499999578999999999983994211222468888878999999999999996199788993999999
Q 000517 952 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031 (1449)
Q Consensus 952 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTsgL 1031 (1449)
+|++.|...++. .+.++.+++++++++.++|.+.+|..+. .||||||||++||++|+.+|++|+|||||+||
T Consensus 90 ~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQRvaiAraL~~~P~illlDEPts~L 161 (232)
T d2awna2 90 AENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 161 (232)
T ss_dssp ------------------CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEEEEESTTTTS
T ss_pred HHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 889789998759---9889999999999975788656648965-----69999999999999970399889975888788
Q ss_pred CHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 99999999999999996-69989999358529999860839899069599994488
Q 000517 1032 DARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1032 D~~~~~~i~~~l~~l~~-~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~ 1086 (1449)
|+.++..+++.++++.+ .|.|||+++|++. ++....|++++|. +|+++..|++
T Consensus 162 D~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~~ 215 (232)
T d2awna2 162 DAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKP 215 (232)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEECH
T ss_conf 9889989999999998742987999948999-9999699999997-9999998089
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=330.63 Aligned_cols=207 Identities=20% Similarity=0.364 Sum_probs=184.7
Q ss_pred CCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCH
Q ss_conf 321224156883873999976999947999999929999999701099998850788889-9518997578866889999
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTV 262 (1449)
Q Consensus 184 ~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~-~~~~aYV~Q~D~h~~~lTV 262 (1449)
.++|+|||+.+++|++++|+|||||||||||++|+|..+|+ +|+|.+||.++++..+ ++.++||+|++.+++.+||
T Consensus 13 ~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv 89 (232)
T d2awna2 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 89 (232)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC------
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHH
T ss_conf 99981117788699899999899982999999996587888---888999999778886444322234334202643337
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999998802999822355672099886299999796899999863100012129999999099753453234644556
Q 000517 263 RETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG 342 (1449)
Q Consensus 263 rEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rG 342 (1449)
+||+.|+.++++.... + .+..++.+++.+||++.+|..+.+
T Consensus 90 ~eni~~~~~~~~~~~~----------~------------------------~~~~v~~~l~~~~l~~~~~~~~~~----- 130 (232)
T d2awna2 90 AENMSFGLKLAGAKKE----------V------------------------INQRVNQVAEVLQLAHLLDRKPKA----- 130 (232)
T ss_dssp ---------------C----------H------------------------HHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHCCCCHH----------H------------------------HHHHHHHHHHHCCCHHHHHCCHHH-----
T ss_conf 8897899987599889----------9------------------------999999999757886566489656-----
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEECCEE
Q ss_conf 77323315999999918994989968999999999999999999998717968999982590048852271999818949
Q 000517 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422 (1449)
Q Consensus 343 LSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~~G~i 422 (1449)
|||||||||+||++|+.+|++++|||||+|||+.++.+|++.|+++.+..+.|+|++.| ...++..++|+|++|.+|++
T Consensus 131 LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTH-d~~~a~~~~dri~vm~~G~i 209 (232)
T d2awna2 131 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGRV 209 (232)
T ss_dssp ---------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEES-CHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC-CHHHHHHHCCEEEEEECCEE
T ss_conf 99999999999999703998899758887889889989999999998742987999948-99999996999999979999
Q ss_pred EEECCHHHHHH
Q ss_conf 99459555999
Q 000517 423 VYHGPQDHVLA 433 (1449)
Q Consensus 423 vy~Gp~~~~~~ 433 (1449)
+.+|+.+++.+
T Consensus 210 v~~G~~~el~~ 220 (232)
T d2awna2 210 AQVGKPLELYH 220 (232)
T ss_dssp EEEECHHHHHH
T ss_pred EEEECHHHHHH
T ss_conf 99808999973
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=327.61 Aligned_cols=202 Identities=22% Similarity=0.355 Sum_probs=136.4
Q ss_pred CCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCH
Q ss_conf 532300203577378299996579997447984240997787047899996922740-0013348997048888999989
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFARVSGYCEQTDIHSPNITV 951 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~~-~~~~~~~~yv~Q~d~~~~~lTv 951 (1449)
..++|+|||+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...+|.+|||+|+..++|++||
T Consensus 18 ~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p--~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHH
T ss_conf 99998130678879989999999998299999999758999--8787999164135477000158998003353422209
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 99999999830499999578999999999983994211222468888878999999999999996199788993999999
Q 000517 952 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGL 1031 (1449)
Q Consensus 952 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTsgL 1031 (1449)
+|++.|.+.++ ..+.++.+++++++++.++|.+.+|..+. .||||||||++||++|+.+|+||+|||||+||
T Consensus 96 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRvaiAraL~~~P~iLllDEPts~L 167 (239)
T d1v43a3 96 YENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNL 167 (239)
T ss_dssp HHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred HHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHCCCCCCEEECCCCCCC
T ss_conf 99999999873---99999999999999987598556609954-----69999988999976640499824306886668
Q ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 999999999999999966-9989999358529999860839899069599994488
Q 000517 1032 DARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1032 D~~~~~~i~~~l~~l~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~ 1086 (1449)
|+.++..+++.++++.+. |.|+|+++|++. ++.+.+|++++|. +|+++..|++
T Consensus 168 D~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~~ 221 (239)
T d1v43a3 168 DAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMN-RGQLLQIGSP 221 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCH
T ss_conf 9899989999999998731980799948999-9998699999998-9999998599
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=323.29 Aligned_cols=218 Identities=23% Similarity=0.311 Sum_probs=186.2
Q ss_pred EEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 89844501330431010025455653230020357737829999657999744798424099778704789999692274
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~ 928 (1449)
++++|++.+.... ....++|+|||+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p--~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC--SEEEEEETTEEEC
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCC--CCCCEEECCEEEE
T ss_conf 7998279996999---------8148986150578869979999899989888999987588636--6773288676852
Q ss_pred C------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0------0013348997048888999989999999998304999995789999999999839942112224688888789
Q 000517 929 Q------ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLS 1002 (1449)
Q Consensus 929 ~------~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gLS 1002 (1449)
. ..+++.+|||+|+..++|.+||+|++.|...++. .+.++.++.++++++.++|.+.+|..++ .||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~~-----~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCBS-----CCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHHCCHH-----HCC
T ss_conf 08755511554166430225222799649999999999849---9989999999999997699035548943-----499
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEE
Q ss_conf 99999999999996199788993999999999999999999999966-99899993585299998608398990695999
Q 000517 1003 TEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081 (1449)
Q Consensus 1003 gGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~ 1081 (1449)
||||||++||++|+.+|++|++||||+|||+.++..|++.++++.+. |.|||+++|++. ++...+|++++|. +|+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~-~G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEE-TTEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEE-CCEEE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-9998699999997-99999
Q ss_pred EECCCC
Q ss_conf 944888
Q 000517 1082 YCGPLG 1087 (1449)
Q Consensus 1082 y~G~~~ 1087 (1449)
+.|++.
T Consensus 221 ~~G~~~ 226 (240)
T d3dhwc1 221 EQDTVS 226 (240)
T ss_dssp EEEETT
T ss_pred EECCHH
T ss_conf 987999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=323.56 Aligned_cols=207 Identities=24% Similarity=0.398 Sum_probs=183.2
Q ss_pred CCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCH
Q ss_conf 321224156883873999976999947999999929999999701099998850788889-9518997578866889999
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTV 262 (1449)
Q Consensus 184 ~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~-~~~~aYV~Q~D~h~~~lTV 262 (1449)
.++|+|||+.+++|++++|+||||||||||+++|+|.++|+ +|+|.+||.++....+ ++.++||+|+..+++.+||
T Consensus 19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHH
T ss_conf 99981306788799899999999982999999997589998---787999164135477000158998003353422209
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999998802999822355672099886299999796899999863100012129999999099753453234644556
Q 000517 263 RETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRG 342 (1449)
Q Consensus 263 rEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rG 342 (1449)
+||+.|.+++++.. +.+ .+..++.+++.+||++.+|..+. .
T Consensus 96 ~enl~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 136 (239)
T d1v43a3 96 YENIAFPLKIKKFP----------KDE------------------------IDKRVRWAAELLQIEELLNRYPA-----Q 136 (239)
T ss_dssp HHHHHTTCC--CCC----------HHH------------------------HHHHHHHHHHHTTCGGGTTSCTT-----T
T ss_pred HHHHHHHHHHCCCC----------HHH------------------------HHHHHHHHHHHCCCHHHHCCCHH-----H
T ss_conf 99999999873999----------999------------------------99999999987598556609954-----6
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEECCEE
Q ss_conf 77323315999999918994989968999999999999999999998717968999982590048852271999818949
Q 000517 343 ISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKI 422 (1449)
Q Consensus 343 LSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~~G~i 422 (1449)
|||||||||+||++|+.+|++++|||||+|||+.++.+|++.|+++.+..+.|++++.|. ..++..++|+|++|.+|++
T Consensus 137 LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd-~~~a~~~~dri~vm~~G~i 215 (239)
T d1v43a3 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQL 215 (239)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHCCEEEEEECCEE
T ss_conf 999998899997664049982430688666898999899999999987319807999489-9999986999999989999
Q ss_pred EEECCHHHHHH
Q ss_conf 99459555999
Q 000517 423 VYHGPQDHVLA 433 (1449)
Q Consensus 423 vy~Gp~~~~~~ 433 (1449)
+..|+.+++..
T Consensus 216 v~~G~~~el~~ 226 (239)
T d1v43a3 216 LQIGSPTEVYL 226 (239)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHH
T ss_conf 99859999986
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=324.51 Aligned_cols=216 Identities=27% Similarity=0.392 Sum_probs=181.0
Q ss_pred EEEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 78984450133043101002545565323002035773782999965799974479842409977870478999969227
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~ 927 (1449)
.++.+|++++.+ .++..+|+|||+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~-----------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p--~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFK-----------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEG-----------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEEEEEEEC-----------CCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEE
T ss_conf 899975799988-----------9998998040789879989999989998099999999758688--874599999995
Q ss_pred CC------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 40------001334899704888899998999999999830499999578999999999983994211222468888878
Q 000517 928 VQ------ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGL 1001 (1449)
Q Consensus 928 ~~------~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gL 1001 (1449)
.. ...+|.+|||+|+..++|++||+|++.|....+ ..+.++.+++++++++.++|.+.+|..++ .|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----EL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCHH-----HC
T ss_conf 13731115312045147730433466665777766556761---37999999999999866591766648954-----59
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEE
Q ss_conf 99999999999999619978899399999999999999999999996-69989999358529999860839899069599
Q 000517 1002 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRI 1080 (1449)
Q Consensus 1002 SgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~ 1080 (1449)
|||||||++||++|+.+|++|++||||+|||+.++..+++.++++.+ .|.|+|+++|++. ++.+.+|++++|. +|++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~-~G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLV-KGKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-9999699999998-9999
Q ss_pred EEECCC
Q ss_conf 994488
Q 000517 1081 IYCGPL 1086 (1449)
Q Consensus 1081 ~y~G~~ 1086 (1449)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEECCH
T ss_conf 998699
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=320.05 Aligned_cols=207 Identities=26% Similarity=0.407 Sum_probs=182.3
Q ss_pred CCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC------C-CCEEEEECCCCCC
Q ss_conf 32122415688387399997699994799999992999999970109999885078888------9-9518997578866
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV------P-PKTSAYISQNDLH 256 (1449)
Q Consensus 184 ~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~------~-~~~~aYV~Q~D~h 256 (1449)
.++|+|||+.+++|++++|+||||||||||+++|+|..+|+ +|+|.+||.++.... + ++.++||+|++.+
T Consensus 16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L 92 (240)
T d1g2912 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHH
T ss_conf 99985606688699899999999980999999996487889---898999999803566444245322551200221222
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 88999999999998802999822355672099886299999796899999863100012129999999099753453234
Q 000517 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVG 336 (1449)
Q Consensus 257 ~~~lTVrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG 336 (1449)
++.+||+|++.|..+.++.. +.+. +..++++++.+||++.+|..++
T Consensus 93 ~~~ltV~eni~~~~~~~~~~----------~~e~------------------------~~~v~~~l~~~~l~~~~~~~p~ 138 (240)
T d1g2912 93 YPHMTVYDNIAFPLKLRKVP----------RQEI------------------------DQRVREVAELLGLTELLNRKPR 138 (240)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------HHHH------------------------HHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCHHHHHHHHHHHHHHCCCC----------HHHH------------------------HHHHHHHHHHCCCHHHHCCCHH
T ss_conf 31011667633068772999----------8999------------------------9999999987599667629933
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEE
Q ss_conf 64455677323315999999918994989968999999999999999999998717968999982590048852271999
Q 000517 337 NAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416 (1449)
Q Consensus 337 ~~~~rGLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~Iil 416 (1449)
+ |||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.+..+.|+|++.| ..+++..++|+|++
T Consensus 139 ~-----LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTH-d~~~~~~~~drv~v 212 (240)
T d1g2912 139 E-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH-DQVEAMTMGDRIAV 212 (240)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEEE
T ss_pred H-----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHCCEEEE
T ss_conf 4-----99999999999999826998898258876569899989999999998636988999959-99999996999999
Q ss_pred EECCEEEEECCHHHHHH
Q ss_conf 81894999459555999
Q 000517 417 MAEGKIVYHGPQDHVLA 433 (1449)
Q Consensus 417 L~~G~ivy~Gp~~~~~~ 433 (1449)
|.+|++++.|+.+++..
T Consensus 213 m~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 213 MNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHH
T ss_conf 98999999859999982
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=319.74 Aligned_cols=219 Identities=23% Similarity=0.373 Sum_probs=184.3
Q ss_pred EEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 89844501330431010025455653230020357737829999657999744798424099778704789999692274
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~ 928 (1449)
++++|++++.... .....+|+|||+.+++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p--~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCC--CCCEEEECCEECC
T ss_conf 8999079994899---------8208987133778849979999889999821655750688777--7662699999857
Q ss_pred C---C---CC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 0---0---01-3348997048888999989999999998304999995789999999999839942-1122246888887
Q 000517 929 Q---E---TF-ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-IKDSLVGIPGVNG 1000 (1449)
Q Consensus 929 ~---~---~~-~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~g 1000 (1449)
. . .+ ++.+|||+|+..++|.+||+|++.+...++.....+.+++.+.+.+.++.++|.+ .++..+. .
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~-----~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN-----Q 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG-----G
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCHH-----H
T ss_conf 68855512312555778804124176866888775788872247899999999999988762423455348802-----3
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCE
Q ss_conf 8999999999999996199788993999999999999999999999966-998999935852999986083989906959
Q 000517 1001 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079 (1449)
Q Consensus 1001 LSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG~ 1079 (1449)
||||||||++||++|+.+|++|++||||+|||+.++..|++.++++.+. |.|||+++|+++ +...+|++++|. +|+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~-~G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLK-DGE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHH--HHHHCCEEEEEE-CCE
T ss_conf 89999999998756522788899468765469899999999999999843999999878889--998699899998-999
Q ss_pred EEEECCC
Q ss_conf 9994488
Q 000517 1080 IIYCGPL 1086 (1449)
Q Consensus 1080 ~~y~G~~ 1086 (1449)
++..|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
T ss_conf 9995257
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=318.59 Aligned_cols=218 Identities=25% Similarity=0.342 Sum_probs=181.9
Q ss_pred EEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 89844501330431010025455653230020357737829999657999744798424099778704789999692274
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~ 928 (1449)
+..+|++.+. +++++|+|||+.+++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 I~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p--~~G~i~i~G~~i~ 67 (238)
T d1vpla_ 3 VVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNVV 67 (238)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEETT
T ss_pred EEEEEEEEEE-------------CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEECC
T ss_conf 8999589999-------------999998062568848979999999999999999999669887--8887999867244
Q ss_pred C--CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 0--00133489970488889999899999999983049999957899999999998399421122246888887899999
Q 000517 929 Q--ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQR 1006 (1449)
Q Consensus 929 ~--~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gLSgGqr 1006 (1449)
. ...++.++||+|++..++++|+.|++.|.+.++. .+.++.++.++++++.++|.+..+..++ .||||||
T Consensus 68 ~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~ 139 (238)
T d1vpla_ 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMV 139 (238)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHH
T ss_pred CCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHHH
T ss_conf 6839887218675001546878667788898998617---9989999999999986797888850453-----3799898
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 99999999961997889939999999999999999999999669989999358529999860839899069599994488
Q 000517 1007 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1007 kRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~ 1086 (1449)
||++||++|+.+|++|+|||||+|||+.++..+++.++++++.|+||++++|+++ ++...+|++++|. +|++++.|++
T Consensus 140 qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~-~G~iv~~g~~ 217 (238)
T d1vpla_ 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIH-NGTIVETGTV 217 (238)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEE-TTEEEEEEEH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCH
T ss_conf 9999999986599988733798897989999999999999965998999959899-9999699999998-9999999289
Q ss_pred CCCHHHHHH
Q ss_conf 888157999
Q 000517 1087 GKHSSQVIE 1095 (1449)
Q Consensus 1087 ~~~~~~~~~ 1095 (1449)
+++.+
T Consensus 218 ----~el~~ 222 (238)
T d1vpla_ 218 ----EELKE 222 (238)
T ss_dssp ----HHHHH
T ss_pred ----HHHHH
T ss_conf ----99986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=321.89 Aligned_cols=196 Identities=20% Similarity=0.334 Sum_probs=120.1
Q ss_pred EECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 300203577378299996579997447984240997787047899996922740-0013348997048888999989999
Q 000517 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFARVSGYCEQTDIHSPNITVEES 954 (1449)
Q Consensus 876 iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~~-~~~~~~~~yv~Q~d~~~~~lTv~E~ 954 (1449)
+|+|||+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...+|.+|||+|+..++|.+||+|+
T Consensus 15 aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p--~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~en 92 (229)
T d3d31a2 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKN 92 (229)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHH
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHHH
T ss_conf 88433789879989999989998299999999647688--8788999567346521657405615121111746657788
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf 99999830499999578999999999983994211222468888878999999999999996199788993999999999
Q 000517 955 VIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDAR 1034 (1449)
Q Consensus 955 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~ 1034 (1449)
+.|...++... . +++++++++.++|.+..|..++ .||||||||++||++|+.+|++|+|||||+|||+.
T Consensus 93 l~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~ 161 (229)
T d3d31a2 93 LEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161 (229)
T ss_dssp HHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHH
T ss_pred HHHHHHHCCCC---H---HHHHHHHHHHHCCHHHHHCCHH-----HCCHHHHCCHHHHHHHHCCCCCEEECCCCCCCCHH
T ss_conf 88877640553---8---9999999998256555758955-----47999840140304344367714434787679989
Q ss_pred HHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 99999999999996-69989999358529999860839899069599994488
Q 000517 1035 AAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1035 ~~~~i~~~l~~l~~-~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~ 1086 (1449)
++..+++.++++.+ .|.|||+++|++. ++.+.+|++++|. +|+++..|++
T Consensus 162 ~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~-~G~iv~~g~~ 212 (229)
T d3d31a2 162 TQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVM-DGKLIQVGKP 212 (229)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEES-SSCEEEEECH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEE-CCEEEEECCH
T ss_conf 9999999999998647968999749999-9999699999997-9999998699
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=319.56 Aligned_cols=208 Identities=23% Similarity=0.330 Sum_probs=182.2
Q ss_pred CCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC------CCEEEEECCCCC
Q ss_conf 33321224156883873999976999947999999929999999701099998850788889------951899757886
Q 000517 182 AKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP------PKTSAYISQNDL 255 (1449)
Q Consensus 182 ~~~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~------~~~~aYV~Q~D~ 255 (1449)
...++|+|||+.+++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++..... ++.++||+|+..
T Consensus 16 ~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~ 92 (240)
T d3dhwc1 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92 (240)
T ss_dssp CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCC
T ss_pred EEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCC
T ss_conf 1489861505788699799998999898889999875886366---7732886768520875551155416643022522
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 68899999999999880299982235567209988629999979689999986310001212999999909975345323
Q 000517 256 HIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMV 335 (1449)
Q Consensus 256 h~~~lTVrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~V 335 (1449)
+++.+||+|++.|+.+..+.... + ....++.+|+.+||++.+|..+
T Consensus 93 l~~~~tv~eni~~~l~~~~~~~~--------------------~--------------~~~~v~~~L~~vgL~~~~~~~~ 138 (240)
T d3dhwc1 93 LLSSRTVFGNVALPLELDNTPKD--------------------E--------------VKRRVTELLSLVGLGDKHDSYP 138 (240)
T ss_dssp CCTTSBHHHHHHHHHHTTTCCTT--------------------H--------------HHHHHHHHHHHHSTTTTTSSCB
T ss_pred CCCCCCHHHHHHHHHHHCCCCHH--------------------H--------------HHHHHHHHHHHCCCCHHHHCCH
T ss_conf 27996499999999998499989--------------------9--------------9999999999769903554894
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEE
Q ss_conf 46445567732331599999991899498996899999999999999999999871796899998259004885227199
Q 000517 336 GNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415 (1449)
Q Consensus 336 G~~~~rGLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~Ii 415 (1449)
++ |||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.+..+.|+++.. |...++..++|+|+
T Consensus 139 ~~-----LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vT-Hdl~~~~~~~dri~ 212 (240)
T d3dhwc1 139 SN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLIT-HEMDVVKRICDCVA 212 (240)
T ss_dssp SC-----CCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEB-SCHHHHHHHCSEEE
T ss_pred HH-----CCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC-CCHHHHHHHCCEEE
T ss_conf 34-----9999998999864010589868744655658988856799999999864697899983-89999998699999
Q ss_pred EEECCEEEEECCHHHHH
Q ss_conf 98189499945955599
Q 000517 416 LMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 416 lL~~G~ivy~Gp~~~~~ 432 (1449)
+|.+|++++.|+.+++.
T Consensus 213 vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 213 VISNGELIEQDTVSEVF 229 (240)
T ss_dssp EEETTEEEEEEETTTTT
T ss_pred EEECCEEEEECCHHHHH
T ss_conf 99799999987999997
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=322.89 Aligned_cols=208 Identities=22% Similarity=0.343 Sum_probs=181.6
Q ss_pred CCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC----C--CCEEEEECCCCCC
Q ss_conf 332122415688387399997699994799999992999999970109999885078888----9--9518997578866
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV----P--PKTSAYISQNDLH 256 (1449)
Q Consensus 183 ~~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~----~--~~~~aYV~Q~D~h 256 (1449)
+..+|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... + ++.++||+|+..+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCC
T ss_conf 989980407898799899999899980999999997586888---74599999995137311153120451477304334
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 88999999999998802999822355672099886299999796899999863100012129999999099753453234
Q 000517 257 IAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVG 336 (1449)
Q Consensus 257 ~~~lTVrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG 336 (1449)
+|.+||+||+.|+.+..+.. +.+ .+..++.+++.+||++.+|..++
T Consensus 94 ~p~ltv~eni~~~l~~~~~~----------~~~------------------------~~~~v~~~l~~~gL~~~~~~~p~ 139 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNMKMS----------KEE------------------------IRKRVEEVAKILDIHHVLNHFPR 139 (242)
T ss_dssp CTTSCHHHHHHGGGTTSSCC----------HHH------------------------HHHHHHHHHHHTTCGGGTTSCGG
T ss_pred CCCCCHHHHHHHHHHHHCCC----------HHH------------------------HHHHHHHHHHHCCHHHHHHCCHH
T ss_conf 66665777766556761379----------999------------------------99999999866591766648954
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEE
Q ss_conf 64455677323315999999918994989968999999999999999999998717968999982590048852271999
Q 000517 337 NAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416 (1449)
Q Consensus 337 ~~~~rGLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~Iil 416 (1449)
+ |||||||||+||++|+.+|+++++||||+|||+.++.++++.|+++.+..+.|+|++.|. ..++..++|+|++
T Consensus 140 ~-----LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd-~~~~~~~~dri~v 213 (242)
T d1oxxk2 140 E-----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIADRVGV 213 (242)
T ss_dssp G-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEE
T ss_pred H-----CCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHCCEEEE
T ss_conf 5-----999998589987577604661454478667998998899899999986359879999799-9999996999999
Q ss_pred EECCEEEEECCHHHHHH
Q ss_conf 81894999459555999
Q 000517 417 MAEGKIVYHGPQDHVLA 433 (1449)
Q Consensus 417 L~~G~ivy~Gp~~~~~~ 433 (1449)
|.+|+++..|+.+++..
T Consensus 214 m~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHH
T ss_conf 98999999869999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=319.55 Aligned_cols=203 Identities=23% Similarity=0.362 Sum_probs=181.2
Q ss_pred CCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHH
Q ss_conf 21224156883873999976999947999999929999999701099998850788889-95189975788668899999
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTVR 263 (1449)
Q Consensus 185 ~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~-~~~~aYV~Q~D~h~~~lTVr 263 (1449)
.+|+|||+.+++|++++|+||||||||||+++|+|..+|+ +|+|.++|.++.+..+ ++.++||+|+..+++.+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHH
T ss_conf 7884337898799899999899982999999996476888---7889995673465216574056151211117466577
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99999988029998223556720998862999997968999998631000121299999990997534532346445567
Q 000517 264 ETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343 (1449)
Q Consensus 264 EtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rGL 343 (1449)
||+.|+.+.++... ...++.+++.+||.+-.|..+++ |
T Consensus 91 enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~~-----L 128 (229)
T d3d31a2 91 KNLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPLT-----L 128 (229)
T ss_dssp HHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGGG-----S
T ss_pred HHHHHHHHHCCCCH-------------------------------------HHHHHHHHHHHCCHHHHHCCHHH-----C
T ss_conf 88888776405538-------------------------------------99999999982565557589554-----7
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEECCEEE
Q ss_conf 73233159999999189949899689999999999999999999987179689999825900488522719998189499
Q 000517 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423 (1449)
Q Consensus 344 SGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~~G~iv 423 (1449)
||||||||+||++|+.+|++++|||||+|||+.+..+|++.|+++.+..+.|++++.| ...++..++|+|++|.+|+++
T Consensus 129 SGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtH-d~~~~~~~~drv~vm~~G~iv 207 (229)
T d3d31a2 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH-DQTEARIMADRIAVVMDGKLI 207 (229)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES-CHHHHHHHCSEEEEESSSCEE
T ss_pred CHHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHCCEEEEEECCEEE
T ss_conf 9998401403043443677144347876799899999999999998647968999749-999999969999999799999
Q ss_pred EECCHHHHHH
Q ss_conf 9459555999
Q 000517 424 YHGPQDHVLA 433 (1449)
Q Consensus 424 y~Gp~~~~~~ 433 (1449)
..|+.+++.+
T Consensus 208 ~~g~~~el~~ 217 (229)
T d3d31a2 208 QVGKPEEIFE 217 (229)
T ss_dssp EEECHHHHHS
T ss_pred EECCHHHHHH
T ss_conf 9869999986
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=316.89 Aligned_cols=208 Identities=25% Similarity=0.407 Sum_probs=162.8
Q ss_pred CCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCC
Q ss_conf 321224156883873999976999947999999929999999701099998850788889---95189975788668899
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~---~~~~aYV~Q~D~h~~~l 260 (1449)
..+|+|||+.+++|+.++|+||||||||||+++|+|.++|. +|+|.+||.++.+... ++.++||+|+.. +...
T Consensus 16 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~-lf~~ 91 (241)
T d2pmka1 16 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNV-LLNR 91 (241)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCC-CTTS
T ss_pred CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCCC-CCCC
T ss_conf 60374248998499999999999998999999997357888---8899999999440024655352889824465-5784
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999988029998223556720998862999997968999998631000121299999990997534532346445
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TVrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~ 340 (1449)
||+||+.|+.. +.+.+...+++..++... .+..++...+|.+|.. .
T Consensus 92 Ti~eNi~~~~~-------------------------~~~~~~~~~~~~~~~~~~--------~i~~~~~~~~t~i~~~-g 137 (241)
T d2pmka1 92 SIIDNISLANP-------------------------GMSVEKVIYAAKLAGAHD--------FISELREGYNTIVGEQ-G 137 (241)
T ss_dssp BHHHHHCTTST-------------------------TCCHHHHHHHHHHHTCHH--------HHTTSTTGGGSBCSTT-T
T ss_pred CCCCCCCCCCC-------------------------CCCHHHHHHHHHHHHHHH--------HHHHHHCCHHHHCCCC-C
T ss_conf 00035223575-------------------------543888999999975578--------8876320134432787-8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEECC
Q ss_conf 56773233159999999189949899689999999999999999999987179689999825900488522719998189
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~~G 420 (1449)
..|||||||||+||++++.+|++++|||||++||+.++.+|++.|+++.+ ++|+|+..|++ +....+|+|++|.+|
T Consensus 138 ~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~i~vl~~G 213 (241)
T d2pmka1 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRL--STVKNADRIIVMEKG 213 (241)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSG--GGGTTSSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEECCH--HHHHHCCEEEEEECC
T ss_conf 86698898987544344416513556477655598999999999999858--99899997889--999849999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 4999459555999
Q 000517 421 KIVYHGPQDHVLA 433 (1449)
Q Consensus 421 ~ivy~Gp~~~~~~ 433 (1449)
+++.+||+++++.
T Consensus 214 ~Iv~~G~~~ell~ 226 (241)
T d2pmka1 214 KIVEQGKHKELLS 226 (241)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999889999982
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=311.21 Aligned_cols=206 Identities=23% Similarity=0.311 Sum_probs=175.2
Q ss_pred CCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC-------CEEEEECCCC
Q ss_conf 333212241568838739999769999479999999299999997010999988507888899-------5189975788
Q 000517 182 AKINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP-------KTSAYISQND 254 (1449)
Q Consensus 182 ~~~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~~-------~~~aYV~Q~D 254 (1449)
....+|+|||+.+++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++....++ +.++||+|+.
T Consensus 16 ~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~ 92 (230)
T d1l2ta_ 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92 (230)
T ss_dssp EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTC
T ss_pred EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECCH
T ss_conf 2089871337788499799998899998216557506887777---6626999998576885551231255577880412
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC-CCCC
Q ss_conf 668899999999999880299982235567209988629999979689999986310001212999999909975-3453
Q 000517 255 LHIAEMTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDV-CADT 333 (1449)
Q Consensus 255 ~h~~~lTVrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~-~~dT 333 (1449)
.+++.+||+|++.|+...+..+.. +..+. ...+...|+.+||++ .+|.
T Consensus 93 ~l~~~~tv~eni~~~~~~~~~~~~-------~~~~~------------------------~~~~~~~l~~~~L~~~~~~~ 141 (230)
T d1l2ta_ 93 NLIPLLTALENVELPLIFKYRGAM-------SGEER------------------------RKRALECLKMAELEERFANH 141 (230)
T ss_dssp CCCTTSCHHHHHHHHHHTCCSSCC-------CHHHH------------------------HHHHHHHHHHTTCCGGGTTC
T ss_pred HHCCCCCHHHHHHHHHHHHCCCCC-------CHHHH------------------------HHHHHHHHHHHCHHHHHHCC
T ss_conf 417686688877578887224789-------99999------------------------99999988762423455348
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCE
Q ss_conf 23464455677323315999999918994989968999999999999999999998717968999982590048852271
Q 000517 334 MVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 334 ~VG~~~~rGLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~ 413 (1449)
.+.+ |||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.+..+.|+|+..|.+ +..+++|+
T Consensus 142 ~p~~-----LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~dr 214 (230)
T d1l2ta_ 142 KPNQ-----LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGER 214 (230)
T ss_dssp CGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTSSE
T ss_pred CHHH-----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH--HHHHHCCE
T ss_conf 8023-----8999999999875652278889946876546989999999999999984399999987888--99986998
Q ss_pred EEEEECCEEEEECCH
Q ss_conf 999818949994595
Q 000517 414 IILMAEGKIVYHGPQ 428 (1449)
Q Consensus 414 IilL~~G~ivy~Gp~ 428 (1449)
|++|.+|+++..|+.
T Consensus 215 v~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 215 IIYLKDGEVEREEKL 229 (230)
T ss_dssp EEEEETTEEEEEEEC
T ss_pred EEEEECCEEEEECCC
T ss_conf 999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=308.29 Aligned_cols=214 Identities=23% Similarity=0.281 Sum_probs=176.3
Q ss_pred EEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 89844501330431010025455653230020357737829999657999744798424099778704789999692274
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~ 928 (1449)
+..+|++.+. +..++|+|||+.+++||++||+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 Lev~nl~k~y-------------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p--~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 3 LHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCCEEECCEEEC
T ss_conf 9999789998-------------999988150668869979999989998299999999747667--8997799999933
Q ss_pred C----------------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCC
Q ss_conf 0----------------00133489970488889999899999999983049999957899999999998399421-122
Q 000517 929 Q----------------ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAI-KDS 991 (1449)
Q Consensus 929 ~----------------~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~ 991 (1449)
. ...++.+|||+|+..++|.+||.|++.+..... ...+..+.++.+.++++.++|.+. .+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGK 145 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred CCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 67752000023517679997454489983323141101021365657876--2999899999999999982995244306
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEE
Q ss_conf 24688888789999999999999961997889939999999999999999999999669989999358529999860839
Q 000517 992 LVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDEL 1071 (1449)
Q Consensus 992 ~vg~~~~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~i 1071 (1449)
.++ .||||||||++||++|+.+|++|++||||+|||+.++..|++.++++++.|.|||+++|++. ++...+|++
T Consensus 146 ~p~-----~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri 219 (258)
T d1b0ua_ 146 YPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 219 (258)
T ss_dssp CGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred CCC-----CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCEE
T ss_conf 822-----05677888989999984399878852455568878888998765541036883389948999-999869999
Q ss_pred EEEECCCEEEEECCC
Q ss_conf 899069599994488
Q 000517 1072 ILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1072 lll~~gG~~~y~G~~ 1086 (1449)
++|. +|++++.|++
T Consensus 220 ~vm~-~G~iv~~g~~ 233 (258)
T d1b0ua_ 220 IFLH-QGKIEEEGDP 233 (258)
T ss_dssp EEEE-TTEEEEEECH
T ss_pred EEEE-CCEEEEECCH
T ss_conf 9997-9999998499
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=311.91 Aligned_cols=206 Identities=25% Similarity=0.300 Sum_probs=143.8
Q ss_pred CCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC----CCCCCEEEEECCCCCCCCC
Q ss_conf 532300203577378299996579997447984240997787047899996922740----0013348997048888999
Q 000517 873 KLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ----ETFARVSGYCEQTDIHSPN 948 (1449)
Q Consensus 873 ~~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~~----~~~~~~~~yv~Q~d~~~~~ 948 (1449)
..++|+|||+.+++||++||+||||||||||+++|+|...+ .+|+|.++|.+... +..++.++|++|+...++.
T Consensus 16 ~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ 93 (254)
T d1g6ha_ 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93 (254)
T ss_dssp TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 96887121799889979999999998499999999779768--8737999999664056999998338725776424788
Q ss_pred CCHHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 989999999998304----------9999957899999999998399421122246888887899999999999999619
Q 000517 949 ITVEESVIFSAWLRL----------APEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVAN 1018 (1449)
Q Consensus 949 lTv~E~l~f~a~lr~----------~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~ 1018 (1449)
+||.|++.+++..+. ......++..+.++++++.+++.+.+|..++ .||||||||+.||++|+.+
T Consensus 94 ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~Qrv~iAraL~~~ 168 (254)
T d1g6ha_ 94 MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTN 168 (254)
T ss_dssp SBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHH-----HCCCHHHHHHHHHHHHHHC
T ss_conf 74232143013330345045665421353289999999999876196302059535-----6991888899999999759
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 978899399999999999999999999996699899993585299998608398990695999944888
Q 000517 1019 PSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1019 p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~~ 1087 (1449)
|++|+|||||+|||+.++..+++.++++++.|.||++++|+.+ ++.+.+|++++|. +|+++..|++.
T Consensus 169 P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~-~G~iv~~g~~~ 235 (254)
T d1g6ha_ 169 PKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMF-NGQIIAEGRGE 235 (254)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEE-TTEEEEEEESH
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEECHH
T ss_conf 2723243976569999999999999999978998999947699-9998699999996-99899996689
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=310.32 Aligned_cols=215 Identities=22% Similarity=0.339 Sum_probs=173.9
Q ss_pred CEEEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 07898445013304310100254556532300203577378299996579997447984240997787047899996922
Q 000517 847 LTVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYP 926 (1449)
Q Consensus 847 ~~~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~ 926 (1449)
..++.+|++.+. +..++|+|||+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~y-------------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p--~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred EEEEEEEEEEEE-------------CCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCCC
T ss_conf 079996189998-------------998888302578889979999999998599999999678888--80389842443
Q ss_pred CCCC---CC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 7400---01-334899704888899998999999999830499999578999999999983-994211222468888878
Q 000517 927 KVQE---TF-ARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETI-ELDAIKDSLVGIPGVNGL 1001 (1449)
Q Consensus 927 ~~~~---~~-~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~gL 1001 (1449)
.... .. +..++|++|+..+++.+||+|++.+.+..+. ..+..++.++++++.+ +|.+..+..++ .|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLGG-----TL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBSS-----SS
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCHHHHHHCCHH-----HC
T ss_conf 44660888887423556765545776369999998887327----8889999999999874176888758543-----38
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEE
Q ss_conf 99999999999999619978899399999999999999999999996699899993585299998608398990695999
Q 000517 1002 STEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRII 1081 (1449)
Q Consensus 1002 SgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~ 1081 (1449)
|||||||++||++|+.+|++|+|||||+|||+.+...+++.++++++.|.||++++|+.. ++.+.+|++++|. +|+++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~-~G~iv 218 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLE-TGQIV 218 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEE
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEE
T ss_conf 999999999999998299874003988679999999999999999968998999958899-9999699999998-99999
Q ss_pred EECCCC
Q ss_conf 944888
Q 000517 1082 YCGPLG 1087 (1449)
Q Consensus 1082 y~G~~~ 1087 (1449)
+.|++.
T Consensus 219 ~~g~~~ 224 (240)
T d1ji0a_ 219 LEGKAS 224 (240)
T ss_dssp EEEEHH
T ss_pred EECCHH
T ss_conf 984899
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=312.11 Aligned_cols=211 Identities=22% Similarity=0.363 Sum_probs=134.5
Q ss_pred CCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCC
Q ss_conf 321224156883873999976999947999999929999999701099998850788889---95189975788668899
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~---~~~~aYV~Q~D~h~~~l 260 (1449)
..+|+|||+.+++|+.++|+||||||||||+++|+|.++|. +|+|.+||.++.+... ++.++||+|+...+ ..
T Consensus 27 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 102 (251)
T d1jj7a_ 27 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF-GR 102 (251)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC-SS
T ss_pred CEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCCCC-CC
T ss_conf 97674438998499899999999984999999986143787---689988998531101378887765404565002-76
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999988029998223556720998862999997968999998631000121299999990997534532346445
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TVrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~ 340 (1449)
||+||+.|+..-. ++.+...++....+. .-.+.+|++..+|.+|.. .
T Consensus 103 tv~eni~~g~~~~------------------------~~~~~~~~~~~~~~~--------~~~i~~l~~g~~~~i~~~-~ 149 (251)
T d1jj7a_ 103 SLQENIAYGLTQK------------------------PTMEEITAAAVKSGA--------HSFISGLPQGYDTEVDEA-G 149 (251)
T ss_dssp BHHHHHHCSCSSC------------------------CCHHHHHHHHHHHTC--------HHHHHTSTTGGGCBCCSS-C
T ss_pred CHHHHHHHHHCCC------------------------CHHHHHHHHHHHHHH--------HHHHHHCCCCCHHHHHCC-C
T ss_conf 3465545421013------------------------027889999999989--------999985612111367516-7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEECC
Q ss_conf 56773233159999999189949899689999999999999999999987179689999825900488522719998189
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~~G 420 (1449)
..|||||||||+||++++.+|++++|||||++||+.+..+|++.|+++.+..++|+|+..|.. +....+|+|++|.+|
T Consensus 150 ~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI~vl~~G 227 (251)
T d1jj7a_ 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILFLEGG 227 (251)
T ss_dssp SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEEEEEETT
T ss_pred CCCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEEECC
T ss_conf 668954704899860445687078716757656853689999999997650698999995979--999859999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 4999459555999
Q 000517 421 KIVYHGPQDHVLA 433 (1449)
Q Consensus 421 ~ivy~Gp~~~~~~ 433 (1449)
+++.+|+++++++
T Consensus 228 ~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 228 AIREGGTHQQLME 240 (251)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999889999985
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=306.46 Aligned_cols=209 Identities=26% Similarity=0.295 Sum_probs=182.7
Q ss_pred CCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC--CCCEEEEECCCCCCCCCC
Q ss_conf 332122415688387399997699994799999992999999970109999885078888--995189975788668899
Q 000517 183 KINILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFV--PPKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 183 ~~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~--~~~~~aYV~Q~D~h~~~l 260 (1449)
+.++|+|+|+.+++|++++|+||||||||||+++|+|.+.|+ +|+|.++|.++.+.. .++.++||+|++..++.+
T Consensus 14 ~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~l 90 (238)
T d1vpla_ 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 90 (238)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCC
T ss_conf 999980625688489799999999999999999996698878---88799986724468398872186750015468786
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999988029998223556720998862999997968999998631000121299999990997534532346445
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TVrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~ 340 (1449)
||+|++.|.+.+.+.. +.+ .....+.+++.++|.+-.+..+++
T Consensus 91 tv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~--- 133 (238)
T d1vpla_ 91 QGIEYLRFVAGFYASS----------SSE------------------------IEEMVERATEIAGLGEKIKDRVST--- 133 (238)
T ss_dssp BHHHHHHHHHHHHCCC----------HHH------------------------HHHHHHHHHHHHCCGGGGGSBGGG---
T ss_pred CHHHHHHHHHHHCCCC----------HHH------------------------HHHHHHHHHHHCCCHHHHHHHHHH---
T ss_conf 6778889899861799----------899------------------------999999999867978888504533---
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEECC
Q ss_conf 56773233159999999189949899689999999999999999999987179689999825900488522719998189
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~~G 420 (1449)
+|||||||+.+|++++++|++++|||||+|||+.++.+|++.+++++. .++|++++.|. ..++..++|+|++|.+|
T Consensus 134 --lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~~tH~-l~~~~~~~drv~vl~~G 209 (238)
T d1vpla_ 134 --YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHN-MLEVEFLCDRIALIHNG 209 (238)
T ss_dssp --CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECC-HHHHTTTCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHHHHHHCCEEEEEECC
T ss_conf --799898999999998659998873379889798999999999999996-59989999598-99999969999999899
Q ss_pred EEEEECCHHHHHHHH
Q ss_conf 499945955599998
Q 000517 421 KIVYHGPQDHVLAFF 435 (1449)
Q Consensus 421 ~ivy~Gp~~~~~~~F 435 (1449)
++++.|+.+++.+.+
T Consensus 210 ~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 210 TIVETGTVEELKERY 224 (238)
T ss_dssp EEEEEEEHHHHHHHT
T ss_pred EEEEECCHHHHHHCC
T ss_conf 999992899998652
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=310.89 Aligned_cols=196 Identities=29% Similarity=0.431 Sum_probs=96.1
Q ss_pred CEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCC
Q ss_conf 32300203577378299996579997447984240997787047899996922740---001334899704888899998
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNIT 950 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~~---~~~~~~~~yv~Q~d~~~~~lT 950 (1449)
..+|+|||+.+++|+.+||+|+||||||||+++|+|...+ .+|+|.++|.+... ..+++.++||+|++.++ ..|
T Consensus 31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~T 107 (255)
T d2hyda1 31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SDT 107 (255)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SSB
T ss_pred CCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCCEECCCCCHHHHHHEEEEEECCCCCC-CCC
T ss_conf 7606443899839989999889998099999999712786--3000153998753078888634145651015689-987
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 999999999830499999578999999999983994-------2112224688888789999999999999961997889
Q 000517 951 VEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELD-------AIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIF 1023 (1449)
Q Consensus 951 v~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~il~ 1023 (1449)
|+|++.|.. +..+. +.++++++..++. +-.|+.+|..+. .||||||||++|||+|+.+|+|++
T Consensus 108 i~eNi~~g~-----~~~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~-~LSgGq~QRi~iARal~~~p~ili 177 (255)
T d2hyda1 108 VKENILLGR-----PTATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILI 177 (255)
T ss_dssp HHHHHGGGC-----SSCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGT-TSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHHHCCC-----CCCCH----HHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCC-CCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999985158-----67999----99999999969799997362420103338889-849999999999999855998999
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 939999999999999999999999669989999358529999860839899069599994488
Q 000517 1024 MDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1024 lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~ 1086 (1449)
||||||+||+.+...|++.++++. .++|+|+++|+++ ....+|++++|. +|+++..|+.
T Consensus 178 lDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l~-~G~iv~~G~~ 236 (255)
T d2hyda1 178 LDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIE-NGHIVETGTH 236 (255)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEE-TTEEEEEECH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEE-CCEEEEECCH
T ss_conf 837654479779999999999875-3888999968999--998599999998-9999998899
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=305.83 Aligned_cols=209 Identities=24% Similarity=0.403 Sum_probs=123.9
Q ss_pred CCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCC
Q ss_conf 321224156883873999976999947999999929999999701099998850788889---95189975788668899
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~---~~~~aYV~Q~D~h~~~l 260 (1449)
.++|+|||+.+++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|+.. +...
T Consensus 28 ~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-l~~~ 103 (253)
T d3b60a1 28 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVH-LFND 103 (253)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCC-CCSS
T ss_pred CCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECCC-CCCC
T ss_conf 76353328998599999999999985999999986216888---4689878801211106654206879950254-4786
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999988029998223556720998862999997968999998631000121299999990997534532346445
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TVrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~ 340 (1449)
|+++++.|+... +.+.++..+++..++.. +. +. .|+...||.+|+. .
T Consensus 104 ti~~n~~~~~~~------------------------~~~~~~i~~a~~~~~l~-----~~-i~--~l~~gl~t~~~~~-~ 150 (253)
T d3b60a1 104 TVANNIAYARTE------------------------EYSREQIEEAARMAYAM-----DF-IN--KMDNGLDTIIGEN-G 150 (253)
T ss_dssp BHHHHHHTTTTS------------------------CCCHHHHHHHHHTTTCH-----HH-HH--HSTTGGGSBCCTT-S
T ss_pred CHHHHHHHCCCC------------------------CCCHHHHHHHHHHHHHH-----HH-HH--HCCCCCHHHHCCC-C
T ss_conf 202433205722------------------------08999999999998179-----99-97--3554410143488-8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEECC
Q ss_conf 56773233159999999189949899689999999999999999999987179689999825900488522719998189
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~~G 420 (1449)
..|||||||||+||++++.+|++++||||||+||+.++..|++.|+++.+ ++|+|+..|.. +....+|+|++|.+|
T Consensus 151 ~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~v~vl~~G 226 (253)
T d3b60a1 151 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEQADEIVVVEDG 226 (253)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCG--GGTTTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCH--HHHHHCCEEEEEECC
T ss_conf 98499999999999999549988995164445898899999999987522--78899998879--999859999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 4999459555999
Q 000517 421 KIVYHGPQDHVLA 433 (1449)
Q Consensus 421 ~ivy~Gp~~~~~~ 433 (1449)
+++.+|+++++++
T Consensus 227 ~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 227 IIVERGTHSELLA 239 (253)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999889999986
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=306.92 Aligned_cols=193 Identities=23% Similarity=0.412 Sum_probs=98.5
Q ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 203577378299996579997447984240997787047899996922740-0013348997048888999989999999
Q 000517 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ-ETFARVSGYCEQTDIHSPNITVEESVIF 957 (1449)
Q Consensus 879 ~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~~-~~~~~~~~yv~Q~d~~~~~lTv~E~l~f 957 (1449)
|||+.+. +|+++|+||||||||||+++|+|...+ .+|+|.+||.+... ...+|.+|||+|++.++|++||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCC--CCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-979999979998099999999739998--9628999999988699899285225231443522015576665
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 99830499999578999999999983994211222468888878999999999999996199788993999999999999
Q 000517 958 SAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 1037 (1449)
Q Consensus 958 ~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~ 1037 (1449)
+ ++ ..+..+++++++++++.++|.+.++..+. .||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~--l~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 G--LR---NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp T--CT---TSCHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred H--HC---CCCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 3--23---36778899999999986383756657944-----48999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 999999999966-9989999358529999860839899069599994488
Q 000517 1038 IVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPL 1086 (1449)
Q Consensus 1038 ~i~~~l~~l~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~ 1086 (1449)
.+++.++++.+. |.|||+++|++. ++...+|++++|. .|+++..|++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~-~G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVML-NGRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEECH
T ss_conf 9999999998743976999818999-9999699999998-9999999069
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=305.37 Aligned_cols=205 Identities=22% Similarity=0.357 Sum_probs=172.7
Q ss_pred CCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC----CCEEEEECCCCCCCCC
Q ss_conf 321224156883873999976999947999999929999999701099998850788889----9518997578866889
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----PKTSAYISQNDLHIAE 259 (1449)
Q Consensus 184 ~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~----~~~~aYV~Q~D~h~~~ 259 (1449)
.++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....+ +.-++|++|+...++.
T Consensus 19 ~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ 95 (240)
T d1ji0a_ 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88883025788899799999999985999999996788888---038984244344660888887423556765545776
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH-CCCCCCCCCCCCC
Q ss_conf 999999999988029998223556720998862999997968999998631000121299999990-9975345323464
Q 000517 260 MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKIL-GLDVCADTMVGNA 338 (1449)
Q Consensus 260 lTVrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~L-GL~~~~dT~VG~~ 338 (1449)
+||+||+.+.+....... .. ....+.++..+ +|.+.+|..+++
T Consensus 96 ltv~en~~~~~~~~~~~~---------~~--------------------------~~~~~~~~~~~~~l~~~~~~~~~~- 139 (240)
T d1ji0a_ 96 LTVYENLMMGAYNRKDKE---------GI--------------------------KRDLEWIFSLFPRLKERLKQLGGT- 139 (240)
T ss_dssp SBHHHHHHGGGTTCCCSS---------HH--------------------------HHHHHHHHHHCHHHHTTTTSBSSS-
T ss_pred CCHHHHHHHHHHHCCCHH---------HH--------------------------HHHHHHHHHHHHCHHHHHHCCHHH-
T ss_conf 369999998887327888---------99--------------------------999999998741768887585433-
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEE
Q ss_conf 45567732331599999991899498996899999999999999999999871796899998259004885227199981
Q 000517 339 MRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMA 418 (1449)
Q Consensus 339 ~~rGLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~ 418 (1449)
|||||||||.||++++.+|++++|||||+|||+.++.+|++.|+++.+ .|.|++++. |...++.+++|+|++|.
T Consensus 140 ----LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~~t-H~l~~~~~~~drv~vl~ 213 (240)
T d1ji0a_ 140 ----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVE-QNALGALKVAHYGYVLE 213 (240)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEE-SCHHHHHHHCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEE-CCHHHHHHHCCEEEEEE
T ss_conf ----899999999999999829987400398867999999999999999996-899899995-88999999699999998
Q ss_pred CCEEEEECCHHHHHH
Q ss_conf 894999459555999
Q 000517 419 EGKIVYHGPQDHVLA 433 (1449)
Q Consensus 419 ~G~ivy~Gp~~~~~~ 433 (1449)
+|++++.|+.+++.+
T Consensus 214 ~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 214 TGQIVLEGKASELLD 228 (240)
T ss_dssp TTEEEEEEEHHHHHT
T ss_pred CCEEEEECCHHHHHC
T ss_conf 999999848999842
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=301.84 Aligned_cols=211 Identities=26% Similarity=0.448 Sum_probs=172.6
Q ss_pred EEEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 78984450133043101002545565323002035773782999965799974479842409977870478999969227
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~ 927 (1449)
.++|+|++|+.+ .....+|+|||+.+++|+.+||+|+||||||||+++|.|...+ .+|+|.+||.+.
T Consensus 1 eI~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred CEEEEEEEEEEC-----------CCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC--CCCEEEECCEEE
T ss_conf 929999999908-----------9996037424899849999999999999899999999735788--888999999994
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCCCCC
Q ss_conf 40---0013348997048888999989999999998304999995789999999999839-------9421122246888
Q 000517 928 VQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-------LDAIKDSLVGIPG 997 (1449)
Q Consensus 928 ~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~ 997 (1449)
.. ..+++.++||+|+..+ +..|++|++.|. .+..+.+. +++..+..+ +..-.++.+|..+
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~l-f~~Ti~eNi~~~-----~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVL-LNRSIIDNISLA-----NPGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQG 137 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCC-TTSBHHHHHCTT-----STTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTT
T ss_pred CCCCHHHHHCEEEEEECCCCC-CCCCCCCCCCCC-----CCCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf 400246553528898244655-784000352235-----75543888----99999997557888763201344327878
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECC
Q ss_conf 88789999999999999961997889939999999999999999999999669989999358529999860839899069
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl~~g 1077 (1449)
. .||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++. .|+|+|+++|+++ ....+|++++|. +
T Consensus 138 ~-~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~ 212 (241)
T d2pmka1 138 A-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVME-K 212 (241)
T ss_dssp T-CCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEE-T
T ss_pred C-CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEE-C
T ss_conf 8-669889898754434441651355647765559899999999999985-8998999978899--998499999998-9
Q ss_pred CEEEEECCC
Q ss_conf 599994488
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~~y~G~~ 1086 (1449)
|+++..|+.
T Consensus 213 G~Iv~~G~~ 221 (241)
T d2pmka1 213 GKIVEQGKH 221 (241)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=309.61 Aligned_cols=208 Identities=24% Similarity=0.377 Sum_probs=125.5
Q ss_pred CCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCC
Q ss_conf 21224156883873999976999947999999929999999701099998850788889---951899757886688999
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 185 ~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~---~~~~aYV~Q~D~h~~~lT 261 (1449)
++|+|||+.++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++..++ .|
T Consensus 16 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~t 91 (242)
T d1mv5a_ 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GT 91 (242)
T ss_dssp CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EE
T ss_pred CEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCCCCC-CC
T ss_conf 4142258998599999999999997999999999960989---8779889988442467888743679756654578-53
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999999880299982235567209988629999979689999986310001212999999909975345323464455
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 VrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~r 341 (1449)
|+||+.++..-. ...+...++....+... ....+++..+|.+|+. ..
T Consensus 92 i~eNi~~~~~~~------------------------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~-g~ 138 (242)
T d1mv5a_ 92 IRENLTYGLEGD------------------------YTDEDLWQVLDLAFARS--------FVENMPDQLNTEVGER-GV 138 (242)
T ss_dssp HHHHTTSCTTSC------------------------SCHHHHHHHHHHHTCTT--------TTTSSTTGGGCEESTT-SB
T ss_pred HHHHEECCCCCC------------------------CCHHHHHHHHHHHHHHH--------HHCCCCCCCCCCCCCC-CC
T ss_conf 454301244555------------------------42356778999997555--------4203742101523687-89
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEECCE
Q ss_conf 67732331599999991899498996899999999999999999999871796899998259004885227199981894
Q 000517 342 GISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGK 421 (1449)
Q Consensus 342 GLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~~G~ 421 (1449)
.|||||||||+||+|++.+|++++|||||++||+.++.+|++.|+++.+ ++|+|+..|.+ +....+|+|++|.+|+
T Consensus 139 ~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~i~vl~~G~ 214 (242)
T d1mv5a_ 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRL--STIVDADKIYFIEKGQ 214 (242)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCSH--HHHHHCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCH--HHHHHCCEEEEEECCE
T ss_conf 8799999999999998529989996588655698899999887888717--99899997879--9998499999998999
Q ss_pred EEEECCHHHHHH
Q ss_conf 999459555999
Q 000517 422 IVYHGPQDHVLA 433 (1449)
Q Consensus 422 ivy~Gp~~~~~~ 433 (1449)
++++|+++++++
T Consensus 215 iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 215 ITGSGKHNELVA 226 (242)
T ss_dssp ECCCSCHHHHHH
T ss_pred EEEECCHHHHHH
T ss_conf 999999999986
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=304.02 Aligned_cols=210 Identities=24% Similarity=0.405 Sum_probs=179.5
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 4156883873999976999947999999929999999701099998850788889-951899757886688999999999
Q 000517 189 HVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP-PKTSAYISQNDLHIAEMTVRETVD 267 (1449)
Q Consensus 189 ~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~-~~~~aYV~Q~D~h~~~lTVrEtL~ 267 (1449)
|||+.+. ++.++|+|||||||||||++|+|.++|+ +|+|.+||.++....+ ++.++||+|++.++|.+||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 9999749-9799999799980999999997399989---62899999998869989928522523144352201557666
Q ss_pred HHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99880299982235567209988629999979689999986310001212999999909975345323464455677323
Q 000517 268 FSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQ 347 (1449)
Q Consensus 268 Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rGLSGGQ 347 (1449)
|+.+ +. .+.++ +..++.+++.+||++..|..+.. |||||
T Consensus 93 ~~l~--~~----------~~~~~------------------------~~~v~~~l~~~gl~~~~~~~~~~-----LSGG~ 131 (240)
T d2onka1 93 YGLR--NV----------ERVER------------------------DRRVREMAEKLGIAHLLDRKPAR-----LSGGE 131 (240)
T ss_dssp TTCT--TS----------CHHHH------------------------HHHHHHHHHTTTCTTTTTCCGGG-----SCHHH
T ss_pred HHHC--CC----------CHHHH------------------------HHHHHHHHHHCCCHHHHHCCHHH-----CCHHH
T ss_conf 5323--36----------77889------------------------99999999863837566579444-----89999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEECCEEEEECC
Q ss_conf 31599999991899498996899999999999999999999871796899998259004885227199981894999459
Q 000517 348 KKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGP 427 (1449)
Q Consensus 348 KKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~~G~ivy~Gp 427 (1449)
||||+||++++.+|++++|||||+|||+.++.++++.++++.+..+.|+|++.|. ..++..++|+|++|.+|+++..|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd-~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD-LIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC-HHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 8999998777516770675286555887999999999999987439769998189-999999699999998999999906
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 55599998855998899999245898
Q 000517 428 QDHVLAFFEDCGFRCPERKGVSDFLQ 453 (1449)
Q Consensus 428 ~~~~~~~Fe~lGf~cp~~~~~adfl~ 453 (1449)
.+++.+ ++...++.|+.
T Consensus 211 ~~el~~---------~~~~~v~~fl~ 227 (240)
T d2onka1 211 LKELFS---------AKNGEVAEFLS 227 (240)
T ss_dssp HHHHHH---------SCCSSHHHHGG
T ss_pred HHHHHC---------CCCHHHHHHHC
T ss_conf 999832---------99889999857
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=310.60 Aligned_cols=211 Identities=26% Similarity=0.435 Sum_probs=171.4
Q ss_pred EEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 89844501330431010025455653230020357737829999657999744798424099778704789999692274
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~ 928 (1449)
++++|++|+++ +.+.+|+|||+.++||+++||+|+||||||||+++|+|...+ .+|+|.+||.+..
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCC--CCCEEEECCEEEC
T ss_conf 79998899879------------998414225899859999999999999799999999996098--9877988998844
Q ss_pred C---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCCCCCC
Q ss_conf 0---0013348997048888999989999999998304999995789999999999839-------94211222468888
Q 000517 929 Q---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIE-------LDAIKDSLVGIPGV 998 (1449)
Q Consensus 929 ~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~-------L~~~~~~~vg~~~~ 998 (1449)
. ..+++.++||+|++.+++. |++|++.+.. ....+.+ .+++.++..+ +.+..++.+|..+.
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 138 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGL----EGDYTDE----DLWQVLDLAFARSFVENMPDQLNTEVGERGV 138 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCT----TSCSCHH----HHHHHHHHHTCTTTTTSSTTGGGCEESTTSB
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCC----CCCCCHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 24678887436797566545785-3454301244----5554235----6778999997555420374210152368789
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCC
Q ss_conf 87899999999999999619978899399999999999999999999996699899993585299998608398990695
Q 000517 999 NGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGG 1078 (1449)
Q Consensus 999 ~gLSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG 1078 (1449)
.||||||||++|||+|+.+|+||+||||||+||+.++..+++.+++++ .|+|+|+++|+++ ....+|++++|. +|
T Consensus 139 -~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~G 213 (242)
T d1mv5a_ 139 -KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIE-KG 213 (242)
T ss_dssp -CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEE-TT
T ss_pred -CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEE-CC
T ss_conf -879999999999999852998999658865569889999988788871-7998999978799--998499999998-99
Q ss_pred EEEEECCCC
Q ss_conf 999944888
Q 000517 1079 RIIYCGPLG 1087 (1449)
Q Consensus 1079 ~~~y~G~~~ 1087 (1449)
+++..|+..
T Consensus 214 ~iv~~G~~~ 222 (242)
T d1mv5a_ 214 QITGSGKHN 222 (242)
T ss_dssp EECCCSCHH
T ss_pred EEEEECCHH
T ss_conf 999999999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.6e-45 Score=297.52 Aligned_cols=206 Identities=23% Similarity=0.330 Sum_probs=173.6
Q ss_pred CCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC----------------CCEE
Q ss_conf 321224156883873999976999947999999929999999701099998850788889----------------9518
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP----------------PKTS 247 (1449)
Q Consensus 184 ~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~----------------~~~~ 247 (1449)
.++|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.++|.+++...+ ++.+
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCE
T ss_conf 99881506688699799999899982999999997476678---997799999933677520000235176799974544
Q ss_pred EEECCCCCCCCCCCHHHHHHHHH-HCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 99757886688999999999998-80299982235567209988629999979689999986310001212999999909
Q 000517 248 AYISQNDLHIAEMTVRETVDFSA-RCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILG 326 (1449)
Q Consensus 248 aYV~Q~D~h~~~lTVrEtL~Faa-~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LG 326 (1449)
+||+|+...++.+||.|++.|+. +..+.. +.+. ...+..+++.+|
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~~----------~~~~------------------------~~~~~~~l~~~~ 137 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------KHDA------------------------RERALKYLAKVG 137 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------HHHH------------------------HHHHHHHHHHTT
T ss_pred EEEEECHHHCCCHHCCHHHHHHHHHHCCCC----------HHHH------------------------HHHHHHHHHHCC
T ss_conf 899833231411010213656578762999----------8999------------------------999999999829
Q ss_pred CCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCH
Q ss_conf 975-3453234644556773233159999999189949899689999999999999999999987179689999825900
Q 000517 327 LDV-CADTMVGNAMRRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAP 405 (1449)
Q Consensus 327 L~~-~~dT~VG~~~~rGLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ 405 (1449)
|.. ..|...+ .|||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.+ .+.|+++ +.|...
T Consensus 138 l~~~~~~~~p~-----~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~-vtHdl~ 210 (258)
T d1b0ua_ 138 IDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVV-VTHEMG 210 (258)
T ss_dssp CCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEE-ECSCHH
T ss_pred CCHHHHCCCCC-----CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCCCEEE-EECCHH
T ss_conf 95244306822-----0567788898999998439987885245556887888899876554103-6883389-948999
Q ss_pred HHHHHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 4885227199981894999459555999
Q 000517 406 ETFDLFDDIILMAEGKIVYHGPQDHVLA 433 (1449)
Q Consensus 406 ei~~lFD~IilL~~G~ivy~Gp~~~~~~ 433 (1449)
++..++|+|++|.+|++++.|+.+++..
T Consensus 211 ~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 211 FARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9998699999997999999849999983
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=305.01 Aligned_cols=216 Identities=24% Similarity=0.354 Sum_probs=173.7
Q ss_pred EEEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 78984450133043101002545565323002035773782999965799974479842409977870478999969227
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~ 927 (1449)
.+.|+|++|+.+.. .+..+|+|||+.+++||++||+|+||||||||+++|.|...+ .+|+|.+||.+.
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p--~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP--TGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred EEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 69999989988999----------999767443899849989999999998499999998614378--768998899853
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 40---001334899704888899998999999999830499999578999-----9999999839942112224688888
Q 000517 928 VQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAE-----FVNEVLETIELDAIKDSLVGIPGVN 999 (1449)
Q Consensus 928 ~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~-----~v~~~l~~l~L~~~~~~~vg~~~~~ 999 (1449)
.. ..+++.++||+|+..++ ..||+|++.|.. ..........+ ...+.+ ..|.+-.++.++..+.
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~g~----~~~~~~~~~~~~~~~~~~~~~i--~~l~~g~~~~i~~~~~- 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVF-GRSLQENIAYGL----TQKPTMEEITAAAVKSGAHSFI--SGLPQGYDTEVDEAGS- 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCC-SSBHHHHHHCSC----SSCCCHHHHHHHHHHHTCHHHH--HTSTTGGGCBCCSSCS-
T ss_pred CHHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHH--HHCCCCCHHHHHCCCC-
T ss_conf 1101378887765404565002-763465545421----0130278899999999899999--8561211136751676-
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCC
Q ss_conf 78999999999999996199788993999999999999999999999966-99899993585299998608398990695
Q 000517 1000 GLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNT-GRTIVCTIHQPSIDIFEAFDELILLKTGG 1078 (1449)
Q Consensus 1000 gLSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~Hqps~~i~~~fD~illl~~gG 1078 (1449)
.||||||||++|||+|+.+|+|++||||||+||+.+...+++.++++.+. |+|+|+++|+++ ..+.+|++++|. +|
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~-~G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLE-GG 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEE-TT
T ss_pred CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEEE-CC
T ss_conf 689547048998604456870787167576568536899999999976506989999959799--998599999998-99
Q ss_pred EEEEECCC
Q ss_conf 99994488
Q 000517 1079 RIIYCGPL 1086 (1449)
Q Consensus 1079 ~~~y~G~~ 1086 (1449)
+++..|++
T Consensus 228 ~iv~~Gt~ 235 (251)
T d1jj7a_ 228 AIREGGTH 235 (251)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
T ss_conf 99998899
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=304.10 Aligned_cols=219 Identities=25% Similarity=0.363 Sum_probs=180.2
Q ss_pred CCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCC
Q ss_conf 3212241568838739999769999479999999299999997010999988507888899----518997578866889
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP----KTSAYISQNDLHIAE 259 (1449)
Q Consensus 184 ~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~~----~~~aYV~Q~D~h~~~ 259 (1449)
.++|+|||+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....++ +-++|++|+...++.
T Consensus 17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ 93 (254)
T d1g6ha_ 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93 (254)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 68871217998899799999999984999999997797688---737999999664056999998338725776424788
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999998802999822355672099886299999796899999863100012129999999099753453234644
Q 000517 260 MTVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAM 339 (1449)
Q Consensus 260 lTVrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~ 339 (1449)
+||+||+.+++..++....... - .....++ + +. .....+.+++.+++.+.+|..+++
T Consensus 94 ltv~enl~~~~~~~~~~~~~~~-------~-~~~~~~~-~-~~-----------~~~~~~~~l~~~~l~~~~~~~~~~-- 150 (254)
T d1g6ha_ 94 MTVLENLLIGEICPGESPLNSL-------F-YKKWIPK-E-EE-----------MVEKAFKILEFLKLSHLYDRKAGE-- 150 (254)
T ss_dssp SBHHHHHHGGGTSTTSCHHHHH-------H-HCSSCCC-C-HH-----------HHHHHHHHHHHTTCGGGTTSBGGG--
T ss_pred CEEEEEEEEHHHHCCCCCHHHH-------H-HHCCCCC-H-HH-----------HHHHHHHHHHHCCCCHHCCCCHHH--
T ss_conf 7423214301333034504566-------5-4213532-8-99-----------999999998761963020595356--
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEEC
Q ss_conf 55677323315999999918994989968999999999999999999998717968999982590048852271999818
Q 000517 340 RRGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419 (1449)
Q Consensus 340 ~rGLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~~ 419 (1449)
|||||||||.||++++.+|++++|||||+|||+.++.+|++.|+++.. .|.|++++ .|...++.+++|+|++|.+
T Consensus 151 ---LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~v-sHdl~~~~~~~Drv~vm~~ 225 (254)
T d1g6ha_ 151 ---LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLII-EHRLDIVLNYIDHLYVMFN 225 (254)
T ss_dssp ---SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEE-CSCCSTTGGGCSEEEEEET
T ss_pred ---CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEE-ECCHHHHHHHCCEEEEEEC
T ss_conf ---991888899999999759272324397656999999999999999997-89989999-4769999986999999969
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 94999459555999
Q 000517 420 GKIVYHGPQDHVLA 433 (1449)
Q Consensus 420 G~ivy~Gp~~~~~~ 433 (1449)
|+++..|+.+++.+
T Consensus 226 G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 226 GQIIAEGRGEEEIK 239 (254)
T ss_dssp TEEEEEEESHHHHH
T ss_pred CEEEEEECHHHHHH
T ss_conf 98999966899865
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=5.6e-45 Score=297.64 Aligned_cols=208 Identities=25% Similarity=0.399 Sum_probs=173.4
Q ss_pred CCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCC
Q ss_conf 321224156883873999976999947999999929999999701099998850788889---95189975788668899
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVP---PKTSAYISQNDLHIAEM 260 (1449)
Q Consensus 184 ~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~---~~~~aYV~Q~D~h~~~l 260 (1449)
.++|+|||+.+++|+.++|+||||||||||+++|+|.++|. +|+|.+||.++.+... ++.++||+|++.+ ...
T Consensus 31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~l-f~~ 106 (255)
T d2hyda1 31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL-FSD 106 (255)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCC-CSS
T ss_pred CCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCCCC-CCC
T ss_conf 76064438998399899998899980999999997127863---00015399875307888863414565101568-998
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999988029998223556720998862999997968999998631000121299999990997534532346445
Q 000517 261 TVRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMR 340 (1449)
Q Consensus 261 TVrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~ 340 (1449)
||+||+.|+.. +.+.++..+++...+.. + .+..|+...||.+|+. .
T Consensus 107 Ti~eNi~~g~~-------------------------~~~~~~~~~al~~~~l~-----~---~i~~lp~gl~t~i~~~-g 152 (255)
T d2hyda1 107 TVKENILLGRP-------------------------TATDEEVVEAAKMANAH-----D---FIMNLPQGYDTEVGER-G 152 (255)
T ss_dssp BHHHHHGGGCS-------------------------SCCHHHHHHHHHHTTCH-----H---HHHTSTTGGGCBCCGG-G
T ss_pred CHHHHHHCCCC-------------------------CCCHHHHHHHHHHHCCH-----H---HHHHCCCCCCCHHCCC-C
T ss_conf 79999851586-------------------------79999999999996979-----9---9973624201033388-8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEECC
Q ss_conf 56773233159999999189949899689999999999999999999987179689999825900488522719998189
Q 000517 341 RGISGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEG 420 (1449)
Q Consensus 341 rGLSGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~~G 420 (1449)
..||||||||++||++++.+|++++|||||++||+.++..|++.|+++.+ ++|+|+..|.+ +....+|+|++|.+|
T Consensus 153 ~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~--~~~~~~D~ii~l~~G 228 (255)
T d2hyda1 153 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRL--STITHADKIVVIENG 228 (255)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSG--GGTTTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEECCH--HHHHHCCEEEEEECC
T ss_conf 98499999999999998559989998376544797799999999998753--88899996899--999859999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 4999459555999
Q 000517 421 KIVYHGPQDHVLA 433 (1449)
Q Consensus 421 ~ivy~Gp~~~~~~ 433 (1449)
+++..|+++++++
T Consensus 229 ~iv~~G~~~eLl~ 241 (255)
T d2hyda1 229 HIVETGTHRELIA 241 (255)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999889999986
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.2e-45 Score=298.56 Aligned_cols=212 Identities=25% Similarity=0.358 Sum_probs=173.4
Q ss_pred EEEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 78984450133043101002545565323002035773782999965799974479842409977870478999969227
Q 000517 848 TVAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPK 927 (1449)
Q Consensus 848 ~~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~ 927 (1449)
.++|+|++|+.+. .+..+|+|||+.+++||.+||+|+||||||||+++|+|...+ .+|+|.+||.+.
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEET
T ss_pred EEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCCCC
T ss_conf 7999988999299-----------997635332899859999999999998599999998621688--846898788012
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCC
Q ss_conf 40---0013348997048888999989999999998304999995789999999999839942-------1122246888
Q 000517 928 VQ---ETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDA-------IKDSLVGIPG 997 (1449)
Q Consensus 928 ~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~ 997 (1449)
.. ..+++.++||+|+..+ ...|+++++.+.. +...+. +.++++++..++.+ -.++.++..+
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l-~~~ti~~n~~~~~----~~~~~~----~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~ 150 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHL-FNDTVANNIAYAR----TEEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGENG 150 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCC-CSSBHHHHHHTTT----TSCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTS
T ss_pred CHHHHHHHHHEEEEEEECCCC-CCCCHHHHHHHCC----CCCCCH----HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf 111066542068799502544-7862024332057----220899----9999999998179999735544101434888
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECC
Q ss_conf 88789999999999999961997889939999999999999999999999669989999358529999860839899069
Q 000517 998 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTG 1077 (1449)
Q Consensus 998 ~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl~~g 1077 (1449)
. .||||||||++|||+|+.+|+||+||||||+||+.+...|++.|+++. .++|+|+++|+++ ....+|++++|. +
T Consensus 151 ~-~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v~vl~-~ 225 (253)
T d3b60a1 151 V-LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEIVVVE-D 225 (253)
T ss_dssp C-SSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEEEEEE-T
T ss_pred C-CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEE-C
T ss_conf 9-849999999999999954998899516444589889999999998752-2788999988799--998599999998-9
Q ss_pred CEEEEECCC
Q ss_conf 599994488
Q 000517 1078 GRIIYCGPL 1086 (1449)
Q Consensus 1078 G~~~y~G~~ 1086 (1449)
|+++..|++
T Consensus 226 G~Iv~~G~~ 234 (253)
T d3b60a1 226 GIIVERGTH 234 (253)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-43 Score=288.97 Aligned_cols=198 Identities=19% Similarity=0.315 Sum_probs=152.1
Q ss_pred CCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 32122415688387399997699994799999992999999970109999885078888995189975788668899999
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVR 263 (1449)
Q Consensus 184 ~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~~~~~aYV~Q~D~h~~~lTVr 263 (1449)
.++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++| .++||+|+...++ .||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCCCCC-CEEE
T ss_conf 76773759998599999999899982999999995797478---82899999----------9999816430267-6032
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99999988029998223556720998862999997968999998631000121299999990997534532346445567
Q 000517 264 ETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGI 343 (1449)
Q Consensus 264 EtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rGL 343 (1449)
||+.|+.... ...+.+++..+.. ...+..++...+|.+|.. ...|
T Consensus 115 eni~~~~~~~--------------------------~~~~~~~~~~~~~--------~~~i~~l~~~~~~~~~~~-~~~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYD--------------------------EYRYKSVVKACQL--------QQDITKFAEQDNTVLGEG-GVTL 159 (281)
T ss_dssp HHHTTTSCCC--------------------------HHHHHHHHHHTTC--------HHHHTTSTTGGGCEECTT-CTTS
T ss_pred CCCCCCCCCC--------------------------CHHHHHHHHHHHH--------HHHHHHCHHHHHHHHHHH-CCCC
T ss_conf 1420333456--------------------------0579999999776--------999984612332355554-2377
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEECCEEE
Q ss_conf 73233159999999189949899689999999999999999999987179689999825900488522719998189499
Q 000517 344 SGGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIV 423 (1449)
Q Consensus 344 SGGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~~G~iv 423 (1449)
||||||||++|++++.+|++++|||||++||+.+..+|++.+.... ..++|+|+..|+ .+....+|+|++|.+|+++
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~tvi~itH~--~~~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRILVTSK--MEHLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSEEEEECSC--HHHHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECH--HHHHHHCCEEEEEECCEEE
T ss_conf 9999999999999986963513338554489899999999999886-289999999252--8999859999999899999
Q ss_pred EECCHHHHHH
Q ss_conf 9459555999
Q 000517 424 YHGPQDHVLA 433 (1449)
Q Consensus 424 y~Gp~~~~~~ 433 (1449)
++|++++++.
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHC
T ss_conf 9878999960
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.4e-42 Score=279.82 Aligned_cols=195 Identities=25% Similarity=0.393 Sum_probs=164.3
Q ss_pred EEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCH
Q ss_conf 2300203577378299996579997447984240997787047899996922740---0013348997048888999989
Q 000517 875 RLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQ---ETFARVSGYCEQTDIHSPNITV 951 (1449)
Q Consensus 875 ~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~~---~~~~~~~~yv~Q~d~~~~~lTv 951 (1449)
..|++||+.+++||++||+|+||||||||+++|+|.. + .+|+|.++|.+... ...+...+|++|+.......++
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~--~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-S--GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-C--CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-C--CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCH
T ss_conf 1555888899489899999899980999999994887-9--955999999999869989998640245121357744209
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEEE
Q ss_conf 999999998304999995789999999999839942112224688888789999999999999961-------9978899
Q 000517 952 EESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVA-------NPSIIFM 1024 (1449)
Q Consensus 952 ~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~-------~p~il~l 1024 (1449)
++.+.+... .+.+.+.++++++.++|.+..+..+. .||||||||++||++|+. +|+||+|
T Consensus 90 ~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~al~~~~p~~~p~p~llll 156 (231)
T d1l7vc_ 90 WHYLTLHQH--------DKTRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 156 (231)
T ss_dssp HHHHHHHCS--------CTTCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHCCC--------HHHHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 887641001--------46689999999986598767676844-----56998899999999998517133899889997
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 399999999999999999999996699899993585299998608398990695999944888
Q 000517 1025 DEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1025 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~~ 1087 (1449)
||||+|||+.++..+++.++++++.|.|||+++|+++ ++...+|++++|. +|++++.|++.
T Consensus 157 DEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~~ 217 (231)
T d1l7vc_ 157 DEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRRE 217 (231)
T ss_dssp SSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCHH
T ss_conf 1877778989999999999999867999999967799-9999799999997-99899988999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-42 Score=282.78 Aligned_cols=191 Identities=23% Similarity=0.384 Sum_probs=152.8
Q ss_pred CEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 32300203577378299996579997447984240997787047899996922740001334899704888899998999
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEE 953 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E 953 (1449)
.++|+|||+.+++||++||+||||||||||+++|+|...+ .+|+|.++|. ++||+|+..+++ .||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSGR----------VSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEECCSC----------EEEECSSCCCCS-EEHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCE----------EEEEECCCCCCC-CEEEC
T ss_conf 7677375999859999999989998299999999579747--8828999999----------999816430267-60321
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHH---HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 9999998304999995789999999---9998399421122246888887899999999999999619978899399999
Q 000517 954 SVIFSAWLRLAPEINSKTKAEFVNE---VLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTG 1030 (1449)
Q Consensus 954 ~l~f~a~lr~~~~~~~~~~~~~v~~---~l~~l~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTsg 1030 (1449)
++.|.. ...........+. ......+.+..++.++..+. .||||||||++|||+|+.+|+||+|||||++
T Consensus 116 ni~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~-~LSgGqkQRv~lARaL~~~p~illLDEPts~ 188 (281)
T d1r0wa_ 116 NIIFGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV-TLSGGQRARISLARAVYKDADLYLLDSPFGY 188 (281)
T ss_dssp HHTTTS------CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCT-TSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred CCCCCC------CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHCCCCHHHCCCCCC
T ss_conf 420333------456057999999977699998461233235555423-7799999999999999869635133385544
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 999999999999999996699899993585299998608398990695999944888
Q 000517 1031 LDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLG 1087 (1449)
Q Consensus 1031 LD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~~ 1087 (1449)
||+.+...+++.+......++|+|+++|++ +....+|++++|. +|++++.|++.
T Consensus 189 LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~-~G~i~~~Gt~~ 242 (281)
T d1r0wa_ 189 LDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILH-QGSSYFYGTFS 242 (281)
T ss_dssp SCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEE-TTEEEEEECHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEE-CCEEEEECCHH
T ss_conf 898999999999998862899999992528--9998599999998-99999987899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.1e-40 Score=266.08 Aligned_cols=198 Identities=24% Similarity=0.362 Sum_probs=167.2
Q ss_pred CCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCC
Q ss_conf 212241568838739999769999479999999299999997010999988507888899---51899757886688999
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPP---KTSAYISQNDLHIAEMT 261 (1449)
Q Consensus 185 ~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~~---~~~aYV~Q~D~h~~~lT 261 (1449)
+.|++||+.+++||+++|+||||||||||+++|+|..+ + +|+|.++|.++....++ ...+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~-~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-G---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC-C---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC-C---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCC
T ss_conf 15558888994898999998999809999999948879-9---5599999999986998999864024512135774420
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999999880299982235567209988629999979689999986310001212999999909975345323464455
Q 000517 262 VRETVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRR 341 (1449)
Q Consensus 262 VrEtL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~r 341 (1449)
+.+.+.+...-+ . .....+.+++.++|+...+..+++
T Consensus 89 v~~~~~~~~~~~---~------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~---- 125 (231)
T d1l7vc_ 89 VWHYLTLHQHDK---T------------------------------------RTELLNDVAGALALDDKLGRSTNQ---- 125 (231)
T ss_dssp HHHHHHHHCSCT---T------------------------------------CHHHHHHHHHHTTCTTTTTSBGGG----
T ss_pred HHHHHHHCCCHH---H------------------------------------HHHHHHHHHHHCCCHHHHCCCHHH----
T ss_conf 988764100146---6------------------------------------899999999865987676768445----
Q ss_pred CCCHHHHHHHHHHHHHHC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEE
Q ss_conf 677323315999999918-------9949899689999999999999999999987179689999825900488522719
Q 000517 342 GISGGQKKRLTTGEMIVG-------PTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDI 414 (1449)
Q Consensus 342 GLSGGQKKRvsiaeaLv~-------~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~I 414 (1449)
+||||||||++|++++. +|++++|||||+|||..++..+.+.++++.. .+.|++++.|. ..++.+++|++
T Consensus 126 -LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~vtHd-l~~~~~~~dri 202 (231)
T d1l7vc_ 126 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSSHD-LNHTLRHAHRA 202 (231)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEECCCC-HHHHHHHCSBC
T ss_pred -CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHHHHHHCCEE
T ss_conf -6998899999999998517133899889997187777898999999999999986-79999999677-99999979999
Q ss_pred EEEECCEEEEECCHHHHH
Q ss_conf 998189499945955599
Q 000517 415 ILMAEGKIVYHGPQDHVL 432 (1449)
Q Consensus 415 ilL~~G~ivy~Gp~~~~~ 432 (1449)
++|.+|++++.|+.+++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHH
T ss_conf 999799899988999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.2e-38 Score=257.46 Aligned_cols=195 Identities=23% Similarity=0.325 Sum_probs=149.9
Q ss_pred EEEECCEEEEECCCCHHCCCCCCCCCEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 89844501330431010025455653230020357737829999657999744798424099778704789999692274
Q 000517 849 VAFQDLKYYVDTPLEMRERGFADRKLRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKV 928 (1449)
Q Consensus 849 ~~~~~l~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~ 928 (1449)
++++|+++..+ +.+|+|||+.+++|+++||+||||||||||+++|+|...+ .+|+|.+||.+..
T Consensus 3 lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p--~~G~I~~~g~~i~ 66 (200)
T d1sgwa_ 3 LEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPIT 66 (200)
T ss_dssp EEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEGG
T ss_pred EEEEEEEEEEC--------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEHH
T ss_conf 99998999939--------------9288420889859989999999997199999999662056--7788999989626
Q ss_pred CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 00013348997048888999989999999998304999995789999999999839942112224688888789999999
Q 000517 929 QETFARVSGYCEQTDIHSPNITVEESVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKR 1008 (1449)
Q Consensus 929 ~~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gLSgGqrkR 1008 (1449)
..+...+|++|+..+...+|++|++.+.+.++... .+. ..+.+.++.+++.+... .++ .||||||||
T Consensus 67 --~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~-~~~-----~LSgG~~qr 133 (200)
T d1sgwa_ 67 --KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNK----NEIMDALESVEVLDLKK-KLG-----ELSQGTIRR 133 (200)
T ss_dssp --GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCTTS-BGG-----GSCHHHHHH
T ss_pred --HHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-CCH----HHHHHHHHHCCCCCCCC-CCC-----CCCCCHHHH
T ss_conf --73670899950135788828999999999754886-379----99999998748856301-268-----689718888
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEEC
Q ss_conf 99999996199788993999999999999999999999966998999935852999986083989906
Q 000517 1009 LTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKT 1076 (1449)
Q Consensus 1009 lsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl~~ 1076 (1449)
+.||++|+.+|++++|||||+|||..++..+++.++++.+.+.++|+++|+. ...+|.+..|.+
T Consensus 134 v~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 134 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH----HHHCCHHHHEEE
T ss_conf 9999988649989998686201699999999999999986799999999162----544161234010
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3e-37 Score=248.64 Aligned_cols=183 Identities=18% Similarity=0.306 Sum_probs=150.0
Q ss_pred CCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 21224156883873999976999947999999929999999701099998850788889951899757886688999999
Q 000517 185 NILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAEMTVRE 264 (1449)
Q Consensus 185 ~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~~~~~aYV~Q~D~h~~~lTVrE 264 (1449)
++|+|+|+.+++|++++|+||||||||||+++|+|.++|. +|+|.+||.++.+. +..++|++|+..+...+|++|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHH
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHHH--CCCEEEEEECCCCCCCCCHHH
T ss_conf 2884208898599899999999971999999996620567---78899998962673--670899950135788828999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999880299982235567209988629999979689999986310001212999999909975345323464455677
Q 000517 265 TVDFSARCQGVGSREETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGIS 344 (1449)
Q Consensus 265 tL~Faa~~~g~g~~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rGLS 344 (1449)
++.+.+...+.... .++ ....++.+++.+. +..+++ +|
T Consensus 90 ~l~~~~~~~~~~~~---------------------~~~---------------~~~~l~~~~~~~~-~~~~~~-----LS 127 (200)
T d1sgwa_ 90 YLKAVASLYGVKVN---------------------KNE---------------IMDALESVEVLDL-KKKLGE-----LS 127 (200)
T ss_dssp HHHHHHHHTTCCCC---------------------HHH---------------HHHHHHHTTCCCT-TSBGGG-----SC
T ss_pred HHHHHHHHCCCCCC---------------------HHH---------------HHHHHHHCCCCCC-CCCCCC-----CC
T ss_conf 99999975488637---------------------999---------------9999987488563-012686-----89
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEEC
Q ss_conf 323315999999918994989968999999999999999999998717968999982590048852271999818
Q 000517 345 GGQKKRLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAE 419 (1449)
Q Consensus 345 GGQKKRvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~~ 419 (1449)
||||||+.+|++++.+|++++|||||+|||..+...+++.|+++.+.. ++++++.|+. .+++|.+..|.+
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~-~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK-GIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHH-SEEEEEESSC----CTTSSEEEEGGG
T ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEEECH----HHHCCHHHHEEE
T ss_conf 718888999998864998999868620169999999999999998679-9999999162----544161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.37 E-value=5.8e-14 Score=101.84 Aligned_cols=80 Identities=16% Similarity=0.092 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCE
Q ss_conf 899999999999999619978899399999999999999999999996-6998999935852999986083989906959
Q 000517 1001 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVN-TGRTIVCTIHQPSIDIFEAFDELILLKTGGR 1079 (1449)
Q Consensus 1001 LSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~Hqps~~i~~~fD~illl~~gG~ 1079 (1449)
+++|++++..++.++..+|+++++|||+...+ .....+..+.++.+ .+.+++++.|+.+ .....|++..+. +|+
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~ 156 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHCCCCCEEEEEECCHH--HHHHHCEEEEEE-CCE
T ss_conf 53201378999999740997423027773100--4579999999875057978999974477--898636599871-999
Q ss_pred EEEECC
Q ss_conf 999448
Q 000517 1080 IIYCGP 1085 (1449)
Q Consensus 1080 ~~y~G~ 1085 (1449)
++.-++
T Consensus 157 i~~v~~ 162 (178)
T d1ye8a1 157 LIELTP 162 (178)
T ss_dssp EEECCT
T ss_pred EEEECC
T ss_conf 999899
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.28 E-value=3.6e-13 Score=96.83 Aligned_cols=158 Identities=13% Similarity=0.082 Sum_probs=98.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCE--EEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 99976999947999999929999999701099998850788889951--8997578866889999999999988029998
Q 000517 200 TLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKT--SAYISQNDLHIAEMTVRETVDFSARCQGVGS 277 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~~~~--~aYV~Q~D~h~~~lTVrEtL~Faa~~~g~g~ 277 (1449)
.+|.||||||||||+++|+|.+++. .|.+...|.+......+.. ..++..........+..+ ..
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 68 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTS-----------KK 68 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCC-----------SS
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCC---CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH
T ss_conf 9999899938999999998148888---646998771328888765311233667778875411345-----------54
Q ss_pred CHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 22355672099886299999796899999863100012129999999099753453234644556773233159999999
Q 000517 278 REETMMEVSRREKEAGIVPDPDIDTYMKAISVKGVKRTLQTDYILKILGLDVCADTMVGNAMRRGISGGQKKRLTTGEMI 357 (1449)
Q Consensus 278 ~~~~~~e~~~~e~~~~i~p~~d~d~~~~~~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rGLSGGQKKRvsiaeaL 357 (1449)
+ .. +. .. +.....+++|+++|..++.++
T Consensus 69 ~---------~~---------------------~~-----------------~~-----~~~~~~~~~~~~~~~~l~~~~ 96 (178)
T d1ye8a1 69 L---------VG---------------------SY-----------------GV-----NVQYFEELAIPILERAYREAK 96 (178)
T ss_dssp E---------ET---------------------TE-----------------EE-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred H---------HH---------------------HH-----------------HC-----CCCHHHHHHHHHHHHHHHHHH
T ss_conf 4---------30---------------------23-----------------03-----762566532013789999997
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEEEECCEEEEECC
Q ss_conf 1899498996899999999999999999999871796899998259004885227199981894999459
Q 000517 358 VGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIILMAEGKIVYHGP 427 (1449)
Q Consensus 358 v~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~IilL~~G~ivy~Gp 427 (1449)
..+|+++++|||... .......+..+.++....+.+++++.|+. +...+.|++..+.+|+++.-++
T Consensus 97 ~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 97 KDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEEEECCT
T ss_pred HCCCCCEEECCCCCC--CHHHHHHHHHHHHHHCCCCCEEEEEECCH--HHHHHHCEEEEEECCEEEEECC
T ss_conf 409974230277731--00457999999987505797899997447--7898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.14 E-value=9.5e-09 Score=68.94 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEE
Q ss_conf 7899999999999999----61997889939999999999999999999999669989999358529999860839899
Q 000517 1000 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILL 1074 (1449)
Q Consensus 1000 gLSgGqrkRlsIa~~L----~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl 1074 (1449)
.+|.|||+...++..+ ..+++++++|||-++|++.....+.+.|+..++ +.-|++|+|.| ++.+.+|++..+
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~v 294 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHGV 294 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 02577766777776655654226744554320335797899999999998554-88799998988--999732428999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.97 E-value=5.7e-09 Score=70.36 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=61.5
Q ss_pred CCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEE
Q ss_conf 55677323315999999----91899498996899999999999999999999871796899998259004885227199
Q 000517 340 RRGISGGQKKRLTTGEM----IVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDII 415 (1449)
Q Consensus 340 ~rGLSGGQKKRvsiaea----Lv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~Ii 415 (1449)
..-+|+|||....++.. ...++++++.|||-++|++.....+.+.|+..+. +.-++++. ++|++++.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitT--Hsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVIT--HNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEEC--CCTTGGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEE--CCHHHHHHCCCEE
T ss_conf 1102577766777776655654226744554320335797899999999998554--88799998--9889997324289
Q ss_pred E--EECC
Q ss_conf 9--8189
Q 000517 416 L--MAEG 420 (1449)
Q Consensus 416 l--L~~G 420 (1449)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEECC
T ss_conf 9999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=1.9e-09 Score=73.37 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEE
Q ss_conf 7899999999999999----61997889939999999999999999999999669989999358529999860839899
Q 000517 1000 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILL 1074 (1449)
Q Consensus 1000 gLSgGqrkRlsIa~~L----~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl 1074 (1449)
.+|||||.++++|.-+ ..+++++++|||+++||......+.+.|++++..+.-+|+|+|+| ++.+..|+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878--999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=1e-07 Score=62.50 Aligned_cols=74 Identities=22% Similarity=0.337 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEEEE
Q ss_conf 56773233159999999----18994989968999999999999999999998717968999982590048852271999
Q 000517 341 RGISGGQKKRLTTGEMI----VGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDIIL 416 (1449)
Q Consensus 341 rGLSGGQKKRvsiaeaL----v~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~Iil 416 (1449)
+-+|||||.++++|-.+ +.+++++++|||.++||+.....+.+.|++++. .+.-+|++.|+ |++.+.+|.++.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~--~~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECC--HHHHHHCCCEEE
T ss_conf 332230479999999999954799977999688777899999999999999728-99889999587--899973661799
Q ss_pred E
Q ss_conf 8
Q 000517 417 M 417 (1449)
Q Consensus 417 L 417 (1449)
.
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=0.00014 Score=42.59 Aligned_cols=44 Identities=11% Similarity=0.143 Sum_probs=25.6
Q ss_pred HCCCCEEEEECCCC---C--CCHHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 18994989968999---9--99999999999999998717968999982
Q 000517 358 VGPTKALFMDEITN---G--LDSSTAYQIIACIQQLVHITDSTALISLL 401 (1449)
Q Consensus 358 v~~~~vlllDEpTs---G--LDS~ta~~I~~~Lr~l~~~~~~Tviisl~ 401 (1449)
..+++++++|..+. | -|.....++++.|+.++...+.++++..|
T Consensus 130 ~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H 178 (274)
T d1nlfa_ 130 AEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHH 178 (274)
T ss_dssp HTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred CCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHH
T ss_conf 2676589628135422665232256899998877776447975401310
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.90 E-value=1.6e-05 Score=48.66 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=16.6
Q ss_pred CCCEEEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 22415688387399997699994799999992
Q 000517 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALS 218 (1449)
Q Consensus 187 L~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLa 218 (1449)
|+++.+=++||++++|.|+||+|||||+.-++
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 88874697898089999479997999999999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.81 E-value=0.00024 Score=41.21 Aligned_cols=59 Identities=8% Similarity=0.189 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 9999999996199788993999999999999999-999999966998999935852999986
Q 000517 1007 KRLTIAVELVANPSIIFMDEPTTGLDARAAAIVM-RAVKNIVNTGRTIVCTIHQPSIDIFEA 1067 (1449)
Q Consensus 1007 kRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~-~~l~~l~~~g~tvi~t~Hqps~~i~~~ 1067 (1449)
++++-....+.+.+++++||.-+|=++.....+. ..+..+.+.+..+++++|.. ++.+.
T Consensus 103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHHH
T ss_conf 8898775028977278554545686233200258888888862376137865202--33322
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.79 E-value=0.0003 Score=40.57 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=73.1
Q ss_pred EECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCC--CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 300203577378299996579997447984240997--787047899996922740001334899704888899998999
Q 000517 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRK--TSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEE 953 (1449)
Q Consensus 876 iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~--~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E 953 (1449)
-|+++.+-++||+++.|.|++|+||||++.-++-.. ..| . .+.|+. ..++..+
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g----------~---------~v~~~s------~E~~~~~ 78 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG----------K---------KVGLAM------LEESVEE 78 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC----------C---------CEEEEE------SSSCHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC----------C---------CEEEEE------ECCCHHH
T ss_conf 68887469789808999947999799999999972655336----------6---------345764------0111135
Q ss_pred HH-HHHHHH-CCCCCCCHHHHH-----HHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99-999983-049999957899-----9999999983-994211222468888878999999999999996199788993
Q 000517 954 SV-IFSAWL-RLAPEINSKTKA-----EFVNEVLETI-ELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1025 (1449)
Q Consensus 954 ~l-~f~a~l-r~~~~~~~~~~~-----~~v~~~l~~l-~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~il~lD 1025 (1449)
.. .+.+.. ..+.......+. ...++..+.+ +...... .+........+.....-...--.+|+++++|
T Consensus 79 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID 154 (277)
T d1cr2a_ 79 TAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHL----YDSFAEAETDRLLAKLAYMRSGLGCDVIILD 154 (277)
T ss_dssp HHHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEE----ECCC-CCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEE----ECCCCCHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 776999986458710101222221456778889887403521466----2143310689999986543213676259970
Q ss_pred CCC-----CCC--CHHHHHHHHHHHHHHHHC-CCEEEEEEC
Q ss_conf 999-----999--999999999999999966-998999935
Q 000517 1026 EPT-----TGL--DARAAAIVMRAVKNIVNT-GRTIVCTIH 1058 (1449)
Q Consensus 1026 EPT-----sgL--D~~~~~~i~~~l~~l~~~-g~tvi~t~H 1058 (1449)
--+ .+- +......+++.++++++. +.+|+++.|
T Consensus 155 ~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q 195 (277)
T d1cr2a_ 155 HISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH 195 (277)
T ss_dssp EEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECC
T ss_conf 54212034654430677899999999976501655203103
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.73 E-value=0.00019 Score=41.78 Aligned_cols=60 Identities=13% Similarity=0.162 Sum_probs=35.4
Q ss_pred CCCCEEEEECCCCC---CCHHHHHHHHHHHHHHHHCCCCEEEEEEECC---------CHHHHHHCCEEEEEE
Q ss_conf 89949899689999---9999999999999999871796899998259---------004885227199981
Q 000517 359 GPTKALFMDEITNG---LDSSTAYQIIACIQQLVHITDSTALISLLQP---------APETFDLFDDIILMA 418 (1449)
Q Consensus 359 ~~~~vlllDEpTsG---LDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp---------~~ei~~lFD~IilL~ 418 (1449)
..+++++.|..+.- .+.......+..|.++++..+.+++++.|.+ ...+...+|.++.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred CCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 088533220431430489999999999999999998698399998567512554457764046421699999
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=0.00027 Score=40.84 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=33.6
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHC-CCEEEEEECCCCH
Q ss_conf 99961997889939999999999999999-99999966-9989999358529
Q 000517 1013 VELVANPSIIFMDEPTTGLDARAAAIVMR-AVKNIVNT-GRTIVCTIHQPSI 1062 (1449)
Q Consensus 1013 ~~L~~~p~il~lDEPTsgLD~~~~~~i~~-~l~~l~~~-g~tvi~t~Hqps~ 1062 (1449)
.....+.+++++||+-+|=++.....+.. .+..+... +..+++|+|....
T Consensus 115 l~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 115 LHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp HHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 9745466088532223587745666789876454320454428985246877
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.59 E-value=2.8e-05 Score=47.10 Aligned_cols=27 Identities=33% Similarity=0.667 Sum_probs=21.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999976999947999999929999
Q 000517 196 PGRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 196 pG~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
+|+.++++|+||.|||||+|+|.|...
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~ 120 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK 120 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH
T ss_conf 698089978898778888773053555
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.57 E-value=0.00065 Score=38.45 Aligned_cols=31 Identities=23% Similarity=0.506 Sum_probs=19.1
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 8387399997699994799999992999999
Q 000517 194 LKPGRMTLLLGPPGCGKSTFLKALSGNLDPS 224 (1449)
Q Consensus 194 i~pG~lt~ILGpsGSGKSTLL~aLaG~l~~~ 224 (1449)
++.+.-.+|.||.||||||||++|.+..++.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 9837888999403566257899986530145
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.50 E-value=0.00045 Score=39.48 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=37.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEEEECCCHHHHHH
Q ss_conf 5999999918994989968999999999999999-999998717968999982590048852
Q 000517 350 RLTTGEMIVGPTKALFMDEITNGLDSSTAYQIIA-CIQQLVHITDSTALISLLQPAPETFDL 410 (1449)
Q Consensus 350 RvsiaeaLv~~~~vlllDEpTsGLDS~ta~~I~~-~Lr~l~~~~~~Tviisl~Qp~~ei~~l 410 (1449)
|++-.....+...+.++||+-+|=|+.....+.. .+..+.. .+..++++.|.+ ++-.+
T Consensus 104 ~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 104 EVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCH--HHHTC
T ss_pred HHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH-CCCCEEEEEECH--HHHHH
T ss_conf 898775028977278554545686233200258888888862-376137865202--33322
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.32 E-value=8.4e-05 Score=44.06 Aligned_cols=27 Identities=44% Similarity=0.623 Sum_probs=20.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999976999947999999929999
Q 000517 196 PGRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 196 pG~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.|++.+|.|||||||||+.++|+.++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.22 E-value=3.2e-05 Score=46.69 Aligned_cols=34 Identities=38% Similarity=0.580 Sum_probs=25.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 8739999769999479999999299999997010999
Q 000517 196 PGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVS 232 (1449)
Q Consensus 196 pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~ 232 (1449)
.|+.++++|+||.|||||+|+|.|...- ..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~---~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHH---HHCCCC
T ss_conf 3564999877873487898751517676---403555
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=8.3e-05 Score=44.11 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999769999479999999299999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLDP 223 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~~ 223 (1449)
+++|.|+||||||||++.|+.++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.13 E-value=9.6e-05 Score=43.69 Aligned_cols=26 Identities=38% Similarity=0.727 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 73999976999947999999929999
Q 000517 197 GRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 197 G~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
|++.+|+||||||||||.+.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.13 E-value=0.00016 Score=42.37 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 78299996579997447984240997
Q 000517 886 PGVLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 886 ~Ge~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
+|+.++++|+||+|||||+|.|.+..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 69808997889877888877305355
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.00054 Score=38.96 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=34.5
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHCCCCEEEEEEECC
Q ss_conf 918994989968999999999999999-99999871796899998259
Q 000517 357 IVGPTKALFMDEITNGLDSSTAYQIIA-CIQQLVHITDSTALISLLQP 403 (1449)
Q Consensus 357 Lv~~~~vlllDEpTsGLDS~ta~~I~~-~Lr~l~~~~~~Tviisl~Qp 403 (1449)
..++..+.++||+-+|=++.....+.. .+..+....+..++++.|.+
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 454660885322235877456667898764543204544289852468
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.03 E-value=0.00021 Score=41.52 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=15.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87399997699994799999992999
Q 000517 196 PGRMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 196 pG~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+++..|+|||||||||+.+.|+.++
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 87189998999989899999999986
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.00 E-value=0.00015 Score=42.46 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999769999479999999299999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNLDP 223 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l~~ 223 (1449)
+..++.||||||||||.++|++.+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.00018 Score=42.05 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=24.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 56883873999976999947999999929999
Q 000517 191 SGILKPGRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 191 Sg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.|=++||+++.|.||||||||||..-++....
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 58985997999995899999999999999998
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.00033 Score=40.35 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=19.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999976999947999999929999
Q 000517 196 PGRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 196 pG~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.|.|..|+||||||||||.+.|.-+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.87 E-value=0.00016 Score=42.39 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999769999479999999299999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNLDP 223 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l~~ 223 (1449)
++..|.|++|||||||+..|..++..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 09999809999899999999999986
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.83 E-value=0.00039 Score=39.88 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=11.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 782999965799974479842409
Q 000517 886 PGVLTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 886 ~Ge~~ai~G~sGaGKTTLl~~Lag 909 (1449)
.|.++.|.|++||||||+-+.|+.
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976999889999999999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.83 E-value=0.00025 Score=41.09 Aligned_cols=25 Identities=44% Similarity=0.765 Sum_probs=16.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999976999947999999929999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
++.+|.|||||||||+.+.|+.++.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.83 E-value=0.0003 Score=40.57 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+|+|+||+|||||+++|.|+
T Consensus 26 I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHCCC
T ss_conf 999899998799999985298
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.82 E-value=0.00024 Score=41.20 Aligned_cols=25 Identities=24% Similarity=0.487 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999976999947999999929999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
+..+|.||||||||||.++|+.++.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.81 E-value=0.00032 Score=40.45 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8299996579997447984240997
Q 000517 887 GVLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 887 Ge~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
|.++.|+||||||||||++.|..+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7499998999999999999998458
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.78 E-value=0.00041 Score=39.74 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999947999999929999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
+++|.||+|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.77 E-value=0.00031 Score=40.49 Aligned_cols=27 Identities=33% Similarity=0.672 Sum_probs=19.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999976999947999999929999
Q 000517 196 PGRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 196 pG~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
+|--.+|.|||||||||+.+.|+-++.
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 988899982899988999999999858
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.74 E-value=0.0005 Score=39.17 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999769999479999999299
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~ 220 (1449)
++..+.||||||||||.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.73 E-value=0.011 Score=30.62 Aligned_cols=41 Identities=24% Similarity=0.433 Sum_probs=21.0
Q ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 996199788993999999999999999999999966998999935852
Q 000517 1014 ELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPS 1061 (1449)
Q Consensus 1014 ~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps 1061 (1449)
+|=.+|.+++..|.. |..++...+ +.+.+|..|+.|+|-.+
T Consensus 223 ~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 223 ILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT 263 (401)
T ss_dssp HGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS
T ss_pred HHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCC
T ss_conf 984138889845768---759999999----99724985899833676
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.71 E-value=0.0006 Score=38.69 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=27.8
Q ss_pred CCCC-EEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1224-156883873999976999947999999929999
Q 000517 186 ILNH-VSGILKPGRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 186 IL~~-VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
-|++ +.|-+++|++++|.|+||+|||||..-++-..-
T Consensus 22 ~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 22 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 89972079862885999991799998999999999998
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.67 E-value=0.00041 Score=39.73 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=11.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399997699994799999992999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
++..|.|+|||||||+.+.|+.++
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 599998999999899999999972
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.64 E-value=0.00042 Score=39.66 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=19.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 387399997699994799999992999
Q 000517 195 KPGRMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 195 ~pG~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
+.+.+..|+|||||||||+-+.|+-++
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 678289998999998799999999986
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.63 E-value=0.00044 Score=39.51 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=23.0
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 568838739999769999479999999299
Q 000517 191 SGILKPGRMTLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 191 Sg~i~pG~lt~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.|=+++|++++|.||||||||||..-++-.
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 799869969999838999889999999998
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.59 E-value=0.00066 Score=38.40 Aligned_cols=24 Identities=29% Similarity=0.583 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399997699994799999992999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+.+|+|||||||||+-+.|+-++
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999997
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.58 E-value=0.00065 Score=38.45 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 78299996579997447984240997
Q 000517 886 PGVLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 886 ~Ge~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.|+++.|.|++||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.58 E-value=0.00091 Score=37.56 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=22.7
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 5688387399997699994799999992
Q 000517 191 SGILKPGRMTLLLGPPGCGKSTFLKALS 218 (1449)
Q Consensus 191 Sg~i~pG~lt~ILGpsGSGKSTLL~aLa 218 (1449)
.|=+++|++++|.||||||||||..-++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.00054 Score=38.97 Aligned_cols=26 Identities=42% Similarity=0.746 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999769999479999999299999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNLDP 223 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l~~ 223 (1449)
+...|.||||+|||||++.++..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 69999889997199999999999997
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.58 E-value=0.00062 Score=38.60 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+|.|||||||||+.+.|+-++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9898999999899999999997
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.57 E-value=0.0008 Score=37.89 Aligned_cols=26 Identities=46% Similarity=0.760 Sum_probs=15.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87399997699994799999992999
Q 000517 196 PGRMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 196 pG~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
+|--.+|+|||||||||.-+.||-++
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 96389998999998899999999986
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.55 E-value=0.0002 Score=41.66 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 78299996579997447984240997
Q 000517 886 PGVLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 886 ~Ge~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.|..++++|+||+|||||+|.|.+..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 35649998778734878987515176
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.51 E-value=0.00097 Score=37.37 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=18.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399997699994799999992999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+.+|+|||||||||+.+.|+.++
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999999899999999985
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.47 E-value=0.00078 Score=37.98 Aligned_cols=37 Identities=22% Similarity=0.394 Sum_probs=25.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 873999976999947999999929999999701099998850
Q 000517 196 PGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYK 237 (1449)
Q Consensus 196 pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~ 237 (1449)
|+.-.+++||||+|||.|.++||..+.. --+.+++-+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~-----~~~~i~~s~ 84 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATK 84 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCC-----CHHCCCCCC
T ss_conf 9866999899998888999998621322-----100034433
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.00078 Score=37.97 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7829999657999744798424099
Q 000517 886 PGVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 886 ~Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.|.++.|+||||+|||||++.|..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9809999999999999999999863
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=4.5e-05 Score=45.76 Aligned_cols=33 Identities=30% Similarity=0.212 Sum_probs=23.8
Q ss_pred CCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 2241568838739999769999479999999299
Q 000517 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 187 L~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.++.+..+.|| +|+|.||+||||||+|.||.--
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 70279974998-0899889999879999999999
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.00076 Score=38.02 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
+++|.|++|||||||++.|+.+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.42 E-value=0.00082 Score=37.82 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+++|+||+|||||+++|.|+.
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999988999999996898
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.42 E-value=0.0011 Score=37.02 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=13.0
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 399997699994799999992
Q 000517 198 RMTLLLGPPGCGKSTFLKALS 218 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLa 218 (1449)
++.+++|+|||||||+.+.|+
T Consensus 15 ~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 15 EVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998999998999999999
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.40 E-value=0.00076 Score=38.05 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999769999479999999299
Q 000517 199 MTLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~ 220 (1449)
..+|+|+|++|||||++.|.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.00032 Score=40.44 Aligned_cols=25 Identities=44% Similarity=0.501 Sum_probs=16.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7829999657999744798424099
Q 000517 886 PGVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 886 ~Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.|.++.|.|++||||||+-+.|+.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9969998899999999999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.39 E-value=0.0011 Score=36.91 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999976999947999999929999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
++.+|-|+|||||||+.+.|+-++.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8899989999898999999999998
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.0012 Score=36.69 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997699994799999992999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
..+|+|||||||||..+.|+-++
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.32 E-value=0.0012 Score=36.78 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=11.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+|+|++|+|||||++.|.|.
T Consensus 3 V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999899999999677
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.31 E-value=0.001 Score=37.27 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.+||+|.+|+|||||++.|.|+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.30 E-value=0.001 Score=37.17 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
..|+|||||||||+.+.|+-++
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.29 E-value=0.0013 Score=36.57 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|++|+|||||+++|.|.
T Consensus 11 V~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999778
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.28 E-value=0.0012 Score=36.79 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999947999999929999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.+|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.28 E-value=0.0012 Score=36.78 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997699994799999992999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
-.+|+|.+|+|||||+|+|.|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.017 Score=29.50 Aligned_cols=25 Identities=40% Similarity=0.837 Sum_probs=16.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999976999947999999929999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
+-+++.||||+|||++.++||..+.
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 8678668998882289999999829
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.0015 Score=36.17 Aligned_cols=26 Identities=42% Similarity=0.468 Sum_probs=19.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 73999976999947999999929999
Q 000517 197 GRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 197 G~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.-..+|.||||||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 32897438999989999999999997
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.0011 Score=37.00 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=22.0
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 56883873999976999947999999929
Q 000517 191 SGILKPGRMTLLLGPPGCGKSTFLKALSG 219 (1449)
Q Consensus 191 Sg~i~pG~lt~ILGpsGSGKSTLL~aLaG 219 (1449)
.|=+++|++++|.||||||||+|...++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69976897999988998878899999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.24 E-value=0.0015 Score=36.20 Aligned_cols=44 Identities=20% Similarity=0.436 Sum_probs=32.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 9999769999479999999299999997010999988507888899518997578
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQN 253 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~~~~~aYV~Q~ 253 (1449)
=.+++||+|||||-|.+.||+.++- =-+..++...+ .+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEEE------ECCEEECC
T ss_conf 4799899998899999999987389-----88986255114------11111044
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.24 E-value=0.001 Score=37.19 Aligned_cols=24 Identities=38% Similarity=0.703 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999947999999929999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
..++.||||+||||+.++||..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.024 Score=28.64 Aligned_cols=149 Identities=18% Similarity=0.200 Sum_probs=71.5
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 73782999965799974479842409977870478999969227400013348997048888999989999999998304
Q 000517 884 LRPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFSAWLRL 963 (1449)
Q Consensus 884 i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~ 963 (1449)
+.||+++.|.|++|+|||||+--|+-....|. . .+.+.... ...+-|+.-++.. -.+.+- +.+..
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~---~-~~~~~~~~----~~~vl~~~~E~~~---~~~~~R--l~~~~-- 90 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGP---D-LLEVGELP----TGPVIYLPAEDPP---TAIHHR--LHALG-- 90 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCC---C-TTCCCCCC----CCCEEEEESSSCH---HHHHHH--HHHHH--
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC---C-CCCCCCCC----CCCEEEEECCCHH---HHHHHH--HHHHH--
T ss_conf 55895899992899989999999999997699---7-21112357----8736898512349---999999--99986--
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC---C--CCHHHHHH
Q ss_conf 999995789999999999839942112224688888789999999999999961997889939999---9--99999999
Q 000517 964 APEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTT---G--LDARAAAI 1038 (1449)
Q Consensus 964 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTs---g--LD~~~~~~ 1038 (1449)
.+.+.... ......+.+.+..+... ....-..... -..-..+|.++++|--+. + -|......
T Consensus 91 -~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~ 157 (274)
T d1nlfa_ 91 -AHLSAEER----QAVADGLLIQPLIGSLP-----NIMAPEWFDG---LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 157 (274)
T ss_dssp -TTSCHHHH----HHHHHHEEECCCTTSCC-----CTTSHHHHHH---HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred -HCCCHHHH----HCCCCCCEECCCCCCCC-----HHHHHHHHHH---HHHHCCCCCEEECCCHHHHCCCCCCCHHHHHH
T ss_conf -23686665----31233323214567420-----3578999999---88752676589628135422665232256899
Q ss_pred HHHHHHHHHHC-CCEEEEEECCC
Q ss_conf 99999999966-99899993585
Q 000517 1039 VMRAVKNIVNT-GRTIVCTIHQP 1060 (1449)
Q Consensus 1039 i~~~l~~l~~~-g~tvi~t~Hqp 1060 (1449)
+++.++.++.. |.+|+++.|..
T Consensus 158 ~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 158 VIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 99887777644797540131005
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.22 E-value=0.00077 Score=37.99 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999657999744798424099
Q 000517 890 TALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 890 ~ai~G~sGaGKTTLl~~Lagr 910 (1449)
+||+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=5.5e-05 Score=45.22 Aligned_cols=32 Identities=34% Similarity=0.380 Sum_probs=26.7
Q ss_pred EECCCEEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 300203577378299996579997447984240
Q 000517 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLA 908 (1449)
Q Consensus 876 iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~La 908 (1449)
..++.++.+.+| ++.|+|+|||||||++++|.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 870279974998-08998899998799999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.0017 Score=35.90 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=18.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999976999947999999929999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
++..|+||||+||+||++.|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.20 E-value=0.0015 Score=36.24 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999947999999929999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.+|+|.||+|||||+|+|.|.-.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999978999999958886
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.14 E-value=0.0011 Score=37.08 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=14.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
-+.|.||+|+|||+|.+.+++.
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHH
T ss_conf 5788789987630477887877
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.11 E-value=0.0021 Score=35.27 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.-+.+.||+|+|||+|.+.|+..
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHH
T ss_conf 86786689988822899999998
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.10 E-value=0.0014 Score=36.40 Aligned_cols=24 Identities=46% Similarity=0.625 Sum_probs=11.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHH
Q ss_conf 688387399997699994799999
Q 000517 192 GILKPGRMTLLLGPPGCGKSTFLK 215 (1449)
Q Consensus 192 g~i~pG~lt~ILGpsGSGKSTLL~ 215 (1449)
|=+++|+++.|.|+||+|||+|..
T Consensus 21 GGi~~G~~~~I~G~~G~GKT~la~ 44 (242)
T d1tf7a1 21 GGLPIGRSTLVSGTSGTGKTLFSI 44 (242)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHH
T ss_conf 899698399999479999999999
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.0016 Score=35.99 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 378299996579997447984240997
Q 000517 885 RPGVLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 885 ~~Ge~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.09 E-value=0.0015 Score=36.20 Aligned_cols=25 Identities=40% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999769999479999999299999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLDP 223 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~~ 223 (1449)
..+|.|||||||+||++.|+.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.09 E-value=0.0017 Score=35.82 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
..|+|||||||||+.+.||-++
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998799999999987
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.09 E-value=0.002 Score=35.45 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999976999947999999929999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.+.+++|.|||||||+.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.08 E-value=0.0017 Score=35.79 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 378299996579997447984240997
Q 000517 885 RPGVLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 885 ~~Ge~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
++|-.++|.|++||||||+.+.|+.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=96.07 E-value=0.0024 Score=34.85 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=20.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7399997699994799999992999
Q 000517 197 GRMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 197 G~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.....|.||||||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.05 E-value=0.0019 Score=35.55 Aligned_cols=22 Identities=27% Similarity=0.649 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+|+|||||||||+-+.||-++
T Consensus 9 IiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 9 AAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998799999999997
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.03 E-value=0.0014 Score=36.38 Aligned_cols=22 Identities=45% Similarity=0.973 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.++.||||+|||+|.++|+..+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 8876689888359999999873
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.03 E-value=0.0019 Score=35.52 Aligned_cols=25 Identities=40% Similarity=0.760 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999769999479999999299999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLDP 223 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~~ 223 (1449)
-+++.||||+||||+.++|+..+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 4898799997388999999850388
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.03 E-value=0.0023 Score=34.95 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=12.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++|+|.+|+|||||++.|.|+
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.03 E-value=0.0018 Score=35.65 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=25.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3873999976999947999999929999
Q 000517 195 KPGRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 195 ~pG~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
++|.+..|.|+|||||||+-++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.02 E-value=0.002 Score=35.41 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999947999999929999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
+.+|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.0024 Score=34.91 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=10.1
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999657999744798424099
Q 000517 890 TALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 890 ~ai~G~sGaGKTTLl~~Lagr 910 (1449)
++++|.+++|||||+|.|.|+
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999979999899999999589
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.01 E-value=0.0014 Score=36.40 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+|+|+|++|||||+++|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.0025 Score=34.79 Aligned_cols=23 Identities=39% Similarity=0.712 Sum_probs=13.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
-.++++|++++|||||++.|.|+
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999899999899999999688
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.01 E-value=0.009 Score=31.26 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
-+.+.||+|+|||+|.+.|++.
T Consensus 44 giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 4887668988835999999987
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.00 E-value=0.0024 Score=34.94 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=20.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999976999947999999929999
Q 000517 196 PGRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 196 pG~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
|-+=.++.||||+|||++.++||..+.
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 980799889699988999999862010
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.98 E-value=0.0017 Score=35.91 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999947999999929999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.+|+|++|+|||||++.|.+...
T Consensus 16 I~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 16 LVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999898999999967887
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.98 E-value=0.0018 Score=35.68 Aligned_cols=23 Identities=48% Similarity=0.702 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999947999999929999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.+|+||||||||||.+.|+-+.+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.0014 Score=36.37 Aligned_cols=24 Identities=42% Similarity=0.674 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999947999999929999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
...|.|||||||||+-+.||-++.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.97 E-value=0.0022 Score=35.18 Aligned_cols=22 Identities=55% Similarity=0.860 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+|+|||||||||+-+.|+-++
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999799999999998
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.95 E-value=0.0022 Score=35.09 Aligned_cols=22 Identities=41% Similarity=0.767 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
..|+|||||||||+.+.|+-++
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999996
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.0024 Score=34.88 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=15.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 577378299996579997447984240
Q 000517 882 GSLRPGVLTALMGVSGAGKTTLMDVLA 908 (1449)
Q Consensus 882 ~~i~~Ge~~ai~G~sGaGKTTLl~~La 908 (1449)
|-+++|.++-+.|++|+|||||+--++
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~ 75 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVI 75 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 996673589980577747899999999
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.94 E-value=0.0015 Score=36.18 Aligned_cols=37 Identities=30% Similarity=0.466 Sum_probs=25.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC-CCEEEEEEEECC
Q ss_conf 2999965799974479842409977-870478999969
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGRKT-SGYVEGEIKISG 924 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr~~-~~~~~G~i~i~g 924 (1449)
.+++|+|.+|||||||+.-|..+.. .|..-|.|.-++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 09999809999899999999999986798379998316
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.002 Score=35.37 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+++|||||||||..+.|+-++
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998799999899999999986
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.91 E-value=0.0018 Score=35.75 Aligned_cols=22 Identities=41% Similarity=0.804 Sum_probs=11.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.++.||||+|||+|.++++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 6876699888308999999874
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.90 E-value=0.0024 Score=34.88 Aligned_cols=22 Identities=50% Similarity=0.780 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.++.||||+||||+.++++..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.82 E-value=0.0022 Score=35.12 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
-++|+|++|+|||||++.|.|++
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.0031 Score=34.22 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999947999999929999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
+.+|.|||||||||+-+.|+.++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.81 E-value=0.003 Score=34.28 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999947999999929999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
..+|.|||||||||.-+.||-++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.81 E-value=0.003 Score=34.24 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999947999999929999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.+++|++|+|||||++.|.+...
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHCCCCC
T ss_conf 99999999899999999808998
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.81 E-value=0.0024 Score=34.87 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999769999479999999299
Q 000517 199 MTLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~ 220 (1449)
-.+|+|+||+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.81 E-value=0.0017 Score=35.79 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+|+|+|++|||||+++|+|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.80 E-value=0.0028 Score=34.45 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999947999999929999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
..|+|+|||||||+-+.||-++.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999949
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.79 E-value=0.0022 Score=35.12 Aligned_cols=23 Identities=43% Similarity=0.846 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999947999999929999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
+++-||||+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.78 E-value=0.0021 Score=35.22 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299996579997447984240997
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
..++|.|++|+|||||.+.|+.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.77 E-value=0.0029 Score=34.34 Aligned_cols=23 Identities=43% Similarity=0.702 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999947999999929999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
..|.|+|||||||+.++||.++.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999988999999999839
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.76 E-value=0.003 Score=34.29 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+|+|+|.||||||+++|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.74 E-value=0.0023 Score=35.01 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+|+|+||+|||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.73 E-value=0.0033 Score=34.04 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=16.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87399997699994799999992999
Q 000517 196 PGRMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 196 pG~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.++.++|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.69 E-value=0.0025 Score=34.82 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965799974479842409
Q 000517 889 LTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lag 909 (1449)
++++.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.0027 Score=34.59 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=26.1
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 35773782999965799974479842409
Q 000517 881 TGSLRPGVLTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 881 s~~i~~Ge~~ai~G~sGaGKTTLl~~Lag 909 (1449)
.|-+++|+++.|.|++|+|||||..-++.
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 58985997999995899999999999999
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.0036 Score=33.81 Aligned_cols=23 Identities=39% Similarity=0.697 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997699994799999992999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
-.+++|+|++|||||+++|.|+-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998999998999999996888
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.66 E-value=0.0027 Score=34.59 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+++|+|++|||||++.|.+.-
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.0017 Score=35.90 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++|+|.+++|||||++.|.+.+
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.65 E-value=0.0038 Score=33.64 Aligned_cols=26 Identities=38% Similarity=0.635 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999769999479999999299999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNLDP 223 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l~~ 223 (1449)
++.+|.|+|||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.64 E-value=0.0035 Score=33.88 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997699994799999992999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
-.+|+|.||||||||++.|.+.-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999996688
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.60 E-value=0.0031 Score=34.20 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299996579997447984240997
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
-.++|+|.+|+|||||+|.|.|+.
T Consensus 33 l~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 33 LTILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 489998999986999999985898
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.58 E-value=0.0032 Score=34.09 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299996579997447984240997
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
--+||+|.+|+|||||+|.|.|+.
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 179998999997899999995888
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.0035 Score=33.88 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++.|+||||+||+||++-|..+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 71999998999999999999970
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.55 E-value=0.0039 Score=33.57 Aligned_cols=22 Identities=45% Similarity=0.715 Sum_probs=14.7
Q ss_pred EEECCCCCCHHHHHHHHHCCCC
Q ss_conf 9976999947999999929999
Q 000517 201 LLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 201 ~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.++|+|||||||+-+.||.++.
T Consensus 5 vliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 5 VLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEECSTTSSHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHC
T ss_conf 9988999988999999999849
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.55 E-value=0.0031 Score=34.16 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+++|+||+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989999999996798
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.55 E-value=0.0048 Score=33.01 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=21.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 739999769999479999999299999
Q 000517 197 GRMTLLLGPPGCGKSTFLKALSGNLDP 223 (1449)
Q Consensus 197 G~lt~ILGpsGSGKSTLL~aLaG~l~~ 223 (1449)
...++|.||||+||||+++.|+..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 881688898999899999999999754
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.55 E-value=0.0045 Score=33.17 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8299996579997447984240997
Q 000517 887 GVLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 887 Ge~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
+-.+|++|.+|+|||||++.|.|..
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.52 E-value=0.0041 Score=33.39 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+++|.|++|||||+++|.|.-
T Consensus 8 I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999799998999999995898
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.0047 Score=33.04 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999947999999929999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
+.+|-|++||||||+-+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.46 E-value=0.0056 Score=32.56 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=12.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7399997699994799999992999
Q 000517 197 GRMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 197 G~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
|.+..+.|.|||||||+.+.|+-++
T Consensus 24 g~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 24 GLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8699998999999899999999887
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.45 E-value=0.0034 Score=33.91 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999657999744798424099
Q 000517 890 TALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 890 ~ai~G~sGaGKTTLl~~Lagr 910 (1449)
+.|+|||||||+||++.|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999989999999974
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.45 E-value=0.0036 Score=33.81 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
-++||-|++|||||||.+.|+..
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89997898878999999999998
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.44 E-value=0.0038 Score=33.62 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999965799974479842409977
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRKT 912 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~~ 912 (1449)
.++|+|++|||||||++.|.+...
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999889999999967999
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.41 E-value=0.0047 Score=33.03 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997699994799999992999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
..+|+|++|+|||||++.|.|+-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.36 E-value=0.0046 Score=33.09 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299996579997447984240997
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++.|.|++||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 089998999999899999999980
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.36 E-value=0.0046 Score=33.09 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 2999965799974479842409
Q 000517 888 VLTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lag 909 (1449)
+++.|.|++|||||||.+-|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.35 E-value=0.0043 Score=33.31 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999769999479999999299
Q 000517 199 MTLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~ 220 (1449)
..+|+|++.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.31 E-value=0.0049 Score=32.96 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++++|++|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.31 E-value=0.0047 Score=33.06 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999947999999929999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
-.+++|+|++|||||+++|.|...
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899988999989999999858985
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.30 E-value=0.032 Score=27.82 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=14.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399997699994799999992999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+.+++||+|+||||.+--||.++
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 689998999998899999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.23 E-value=0.0045 Score=33.17 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.+.|+|++||||||+.+.|+.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.0063 Score=32.23 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=13.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 87399997699994799999992999
Q 000517 196 PGRMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 196 pG~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.|.+.++-|+.||||||+.+.|+..+
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 80599998998889999999999999
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.23 E-value=0.0056 Score=32.59 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8299996579997447984240997
Q 000517 887 GVLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 887 Ge~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
..++.|.|++||||||+.+.|+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 8599998999999899999999972
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.21 E-value=0.0036 Score=33.79 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579997447984240997
Q 000517 890 TALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 890 ~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
+||+|.+++|||||++.|.|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.21 E-value=0.058 Score=26.15 Aligned_cols=164 Identities=15% Similarity=0.059 Sum_probs=77.4
Q ss_pred EECCC-EEEEECCEEEEEECCCCCCHHHHHHHHCCC-CCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 30020-357737829999657999744798424099-7787047899996922740001334899704888899998999
Q 000517 876 LLYDV-TGSLRPGVLTALMGVSGAGKTTLMDVLAGR-KTSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEE 953 (1449)
Q Consensus 876 iL~~v-s~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr-~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E 953 (1449)
-|+++ .|-+++|+++.|.|++|+|||+|..-++.. ...+ + ....|+.- ..+..+
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~---------~---------~~~~~~s~------e~~~~~ 69 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF---------D---------EPGVFVTF------EETPQD 69 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH---------C---------CCEEEEES------SSCHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC---------C---------CCCCCCCC------CCCHHH
T ss_conf 79885568996983999994799999999999999999856---------8---------87420126------679999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHH--HCCCEEEEECCCCC
Q ss_conf 9999998304999995789999999999839942112224688888789999-99999999996--19978899399999
Q 000517 954 SVIFSAWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQ-RKRLTIAVELV--ANPSIIFMDEPTTG 1030 (1449)
Q Consensus 954 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gLSgGq-rkRlsIa~~L~--~~p~il~lDEPTsg 1030 (1449)
......... ... +...+............... ........ ...+.-....+ .+|++++.|--+.-
T Consensus 70 ~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l 137 (242)
T d1tf7a1 70 IIKNARSFG----WDL-------AKLVDEGKLFILDASPDPEG-QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSV 137 (242)
T ss_dssp HHHHHGGGT----CCH-------HHHHHTTSEEEEECCCCSSC-CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTT
T ss_pred HHHHHHHCC----CCH-------HHHHHHCCHHHHHHCCCHHH-HHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999849----984-------89887143024442103354-444302458999999999988631222002078899
Q ss_pred C----C-HHHHHHHHHHHHHHHHCCCEEEEEECCCCH--------HHHHHCCEEEEEE
Q ss_conf 9----9-999999999999999669989999358529--------9998608398990
Q 000517 1031 L----D-ARAAAIVMRAVKNIVNTGRTIVCTIHQPSI--------DIFEAFDELILLK 1075 (1449)
Q Consensus 1031 L----D-~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~--------~i~~~fD~illl~ 1075 (1449)
. + ......+.+.++..++.+.|++++.|.... ..-..+|.++.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 138 FQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 8760572678999999999998639716884210255422246762335362999988
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.21 E-value=0.0046 Score=33.11 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999657999744798424099
Q 000517 890 TALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 890 ~ai~G~sGaGKTTLl~~Lagr 910 (1449)
+.|+||||+|||||++.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.19 E-value=0.006 Score=32.37 Aligned_cols=22 Identities=45% Similarity=0.853 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.++-||||+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.17 E-value=0.0021 Score=35.22 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999769999479999999299999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLDP 223 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~~ 223 (1449)
-+++.||||+|||||++.+++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 0899889985299999999873798
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.16 E-value=0.006 Score=32.40 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++.|+||+||||||+-+.|+..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48999899999889999999999
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=95.14 E-value=0.005 Score=32.89 Aligned_cols=28 Identities=32% Similarity=0.331 Sum_probs=22.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3873999976999947999999929999
Q 000517 195 KPGRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 195 ~pG~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
+.++..++.||||+|||++.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.14 E-value=0.0029 Score=34.36 Aligned_cols=27 Identities=37% Similarity=0.404 Sum_probs=24.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999976999947999999929999
Q 000517 196 PGRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 196 pG~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.|....+.|+|||||||+-+.|+-++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.13 E-value=0.013 Score=30.17 Aligned_cols=33 Identities=27% Similarity=0.224 Sum_probs=23.5
Q ss_pred CCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 2241568838739999769999479999999299
Q 000517 187 LNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 187 L~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~ 220 (1449)
+|. +...-.|.=.++.|+||+|||||...|..+
T Consensus 6 ~H~-~~v~~~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 6 IHG-VLLEVFGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEE-EEEEETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEE-EEEEECCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 789-999999999999818999989999999985
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.11 E-value=0.0079 Score=31.62 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=13.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7399997699994799999992999
Q 000517 197 GRMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 197 G~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
++..+++||+|+||||.+-=||.++
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7799998999998899999999999
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.09 E-value=0.0067 Score=32.09 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999947999999929999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.++-||||+||||+.++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.05 E-value=0.012 Score=30.40 Aligned_cols=31 Identities=26% Similarity=0.144 Sum_probs=22.5
Q ss_pred EEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 1568838739999769999479999999299
Q 000517 190 VSGILKPGRMTLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 190 VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~ 220 (1449)
-+...-.|.=.++.|+||+|||||...|..+
T Consensus 7 ~~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 7 GVLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 9999999999999808999989999999985
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=95.04 E-value=0.0069 Score=31.98 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
...+.||+|+|||.|.+.|++.
T Consensus 125 ~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 3888779985088999999998
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.04 E-value=0.005 Score=32.86 Aligned_cols=21 Identities=48% Similarity=0.716 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|++|+|||||++.+.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998999999999648
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=0.0063 Score=32.27 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
++||-|++||||||+-+.|+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978799999999999
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.01 E-value=0.008 Score=31.58 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+|+|..+||||||+++|.|.
T Consensus 27 ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTS
T ss_pred EEEEECCCCCHHHHHHHHHCC
T ss_conf 999818989799999999689
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.99 E-value=0.0071 Score=31.91 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=22.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 37829999657999744798424099
Q 000517 885 RPGVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 885 ~~Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
++|-.+.|+||+||||||+-+.|+.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.97 E-value=0.0044 Score=33.23 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=14.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997699994799999992999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
+.++.||||+||||++++++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89967899989999999999998
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.96 E-value=0.0059 Score=32.40 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299996579997447984240997
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
-.++|+|++|+|||||++.|.+..
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789999999989899999996788
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.95 E-value=0.0075 Score=31.77 Aligned_cols=22 Identities=41% Similarity=0.825 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.++.||||+||||+.++++..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899877558999999985
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.92 E-value=0.0052 Score=32.75 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=14.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 73999976999947999999929999
Q 000517 197 GRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 197 G~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
+++.+|=|+.||||||+++.|+.++.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.92 E-value=0.0066 Score=32.14 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999976999947999999929999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
-+.+|-|+.||||||+++.|+..+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.88 E-value=0.0066 Score=32.14 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 782999965799974479842409
Q 000517 886 PGVLTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 886 ~Ge~~ai~G~sGaGKTTLl~~Lag 909 (1449)
..-.+||.|++|||||||++.|..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 832897438999989999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.87 E-value=0.0072 Score=31.89 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.+++|.|++||||||+.+.|+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998989999999999
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.87 E-value=0.011 Score=30.76 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=27.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 873999976999947999999929999999701099998850
Q 000517 196 PGRMTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYK 237 (1449)
Q Consensus 196 pG~lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~ 237 (1449)
|....+++||+|+|||.|.++||-.+. .--|.+|...
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~-----~~~i~~d~s~ 87 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSE 87 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCC-----CCEEEECCCC
T ss_conf 765899977875006999999986336-----7706741544
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.82 E-value=0.009 Score=31.27 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=31.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 9999769999479999999299999997010999988507888899518997578866889
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHIAE 259 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~~~~~aYV~Q~D~h~~~ 259 (1449)
+.+|.|+|||||||+-+.|...+... .....+..++++|-|.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH-----------------CCCCCEEEEEEEEEECCC
T ss_conf 99996899998768999999997304-----------------689965999521568984
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.82 E-value=0.0071 Score=31.93 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.81 E-value=0.0087 Score=31.36 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+|+|.|.+|||||+++|+|--
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 7688999998999999997889
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=0.01 Score=30.95 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=16.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 73999976999947999999929999
Q 000517 197 GRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 197 G~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
|++.++-|+.||||||+.+.|+.++.
T Consensus 2 gkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 87899989988879999999999999
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.79 E-value=0.0063 Score=32.26 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=27.8
Q ss_pred ECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 002035773782999965799974479842409977
Q 000517 877 LYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT 912 (1449)
Q Consensus 877 L~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~ 912 (1449)
+.-+...++.|.-+.|.|+.||||||||+.|.+...
T Consensus 156 ~~~l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 156 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 999999998378889994035662578999865301
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.74 E-value=0.009 Score=31.28 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 829999657999744798424099
Q 000517 887 GVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 887 Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
-.++.|+||+||||||+.+.|+.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 728999899999989999999998
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.73 E-value=0.0073 Score=31.83 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.+.|.|++|+|||||+..++...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899971999999999999
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.72 E-value=0.0017 Score=35.87 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|+|++|||||+++|.|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.65 E-value=0.013 Score=30.20 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999947999999929999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.+++|+..+|||||+++|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99993458849999999970344
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.63 E-value=0.012 Score=30.56 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=12.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHH
Q ss_conf 577378299996579997447984
Q 000517 882 GSLRPGVLTALMGVSGAGKTTLMD 905 (1449)
Q Consensus 882 ~~i~~Ge~~ai~G~sGaGKTTLl~ 905 (1449)
|-++.|.++.+.|++|+|||||+-
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l 78 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVAL 78 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHH
T ss_conf 986663369996488748899999
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.61 E-value=0.0095 Score=31.11 Aligned_cols=30 Identities=33% Similarity=0.494 Sum_probs=26.2
Q ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 035773782999965799974479842409
Q 000517 880 VTGSLRPGVLTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 880 vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lag 909 (1449)
+.|.+++|+++.|.|++|+||||+..-++-
T Consensus 27 l~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 27 LGGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 079862885999991799998999999999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.60 E-value=0.015 Score=29.86 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=20.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 829999657999744798424099
Q 000517 887 GVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 887 Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
..+++++||+|+||||.+-=||.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.59 E-value=0.009 Score=31.28 Aligned_cols=29 Identities=34% Similarity=0.508 Sum_probs=25.5
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 35773782999965799974479842409
Q 000517 881 TGSLRPGVLTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 881 s~~i~~Ge~~ai~G~sGaGKTTLl~~Lag 909 (1449)
.|-+++|+++.|.|++|+|||||.--++-
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79986996999983899988999999999
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.56 E-value=0.0097 Score=31.07 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
-.+||.||+||||||+-+.|+..
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 59997899987989999999999
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.56 E-value=0.0088 Score=31.34 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=9.2
Q ss_pred EEEECCCCCCHHHHHHHHC
Q ss_conf 9996579997447984240
Q 000517 890 TALMGVSGAGKTTLMDVLA 908 (1449)
Q Consensus 890 ~ai~G~sGaGKTTLl~~La 908 (1449)
+.|.||+|+||||+...++
T Consensus 36 lll~Gp~G~GKTt~~~~la 54 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALL 54 (252)
T ss_dssp EEEECSTTSSHHHHHHTHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9988999998899999999
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.53 E-value=0.018 Score=29.41 Aligned_cols=34 Identities=26% Similarity=0.170 Sum_probs=24.6
Q ss_pred CCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 12241568838739999769999479999999299
Q 000517 186 ILNHVSGILKPGRMTLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 186 IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.|+. +.....|.=.++.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.51 E-value=0.0059 Score=32.41 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=27.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEECC
Q ss_conf 78299996579997447984240997-7870478999969
Q 000517 886 PGVLTALMGVSGAGKTTLMDVLAGRK-TSGYVEGEIKISG 924 (1449)
Q Consensus 886 ~Ge~~ai~G~sGaGKTTLl~~Lagr~-~~~~~~G~i~i~g 924 (1449)
..-.++|.|+.|||||||++.|.... ..|..-|-|.++-
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDp 89 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 89 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 8159861179988899999999998763687513443465
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.51 E-value=0.013 Score=30.33 Aligned_cols=21 Identities=48% Similarity=0.729 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.49 E-value=0.0096 Score=31.10 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=24.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 3577378299996579997447984240
Q 000517 881 TGSLRPGVLTALMGVSGAGKTTLMDVLA 908 (1449)
Q Consensus 881 s~~i~~Ge~~ai~G~sGaGKTTLl~~La 908 (1449)
.|-+++|+++.|.|++|+||||+.--++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.49 E-value=0.012 Score=30.46 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=12.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99997699994799999992
Q 000517 199 MTLLLGPPGCGKSTFLKALS 218 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLa 218 (1449)
+.+|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.49 E-value=0.0097 Score=31.07 Aligned_cols=21 Identities=24% Similarity=0.662 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999996989999999709
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.46 E-value=0.0087 Score=31.36 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.+.|+||+||||||+.+.|+.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889999989999999998
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.46 E-value=0.0093 Score=31.18 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.45 E-value=0.017 Score=29.56 Aligned_cols=23 Identities=48% Similarity=0.827 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999947999999929999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.+++|.+|+|||||++.+.+.-.
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.43 E-value=0.0096 Score=31.10 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579997447984240997
Q 000517 890 TALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 890 ~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
+.|+|++||||||+.+.||.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.42 E-value=0.013 Score=30.34 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=13.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999769999479999999299
Q 000517 199 MTLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~ 220 (1449)
..+|+|.-+||||||+++|.|.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999768989799999999689
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.38 E-value=0.0099 Score=31.01 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.+.|.|++|+||||+-+.|+-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.38 E-value=0.0095 Score=31.11 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++++|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.36 E-value=0.01 Score=30.98 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
-+||+|...||||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.32 E-value=0.0086 Score=31.39 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 37829999657999744798424099
Q 000517 885 RPGVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 885 ~~Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
+.+.++.|+||+||||||+.+.|+.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67828999899999879999999998
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.30 E-value=0.02 Score=29.13 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999769999479999999299
Q 000517 199 MTLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~ 220 (1449)
-++|+|-|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789999899999999778
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.26 E-value=0.0079 Score=31.61 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=29.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 99997699994799999992999999970109999885078888995189975788668
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLDPSLKVTGEVSYNGYKLEEFVPPKTSAYISQNDLHI 257 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~~~~~~sG~V~~nG~~~~~~~~~~~~aYV~Q~D~h~ 257 (1449)
+.+|-|+|||||||+.++|...+.. .| -.++.++|+|-|-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~----~~---------------v~~~iI~~Dsfyr 45 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRR----EG---------------VKAVSIEGDAFHR 45 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHH----HT---------------CCEEEEEGGGGBS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH----CC---------------CCEEEEECCCCCC
T ss_conf 9999899978099999999999715----69---------------9769994777875
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.19 E-value=0.012 Score=30.42 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99976999947999999929
Q 000517 200 TLLLGPPGCGKSTFLKALSG 219 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG 219 (1449)
.+++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.015 Score=29.83 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|++|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.18 E-value=0.012 Score=30.53 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.+.|+|++||||||+-+.||.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.012 Score=30.56 Aligned_cols=21 Identities=38% Similarity=0.727 Sum_probs=14.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.16 E-value=0.013 Score=30.20 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
++.|+||+||||||..+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.15 E-value=0.02 Score=29.04 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=16.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399997699994799999992999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
...+++||+|+||||.+--||-++
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999998899999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.12 E-value=0.013 Score=30.36 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
-++||-|++||||||+-+.|...
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHHH
T ss_conf 89999689999876899999999
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.12 E-value=0.018 Score=29.39 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997699994799999992999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
+.+|-|++|||||||-..|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.12 E-value=0.017 Score=29.55 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8299996579997447984240997
Q 000517 887 GVLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 887 Ge~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
+.+++|-|+.||||||+++.|+...
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9889998788877999999999997
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.11 E-value=0.016 Score=29.74 Aligned_cols=29 Identities=34% Similarity=0.572 Sum_probs=13.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 68838739999769999479999999299
Q 000517 192 GILKPGRMTLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 192 g~i~pG~lt~ILGpsGSGKSTLL~aLaG~ 220 (1449)
|-++.|++|.+-||+|||||||...++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98667547898058765227999999999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.09 E-value=0.012 Score=30.50 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 2999965799974479842409977
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGRKT 912 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr~~ 912 (1449)
..+.|.||+|+|||||.+.|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.08 E-value=0.017 Score=29.51 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=14.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399997699994799999992999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+.+++||+|+||||.+-=||-++
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp EEEEEECSCCC----HHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999999899999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.06 E-value=0.012 Score=30.41 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++++|.+|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.05 E-value=0.018 Score=29.37 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299996579997447984240997
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
-+++|-|+.||||||+++.|+...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.04 E-value=0.016 Score=29.65 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 782999965799974479842409
Q 000517 886 PGVLTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 886 ~Ge~~ai~G~sGaGKTTLl~~Lag 909 (1449)
.-+++.++|++||||||+.+-++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.04 E-value=0.012 Score=30.40 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997998999999999809
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.04 E-value=0.011 Score=30.70 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
-++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.03 E-value=0.011 Score=30.63 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.+.++|++|+|||||++-|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.01 E-value=0.013 Score=30.24 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.00 E-value=0.019 Score=29.19 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=19.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8739999769999479999999299999
Q 000517 196 PGRMTLLLGPPGCGKSTFLKALSGNLDP 223 (1449)
Q Consensus 196 pG~lt~ILGpsGSGKSTLL~aLaG~l~~ 223 (1449)
.|.+.++=|+-||||||+.+.|+-++..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.99 E-value=0.015 Score=29.80 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=22.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 37829999657999744798424099
Q 000517 885 RPGVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 885 ~~Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
+.|.+++|-|+-||||||+.+.|+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98059999899888999999999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.96 E-value=0.017 Score=29.51 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.93 E-value=0.016 Score=29.76 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.+++++|.+|+|||||.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.021 Score=28.93 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.85 E-value=0.015 Score=29.88 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996579997447984240997
Q 000517 890 TALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 890 ~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
+.++|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=0.027 Score=28.26 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999947999999929999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.+++|.+|+|||||++.+.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999899299999999972867
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.82 E-value=0.014 Score=29.98 Aligned_cols=21 Identities=43% Similarity=0.691 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.81 E-value=0.015 Score=29.81 Aligned_cols=20 Identities=25% Similarity=0.669 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99976999947999999929
Q 000517 200 TLLLGPPGCGKSTFLKALSG 219 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG 219 (1449)
.+|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999971
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.018 Score=29.42 Aligned_cols=21 Identities=24% Similarity=0.638 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.80 E-value=0.012 Score=30.47 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|++|+|||||++.+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999887338
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.79 E-value=0.017 Score=29.57 Aligned_cols=153 Identities=18% Similarity=0.127 Sum_probs=76.6
Q ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 03577378299996579997447984240997-78704789999692274000133489970488889999899999999
Q 000517 880 VTGSLRPGVLTALMGVSGAGKTTLMDVLAGRK-TSGYVEGEIKISGYPKVQETFARVSGYCEQTDIHSPNITVEESVIFS 958 (1449)
Q Consensus 880 vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~-~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~ 958 (1449)
+.|-+++|.++.|.|++|+|||+|..-++-.. ..+. ...|+.- ..+..+.....
T Consensus 19 l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~-------------------~~~~is~------e~~~~~~~~~~ 73 (242)
T d1tf7a2 19 CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKE-------------------RAILFAY------EESRAQLLRNA 73 (242)
T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-------------------CEEEEES------SSCHHHHHHHH
T ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCCEEEC------CCCHHHHHHHH
T ss_conf 5689869849999918999999999999999987232-------------------4411212------67999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHCCCEEEEECCCC---CCCHH
Q ss_conf 98304999995789999999999839942112224688888789999999999999-961997889939999---99999
Q 000517 959 AWLRLAPEINSKTKAEFVNEVLETIELDAIKDSLVGIPGVNGLSTEQRKRLTIAVE-LVANPSIIFMDEPTT---GLDAR 1034 (1449)
Q Consensus 959 a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~-L~~~p~il~lDEPTs---gLD~~ 1034 (1449)
..+. .+.. +. ...+.....+... ......+.- -.|... --.+|.+++.|--+. +.+..
T Consensus 74 ~~~~----~~~~-------~~-~~~~~~~~~~~~~-----~~~~~~~~~-~~i~~~i~~~~~~~vviDs~~~~~~~~~~~ 135 (242)
T d1tf7a2 74 YSWG----MDFE-------EM-ERQNLLKIVCAYP-----ESAGLEDHL-QIIKSEINDFKPARIAIDSLSALARGVSNN 135 (242)
T ss_dssp HTTS----CCHH-------HH-HHTTSEEECCCCG-----GGSCHHHHH-HHHHHHHHTTCCSEEEEECHHHHTSSSCHH
T ss_pred HHCC----CCHH-------HH-HHCCCEEEEEEEC-----CHHHHHHHH-HHHHHHHHHCCCCEEEEECCHHHHCCCCHH
T ss_conf 9829----9869-------98-5458617997300-----010179999-999999984088533220431430489999
Q ss_pred HHHHHHHHHHHHH-HCCCEEEEEECCC---------CHHHHHHCCEEEEEE
Q ss_conf 9999999999999-6699899993585---------299998608398990
Q 000517 1035 AAAIVMRAVKNIV-NTGRTIVCTIHQP---------SIDIFEAFDELILLK 1075 (1449)
Q Consensus 1035 ~~~~i~~~l~~l~-~~g~tvi~t~Hqp---------s~~i~~~fD~illl~ 1075 (1449)
.....+..+.+++ +.+.+++++.|.. +..+....|.++.|.
T Consensus 136 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 136 AFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 999999999999998698399998567512554457764046421699999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.78 E-value=0.016 Score=29.75 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999657999744798424099
Q 000517 890 TALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 890 ~ai~G~sGaGKTTLl~~Lagr 910 (1449)
+.|+|++||||||+.+.|+.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999889999989999999998
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.77 E-value=0.019 Score=29.18 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299996579997447984240997
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
-.++++|.+|+|||||++-|.+..
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999989899999996688
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.76 E-value=0.017 Score=29.59 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|.+|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998993999999999719
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.75 E-value=0.0096 Score=31.10 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.75 E-value=0.021 Score=29.00 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=27.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 37829999657999744798424099778704789999692
Q 000517 885 RPGVLTALMGVSGAGKTTLMDVLAGRKTSGYVEGEIKISGY 925 (1449)
Q Consensus 885 ~~Ge~~ai~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~g~ 925 (1449)
+.|.++-+.|.||||||||-+.|+.+.......-.+.++|.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD 62 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 62 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 99869999899999989999999988777427508997536
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.75 E-value=0.038 Score=27.33 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997699994799999992999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
-+.|+|-|.+|||||+++|++--
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 48888999998899999997799
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.74 E-value=0.017 Score=29.46 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299996579997447984240997
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++.|.|++||||||+.+.|+.+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998989989899999999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.72 E-value=0.025 Score=28.42 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=18.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999976999947999999929999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.+.+++||+|+||||.+-=||-++.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999989999998999999999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.72 E-value=0.015 Score=29.79 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.016 Score=29.68 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990889999999719
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.70 E-value=0.016 Score=29.77 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+|+|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999739
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.022 Score=28.76 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=13.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399997699994799999992999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+..|+||.++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.61 E-value=0.018 Score=29.38 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.57 E-value=0.019 Score=29.26 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=25.0
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 3577378299996579997447984240
Q 000517 881 TGSLRPGVLTALMGVSGAGKTTLMDVLA 908 (1449)
Q Consensus 881 s~~i~~Ge~~ai~G~sGaGKTTLl~~La 908 (1449)
.|-+++|.++.|.|++|+|||++.--++
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6997689799998899887889999999
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.54 E-value=0.014 Score=29.98 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+++|+||+|||||++.+.+..
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999987899999984488
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.52 E-value=0.013 Score=30.27 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|.+|+|||||++.|.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994999999999709
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.51 E-value=0.019 Score=29.17 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 2999965799974479842409
Q 000517 888 VLTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lag 909 (1449)
-++||.|++||||||+.+.|..
T Consensus 4 ~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989887789999999998
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.50 E-value=0.017 Score=29.48 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=14.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999976999947999999929
Q 000517 199 MTLLLGPPGCGKSTFLKALSG 219 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG 219 (1449)
-.+|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.46 E-value=0.021 Score=28.90 Aligned_cols=22 Identities=41% Similarity=0.592 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.+.|+|++||||||+.+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999879999999998
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.06 Score=26.07 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++++|.+|+|||||++-+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.43 E-value=0.05 Score=26.58 Aligned_cols=34 Identities=29% Similarity=0.235 Sum_probs=26.3
Q ss_pred EECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 30020357737829999657999744798424099
Q 000517 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 876 iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.+|.....+ .|.=+.+.|+||+|||||...|..+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 178999999-9999999818999989999999985
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.36 E-value=0.018 Score=29.37 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99976999947999999929
Q 000517 200 TLLLGPPGCGKSTFLKALSG 219 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG 219 (1449)
.+++|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999099999999970
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.36 E-value=0.023 Score=28.76 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.35 E-value=0.025 Score=28.44 Aligned_cols=72 Identities=10% Similarity=0.097 Sum_probs=38.3
Q ss_pred HCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCEE-EEEECCEEEEECCHHH
Q ss_conf 1899498996899999-99999999999999987179689999825900488522719-9981894999459555
Q 000517 358 VGPTKALFMDEITNGL-DSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDDI-ILMAEGKIVYHGPQDH 430 (1449)
Q Consensus 358 v~~~~vlllDEpTsGL-DS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~I-ilL~~G~ivy~Gp~~~ 430 (1449)
+...+++++|++-.=. +..+...+...+..... .++.+|++-..|+.+.-..-+++ --|+.|-++.--|.++
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p~d~ 168 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNK 168 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCCCHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCCCHHCCCCCHHHHHHHHCCEEEEECCCCH
T ss_conf 7621301011265505865778899999998763-1663899548751001343267888861856899788827
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.30 E-value=0.018 Score=29.31 Aligned_cols=24 Identities=46% Similarity=0.642 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299996579997447984240997
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
-.++++|++|+|||||++-+.+..
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999989999999996487
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.19 E-value=0.032 Score=27.82 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=9.6
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9997699994799999992
Q 000517 200 TLLLGPPGCGKSTFLKALS 218 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLa 218 (1449)
.+|.|++||||||+.+.|.
T Consensus 5 IgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9988888788999999999
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.16 E-value=0.047 Score=26.76 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=9.9
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999769999479999999
Q 000517 200 TLLLGPPGCGKSTFLKAL 217 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aL 217 (1449)
.+|+|+.|||||||..+|
T Consensus 9 i~i~gh~~~GKTtL~e~l 26 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERI 26 (276)
T ss_dssp EEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHH
T ss_conf 999958989989999999
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.16 E-value=0.046 Score=26.79 Aligned_cols=18 Identities=44% Similarity=0.726 Sum_probs=11.4
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999769999479999999
Q 000517 200 TLLLGPPGCGKSTFLKAL 217 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aL 217 (1449)
.+|+|+.|||||||..+|
T Consensus 5 v~iiGh~~~GKTtL~e~l 22 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEAL 22 (267)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999948898099999999
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.14 E-value=0.022 Score=28.87 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.-+.+.||+|+|||.|.+.||..
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 66999899998888999998621
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.034 Score=27.67 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99997699994799999992
Q 000517 199 MTLLLGPPGCGKSTFLKALS 218 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLa 218 (1449)
+.+|.|++||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.10 E-value=0.024 Score=28.58 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999769999479999999299
Q 000517 199 MTLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~ 220 (1449)
-.+|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.10 E-value=0.02 Score=29.05 Aligned_cols=26 Identities=35% Similarity=0.649 Sum_probs=21.5
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 737829999657999744798424099
Q 000517 884 LRPGVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 884 i~~Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
+|+- .+||+|...||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=93.10 E-value=0.02 Score=29.03 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHH
Q ss_conf 99976999947999999
Q 000517 200 TLLLGPPGCGKSTFLKA 216 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~a 216 (1449)
++|.|+|||||||.|-.
T Consensus 17 ~lI~g~aGTGKTt~l~~ 33 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITN 33 (306)
T ss_dssp EEECCCTTSCHHHHHHH
T ss_pred EEEEEECCCCHHHHHHH
T ss_conf 89996288438999999
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.09 E-value=0.024 Score=28.64 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.+.|+|++||||||+-+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999979999999999
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.06 E-value=0.025 Score=28.47 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=16.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999769999479999999299
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~ 220 (1449)
-+++|-|.-||||||||+-|...
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred CEEEEEECCCCCHHHHHHHHHHC
T ss_conf 88998648889999999999856
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.04 E-value=0.032 Score=27.83 Aligned_cols=21 Identities=14% Similarity=0.403 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|.+|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992989999999739
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.03 E-value=0.025 Score=28.45 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.+.++|++||||||..+.|+-+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=92.96 E-value=0.035 Score=27.51 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=16.1
Q ss_pred CEEEEEECCCCCCHHHHHHH
Q ss_conf 73999976999947999999
Q 000517 197 GRMTLLLGPPGCGKSTFLKA 216 (1449)
Q Consensus 197 G~lt~ILGpsGSGKSTLL~a 216 (1449)
+.+++|-||||+||||++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHHH
T ss_conf 88599976898875216999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.93 E-value=0.037 Score=27.43 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=10.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+|-|+.||||||+++.|+.++
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998998789999999999999
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.91 E-value=0.024 Score=28.58 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.87 E-value=0.049 Score=26.63 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=12.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|.+|+|||||++.+.+.
T Consensus 8 i~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999719
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.85 E-value=0.058 Score=26.16 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=14.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999947999999929999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
=.+++|+..+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 899997248869999999970412
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.019 Score=29.23 Aligned_cols=20 Identities=40% Similarity=0.614 Sum_probs=9.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99976999947999999929
Q 000517 200 TLLLGPPGCGKSTFLKALSG 219 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG 219 (1449)
.+++|++|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999088999999984
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.029 Score=28.05 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99976999947999999929
Q 000517 200 TLLLGPPGCGKSTFLKALSG 219 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG 219 (1449)
.+|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999398999999982
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.82 E-value=0.0064 Score=32.19 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++++|.+++|||||++.|.|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=92.82 E-value=0.027 Score=28.25 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
-.+.|+|++||||||+-+.|+.+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 16999889999879999999999
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.82 E-value=0.031 Score=27.85 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997699994799999992999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
-.+|+|.+|+|||||++.+.+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=92.74 E-value=0.024 Score=28.60 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=19.3
Q ss_pred CCCCCCEEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 321224156883873999976999947999999
Q 000517 184 INILNHVSGILKPGRMTLLLGPPGCGKSTFLKA 216 (1449)
Q Consensus 184 ~~IL~~VSg~i~pG~lt~ILGpsGSGKSTLL~a 216 (1449)
..++++.. |. ++|.|+|||||||.|-.
T Consensus 17 ~~~v~~~~-----g~-~lV~g~aGSGKTt~l~~ 43 (318)
T d1pjra1 17 QEAVRTTE-----GP-LLIMAGAGSGKTRVLTH 43 (318)
T ss_dssp HHHHHCCS-----SC-EEEEECTTSCHHHHHHH
T ss_pred HHHHHCCC-----CC-EEEEECCCCCHHHHHHH
T ss_conf 99982999-----99-89995298668999999
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.74 E-value=0.047 Score=26.75 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=16.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 387399997699994799999992999
Q 000517 195 KPGRMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 195 ~pG~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
+||.+.+|-|+=|||||||.+.++..+
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 998299996687765889999987642
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.72 E-value=0.03 Score=27.96 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+|+|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.64 E-value=0.033 Score=27.68 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7829999657999744798424099
Q 000517 886 PGVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 886 ~Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.|..+++-|+-||||||+.+.|+.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9878999899888799999999999
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.64 E-value=0.028 Score=28.13 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+|+|.+|+|||||++.+.+.
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997996989999999739
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.64 E-value=0.034 Score=27.62 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 782999965799974479842409977
Q 000517 886 PGVLTALMGVSGAGKTTLMDVLAGRKT 912 (1449)
Q Consensus 886 ~Ge~~ai~G~sGaGKTTLl~~Lagr~~ 912 (1449)
.|.++++-|+-||||||+.+.|+.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.61 E-value=0.039 Score=27.23 Aligned_cols=21 Identities=33% Similarity=0.552 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+|+|.+|+|||||++.+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.59 E-value=0.03 Score=27.98 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99976999947999999929
Q 000517 200 TLLLGPPGCGKSTFLKALSG 219 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG 219 (1449)
.+++|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.56 E-value=0.035 Score=27.55 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=21.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7829999657999744798424099
Q 000517 886 PGVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 886 ~Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.+..+.|.|++|+|||||++-++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5987999869998299999999997
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.55 E-value=0.032 Score=27.80 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|.+|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.45 E-value=0.031 Score=27.89 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999997197
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.42 E-value=0.034 Score=27.63 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99976999947999999929
Q 000517 200 TLLLGPPGCGKSTFLKALSG 219 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG 219 (1449)
.+|+|.+|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899588999999972
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.41 E-value=0.041 Score=27.09 Aligned_cols=18 Identities=50% Similarity=0.711 Sum_probs=10.8
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999769999479999999
Q 000517 200 TLLLGPPGCGKSTFLKAL 217 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aL 217 (1449)
.+++|.+|+|||||++-+
T Consensus 9 illlG~~~vGKTsll~~~ 26 (221)
T d1azta2 9 LLLLGAGESGKSTIVKQM 26 (221)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999889999989
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.39 E-value=0.047 Score=26.72 Aligned_cols=36 Identities=42% Similarity=0.697 Sum_probs=27.8
Q ss_pred CEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 323002035773782999965799974479842409977
Q 000517 874 LRLLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGRKT 912 (1449)
Q Consensus 874 ~~iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr~~ 912 (1449)
..+|+.++. |=.+++|+|+-++|||||||.|.|...
T Consensus 22 l~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 22 LKILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp HHHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred HHHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999970799---879999889999979999999809987
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.39 E-value=0.04 Score=27.21 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999769999479999999299
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~ 220 (1449)
+-++|+|++|||||++++.+.-.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~ 73 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYT 73 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHH
T ss_conf 65899907999689999999999
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.29 E-value=0.034 Score=27.60 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.+||+|-+.+|||||++.|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.27 E-value=0.045 Score=26.85 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999859
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.26 E-value=0.044 Score=26.95 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=37.1
Q ss_pred CCCEEEEECCCC--CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHH
Q ss_conf 997889939999--999999999999999999669989999358529999860839899069599994488888157999
Q 000517 1018 NPSIIFMDEPTT--GLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIE 1095 (1449)
Q Consensus 1018 ~p~il~lDEPTs--gLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~~~~~~~~~~ 1095 (1449)
.+.++++||.-. .-+......+++.. ......++++...........+ .+..+.+.+.|+. ..++..
T Consensus 123 ~~~vi~ide~~~~~~~~~~~~~~~~~~~---~~~~~~ii~i~~~~~~~~~~~l------~~~~~~i~f~~~~--~~~i~~ 191 (253)
T d1sxja2 123 KHFVIIMDEVDGMSGGDRGGVGQLAQFC---RKTSTPLILICNERNLPKMRPF------DRVCLDIQFRRPD--ANSIKS 191 (253)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHH---HHCSSCEEEEESCTTSSTTGGG------TTTSEEEECCCCC--HHHHHH
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCCCCC------CCEEEEEECCCCC--HHHHHH
T ss_conf 5137776301111100013467776540---1234222111355552113532------4403653114531--467889
Q ss_pred HHHCC
Q ss_conf 98408
Q 000517 1096 YFEGI 1100 (1449)
Q Consensus 1096 yF~~~ 1100 (1449)
+.+.+
T Consensus 192 ~l~~i 196 (253)
T d1sxja2 192 RLMTI 196 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.24 E-value=0.041 Score=27.12 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965799974479842409
Q 000517 889 LTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lag 909 (1449)
++||.|..||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.24 E-value=0.059 Score=26.10 Aligned_cols=34 Identities=26% Similarity=0.165 Sum_probs=24.9
Q ss_pred EECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 30020357737829999657999744798424099
Q 000517 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 876 iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.||.... .-.|.=+.+.|+||+|||||.-.|..+
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEEE-EECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 2899999-999999999808999989999999985
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.22 E-value=0.031 Score=27.87 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.16 E-value=0.037 Score=27.40 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.+.|+|+.||||||+.+.|+.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.14 E-value=0.047 Score=26.76 Aligned_cols=18 Identities=61% Similarity=0.875 Sum_probs=10.7
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999769999479999999
Q 000517 200 TLLLGPPGCGKSTFLKAL 217 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aL 217 (1449)
.+++|.+|+|||||++-+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999989999988
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.13 E-value=0.043 Score=26.98 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 2999965799974479842409
Q 000517 888 VLTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lag 909 (1449)
-++||-|+.|||||||-+.|..
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8998379987889999999999
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.09 E-value=0.04 Score=27.17 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|.+|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999709
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.08 E-value=0.057 Score=26.20 Aligned_cols=28 Identities=39% Similarity=0.637 Sum_probs=23.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3873999976999947999999929999
Q 000517 195 KPGRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 195 ~pG~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
+|.-..+++||+|+|||.+.+.||-.+.
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 8766999978886248999999999835
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.07 E-value=0.051 Score=26.51 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=23.6
Q ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 035773782999965799974479842409
Q 000517 880 VTGSLRPGVLTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 880 vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lag 909 (1449)
.=.-+-.|+..+|.|++|+|||||+..++.
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ECCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 125645787556867999887899999999
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.01 E-value=0.048 Score=26.68 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=29.8
Q ss_pred CCCC-EE-EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1224-15-6883873999976999947999999929999
Q 000517 186 ILNH-VS-GILKPGRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 186 IL~~-VS-g~i~pG~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.|+. +. |-+++|++|.+.||||||||||...++....
T Consensus 41 ~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 41 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 999975679966735899805777478999999999987
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.97 E-value=0.038 Score=27.34 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++++|.+|+|||||++-+.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=91.96 E-value=0.054 Score=26.36 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=32.4
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCE
Q ss_conf 99918994989968999999999999999999998717968999982590048852271
Q 000517 355 EMIVGPTKALFMDEITNGLDSSTAYQIIACIQQLVHITDSTALISLLQPAPETFDLFDD 413 (1449)
Q Consensus 355 eaLv~~~~vlllDEpTsGLDS~ta~~I~~~Lr~l~~~~~~Tviisl~Qp~~ei~~lFD~ 413 (1449)
.+|=.+|++++..|+. |..|+...++ .+ ..|..|+.++|..+ .+...++
T Consensus 222 ~~lR~dPDvi~igEiR---d~~ta~~a~~----aa-~tGhlV~tTlHa~~--a~~~~~R 270 (401)
T d1p9ra_ 222 AILRQDPDVVMVGEIR---DLETAQIAVQ----AS-LTGHLVMSTLHTNT--AVGAVTR 270 (401)
T ss_dssp HHGGGCCSEEEESCCC---SHHHHHHHHH----HH-HTTCEEEEEECCSS--SHHHHHH
T ss_pred HHHHHCCCEEEECCCC---CHHHHHHHHH----HH-HCCCEEEEEECCCC--HHHHHHH
T ss_conf 9984138889845768---7599999999----97-24985899833676--6766543
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.87 E-value=0.042 Score=27.06 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.+.|.||+|+||||+.++++..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999789997487999999999
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.87 E-value=0.05 Score=26.60 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.84 E-value=0.056 Score=26.28 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999947999999929999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
=.+|+||||.|||++...|+.++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.74 E-value=0.041 Score=27.11 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+|+|.+|+|||||++.+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996999999999719
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.69 E-value=0.044 Score=26.93 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
-.++++|.+|+|||||++-+.+.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999999999889999887338
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.62 E-value=0.052 Score=26.47 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++-+.+.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999829
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.61 E-value=0.054 Score=26.35 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++++|.-+||||||++.|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.59 E-value=0.068 Score=25.72 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99976999947999999929
Q 000517 200 TLLLGPPGCGKSTFLKALSG 219 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG 219 (1449)
.+++|+++||||||+++|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99994789849999999999
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.52 E-value=0.049 Score=26.65 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999657999744798424099
Q 000517 890 TALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 890 ~ai~G~sGaGKTTLl~~Lagr 910 (1449)
+.+.||+|+||||+.++|+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 898799997388999999850
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.51 E-value=0.039 Score=27.28 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++-+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.44 E-value=0.062 Score=25.96 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.38 E-value=0.056 Score=26.27 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965799974479842409
Q 000517 889 LTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lag 909 (1449)
++||.|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.36 E-value=0.055 Score=26.29 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=20.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 829999657999744798424099
Q 000517 887 GVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 887 Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
-.+++++||+|+||||.+-=||.+
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 989999899999889999999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.35 E-value=0.06 Score=26.10 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++++|.-.||||||++.|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.31 E-value=0.049 Score=26.62 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++++|.+|+|||||++-+.+..
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~~ 26 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNKK 26 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999919899999997198
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.30 E-value=0.045 Score=26.84 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++-+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=91.29 E-value=0.089 Score=24.99 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=22.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999976999947999999929999
Q 000517 196 PGRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 196 pG~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.+--.+|+|-|-+|||||+|+|.|+-.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.26 E-value=0.063 Score=25.96 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++++|.+|+|||||++-+.+..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~ 26 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGT 26 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989979899999997099
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.09 E-value=0.076 Score=25.45 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.+.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.08 E-value=0.088 Score=25.01 Aligned_cols=34 Identities=29% Similarity=0.136 Sum_probs=25.1
Q ss_pred EECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 30020357737829999657999744798424099
Q 000517 876 LLYDVTGSLRPGVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 876 iL~~vs~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
-+|. +...-.|.=+.+.|+||+|||||.-.|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.08 E-value=0.066 Score=25.83 Aligned_cols=21 Identities=24% Similarity=0.705 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|.+|+|||||++.+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999995989999999729
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.05 E-value=0.073 Score=25.53 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|.+|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.03 E-value=0.051 Score=26.54 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
-.++|+|.+|+|||||++-+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.00 E-value=0.065 Score=25.84 Aligned_cols=24 Identities=38% Similarity=0.408 Sum_probs=20.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 829999657999744798424099
Q 000517 887 GVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 887 Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
-.+++++||+|+||||.+-=||.+
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 989999899999989999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.94 E-value=0.29 Score=21.80 Aligned_cols=24 Identities=38% Similarity=0.583 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 829999657999744798424099
Q 000517 887 GVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 887 Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
+.+++++||+|+||||.+-=||.+
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 779999899999889999999999
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.92 E-value=0.078 Score=25.36 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7829999657999744798424099
Q 000517 886 PGVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 886 ~Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
|.....++||+|+|||.|.+.||..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7658999778750069999999863
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=90.83 E-value=0.071 Score=25.60 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99976999947999999929
Q 000517 200 TLLLGPPGCGKSTFLKALSG 219 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG 219 (1449)
.+++|++.+|||||+++|.+
T Consensus 6 i~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99995889809999999999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.83 E-value=0.07 Score=25.67 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
+++|-|.-||||||+++.|+.+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.78 E-value=0.065 Score=25.85 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.78 E-value=0.078 Score=25.37 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++-+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.76 E-value=0.09 Score=24.97 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999769999479999999299999
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGNLDP 223 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~l~~ 223 (1449)
++.++=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.75 E-value=0.057 Score=26.23 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++++|.+|+|||||++-+.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999908899999998498
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.74 E-value=0.083 Score=25.20 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=24.2
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 773782999965799974479842409
Q 000517 883 SLRPGVLTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 883 ~i~~Ge~~ai~G~sGaGKTTLl~~Lag 909 (1449)
..+||.+++|-|+=||||||+.+.++.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 579982999966877658899999876
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.67 E-value=0.07 Score=25.65 Aligned_cols=29 Identities=24% Similarity=0.595 Sum_probs=24.7
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88387399997699994799999992999
Q 000517 193 ILKPGRMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 193 ~i~pG~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.+-.|+-.+|.|++|+|||||+..++...
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 64578755686799988789999999977
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.66 E-value=0.068 Score=25.74 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.64 E-value=0.066 Score=25.82 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
-+.++||+|+|||-|.+.||+..
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 47998999988999999999873
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.62 E-value=0.063 Score=25.96 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++++|.+|+|||||++-+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.57 E-value=0.1 Score=24.62 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999947999999929999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
..++-||||+||||+..+++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 598888998758999999999846
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.48 E-value=0.06 Score=26.07 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++-+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.45 E-value=0.073 Score=25.55 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|..|+|||||++-+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.40 E-value=0.076 Score=25.41 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.+++++||+|+||||.+-=||.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999989999999999
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=90.30 E-value=0.073 Score=25.55 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999657999744798424099
Q 000517 890 TALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 890 ~ai~G~sGaGKTTLl~~Lagr 910 (1449)
+.+-||+|.||||+.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 898897998788899999998
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.27 E-value=0.11 Score=24.30 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999947999999929999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
-.++-||+|+||||+..+++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 798889998759999999998210
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.21 E-value=0.065 Score=25.84 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.20 E-value=0.06 Score=26.08 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++-+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.20 E-value=0.072 Score=25.57 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++|+|.+|+|||||++-+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.17 E-value=0.12 Score=24.07 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=13.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHC
Q ss_conf 8299996579997447984240
Q 000517 887 GVLTALMGVSGAGKTTLMDVLA 908 (1449)
Q Consensus 887 Ge~~ai~G~sGaGKTTLl~~La 908 (1449)
..+++|.|..|.|||||...+.
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~ 65 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQAL 65 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 4089997799788899999999
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.13 E-value=0.088 Score=25.02 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.-+.+.||+|+|||++.+.||..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 07998896999889999998620
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.11 E-value=0.064 Score=25.91 Aligned_cols=29 Identities=38% Similarity=0.885 Sum_probs=24.6
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83873999976999947999999929999
Q 000517 194 LKPGRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 194 i~pG~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
+++.+-.+|-||||+|||+|.+++|+.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99887578878998763047788787718
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.09 E-value=0.12 Score=24.10 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=18.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 2999965799974479842409
Q 000517 888 VLTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lag 909 (1449)
.++||.|.-||||||..+.|+.
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.99 E-value=0.096 Score=24.78 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299996579997447984240997
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
..+.|.||+|.||||+++.++...
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 816888989998999999999997
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.99 E-value=0.086 Score=25.09 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
-+|++|--.+|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.98 E-value=0.062 Score=25.99 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=89.91 E-value=0.088 Score=25.03 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299996579997447984240997
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
-.+.++|++|+|||||++-+.+..
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999987899999984488
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.90 E-value=0.052 Score=26.49 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
-.+||+|-+.+|||||+++|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 37999789999899999999778
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.86 E-value=0.085 Score=25.14 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999657999744798424099
Q 000517 890 TALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 890 ~ai~G~sGaGKTTLl~~Lagr 910 (1449)
..+-||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.84 E-value=0.094 Score=24.85 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++-+.+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.75 E-value=0.099 Score=24.69 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++-+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.51 E-value=0.081 Score=25.24 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++++|.+|+|||||++-+.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989909899999998499
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.42 E-value=0.098 Score=24.72 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.+.++|.+|+|||||++-+.+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.41 E-value=0.081 Score=25.27 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299996579997447984240997
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
-.++++|.+|+|||||++-+.+..
T Consensus 6 iKivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 999999999979999999997498
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.30 E-value=0.1 Score=24.63 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++-+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.27 E-value=0.094 Score=24.84 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++-+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=89.21 E-value=0.096 Score=24.78 Aligned_cols=20 Identities=50% Similarity=0.732 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996579997447984240
Q 000517 889 LTALMGVSGAGKTTLMDVLA 908 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~La 908 (1449)
-+||+|..|+|||||.+.|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999488980999999999
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.21 E-value=0.12 Score=24.26 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996579997447984240
Q 000517 889 LTALMGVSGAGKTTLMDVLA 908 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~La 908 (1449)
.+.++|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79999899998899999895
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.19 E-value=0.12 Score=24.21 Aligned_cols=23 Identities=30% Similarity=0.707 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999947999999929999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.+|+||||.|||++...||.++.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39983587544799999999998
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.05 E-value=0.12 Score=24.15 Aligned_cols=21 Identities=29% Similarity=0.533 Sum_probs=18.4
Q ss_pred EEEEEECCCCCCHHHHHHHHC
Q ss_conf 299996579997447984240
Q 000517 888 VLTALMGVSGAGKTTLMDVLA 908 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~La 908 (1449)
-.+.++|.+|+|||||++-+.
T Consensus 3 iKivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899999899999899999884
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.98 E-value=0.11 Score=24.43 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.89 E-value=0.12 Score=24.11 Aligned_cols=21 Identities=48% Similarity=0.599 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
++++|.+|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999999679
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.86 E-value=0.11 Score=24.39 Aligned_cols=72 Identities=19% Similarity=0.288 Sum_probs=38.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99788993999999999999999999999966998999935852999986083989906959999448888815799998
Q 000517 1018 NPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYF 1097 (1449)
Q Consensus 1018 ~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~~~~~~~~~~yF 1097 (1449)
+..++++||.-. +...+...+...+... .....++++.++.+. +... +.++ -+++.+.|+. ..++..|.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~-~~~~~~i~~~~~~~~-i~~~-----l~sr-~~~i~~~~~~--~~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELY-SNSTRFAFACNQSNK-IIEP-----LQSQ-CAILRYSKLS--DEDVLKRL 169 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHT-TTTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCC--HHHHHHHH
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCC-CCCEEEEECCCCHHH-HHHH-----HHHH-HHHHHHCCCC--HHHHHHHH
T ss_conf 359999824432-3215778775201123-333366531474302-1067-----8877-7776531332--24567888
Q ss_pred HCC
Q ss_conf 408
Q 000517 1098 EGI 1100 (1449)
Q Consensus 1098 ~~~ 1100 (1449)
..+
T Consensus 170 ~~i 172 (224)
T d1sxjb2 170 LQI 172 (224)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 777
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=88.82 E-value=0.15 Score=23.65 Aligned_cols=21 Identities=33% Similarity=0.320 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+++|+..+|||||++.|...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.75 E-value=0.11 Score=24.48 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=88.74 E-value=0.12 Score=24.17 Aligned_cols=21 Identities=33% Similarity=0.833 Sum_probs=17.6
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 997699994799999992999
Q 000517 201 LLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 201 ~ILGpsGSGKSTLL~aLaG~l 221 (1449)
+|+|+||.|||++...||.++
T Consensus 47 llvG~~GvGKtaiv~~la~~i 67 (387)
T d1qvra2 47 VLIGEPGVGKTAIVEGLAQRI 67 (387)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 687999988999999999999
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.71 E-value=0.13 Score=23.91 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=40.3
Q ss_pred HHCCCEEEEECCCCCCCHHHH------HHHHHHHHHHHH-----CCCEEEEEECCCCHHHHHHCCEEEEEEC--CCEEEE
Q ss_conf 619978899399999999999------999999999996-----6998999935852999986083989906--959999
Q 000517 1016 VANPSIIFMDEPTTGLDARAA------AIVMRAVKNIVN-----TGRTIVCTIHQPSIDIFEAFDELILLKT--GGRIIY 1082 (1449)
Q Consensus 1016 ~~~p~il~lDEPTsgLD~~~~------~~i~~~l~~l~~-----~g~tvi~t~Hqps~~i~~~fD~illl~~--gG~~~y 1082 (1449)
...|.|||+||--+=...+.. ..+...+..... .+..||+|+.+|.. .|.-++ .. =.+.++
T Consensus 95 ~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~-----ld~al~-r~gRfd~~i~ 168 (258)
T d1e32a2 95 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS-----IDPALR-RFGRFDREVD 168 (258)
T ss_dssp HTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGG-----SCGGGT-STTSSCEEEE
T ss_pred HCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCC-----CCHHHH-HCCCCCCEEE
T ss_conf 6499499852111322578877770689998775001101234688117975799310-----252454-2463023237
Q ss_pred ECCCCCCHHHHHHHHHCC
Q ss_conf 448888815799998408
Q 000517 1083 CGPLGKHSSQVIEYFEGI 1100 (1449)
Q Consensus 1083 ~G~~~~~~~~~~~yF~~~ 1100 (1449)
.+++.. ..-...|+..
T Consensus 169 ~~~P~~--~~R~~il~~~ 184 (258)
T d1e32a2 169 IGIPDA--TGRLEILQIH 184 (258)
T ss_dssp CCCCCH--HHHHHHHHHT
T ss_pred CCCCCH--HHHHHHHHHH
T ss_conf 899998--8999873220
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=88.71 E-value=0.14 Score=23.73 Aligned_cols=23 Identities=43% Similarity=0.834 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99976999947999999929999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.+.+||+|+|||-|.++||..++
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 24418998637899999986443
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=88.60 E-value=0.13 Score=23.92 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++-+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.55 E-value=0.12 Score=24.14 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++|+|.+|+|||||++-+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.50 E-value=0.2 Score=22.81 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=23.8
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 7378299996579997447984240997
Q 000517 884 LRPGVLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 884 i~~Ge~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.+|.--+|++|.-.||||||++.|.|..
T Consensus 5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 5 VQPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9997089999724886999999997041
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.24 E-value=0.11 Score=24.42 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
-.++|+|-+.+|||||++.|++-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.16 E-value=0.15 Score=23.57 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.15 E-value=0.15 Score=23.54 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965799974479842409
Q 000517 889 LTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lag 909 (1449)
.++++|.+|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.11 E-value=0.15 Score=23.60 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=88.04 E-value=0.17 Score=23.18 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999769999479999999299999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLDP 223 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~~ 223 (1449)
...|=|+-|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999888667899999999998656
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.00 E-value=0.13 Score=24.02 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996579997447984240
Q 000517 889 LTALMGVSGAGKTTLMDVLA 908 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~La 908 (1449)
-+||+|..|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.95 E-value=0.24 Score=22.31 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=14.8
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 77378299996579997447984240
Q 000517 883 SLRPGVLTALMGVSGAGKTTLMDVLA 908 (1449)
Q Consensus 883 ~i~~Ge~~ai~G~sGaGKTTLl~~La 908 (1449)
.+-.|+..+|.|++|.|||+|+.-++
T Consensus 64 pigkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 64 PYAKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 63678877766799989899999999
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.78 E-value=0.12 Score=24.14 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.+.++|.+|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.75 E-value=0.17 Score=23.28 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 782999965799974479842409
Q 000517 886 PGVLTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 886 ~Ge~~ai~G~sGaGKTTLl~~Lag 909 (1449)
|---+|++|..++|||||++.|..
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 971999994789849999999999
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=87.68 E-value=0.21 Score=22.68 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=23.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 3782999965799974479842409977
Q 000517 885 RPGVLTALMGVSGAGKTTLMDVLAGRKT 912 (1449)
Q Consensus 885 ~~Ge~~ai~G~sGaGKTTLl~~Lagr~~ 912 (1449)
..+-.++++|.+.+|||||+|.|.|++.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 7752789986675443555425426615
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.65 E-value=0.14 Score=23.72 Aligned_cols=30 Identities=33% Similarity=0.465 Sum_probs=25.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 688387399997699994799999992999
Q 000517 192 GILKPGRMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 192 g~i~pG~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
|=+++|++|.+.||||||||||+..++...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~ 84 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANA 84 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 986663369996488748899999999987
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=87.47 E-value=0.09 Score=24.96 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
++.+.||+|.||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8996789998999999999999
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.16 E-value=0.17 Score=23.17 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
.++++|.+|+|||||++-+.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.16 E-value=0.16 Score=23.33 Aligned_cols=22 Identities=45% Similarity=0.600 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997699994799999992999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l 221 (1449)
.++.||||+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.08 E-value=0.19 Score=22.99 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=26.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 57737829999657999744798424099
Q 000517 882 GSLRPGVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 882 ~~i~~Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
|-++.|.+|-+-|++|+|||||.-.++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98667547898058765227999999999
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.02 E-value=0.14 Score=23.68 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
-.++++|.+|+|||||++-+.+.
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=86.98 E-value=0.16 Score=23.38 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=15.8
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 8739999769999479999
Q 000517 196 PGRMTLLLGPPGCGKSTFL 214 (1449)
Q Consensus 196 pG~lt~ILGpsGSGKSTLL 214 (1449)
.|..++..|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEECCCCCCCCCCC
T ss_conf 9988999736879814221
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.92 E-value=0.17 Score=23.26 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=39.0
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEE-EEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 978899399999999999999999999996699899-9935852999986083989906959999448888815799998
Q 000517 1019 PSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIV-CTIHQPSIDIFEAFDELILLKTGGRIIYCGPLGKHSSQVIEYF 1097 (1449)
Q Consensus 1019 p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi-~t~Hqps~~i~~~fD~illl~~gG~~~y~G~~~~~~~~~~~yF 1097 (1449)
..++++||.- .+.......+.+.+... ...+++ ++.++++ .+... +..+ ...+.+-|+. ..++.++.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~--~~~~~~~~~~~~~~-~i~~~-----i~sr-~~~i~~~~~~--~~~i~~~l 167 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERY--TKNTRFCVLANYAH-KLTPA-----LLSQ-CTRFRFQPLP--QEAIERRI 167 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHT--TTTEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCC--HHHHHHHH
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHC--CCCEEECCCCCCHH-HHHHH-----HHHH-HHHHCCCCCC--CCCCCCCC
T ss_conf 1899996632-00023789999886311--20023201267087-75999-----9988-7540123565--20001102
Q ss_pred HCC
Q ss_conf 408
Q 000517 1098 EGI 1100 (1449)
Q Consensus 1098 ~~~ 1100 (1449)
..+
T Consensus 168 ~~I 170 (227)
T d1sxjc2 168 ANV 170 (227)
T ss_dssp HHH
T ss_pred CCC
T ss_conf 122
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.88 E-value=0.18 Score=23.01 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.+.++|.+|+|||||++-+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=86.75 E-value=0.17 Score=23.22 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999769999479999999
Q 000517 200 TLLLGPPGCGKSTFLKAL 217 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aL 217 (1449)
.+++|+.++|||||+..|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHH
T ss_conf 999952798999999999
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=86.70 E-value=0.21 Score=22.60 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999976999947999999929999
Q 000517 199 MTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 199 lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
...|=|+-||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989867789999999999817
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=86.66 E-value=0.14 Score=23.79 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=15.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7399997699994799999992999
Q 000517 197 GRMTLLLGPPGCGKSTFLKALSGNL 221 (1449)
Q Consensus 197 G~lt~ILGpsGSGKSTLL~aLaG~l 221 (1449)
-....+.||+++|||+|+++|...+
T Consensus 104 ~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1799998589887789999999983
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.65 E-value=0.21 Score=22.66 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999657999744798424099
Q 000517 889 LTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
.++++|.+|+|||||++-+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=86.56 E-value=0.19 Score=22.92 Aligned_cols=20 Identities=30% Similarity=0.657 Sum_probs=16.9
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 38739999769999479999
Q 000517 195 KPGRMTLLLGPPGCGKSTFL 214 (1449)
Q Consensus 195 ~pG~lt~ILGpsGSGKSTLL 214 (1449)
+.|...+..|-||+|||||=
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.27 E-value=0.24 Score=22.26 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=9.3
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999657999744798424
Q 000517 890 TALMGVSGAGKTTLMDVL 907 (1449)
Q Consensus 890 ~ai~G~sGaGKTTLl~~L 907 (1449)
+.++|..|+|||||++-+
T Consensus 5 ivllG~~~vGKTsl~~r~ 22 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQM 22 (195)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999999998889999988
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.22 E-value=0.22 Score=22.57 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 29999657999744798424099
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
..++|=|.-||||||+++.|+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~ 25 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 19999899888599999999998
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.12 E-value=0.24 Score=22.30 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999769999479999999299
Q 000517 198 RMTLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 198 ~lt~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+.+|-|+.||||||..+.|+.+
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.03 E-value=0.21 Score=22.69 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=10.7
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999769999479999999
Q 000517 200 TLLLGPPGCGKSTFLKAL 217 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aL 217 (1449)
.+|+|+.++|||||+.+|
T Consensus 20 I~iiGhvd~GKTTL~d~L 37 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSL 37 (341)
T ss_dssp EEEECCGGGTHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHH
T ss_conf 999968888699999999
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.64 E-value=0.21 Score=22.70 Aligned_cols=24 Identities=42% Similarity=0.603 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 299996579997447984240997
Q 000517 888 VLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 888 e~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
-++.|-|.=|||||||++-|....
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889986488899999999998567
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.62 E-value=0.29 Score=21.72 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=23.7
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8838739999769999479999999299
Q 000517 193 ILKPGRMTLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 193 ~i~pG~lt~ILGpsGSGKSTLL~aLaG~ 220 (1449)
.+-.|+-.+|.|++|+|||||+.-++..
T Consensus 64 pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 64 PYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 6367887776679998989999999998
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=84.85 E-value=0.27 Score=22.00 Aligned_cols=27 Identities=26% Similarity=0.131 Sum_probs=22.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 378299996579997447984240997
Q 000517 885 RPGVLTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 885 ~~Ge~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
+.+..+.+.||+|.|||++...|++..
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 976769998999988899999999985
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.63 E-value=0.3 Score=21.69 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=21.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 37829999657999744798424099
Q 000517 885 RPGVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 885 ~~Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
+|.-...++||+|+|||.|.+.|+..
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~ 76 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAAT 76 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87669999788862489999999998
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.61 E-value=0.28 Score=21.83 Aligned_cols=21 Identities=43% Similarity=0.496 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999769999479999999299
Q 000517 200 TLLLGPPGCGKSTFLKALSGN 220 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~ 220 (1449)
++++|..|+|||||++-+...
T Consensus 5 ivllG~~~vGKTsl~~r~~~~ 25 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKII 25 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998889999988408
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=84.52 E-value=0.17 Score=23.24 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=19.0
Q ss_pred EECCEEEEEECCCCCCHHH-HH-HHH
Q ss_conf 8387399997699994799-99-999
Q 000517 194 LKPGRMTLLLGPPGCGKST-FL-KAL 217 (1449)
Q Consensus 194 i~pG~lt~ILGpsGSGKST-LL-~aL 217 (1449)
+++|+.++|.+|.|||||+ .| .++
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~ 31 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIV 31 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHH
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 64699499997999978799999999
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=84.44 E-value=0.28 Score=21.85 Aligned_cols=20 Identities=40% Similarity=0.728 Sum_probs=17.1
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 38739999769999479999
Q 000517 195 KPGRMTLLLGPPGCGKSTFL 214 (1449)
Q Consensus 195 ~pG~lt~ILGpsGSGKSTLL 214 (1449)
+.|..++..|-||+|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88987999736778812051
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.02 E-value=0.34 Score=21.35 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9997699994799999992
Q 000517 200 TLLLGPPGCGKSTFLKALS 218 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLa 218 (1449)
.+++|+.++|||||...|.
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999478998999999999
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.66 E-value=0.32 Score=21.47 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999965799974479842409
Q 000517 889 LTALMGVSGAGKTTLMDVLAG 909 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lag 909 (1449)
.+.++|.+|+|||||+.-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=83.36 E-value=0.42 Score=20.78 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=8.9
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999657999744798424
Q 000517 890 TALMGVSGAGKTTLMDVL 907 (1449)
Q Consensus 890 ~ai~G~sGaGKTTLl~~L 907 (1449)
++++|--++|||||++.|
T Consensus 6 i~viGHVd~GKTTL~~~L 23 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRL 23 (224)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHH
T ss_conf 999944799999999999
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.30 E-value=0.31 Score=21.56 Aligned_cols=48 Identities=6% Similarity=0.083 Sum_probs=34.4
Q ss_pred HHCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 619978899399999-999999999999999996699899993585299
Q 000517 1016 VANPSIIFMDEPTTG-LDARAAAIVMRAVKNIVNTGRTIVCTIHQPSID 1063 (1449)
Q Consensus 1016 ~~~p~il~lDEPTsg-LD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~~ 1063 (1449)
..+.+++++|+--.= -+......+...+......|+.+|+|...|..+
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~ 143 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQK 143 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf 7621301011265505865778899999998763166389954875100
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=83.28 E-value=0.24 Score=22.33 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999769999479999999299999
Q 000517 200 TLLLGPPGCGKSTFLKALSGNLDP 223 (1449)
Q Consensus 200 t~ILGpsGSGKSTLL~aLaG~l~~ 223 (1449)
..|=|+-||||||+++.|+..+..
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999888778899999999998734
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=83.00 E-value=0.33 Score=21.40 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=20.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 37829999657999744798424099
Q 000517 885 RPGVLTALMGVSGAGKTTLMDVLAGR 910 (1449)
Q Consensus 885 ~~Ge~~ai~G~sGaGKTTLl~~Lagr 910 (1449)
+|+. ..++||+|+|||-|.+.||..
T Consensus 67 p~~n-iLfiGPTGvGKTElAk~LA~~ 91 (364)
T d1um8a_ 67 SKSN-ILLIGPTGSGKTLMAQTLAKH 91 (364)
T ss_dssp CCCC-EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEECCCCCCHHHHHHHHHHH
T ss_conf 8753-244189986378999999864
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.51 E-value=0.48 Score=20.37 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=20.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 873999976999947999999929999
Q 000517 196 PGRMTLLLGPPGCGKSTFLKALSGNLD 222 (1449)
Q Consensus 196 pG~lt~ILGpsGSGKSTLL~aLaG~l~ 222 (1449)
.|.+++++||=.|||||-|--.+.+..
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~~~~~ 27 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRVRRFQ 27 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 947999991416789999999999999
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=82.25 E-value=0.23 Score=22.42 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996579997447984240997
Q 000517 889 LTALMGVSGAGKTTLMDVLAGRK 911 (1449)
Q Consensus 889 ~~ai~G~sGaGKTTLl~~Lagr~ 911 (1449)
-+.|.|+.|.|||||.+.+++..
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iL 52 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALL 52 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 08998899852999999998737
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.54 E-value=0.33 Score=21.37 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=21.3
Q ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 203577378299996579997447984240
Q 000517 879 DVTGSLRPGVLTALMGVSGAGKTTLMDVLA 908 (1449)
Q Consensus 879 ~vs~~i~~Ge~~ai~G~sGaGKTTLl~~La 908 (1449)
|.-..+-.|+..+|+|++|.|||+|+.-++
T Consensus 60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ECCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 434676678778765688888589999999
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.05 E-value=0.33 Score=21.41 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 112224688888789999999999999961997889939999999999999999999999669989999358529
Q 000517 988 IKDSLVGIPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNIVNTGRTIVCTIHQPSI 1062 (1449)
Q Consensus 988 ~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~t~Hqps~ 1062 (1449)
+.=.++..||.-.++++-..=+. +.+-.+ ++=.+..|+-+.+...+-.+. ..+..+++.+-...-
T Consensus 96 ~~inliDtPGh~dF~~ev~~al~-----~~D~al-lVVda~eGv~~qT~~~~~~a~----~~~~p~i~viNKiDr 160 (341)
T d1n0ua2 96 FLINLIDSPGHVDFSSEVTAALR-----VTDGAL-VVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDR 160 (341)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHH-----TCSEEE-EEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH-----HCCCEE-EEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCC
T ss_conf 37999737873889999998875-----237249-998656682046999999998----769986999877265
|