Citrus Sinensis ID: 000546

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430--
MSSEEEILMRDVTNAGLVVSDRIGREVASQLDVEEALEASRYASHPYTTHPREWPPLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSDGRRMYLSTSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSPPLGVGGGLGFGAISLAGRNQSDDISLKVETAYYSAGTLVLSDASPPTMSSLIIVSKDPSSQSYPTGSLGTSARISRALRESVTSLPVEGRMLSVTDILPLPDTATTVQSLYSELEFCGFEISGESCEKSSGKLWARGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVAEKAAEAFVDPRLVGMPQLEGSNALANTRTAAGGFSMGQVVQEAEPVFSGAYEGLCLCASRLLFPLWELPVMVVKGDAISENGVVVCRLSSGAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIRNLFGSYSRNADSNGAGTSNKRQRLPYSPAELAAIEVRAMECIRQLLLRSAEALFLLQLLSQHHVTRLVQGFDANLRQELVQLTFCQLVCSEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTSDSEEKENLAREAFNFLSKVPESADLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAATREYALVQRQQCYEIITSALRSLKGDSSQREFGSPVRPAGPRSALDPASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVREKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSKGGIAEACSVLKRVGSHMYPGDGAVLPLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVLNTYDQXXXXXXXXYPVELFCRHQTSGYAFFDQCSWYLESGQCLYLQKEWVQALQEHL
cccHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccEEEEEEEcEEEEEEccccccccccccccccEEEEEEEEccccccccccEEEEEEEEccEEEEEEEEEEccccccccccccccccccccEEEEcccEEEEEEEEcccccEEEEEccccEEEEEEEcccccccccccEEEccccccccccccccccccccccccEEEEEEEccccEEEEEEcccEEEEEEEcccccccccEEEEEcccccccccccccccccccccccccccccEEEEEEccccccccEEEEEEEcccEEEEEEccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccEEEEEEcccEEEEEEcccccccEEEEEEcccccccccccccccccccccccEEEEEEEcccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEccHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccEEEEEccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccHHHHHHHcccccHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccHHHHHHcccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHc
cccHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccccccccccccEEEEEccccHHHHHHHHHccccHcccccccccccEEEEEEcccEEEEEccccccccEEEcccccEEEEEEEEcccccccHHcEEEEEEEEccEEEEEEEEEEccccccccccccEEEcccccEEEEcccEEEEEEEEccccEEEEEcccccEEEEEEEccccHHHHccEEEccccccccccccccccHccccccccEEEEEEEcccEEEEEEccccEEEEEEcccccccccEEEEccHHHHHHHHHHHHccHccccccccccccccEEEEEEccccHcccEEEEEEEcccEEEEEEEcccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccHHHHHHccccEEEEEcccccccEEEEEcccccccccccccccccccccHHHHHHHHcccccccEcccHccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccEEEEEEcccEEEEEEccHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHcccccHccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEcccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcHHcccHcccccHHHHHHcccHcccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccHHHHHHHHHccHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHcccccccEEEEcHcccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccccccccccccccccHHHHHHHHHHcccHccHHHHHHHHccccccHHEEEEEEEHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHc
MSSEEEILMRDVTNAGLVVSDRIGREVASQLDVEEALEASryashpytthprewpplvevvdtwdlPTVLVERYnaaggegnalcgIFPEIRRAWASVDNSLFLwrfdkwdgqcpeytgeeQVICAVGlakskpgiFVEAIQYLLILATPVELILVGVCcsgagdgtdpyaeislqplpeytvpsdgvtmtcitctdkgrillagrdgNIYELLYTTGSGWYKRCRKVCHTAGvgnvisrwivpnvfrfgavdpivELVFDNERQLLYARTEEMKLQVfvlgpngdgplkKVAEERNlfnqrdthhggrqttgqraphrstkpsvvsisplstleSKWLHLVAVLSdgrrmylstsassgnsgtvggvggfnnhhfrpsclkvvttrpspplgvggglgFGAISlagrnqsddiSLKVETAYYSAgtlvlsdaspptmsSLIIvskdpssqsyptgslgtsaRISRALRESvtslpvegrmlsvtdilplpdtatTVQSLYSELEFcgfeisgescekssgklwargdlstqhilprrriVVFSTMGMMEVVFNRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVAEKAAEafvdprlvgmpqlegsnalantrtaaggfsmgqvvqeaepvfsgaYEGLCLCAsrllfplwelpvmvvkgdaisenGVVVCRLSSGAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAgmgdlsgsilygtgadsvagdQSLIRNLFgsysrnadsngagtsnkrqrlpyspaELAAIEVRAMECIRQLLLRSAEALFLLQLLSQHHVTRLVQGFDANLRQELVQLTFCQLVCSEEGDRLATRLISALMEYytdpdgrgtvddisgrlregcpsyfkesdyKFFLAVECLEraavtsdseeKENLAREAFNFLskvpesadlRTVCRRFEDLRFYEAVVRLPLqkaqaldpagdafnDQIDAATREYALVQRQQCYEIITSALRSlkgdssqrefgspvrpagprsaldpasrKKYICQIVQlgvqspdrIFHEYLYRTMIDLGLEnelleyggpdlvpflqsagrepiqevRAVSGITsaaslmgqtgtpipsneaKYFDLLARYYVLKRQHLLAAHVLLRLAerrstdekdaptldQRRQYLSNAILQaknatnsdslvgstrgafdNGLLDLLEGKLAVLRFQTKIKDELEAIASSLETsvdmsestqngsapdsssttdaNYAKIVREKAKELSLDLKSITQLyneyavpfELWEICLEMLYFAnytgdadssIIRETWARLIDQALSKGGIAEACSVLKRvgshmypgdgavlpLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGaaepvlntydqxxxxxxxxypvelfcrhqtSGYAFFDQCSWYLESGQCLYLQKEWVQALQEHL
MSSEEEILMrdvtnaglvvsdriGREVASQLDVEEALEASRYAshpytthprewpplVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFnqrdthhggrqttgqraphrstkpsvvsisplstlesKWLHLVAVLSDGRRMYLSTSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSPPLGVGGGLGFGAISLAGRNQSDDISLKVETAYYSAGTLVLSDASPPTMSSLIIVSkdpssqsyptgslgtsarisrALREsvtslpvegrmlsvtdilplpDTATTVQSLYSELEFCGFEISGESCEKSSGKLwargdlstqhilprRRIVVFSTMGMMEVVFNRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVAEKAAEAFVDPRLVGMPQLEGSNALANTRTAAGGFSMGQVVQEAEPVFSGAYEGLCLCASRLLFPLWELPVMVVKGDAISENGVVVCRLSSGAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIRNLFGSYSrnadsngagtsnkrqrlpySPAELAAIEVRAMECIRQLLLRSAEALFLLQLLSQHHVTRLVQGFDANLRQELVQLTFCQLVCSEEGDRLATRLISALMeyytdpdgrgtvddisgRLREGCPSYFKESDYKFFLAVECLERAavtsdseekeNLAREAFnflskvpesadlRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAATREYALVQRQQCYEIITSALrslkgdssqrefgspvrpagprsaldpaSRKKYICQIVqlgvqspdrIFHEYLYRTMIDLGLENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITSAASLmgqtgtpipsnEAKYFDLLARYYVLKRQHLLAAHVLLRlaerrstdekdaptldqRRQYLSNAILqaknatnsdslvgSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMsestqngsapdsssttdaNYAKIVREKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSKGGIAEACSVLKRVGSHMYPGDGAVLPLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVLNTYDQXXXXXXXXYPVELFCRHQTSGYAFFDQCSWYLESGQCLYLQKEWVQALQEHL
MSSEEEILMRDVTNAGLVVSDRIGREVASQLDVEEALEASRYASHPYTTHPREWPPLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSDGRRMYLstsassgnsgtvggvggFNNHHFRPSCLKVVTTRpspplgvggglgfgaislagRNQSDDISLKVETAYYSAGTLVLSDASPPTMSSLIIVSKDPSSQSYPTGSLGTSARISRALRESVTSLPVEGRMLSVTDILPLPDTATTVQSLYSELEFCGFEISGESCEKSSGKLWARGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVAEKAAEAFVDPRLVGMPQLEGSNALANTRTAAGGFSMGQVVQEAEPVFSGAYEGLCLCASRLLFPLWELPVMVVKGDAISENGVVVCRLSSGAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIRNLFGSYSRNADSNGAGTSNKRQRLPYSPAELAAIEVRAMECIRqlllrsaealfllqllsqHHVTRLVQGFDANLRQELVQLTFCQLVCSEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTSDSEEKENLAREAFNFLSKVPESADLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAATREYALVQRQQCYEIITSALRSLKGDSSQREFGSPVRPAGPRSALDPASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDlglenelleyggPDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHllaahvllrlaerrSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVREKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSKGGIAEACSVLKRVGSHMYPGDGAVLPLDTLCLHLEKAALERLDSQVESVGDEDIarallaackgaaEPVLNTYDqxxxxxxxxYPVELFCRHQTSGYAFFDQCSWYLESGQCLYLQKEWVQALQEHL
**********DVTNAGLVVSDRIGREVASQLDVEEALEASRYASHPYTTHPREWPPLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP***********************************************LSTLESKWLHLVAVLSDGRRMYL**********TVGGVGGFNNHHFRPSCLKVVTTRPSPPLGVGGGLGFGAISLAGRNQSDDISLKVETAYYSAGTLVLS********************************************PVEGRMLSVTDILPLPDTATTVQSLYSELEFCGFEISGESCEKSSGKLWARGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVAEKAAEAFVDPRLVGMPQL****ALANTRTAAGGFSMGQVVQEAEPVFSGAYEGLCLCASRLLFPLWELPVMVVKGDAISENGVVVCRLSSGAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIRNLFGS***********************AELAAIEVRAMECIRQLLLRSAEALFLLQLLSQHHVTRLVQGFDANLRQELVQLTFCQLVCSEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAV************EAFNFLSKVPESADLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAATREYALVQRQQCYEIITSAL*******************************KYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITS*************SNEAKYFDLLARYYVLKRQHLLAAHVLLRLA************************************VGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDEL**********************************KIVREKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSKGGIAEACSV*************AVLPLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVLNTYDQXXXXXXXXYPVELFCRHQTSGYAFFDQCSWYLESGQCLYLQKEWVQA*****
************TNAGLVVSDRIGREVASQLDVE**********HPYTTHPREWPPLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQ******************STKPSVVSISPLSTLESKWLHLVAVLSDGRRMYLSTSAS*********************CLKVVT***********************************AYYSAGTLVLSDASPPTMSSLIIVSKDPS*****************ALRESVTSLPVEGRMLSVTDILPLPDTATTVQSLYSELEF*******************RGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVH***********KAAEAFVDPR************************************SGAYEGLCLCASRLLFPLWELPVMV******************GAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSGSILY************************************************IEVRAMECIRQLLLRSAEALFLLQLLSQHHVTRLVQGFDANLRQELVQLTFCQLVCSEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVE*****************AREAFNFLSKVPESADLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGD************YALVQRQQCYEIITSALRSLK*************************RKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGPDLVPFLQSAGRE**Q*VR**SGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQ********************GLLDLLEGKLAVLRFQTKIKDELEA*****************************NYAKIVREKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSKGG*AEACSVLKRVGSHMYPGDGAVLPLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVLNTYDQ********YPVELFCRHQTSGYAFFDQCSWYLESGQCLYLQKEWVQALQEH*
********MRDVTNAGLVVSDRIGREVASQLDVEEALEASRYASHPYTTHPREWPPLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRD*************************SPLSTLESKWLHLVAVLSDGRRMYLSTSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSPPLGVGGGLGFGAISLAGRNQSDDISLKVETAYYSAGTLVLSDASPPTMSSLIIVSK***************ARISRALRESVTSLPVEGRMLSVTDILPLPDTATTVQSLYSELEFCGFEISGESCEKSSGKLWARGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVAEKAAEAFVDPRLVGMPQLEGSNALANTRTAAGGFSMGQVVQEAEPVFSGAYEGLCLCASRLLFPLWELPVMVVKGDAISENGVVVCRLSSGAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIRNLFGSYSRNAD**********QRLPYSPAELAAIEVRAMECIRQLLLRSAEALFLLQLLSQHHVTRLVQGFDANLRQELVQLTFCQLVCSEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAA*********NLAREAFNFLSKVPESADLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAATREYALVQRQQCYEIITSALRSL*************************SRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIASSLE**********************ANYAKIVREKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSKGGIAEACSVLKRVGSHMYPGDGAVLPLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVLNTYDQXXXXXXXXYPVELFCRHQTSGYAFFDQCSWYLESGQCLYLQKEWVQALQEHL
******ILMRDVTNAGLVVSDRIGREVASQLDVEEALEASRYASHPYTTHPREWPPLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSDGRRMYLSTSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSPPL*********************ISLKVETAYYSAGTLVLSDASPPTMSSLIIVSKDPSSQSYPTGSLGTSARISRALRESVTSLPVEGRMLSVTDILPLPDTATTVQSLYSELEFCGFEISGESCEKSSGKLWARGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVAEKAAEAFVDPRLVGMPQLEGSN*********************EPVFSGAYEGLCLCASRLLFPLWELPVMVVKGDAISENGVVVCRLSSGAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIRNLFGSYSRN**************LPYSPAELAAIEVRAMECIRQLLLRSAEALFLLQLLSQHHVTRLVQGFDANLRQELVQLTFCQLVCSEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTSDSEEKENLAREAFNFLSKVPESADLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAATREYALVQRQQCYEIITSALRSLKGDSSQ************RSALDPASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIAS*****************************KIVREKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSKGGIAEACSVLKRVGSHMYPGDGAVLPLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVLNTYDQXXXXXXXXYPVELFCRHQTSGYAFFDQCSWYLESGQCLYLQKEWVQALQEHL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSEEEILMRDVTNAGLVVSDRIGREVASQLDVEEALEASRYASHPYTTHPREWPPLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSDGRRMYLSTSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSPPLGVGGGLGFGAISLAGRNQSDDISLKVETAYYSAGTLVLSDASPPTMSSLIIVSKDPSSQSYPTGSLGTSARISRALRESVTSLPVEGRMLSVTDILPLPDTATTVQSLYSELEFCGFEISGESCEKSSGKLWARGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVAEKAAEAFVDPRLVGMPQLEGSNALANTRTAAGGFSMGQVVQEAEPVFSGAYEGLCLCASRLLFPLWELPVMVVKGDAISENGVVVCRLSSGAxxxxxxxxxxxxxxxxxxxxxRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIRNLFGSYSRNADSNGAGTSNKRQRLPYSPAELAAIEVRAMECIRQLLLRSAEALFLLQLLSQHHVTRLVQGFDANLRQELVQLTFCQLVCSEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTSDSEEKENLAREAFNFLSKVPESADLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAATREYALVQRQQCYEIITSALRSLKGDSSQREFGSPVRPAGPRSALDPASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVREKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSKGGIAEACSVLKRVGSHMYPGDGAVLPLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVLNTYDQXXXXXXXXYPVELFCRHQTSGYAFFDQCSWYLESGQCLYLQKEWVQALQEHL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1432 2.2.26 [Sep-21-2011]
O756941391 Nuclear pore complex prot yes no 0.780 0.803 0.269 1e-101
Q99P881391 Nuclear pore complex prot yes no 0.782 0.805 0.263 1e-100
P371991390 Nuclear pore complex prot yes no 0.766 0.789 0.264 3e-98
Q9URX81315 Probable nucleoporin C890 yes no 0.777 0.846 0.233 8e-55
P381811502 Nucleoporin NUP170 OS=Sac yes no 0.766 0.730 0.206 4e-28
P400641391 Nucleoporin NUP157 OS=Sac no no 0.183 0.189 0.223 6e-08
>sp|O75694|NU155_HUMAN Nuclear pore complex protein Nup155 OS=Homo sapiens GN=NUP155 PE=1 SV=1 Back     alignment and function desciption
 Score =  369 bits (947), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 368/1364 (26%), Positives = 583/1364 (42%), Gaps = 247/1364 (18%)

Query: 56   PLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCP 115
            P +  +    LP  LVE++     + N + G+FP I RAW ++D+ +F+W ++   G   
Sbjct: 79   PEISSIRRVPLPPELVEQFGHM--QCNCMMGVFPPISRAWLTIDSDIFMWNYED-GGDLA 135

Query: 116  EYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCC----SGAGDGTDPYA 171
             + G  + I AVGL K K GIF   +++LL+LATPV+++++G+      +G+G   D  +
Sbjct: 136  YFDGLSETILAVGLVKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLS 195

Query: 172  E-ISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWY-KRCRKVC 229
              + L P P Y++P+D   +  IT TD GRI LAG+DG +YE+ Y   +GW+ +RCRK+ 
Sbjct: 196  GGMQLLPDPLYSLPTDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKIN 255

Query: 230  HTAGVGNVISRWIVPNV--FRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDG 287
            H+    +    ++VP++  F F   DPI+++  DN R +LY R+E+  +QV+ LG +G G
Sbjct: 256  HSKSSLS----FLVPSLLQFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQG 311

Query: 288  PLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSD 347
              +  +  +N          G      R   RS    +V I+ +   ES    L+AV   
Sbjct: 312  MSRVASVSQNAI----VSAAGNIA---RTIDRSVFKPIVQIAVIENSESLDCQLLAVTHA 364

Query: 348  GRRMYLSTSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSPPLGVGGGLGFGAISLAG 407
            G R+Y ST               F     RP+ L +V  R  P        GF A S   
Sbjct: 365  GVRLYFSTCP-------------FRQPLARPNTLTLVHVRLPP--------GFSASSTVE 403

Query: 408  RNQSDDISLKVETAYYSAGTLVLSDASPPTMSSLIIVSKDPSSQSYPTGSLGTSARI--- 464
            +        KV  A YS G L+++ +       L  V+ D      P      +A +   
Sbjct: 404  KPS------KVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQMTAGVDGH 457

Query: 465  SRALRESVTSLPVEGRMLSVT-DILPLPDTATTVQSLYSELEFCGFEISGESCEKSSGKL 523
            S AL  ++  L V+  +  +  D +P+ D+   VQ                         
Sbjct: 458  SWAL-SAIDELKVDKIITPLNKDHIPITDSPVVVQ------------------------- 491

Query: 524  WARGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELN--SPRSILEDFFNRFG 581
                    QH+LP ++ V+ S  G +     RPVD LR L   N       +E FF    
Sbjct: 492  --------QHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQ 543

Query: 582  AGEAAAMCLMLAARIVHSENLIS----NAVAEKAAEAFV--------------------- 616
              +A A CL+LA      +  +S     A      EA +                     
Sbjct: 544  EDQACATCLILACSTAACDREVSAWATRAFFRYGGEAQMRFPTTLPPPSNVGPILGSPVY 603

Query: 617  ------------DPRLVGMPQLEGSN---------ALANTRTAAGGFSMGQVVQEAEPVF 655
                        +P  +G P   G           AL N  T A   S    V   E V+
Sbjct: 604  SSSPVPSGSPYPNPSFLGTPS-HGIQPPAMSTPVCALGNPATQATNMS---CVTGPEIVY 659

Query: 656  SGAYEGLCLCASRLLFPLWELPVMVVKGDAISENGVVVCRLSSGAMQVLENKIRSLEKFL 715
            SG + G+C+  SR++  +W+   +VV+    S N  +    SS   Q+LE+ ++ L    
Sbjct: 660  SGKHNGICIYFSRIMGNIWD-ASLVVERIFKSGNREITAIESSVPCQLLESVLQEL---- 714

Query: 716  RCIRNQRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIRNLFGSYSRNADSNGAGTSN 775
                   +GL  ++      +G  L G    +    Q LI      + R  + N      
Sbjct: 715  -------KGLQEFLDRNSQFAGGPL-GNPNTTAKVQQRLI-----GFMRPENGNPQQMQQ 761

Query: 776  KRQRLPYSPAELAAIEVRAMECIRQLLLRSAEALFLLQLLSQHHVTRLVQGFDANLRQEL 835
            + QR  +  A+L+  E  +++ I+QL+ +S +AL L +LL +H  T +V      L+++L
Sbjct: 762  ELQR-KFHEAQLS--EKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAELQKELQEQL 818

Query: 836  VQLTFCQLVCSEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKF 895
               TF  LV  ++   L   LI++L+  Y   +    VD IS  L++ CP  +   D   
Sbjct: 819  KITTFKDLVIRDK--ELTGALIASLINCYIRDNA--AVDGISLHLQDICPLLYSTDDAIC 874

Query: 896  FLAVECLERAAVTSDSEEKENLAREAFNFLSKVPESADLRTVCRRFEDLRFYEAVVRLPL 955
              A E L+R+    +  EKE + RE+     K+    DL  VC ++  +RFYE VV L L
Sbjct: 875  SKANELLQRSRQVQNKTEKERMLRESLKEYQKISNQVDLSNVCAQYRQVRFYEGVVELSL 934

Query: 956  QKAQALDPAGDAFNDQIDAATRE-----YALVQRQQCYEIITSALRSL--KGDSSQREFG 1008
              A+  DP G   +        E      A  +R   Y+ IT  L+ L  +  ++ +   
Sbjct: 935  TAAEKKDPQGLGLHFYKHGEPEEDIVGLQAFQERLNSYKCITDTLQELVNQSKAAPQSPS 994

Query: 1009 SPVRPAGPRSALDP-----ASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLE 1063
             P +P  P  + DP          +  Q+++L  +S D +F   LY  +I + L ++LL+
Sbjct: 995  VPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSKDELFSIALYNWLIQVDLADKLLQ 1054

Query: 1064 YGGPDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKR 1123
               P L P L    +                         +  N  +Y DLL RYY   R
Sbjct: 1055 VASPFLEPHLVRMAK-------------------------VDQNRVRYMDLLWRYYEKNR 1089

Query: 1124 QHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNG 1183
                AA VL RLA+  ST+     +L QR +Y++ AIL AK++T   S+      A D  
Sbjct: 1090 SFSNAARVLSRLADMHSTE----ISLQQRLEYIARAILSAKSSTAISSI------AADGE 1139

Query: 1184 LLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVR 1243
             L  LE K+ V R Q +I++ L+             + + + S  D+ S  D+       
Sbjct: 1140 FLHELEEKMEVARIQLQIQETLQ------------RQYSHHSSVQDAVSQLDS------- 1180

Query: 1244 EKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQ-- 1301
                    +L  IT+LY E+A PF+L E  L +++ A Y+   D  +++  W  +I++  
Sbjct: 1181 --------ELMDITKLYGEFADPFKLAECKLAIIHCAGYS---DPILVQTLWQDIIEKEL 1229

Query: 1302 ----ALSKGGIAEACSVLKRVGSHMYPGDGAVLPLDTLCLHLEK 1341
                 LS      A S+   +   +Y G     PLD +   LE+
Sbjct: 1230 SDSVTLSSSDRMHALSLKIVLLGKIYAGTPRFFPLDFIVQFLEQ 1273
Essential component of nuclear pore complex. Nucleoporins may be involved both in binding and translocating proteins during nucleocytoplasmic transport.
Homo sapiens (taxid: 9606)
>sp|Q99P88|NU155_MOUSE Nuclear pore complex protein Nup155 OS=Mus musculus GN=Nup155 PE=2 SV=1 Back     alignment and function description
>sp|P37199|NU155_RAT Nuclear pore complex protein Nup155 OS=Rattus norvegicus GN=Nup155 PE=1 SV=1 Back     alignment and function description
>sp|Q9URX8|NG06_SCHPO Probable nucleoporin C890.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC890.06 PE=3 SV=3 Back     alignment and function description
>sp|P38181|NU170_YEAST Nucleoporin NUP170 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP170 PE=1 SV=1 Back     alignment and function description
>sp|P40064|NU157_YEAST Nucleoporin NUP157 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP157 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1432
3594725951496 PREDICTED: nuclear pore complex protein 0.962 0.921 0.827 0.0
2555700791490 protein with unknown function [Ricinus c 0.958 0.921 0.814 0.0
3565245491486 PREDICTED: nuclear pore complex protein 0.956 0.921 0.800 0.0
3565130561485 PREDICTED: nuclear pore complex protein 0.956 0.921 0.797 0.0
3575213111484 Nuclear pore complex protein Nup155 [Med 0.955 0.921 0.792 0.0
4494490941492 PREDICTED: nuclear pore complex protein 0.959 0.920 0.741 0.0
87782271475 F10B6.25 [Arabidopsis thaliana] 0.944 0.917 0.748 0.0
306840281464 nucleoporin 155 [Arabidopsis thaliana] g 0.944 0.924 0.748 0.0
4495155121304 PREDICTED: LOW QUALITY PROTEIN: nuclear 0.907 0.996 0.746 0.0
3571133341469 PREDICTED: nuclear pore complex protein 0.944 0.921 0.645 0.0
>gi|359472595|ref|XP_002281257.2| PREDICTED: nuclear pore complex protein Nup155-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 2331 bits (6042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1146/1385 (82%), Positives = 1255/1385 (90%), Gaps = 6/1385 (0%)

Query: 1    MSSEEEILMRDVTNAGLVVSDRIGREVASQLDVEEALEASRYASHPYTTHPREWPPLVEV 60
            MS ++EI++RDVTNAGLVVSDRI R+VA+Q D+EEALEASRY SHPY+THPREWPPLVEV
Sbjct: 1    MSWDDEIVVRDVTNAGLVVSDRINRDVAAQTDLEEALEASRYTSHPYSTHPREWPPLVEV 60

Query: 61   VDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYTGE 120
            +DTW+LP VL+ERYNAAGGEG ALCG+FPEIRRAWASVDNSLFLWRFDKWDGQCPEY+GE
Sbjct: 61   MDTWELPPVLIERYNAAGGEGTALCGVFPEIRRAWASVDNSLFLWRFDKWDGQCPEYSGE 120

Query: 121  EQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPE 180
            EQ ICAVGLAKSKPG+FVEAIQYLL+LATPVELILVGVCC G GDGTDPY E+SLQ LPE
Sbjct: 121  EQAICAVGLAKSKPGVFVEAIQYLLVLATPVELILVGVCCCGRGDGTDPYEEVSLQLLPE 180

Query: 181  YTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISR 240
            YT+PSDGVTMTCITCTDKGRI LAGRDG+IYE+ YTTGSGW KRCRKVC T G+G+VISR
Sbjct: 181  YTIPSDGVTMTCITCTDKGRIFLAGRDGHIYEMHYTTGSGWNKRCRKVCLTVGLGSVISR 240

Query: 241  WIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFN 300
            WIVP VF+FGAVDPIVE+V DNER +LYARTEEMKLQVFVLGP GDGPLKKVAEER+L N
Sbjct: 241  WIVPTVFKFGAVDPIVEMVVDNERHILYARTEEMKLQVFVLGPKGDGPLKKVAEERSLIN 300

Query: 301  QRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSDGRRMYLSTSASSG 360
            Q+D H+GGRQ+ G R  +RS KPS++ ISPLSTLESKWLHLVAVLSDGRRMYLST+ SSG
Sbjct: 301  QKDAHYGGRQSAGSRPSNRSVKPSIICISPLSTLESKWLHLVAVLSDGRRMYLSTAPSSG 360

Query: 361  NSGTVGGVGGFNNHHFRPSCLKVVTTRPSPPLGVGGGLGFGAISLAGRNQSDDISLKVET 420
            NSG VGG+ GFN  H +P+CLKVVTTRPSPPLGV GGL FGAISL+ R Q++D++LKVE+
Sbjct: 361  NSGAVGGLSGFNTSHHKPNCLKVVTTRPSPPLGVTGGLAFGAISLSSRTQNEDLALKVES 420

Query: 421  AYYSAGTLVLSDASPPTMSSLIIVSKDPSSQSYPTGSLGTSARISRALRESVTSLPVEGR 480
            AYYSAG LVLSD+SPPTMSSL+IV +D S+QS  +G LGT+AR SRALRESV+SLPVEGR
Sbjct: 421  AYYSAGALVLSDSSPPTMSSLLIVGRDSSTQSSVSGGLGTTARTSRALRESVSSLPVEGR 480

Query: 481  MLSVTDILPLPDTATTVQSLYSELEFCGFEISGESCEKSSGKLWARGDLSTQHILPRRRI 540
            ML V D+LP PD A TVQSLYSELEF GFE SGESCEK+ GKLWARGDLSTQHILPRRRI
Sbjct: 481  MLFVADVLPSPDIAATVQSLYSELEFSGFESSGESCEKACGKLWARGDLSTQHILPRRRI 540

Query: 541  VVFSTMGMMEVVFNRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSE 600
            VVFSTMGMMEVVFNRPVDILRRL E NSPRS+LEDFFNRFGAGEAAAMCLMLAA+IVH+E
Sbjct: 541  VVFSTMGMMEVVFNRPVDILRRLLESNSPRSLLEDFFNRFGAGEAAAMCLMLAAKIVHTE 600

Query: 601  NLISNAVAEKAAEAFVDPRLVGMPQLEGSNALANTRTAAGGFSMGQVVQEAEPVFSGAYE 660
            NLISN V+EKAAEAF DPR+VGMPQLEGS+A +NTRTAAGGFSMGQVVQEAEP+FSGA+E
Sbjct: 601  NLISNVVSEKAAEAFEDPRVVGMPQLEGSSAFSNTRTAAGGFSMGQVVQEAEPIFSGAHE 660

Query: 661  GLCLCASRLLFPLWELPVMVVKG-----DAISENGVVVCRLSSGAMQVLENKIRSLEKFL 715
            GLCLC+SRLL P+WELPVMV+KG     +A+SE+G+V CRLSSGAMQVLENKIR+LEKFL
Sbjct: 661  GLCLCSSRLLLPVWELPVMVMKGGLDTSNAMSESGIVSCRLSSGAMQVLENKIRALEKFL 720

Query: 716  RCIRNQRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIRNLFGSYSRNADSNGAGTSN 775
            R  RNQRRGLYG VAG+GDL+GSILYGTG+D  AGD S++RNLFG+YSR+ +    GTSN
Sbjct: 721  RSRRNQRRGLYGCVAGLGDLTGSILYGTGSDLGAGDNSMVRNLFGAYSRSIEPGDGGTSN 780

Query: 776  KRQRLPYSPAELAAIEVRAMECIRQLLLRSAEALFLLQLLSQHHVTRLVQGFDANLRQEL 835
            KRQRLPYSPAELAA+EVRAMECIRQLLLRSAEALFLLQ L QHHVTRLVQGFD NLRQEL
Sbjct: 781  KRQRLPYSPAELAAMEVRAMECIRQLLLRSAEALFLLQQLCQHHVTRLVQGFDVNLRQEL 840

Query: 836  VQLTFCQLVCSEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKF 895
            VQLTF QLVCSEEGDRLATRLIS+LMEYYT PDGRGTVDDIS RLREGCPSY+KESDYKF
Sbjct: 841  VQLTFHQLVCSEEGDRLATRLISSLMEYYTGPDGRGTVDDISARLREGCPSYYKESDYKF 900

Query: 896  FLAVECLERAAVTSDSEEKENLAREAFNFLSKVPESADLRTVCRRFEDLRFYEAVVRLPL 955
            +LAVE LERAAVTSD+EEKENLAREAFNFLSKVPESADLRTVC+RFEDLRFYEAVVRLPL
Sbjct: 901  YLAVEFLERAAVTSDTEEKENLAREAFNFLSKVPESADLRTVCKRFEDLRFYEAVVRLPL 960

Query: 956  QKAQALDPAGDAFNDQIDAATREYALVQRQQCYEIITSALRSLKGDSSQREFGSPVRPAG 1015
            QKAQALDPAGDAFN+Q+DA TRE+AL Q +QCYEIITSALRSLKG++SQ+EFGSPVRPA 
Sbjct: 961  QKAQALDPAGDAFNEQLDAGTREHALAQLEQCYEIITSALRSLKGEASQKEFGSPVRPAA 1020

Query: 1016 PRSALDPASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGPDLVPFLQS 1075
             RS LD ASR KYI QIVQLGVQS DR+FHEYLYRTMIDLGLENELLEYGGPDLVPFLQ+
Sbjct: 1021 -RSTLDQASRDKYIRQIVQLGVQSSDRVFHEYLYRTMIDLGLENELLEYGGPDLVPFLQN 1079

Query: 1076 AGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRL 1135
            AGRE +QEVRAVS ITS  S +G  G PIPSN+ KYFDLLARYYVLKRQH+LAAHVLLRL
Sbjct: 1080 AGRESLQEVRAVSSITSTRSPVGLFGAPIPSNQTKYFDLLARYYVLKRQHVLAAHVLLRL 1139

Query: 1136 AERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVL 1195
            AERRSTD  D PTL+QRRQYLSNA+LQAKNA+NSD LVGS RGA DNGLLDLLEGKLAVL
Sbjct: 1140 AERRSTDAGDVPTLEQRRQYLSNAVLQAKNASNSDGLVGSVRGASDNGLLDLLEGKLAVL 1199

Query: 1196 RFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVREKAKELSLDLKS 1255
            RFQ KIK ELEAIAS LE+S   SES  N S  +S+   D N+A  V+EKA+E+SLDLKS
Sbjct: 1200 RFQIKIKGELEAIASRLESSNVTSESVLNESCSESNLNADTNFANTVQEKAREISLDLKS 1259

Query: 1256 ITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSKGGIAEACSVL 1315
            ITQLYNEYAVPFELWEICLEMLYFANY+GDADSSI+RETWARLIDQALSKGGIAEACSVL
Sbjct: 1260 ITQLYNEYAVPFELWEICLEMLYFANYSGDADSSIVRETWARLIDQALSKGGIAEACSVL 1319

Query: 1316 KRVGSHMYPGDGAVLPLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVL 1375
            KRVGSH+YPGDGAVLPLDTLCLHLEKAALERL S VE VGDED+ RALLAACKGA EPVL
Sbjct: 1320 KRVGSHIYPGDGAVLPLDTLCLHLEKAALERLASGVEPVGDEDVVRALLAACKGATEPVL 1379

Query: 1376 NTYDQ 1380
            NTY+Q
Sbjct: 1380 NTYEQ 1384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255570079|ref|XP_002526002.1| protein with unknown function [Ricinus communis] gi|223534734|gb|EEF36426.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
>gi|356524549|ref|XP_003530891.1| PREDICTED: nuclear pore complex protein Nup155-like [Glycine max] Back     alignment and taxonomy information
>gi|356513056|ref|XP_003525230.1| PREDICTED: nuclear pore complex protein Nup155-like [Glycine max] Back     alignment and taxonomy information
>gi|357521311|ref|XP_003630944.1| Nuclear pore complex protein Nup155 [Medicago truncatula] gi|355524966|gb|AET05420.1| Nuclear pore complex protein Nup155 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449449094|ref|XP_004142300.1| PREDICTED: nuclear pore complex protein Nup155-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|8778227|gb|AAF79236.1|AC006917_21 F10B6.25 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30684028|ref|NP_172938.2| nucleoporin 155 [Arabidopsis thaliana] gi|332191114|gb|AEE29235.1| nucleoporin 155 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449515512|ref|XP_004164793.1| PREDICTED: LOW QUALITY PROTEIN: nuclear pore complex protein Nup155-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|357113334|ref|XP_003558458.1| PREDICTED: nuclear pore complex protein Nup155-like isoform 2 [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1432
TAIR|locus:20068021464 NUP155 "nucleoporin 155" [Arab 0.689 0.674 0.733 0.0
UNIPROTKB|F1NNT91348 NUP155 "Uncharacterized protei 0.197 0.209 0.354 1.2e-76
UNIPROTKB|F1NPS01394 NUP155 "Uncharacterized protei 0.197 0.203 0.354 1.6e-76
UNIPROTKB|F1SN951460 NUP155 "Uncharacterized protei 0.197 0.193 0.349 1.9e-75
MGI|MGI:21811821391 Nup155 "nucleoporin 155" [Mus 0.197 0.203 0.354 3.2e-75
UNIPROTKB|F6XTD91390 NUP155 "Uncharacterized protei 0.197 0.203 0.354 3.8e-75
UNIPROTKB|D4A0V41390 Nup155 "Nuclear pore complex p 0.197 0.203 0.354 4.6e-74
UNIPROTKB|F1MNT11391 NUP155 "Uncharacterized protei 0.233 0.240 0.337 3.5e-73
RGD|6211991390 Nup155 "nucleoporin 155" [Ratt 0.236 0.243 0.327 8.3e-73
UNIPROTKB|P371991390 Nup155 "Nuclear pore complex p 0.236 0.243 0.327 8.3e-73
TAIR|locus:2006802 NUP155 "nucleoporin 155" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3810 (1346.2 bits), Expect = 0., P = 0.
 Identities = 733/1000 (73%), Positives = 837/1000 (83%)

Query:     1 MSSEEEILMRDVTNAGLVVSDRIGREVASQLDVEEALEASRYASHPYTTHPREWPPLVEV 60
             MS ++EI+MRDVT+AG+ + DRIGRE ASQLD+EEALEASRYASHPY+THPREWPPL+EV
Sbjct:     1 MSQDDEIVMRDVTSAGICIGDRIGREAASQLDLEEALEASRYASHPYSTHPREWPPLIEV 60

Query:    61 VDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYTGE 120
              +TW+LP+VL+ERYN AGGEG ALCGIFPEIRRAWASVDNSLFLWRFDK DGQCPEY+GE
Sbjct:    61 GETWELPSVLIERYNTAGGEGTALCGIFPEIRRAWASVDNSLFLWRFDKRDGQCPEYSGE 120

Query:   121 EQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPE 180
             EQ ICAVGLAK +PG+FVEAIQYLL+LATPVEL+LVGVCC+   DG DPYAEIS+QPLP+
Sbjct:   121 EQAICAVGLAKCRPGVFVEAIQYLLVLATPVELVLVGVCCTEGPDGRDPYAEISVQPLPD 180

Query:   181 YTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISR 240
             YT+ SDGVTMTC+TCT+KGRI +AGRDG+IYELLYTTGSGW KRCRKVC TAGVG++ISR
Sbjct:   181 YTISSDGVTMTCVTCTNKGRIFMAGRDGHIYELLYTTGSGWNKRCRKVCLTAGVGSMISR 240

Query:   241 WIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFN 300
             W+VPNVF+FGAVDP+VE+V DNERQ+LYARTEEMKLQ +V GPNG+GPLKKVAEERNL N
Sbjct:   241 WVVPNVFKFGAVDPVVEMVVDNERQILYARTEEMKLQAYVSGPNGEGPLKKVAEERNLLN 300

Query:   301 QRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSDGRRMYLXXXXXXX 360
             Q+D   G RQ+       RS KPS+VSISPLS LESKWLHLVA LSDGRRMYL       
Sbjct:   301 QKDLSQGNRQSA---VAGRSNKPSIVSISPLSMLESKWLHLVAALSDGRRMYLSTSSSGS 357

Query:   361 XXXXXXXXXXFNNHHFRPSCLKVVTTRXXXXXXXXXXXXXXXXXXXXRNQSDDISLKVET 420
                       FNNH   P+CLKVV+TR                    R Q+DD+S+K+ET
Sbjct:   358 GSTISFSG--FNNHRQTPNCLKVVSTRPSPPLGVGVGLGFGAASVAGRTQNDDLSMKIET 415

Query:   421 AYYSAGTLVLSDASPPTMSSLIIVSKDPSSQSYPTGSLGTSARISRALRESVTSLPVEGR 480
             AYYS GTLVLSD+SPP MSSL++VS+D S  S    S G S+R SRALRE V+SLP+EGR
Sbjct:   416 AYYSVGTLVLSDSSPPAMSSLLVVSRDSSVHSQAGSSSGPSSRSSRALREVVSSLPIEGR 475

Query:   481 MLSVTDILPLPDTATTVQSLYSELEFCGFEISGESCEKSSGKLWARGDLSTQHILPRRRI 540
             ML V D+LP PDTA T+QSLYSELE+CG E+SGES EK+ GKLWAR DLSTQHILPRR+I
Sbjct:   476 MLFVADVLPSPDTAATIQSLYSELEYCGVEVSGESYEKACGKLWARSDLSTQHILPRRKI 535

Query:   541 VVFSTMGMMEVVFNRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSE 600
             VVF+TMGMME+VFNRPVDILRRL E NSPRS+LEDFF RFG GEAAAMCLMLAARI++ E
Sbjct:   536 VVFTTMGMMELVFNRPVDILRRLLESNSPRSLLEDFFTRFGVGEAAAMCLMLAARIINFE 595

Query:   601 NLISNAVAEKAAEAFVDPRLVGMPQLEGSNALANTRTAAGGFSMGQVVQEAEPVFSGAYE 660
             +LISN VA+KAAEAF DPR+VGMPQ +GS+ L+NTRTA GGFSMGQVVQEAEP+FSGA+E
Sbjct:   596 DLISNIVADKAAEAFEDPRIVGMPQFDGSSGLSNTRTATGGFSMGQVVQEAEPIFSGAHE 655

Query:   661 GLCLCASRLLFPLWELPVMVVK--GDAISENGVVVCRLSSGAMQVLENKIRSLEKFLRCI 718
             GLCLC SRLLFPLWELPVM  K   D +SE+GVV+CRLS+ AM VLE+KIRSLEKFLR  
Sbjct:   656 GLCLCTSRLLFPLWELPVMSKKTSSDTMSEDGVVICRLSTSAMHVLESKIRSLEKFLRSR 715

Query:   719 RNQRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIRNLFGSYSRNADSNGAGTSNKRQ 778
             RNQRRGLYG VAG+GD++GSILYGTG++  A +++++RNLFG+YS     NG  ++NKRQ
Sbjct:   716 RNQRRGLYGCVAGLGDVTGSILYGTGSELGATERNMVRNLFGAYS-----NGGESANKRQ 770

Query:   779 RLPYSPAELAAIEVRAMECIRXXXXXXXXXXXXXXXXXXHHVTRLVQGFDANLRQELVQL 838
             RLPYSPAELAA EVRAMECIR                  HHV RLVQ  DANL+Q LVQL
Sbjct:   771 RLPYSPAELAATEVRAMECIRQLLLRSAEALFLLQLLSQHHVARLVQELDANLKQALVQL 830

Query:   839 TFCQLVCSEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLA 898
             TF QLVCSEEGD++ATRLISA+MEYYT  DGRGTVDDIS RLREGCPSYFKESDYKF+LA
Sbjct:   831 TFHQLVCSEEGDQIATRLISAVMEYYTGSDGRGTVDDISPRLREGCPSYFKESDYKFYLA 890

Query:   899 VECLERAAVTSDSEEKENLAREAFNFLSKVPESADLRTVCRRFEDLRFYEAVVRLPLQKA 958
             VE LERAA+TSD+EEKEN+AREAF+FLSKVP SADL+TVC+RFEDLRFYEAVV LPLQKA
Sbjct:   891 VERLERAALTSDAEEKENVAREAFSFLSKVPGSADLQTVCKRFEDLRFYEAVVCLPLQKA 950

Query:   959 QALDPAGDAFNDQIDAATREYALVQRQQCYEIITSALRSL 998
             QALDPAGDAFNDQ+DA+ RE+AL QR+QCYEII +ALRSL
Sbjct:   951 QALDPAGDAFNDQLDASIREHALAQRKQCYEIIANALRSL 990
GO:0005634 "nucleus" evidence=ISM
GO:0005643 "nuclear pore" evidence=IEA;ISS
GO:0006913 "nucleocytoplasmic transport" evidence=IEA;ISS
GO:0017056 "structural constituent of nuclear pore" evidence=IEA
GO:0005487 "nucleocytoplasmic transporter activity" evidence=ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0009506 "plasmodesma" evidence=IDA
GO:0001510 "RNA methylation" evidence=RCA
UNIPROTKB|F1NNT9 NUP155 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NPS0 NUP155 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SN95 NUP155 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2181182 Nup155 "nucleoporin 155" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F6XTD9 NUP155 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D4A0V4 Nup155 "Nuclear pore complex protein Nup155" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MNT1 NUP155 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|621199 Nup155 "nucleoporin 155" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P37199 Nup155 "Nuclear pore complex protein Nup155" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030587001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (1378 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00034330001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (317 aa)
     •  0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1432
pfam03177559 pfam03177, Nucleoporin_C, Non-repetitive/WGA-negat 1e-51
pfam08801411 pfam08801, Nucleoporin_N, Nup133 N terminal like 6e-49
COG53081263 COG5308, NUP170, Nuclear pore complex subunit [Int 2e-28
COG53081263 COG5308, NUP170, Nuclear pore complex subunit [Int 4e-18
>gnl|CDD|217408 pfam03177, Nucleoporin_C, Non-repetitive/WGA-negative nucleoporin C-terminal Back     alignment and domain information 
 Score =  191 bits (488), Expect = 1e-51
 Identities = 125/607 (20%), Positives = 188/607 (30%), Gaps = 148/607 (24%)

Query: 777  RQRLPYSPAELAAI--EVRAMECIRQLLLRSAEAL-FLLQLLSQHHVTRLVQG------- 826
                        A+  E   +  + +L    +EAL FLL++L +   T+           
Sbjct: 36   TSSRSLDRQTELALLEEAEKLAALIKLWKSISEALSFLLEVLKEESKTKGQGENDTDIDF 95

Query: 827  --FDANLRQELVQLTFCQLVC-----SEEGDRLATRLISALMEYYTDPDGRGTVDDISGR 879
               D + +++L  LTF  L       S  G  L   LI++L+            D I+  
Sbjct: 96   FLSDVDRQEQLFTLTFEDLFTPLKSTSRSGKSLIKELIASLINLNILEGAFRYRDYIASA 155

Query: 880  LREGCPSYFKESDYKFFLAVECLERA--AVTSDSEEKENLAREAFNFLSKVPESAD---L 934
            LR  C S+          A E L  A      D E    L  EA     K  +S     L
Sbjct: 156  LRRRCGSFIS--------AEEELWTAKEIGLRDLEVLFELLLEALRLFEKAADSLSLENL 207

Query: 935  RTVCRRFEDLRFYEAVVRLPLQKAQAL-DPAGDAFNDQIDAA----------TREYALVQ 983
                 ++  L +Y   V L L  A+A  DPA DA     D                AL +
Sbjct: 208  EEAVVQYISLNYYAGAVELLLYVARARWDPAQDALKWVEDGRPLEWYNDQRRDLIKALAK 267

Query: 984  RQQCYEIITSALRSLKGDSSQREFGSPVRPAGPRSALDPASRKKYICQIVQLGVQSPDRI 1043
            R  CYE            S+                       +   +I +   +  D +
Sbjct: 268  RIGCYEEAFKLAEKYDDFSAL---------VEILVDGLSNEATELRERIYEYFEKFGDEL 318

Query: 1044 FHEYLYRTMI---DLGLENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITSAASLMGQT 1100
            F   LY   I     GL   LLE   P L  FLQ                          
Sbjct: 319  FAYALYDWYIEQGKQGLLLRLLEINTPFLTQFLQ-------------------------- 352

Query: 1101 GTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAI 1160
                     KY DLL  YY+ +  +  AA VL  LA   ++      TL +R + L   +
Sbjct: 353  -----EKSPKYADLLWIYYIKREDYAAAAEVLYSLALEEASSFTI--TLSKRIELLLRKL 405

Query: 1161 LQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSE 1220
                +  +   +         + LL  +E  L V + Q  +   LE +  + +   D   
Sbjct: 406  AALASENDGTPI--------LSELLSEIEELLEVAKIQKDL---LEQLLEADQRISDEKA 454

Query: 1221 STQNGSAPDSSSTTDANYAKIVREKAKELSLDLKSITQLYNEYAVPFELWE--------- 1271
            +                          +L   + S+T+L+N+YA+P E            
Sbjct: 455  AAAL----------------------AKLDGLILSLTKLFNDYALPAEYLIDLLTLMDPS 492

Query: 1272 ---------ICLEMLYFANYTGDADSSIIRETWARLIDQAL--------SKGGIAEACSV 1314
                     +CL +   A+Y    D  +IR  W RL+ +           K    E  S+
Sbjct: 493  TEFYLALRLLCLLIFALADYR---DKDLIRLIWRRLLLRDDWSASNDTEDKSDEYELLSL 549

Query: 1315 LKRVGSH 1321
                   
Sbjct: 550  KVTALGK 556

This is the C-termainl half of a family of nucleoporin proteins. Nucleoporins are the main components of the nuclear pore complex in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. Two nucleoporin classes are known: one is characterized by the FG repeat pfam03093; the other is represented by this family, and lacks any repeats. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore. Length = 559
>gnl|CDD|220023 pfam08801, Nucleoporin_N, Nup133 N terminal like Back     alignment and domain information
>gnl|CDD|227624 COG5308, NUP170, Nuclear pore complex subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227624 COG5308, NUP170, Nuclear pore complex subunit [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1432
KOG19001311 consensus Nuclear pore complex, Nup155 component ( 100.0
COG53081263 NUP170 Nuclear pore complex subunit [Intracellular 100.0
PF08801422 Nucleoporin_N: Nup133 N terminal like; InterPro: I 100.0
PF03177586 Nucleoporin_C: Non-repetitive/WGA-negative nucleop 100.0
KOG19001311 consensus Nuclear pore complex, Nup155 component ( 98.88
KOG41211128 consensus Nuclear pore complex, Nup133 component ( 97.42
KOG45211480 consensus Nuclear pore complex, Nup160 component [ 95.78
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 93.68
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 93.04
PF11715547 Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 91.42
KOG0319775 consensus WD40-repeat-containing subunit of the 18 90.31
KOG0646476 consensus WD40 repeat protein [General function pr 90.15
KOG0646476 consensus WD40 repeat protein [General function pr 90.11
PLN00181793 protein SPA1-RELATED; Provisional 89.8
KOG0315311 consensus G-protein beta subunit-like protein (con 88.21
KOG0289506 consensus mRNA splicing factor [General function p 86.29
KOG0291893 consensus WD40-repeat-containing subunit of the 18 85.1
KOG0279315 consensus G protein beta subunit-like protein [Sig 83.64
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 81.38
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-194  Score=1792.49  Aligned_cols=1202  Identities=32%  Similarity=0.448  Sum_probs=923.5

Q ss_pred             cchhhhcccccchhhhhhhhhhhccccCHHHHHhhccccCCCCCCCCCCCCCcccccccccCCHHHHHHHHhcCCccccc
Q 000546            5 EEILMRDVTNAGLVVSDRIGREVASQLDVEEALEASRYASHPYTTHPREWPPLVEVVDTWDLPTVLVERYNAAGGEGNAL   84 (1432)
Q Consensus         5 ~~~~~~~~~~a~~~~~d~~~~d~~~~pdl~~~l~~~~~~~~~y~~~~~~w~p~~~~~~~~~lP~ei~e~~n~~~~q~~~~   84 (1432)
                      .+.+..++....-...|++.+-..+-.++.+.+ +..|.+++++....+|+||.+. .+++||+||+|||+++  +|+|.
T Consensus         8 ~~~v~~hv~~~~~~~~~~i~~~t~~dl~~~p~~-gl~~~~~~~~~~L~~~~p~~~~-~v~~IP~el~eq~~~~--~~~~~   83 (1311)
T KOG1900|consen    8 VSGVEGHVTELLVLGSDFIGRLTMSDLKLTPVL-GLGYAFSYEVRGLPEFRPFYRQ-QVVNIPDELLEQFSNI--ECKTD   83 (1311)
T ss_pred             hhhhhhhhhhHHHhhhhhhhhhhhcCCCCCccc-ccccccccccCCCccCCceeec-ccccCCHHHHHHhcCc--ceeee
Confidence            344555554444455566655555444455554 4578888889888899999874 9999999999999999  99999


Q ss_pred             cccccccceeEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCC
Q 000546           85 CGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAG  164 (1432)
Q Consensus        85 mGlFpEI~rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~  164 (1432)
                      |||||||+|||+||||+||||||+++++ +++|||++|+|++|||||||||||+++|+||||||||+||+||||+|+...
T Consensus        84 mGiFpeI~RaWiTiDn~L~lWny~~~~e-~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~  162 (1311)
T KOG1900|consen   84 MGIFPEIGRAWITIDNNLFLWNYESDNE-LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFT  162 (1311)
T ss_pred             eccchhhcceEEEeCCeEEEEEcCCCCc-cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecccc
Confidence            9999999999999999999999998554 589999999999999999999999999999999999999999999998655


Q ss_pred             CCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCcEEEeecCCCEEEEEEecCCccc-cccceeeeccCcccccccccc
Q 000546          165 DGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWY-KRCRKVCHTAGVGNVISRWIV  243 (1432)
Q Consensus       165 ~~~~~~~el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~DG~lYEl~Yq~~~gWf-~rC~Kinht~g~~S~~~~~ll  243 (1432)
                      +      +...+++. |+|++||++|+||++|++|||||+|+||||||+.||.++||| +||+|||||+|..|.    +|
T Consensus       163 ~------~~~~f~~~-~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~----lv  231 (1311)
T KOG1900|consen  163 G------ELSIFNTS-FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSS----LV  231 (1311)
T ss_pred             C------cccccccc-eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHH----hh
Confidence            4      56678775 999999999999999999999999999999999999999999 999999999987777    47


Q ss_pred             Ccccc--cCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCCCCCCcceeeeecccccccccccCCcccccccCCCCCC
Q 000546          244 PNVFR--FGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRST  321 (1432)
Q Consensus       244 Ps~~~--~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (1432)
                      |++++  ++.+|+|.||+||++|+|||+|+++|+|++|+||++|.+.++.+ ++    .+..+..++.+. ..+ .+++.
T Consensus       232 Ps~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~-~~----~~~~i~~qa~~~-~~~-~~~s~  304 (1311)
T KOG1900|consen  232 PSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFV-SV----SRNYIDVQALSL-KNP-LDDSV  304 (1311)
T ss_pred             hhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeee-eh----hHHHHHHHhhhc-ccc-CCCcc
Confidence            77543  35789999999999999999999999999999999998884444 33    222222222111 112 77889


Q ss_pred             CCcEEEEEecCccCccceEEEEEecCceEEEEecCCCCCCCCCccCcCCCCCCCCCCCceEEEEEcCCCCCCCCCCCCcc
Q 000546          322 KPSVVSISPLSTLESKWLHLVAVLSDGRRMYLSTSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSPPLGVGGGLGFG  401 (1432)
Q Consensus       322 ~~~IvsI~pIs~~ES~~l~LVAVT~~G~RLYfs~~~~~~~~~~~~~~~g~~~~~~rP~~L~lvhvR~PP~~~~~~~~~~~  401 (1432)
                      +++||+|+||++.||.++||||+|++|+||||+++++..+.             .+|.   +..++.||+...     + 
T Consensus       305 f~~IvsI~~l~~~es~~l~LvA~ts~GvRlYfs~s~~r~~~-------------~~~~---~~s~~~~p~~~~-----~-  362 (1311)
T KOG1900|consen  305 FFSIVSISPLSASESNDLHLVAITSTGVRLYFSTSSGRQST-------------SAPF---LCSVKHTPTSNS-----L-  362 (1311)
T ss_pred             cceeEEecccCcccccceeEEEEecCCeEEEEeccCCCccc-------------cccc---ccccCCCCCCCC-----c-
Confidence            99999999999999999999999999999999998753221             1111   112222222110     0 


Q ss_pred             cccccccCCCCcccceeeeeeecCCcEEEeecCCCCCceEEEEecCCCCCCCC------------------CCCCCCccc
Q 000546          402 AISLAGRNQSDDISLKVETAYYSAGTLVLSDASPPTMSSLIIVSKDPSSQSYP------------------TGSLGTSAR  463 (1432)
Q Consensus       402 ~~~~~~~~~~~~~~~~v~~a~Ys~G~~l~~~~~~~~~d~l~~~s~d~~~~~~~------------------~~~~~~~~~  463 (1432)
                        ...+   ....|.+|+...+++|...++...++++..++|+...+....-+                  +....-...
T Consensus       363 --~q~s---~~p~pl~v~~~~~~~~~t~~a~t~~~~~~~~~~~~~~t~~~~~~~k~~~~lt~~~~~~~~~~s~~~~~l~~  437 (1311)
T KOG1900|consen  363 --EQTS---ISPPPLQVQNVRSSKGYTPAASTINSDNIELICVAKRTVLLLTLSKSSSSLTAIALVESVLLSCRSDELFV  437 (1311)
T ss_pred             --cccc---cCCCCceeeeeeccCCccccceeecCCCceEEEEcccchhcccccccccceEeecccceeeecccccceee
Confidence              0000   01123344444444444444444444444444444333211000                  000000001


Q ss_pred             ccccceeeEEeeecCCeeEEEeecCCCCCcccccccccccccccccccCCCcccccCCccccCCcccccccCCCceEEEE
Q 000546          464 ISRALRESVTSLPVEGRMLSVTDILPLPDTATTVQSLYSELEFCGFEISGESCEKSSGKLWARGDLSTQHILPRRRIVVF  543 (1432)
Q Consensus       464 ~~~~l~E~~~~~~~~g~~~~i~~v~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~k~~~~~~~~nela~Q~~~ppr~f~vL  543 (1432)
                      ..+...|..+-.|..+++..+.++-|.+....+.+.++.          -      .+-.+ .|+|++||..+|.+++++
T Consensus       438 s~~~~g~~~~~~~~~e~~~~~e~~~~~~~i~lt~q~~~~----------~------~~~~~-v~~l~~~~~s~~~~~~~~  500 (1311)
T KOG1900|consen  438 SAPDYGELKTHGPYTEQPASVEDVPPKEIILLTNQDIYT----------S------APLRY-VNVLASQYLSEPGKDAEL  500 (1311)
T ss_pred             eccchhhhhhcccccccccchhccCccceeeeecchhhh----------h------hhhhh-HHHHHHHHhcCCchhhhh
Confidence            122223333334444444444443233332222222221          0      11122 477888888888888888


Q ss_pred             eCCceEEEEEcChHHHHHHHHhhcCCchHHHHHHHhcChHHHHHHHHHHHcCcccCccccCHHHHHHHHHh---------
Q 000546          544 STMGMMEVVFNRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVAEKAAEA---------  614 (1432)
Q Consensus       544 Tn~Gi~i~~~~RPvDiL~~lL~~~~~~~~i~~Ff~~~G~~EacA~~L~LAc~~~~s~~~~~~~v~~~A~~a---------  614 (1432)
                      |+.++.++..|||.+++..++....      .|-..++..|||++|++..|....+...    ....|..+         
T Consensus       501 t~~~~~~~~~R~~~~v~~~li~~~~------~~~~~v~~~~~l~~~~y~~~~~~~s~~~----~gsn~~~~l~~~~~~~~  570 (1311)
T KOG1900|consen  501 TERSIYLYRYRRPIVVFLSLIKMPL------PFARYVDIWEALATALYGRELYEKSETL----EGSNAGMFLSEAAPGFS  570 (1311)
T ss_pred             ccceeEEEeeccHhHHHHHHhcCCC------cccCchHHHHHHHHHhhcchhhhhhccc----ccchhhhHhhccCCCcC
Confidence            8888888888888888888777765      4666667777777777777755433221    00001111         


Q ss_pred             ------------ccCCCCCCCcccccCccccccccCCCCCccccccccccceeccchhHHHHHHHhhhhhccCCcceeee
Q 000546          615 ------------FVDPRLVGMPQLEGSNALANTRTAAGGFSMGQVVQEAEPVFSGAYEGLCLCASRLLFPLWELPVMVVK  682 (1432)
Q Consensus       615 ------------f~~~~~~g~p~~~~~~~~~~~~~~~~g~~~g~v~~~~~~~~S~rh~Gl~Ly~sRLlrpiW~~~v~~~~  682 (1432)
                                  |..+..+|+|+++.+.+..+.++..+|       ...+++|||||+|||+|++||+|+||+.+|++..
T Consensus       571 ~~~~ks~~~~~~~~~~~~vg~~~~~~s~~i~~~~~~~p~-------~~~~iv~S~~h~Gl~l~isRll~~vW~~~v~~~~  643 (1311)
T KOG1900|consen  571 KVTLKSNREMFKFLSNPSVGMPQFDGSQPISTLSNSCPG-------ELDPIVLSGKHDGLALLISRLLRNVWEESVVNET  643 (1311)
T ss_pred             cCCcccchhccccccCCCCCcCccccCCCccccCCCCCc-------cCCCeEEeccccchhHHHHHHHHHHHHhHHHHHH
Confidence                        112222444444433222222211111       4467899999999999999999999999999862


Q ss_pred             cccccCCceEEEccChhhHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcCccccCCCCCCCCCchhhhhhccccc
Q 000546          683 GDAISENGVVVCRLSSGAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIRNLFGSY  762 (1432)
Q Consensus       683 ~~~~~~~~~i~~~~s~~~l~~l~~~L~~L~~Fl~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  762 (1432)
                       .  ++.+         +++.+.+.++.|+.|++.    +....+++.+++++.++.+.+++                ++
T Consensus       644 -~--s~~~---------~~~~l~s~~~sl~~~~~~----~~~y~gs~~~l~~~f~~~l~~~~----------------sf  691 (1311)
T KOG1900|consen  644 -M--SEKS---------KCHLLESFNRSLRSKRNQ----FSYYLGSITGLNEFFNSHLDSTN----------------SF  691 (1311)
T ss_pred             -h--hcch---------hhhhHHHhhHHHHhhhhh----cceeeccccccchhhhhcccccc----------------cc
Confidence             1  1211         577788888889998854    55667666777666555544333                33


Q ss_pred             cccCCCCCCCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhcCCHHHHHHhhcCCccc
Q 000546          763 SRNADSNGAGTSNKRQRLPYSPAELAAIEVRAMECIRQLLLRSAEALFLLQLLSQHHVTRLVQGFDANLRQELVQLTFCQ  842 (1432)
Q Consensus       763 ~~~~~~~~~~~~~~~~r~~~~~~ea~~~E~~Sl~~L~~Ll~~~~Ealsl~~iL~e~~~~~I~~~L~~~~q~~L~~ltF~d  842 (1432)
                      .+++..+    ..++++..++..+|+..|.+|+.++.+||.+.+|+ ++|.+|+.|+|++|++.++++.|+.|.++||+|
T Consensus       692 ~~~~~~n----~~~~~~le~~a~~A~~~e~~si~~~~~fl~~~~Ea-~l~~~l~~h~f~~Iv~els~~lqk~l~~ltF~d  766 (1311)
T KOG1900|consen  692 EGPTNGN----AEKAQQLESSAREALALELRSIKEILSFLLVLYEA-FLWFLLSQHHFIDIVSELSADLQKELSCLTFHD  766 (1311)
T ss_pred             cccccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHhCHHHHHHHHhccHHH
Confidence            3333333    33445555667889999999999999999999999 999999999999999999999999999999999


Q ss_pred             cccCcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhhCCCCCCccchhhhhHHHHHHHhhcCCChHHHHHHHHHHH
Q 000546          843 LVCSEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTSDSEEKENLAREAF  922 (1432)
Q Consensus       843 Lv~~~~G~~l~~~Li~aLIn~~i~~~g~~svd~Is~~Lr~~Cpsf~s~dD~~~~KA~E~L~~Ak~~~~~~~r~~~L~eAl  922 (1432)
                      ||++++ ++++++||.++||+||.+.  ++||.|+..||++||+||+++|+++|||.|+|++|+.+.+..++++++++++
T Consensus       767 l~~~nd-kel~~~li~slin~~i~s~--a~vd~vs~~Lre~Cps~~s~~D~l~ykA~E~L~~~~~~~~~~~ke~~~r~~l  843 (1311)
T KOG1900|consen  767 LFTSND-KELTKELLISLINRYIMSG--ASVDYVSELLRERCPSFCSASDILTYKAVELLENAAAKLEATIKELMLRESL  843 (1311)
T ss_pred             hcCcch-HHHHHHHHHHHHHHHhccC--CChhHHHHHHHHhCcccccchHHHHHHHHHHHHhhhhchhhhHHHHHHHHHH
Confidence            999988 9999999999999999985  5999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCCHHHHHHHHHhCcchHHHHHHHHHHHHhcCCCCCccc------------cCcchhhHHHHHHHHHHHHHH
Q 000546          923 NFLSKVPESADLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFN------------DQIDAATREYALVQRQQCYEI  990 (1432)
Q Consensus       923 ~Lf~kv~~~~~L~~vc~~~~~l~fy~GvVeL~L~~A~~~Dp~~~al~------------~~~~~~~r~~~~~~R~~cY~~  990 (1432)
                      +++.++.++++|+.+|.+|++++||+|+|++.+.+|.+.||+..+..            |....++|...|+.|..||.+
T Consensus       844 ~~~~~l~~~~~l~~~~~~lr~~~f~e~vv~~~~~~a~~~~~~~~~~~d~~~~e~~~~~~G~~~~~~R~~~y~~r~~~~~~  923 (1311)
T KOG1900|consen  844 SVATKLFNQVDLRLECADLRAERFYEGVVLLSLTKAVKSDPEGANDHDYKNQELAYDIIGISENDDRKVYYELRTLVYSL  923 (1311)
T ss_pred             HHHHHHhhhcchhhhHHHHHHHHHHHHhhhhhhhhhhhcChhhchhhhccccchHHHhcCccccChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998863            345578899999999999999


Q ss_pred             HHHHHHhhhcCCCcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCccccccccCCChH
Q 000546          991 ITSALRSLKGDSSQREFGSPVRPAGPRSALDPASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGPDLV 1070 (1432)
Q Consensus       991 I~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~al~S~DelFH~~LYdWLi~~~l~d~LLei~sP~Le 1070 (1432)
                      ||+.+++++....  ..++|..++    +.... +-.++.+++...++++||+||++||+||+.+++.|+||++.|||++
T Consensus       924 if~~l~~~~~~~~--~~q~~~~~n----s~~~~-a~~~~~~~~~~~~k~~d~lfh~~lydwL~~~~~~e~ll~i~sp~~~  996 (1311)
T KOG1900|consen  924 IFDTLDEADGSQS--ISQSPMKGN----SDSNF-AVGLILKSYMAILKSKDRLFHYALYDWLVAISLLEELLDIESPFIL  996 (1311)
T ss_pred             HHHHHHhhccccc--ccCCCCccc----ccchh-hhhhHHHHHHHHhhhcccccchhhHHHHHHhhHHHHHhcccCcccc
Confidence            9999999886422  122222221    33333 5678888999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCchhhhhhcccccccccccCCCCCCCCCchhhhHHHHHHHHHhhhcHHHHHHHHHHHhcccCCCCCCCCCHH
Q 000546         1071 PFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLD 1150 (1432)
Q Consensus      1071 ~yL~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~DLLWryy~k~~~~~~AA~VL~~LA~~~s~~s~~~isL~ 1150 (1432)
                      |||+|++..+                            ++++||||+||+|+++|.+||+||++||.     +.++|+|+
T Consensus       997 P~L~r~a~~d----------------------------lk~~dLLw~YY~K~e~~~~AA~VL~rLAt-----~~~~itLe 1043 (1311)
T KOG1900|consen  997 PYLKRMALSD----------------------------LKIFDLLWKYYEKREQFSQAAHVLYRLAT-----SSFDITLE 1043 (1311)
T ss_pred             HHHHHhhhcc----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCccHH
Confidence            9999998653                            88999999999999999999999999995     55789999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCccCCccccccchhhhhhHhHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCCC
Q 000546         1151 QRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDS 1230 (1432)
Q Consensus      1151 ~RIeYLsrAv~~aks~~~~~~~~g~~~~~~~~~~l~~Le~kleVaqiQ~~I~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 1230 (1432)
                      ||||||+||+++|||.+.     +++. +.+++|+.++|||||||.||.+|+.++.+.+..                   
T Consensus      1044 qRiEyLsRA~~~~~s~s~-----~s~~-~a~~qf~~~i~dklevA~iQ~dvl~a~~d~~~~------------------- 1098 (1311)
T KOG1900|consen 1044 QRIEYLSRAVGFAKSSSP-----SSSK-VAVGQFLIEIEDKLEVASIQDDVLVAMQDDRID------------------- 1098 (1311)
T ss_pred             HHHHHHHHHhhhcccCCC-----chhH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc-------------------
Confidence            999999999999999986     3333 348999999999999999999999988754322                   


Q ss_pred             CCccchhhHHHHHHHHHHhhhcCCCHHHHHHHhhccCCchhHHHHHhhhcCCCCCCChHHHHHHHHHHHHHHHhcCCHHH
Q 000546         1231 SSTTDANYAKIVREKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSKGGIAE 1310 (1432)
Q Consensus      1231 ~~~~d~~~~~~~~~~i~~L~~~Ll~it~LyndyA~p~~l~E~~L~Il~~a~~~~~~D~~lI~~~W~~ii~~~~~~~~~~e 1310 (1432)
                              +.++++++++||++|+|+|+|||||||||+||||||.|||||+|   +|+.+|+++|++||+++++++++..
T Consensus      1099 --------~~~~~el~k~Ld~el~~~t~Lyn~fAdPf~l~Ei~L~I~~~a~y---~D~~~I~~~W~~li~s~~~~~~~~~ 1167 (1311)
T KOG1900|consen 1099 --------ASAANELVKELDGELLSLTQLYNEFADPFDLWEICLSIFKCADY---SDPSLIQETWARLIDSALSQPGITS 1167 (1311)
T ss_pred             --------hhHHHHHHHHhccccccHHHHHHhccCcchHHHHHHHHhhhccC---CChHHHHHHHHHHHHHHHhcCCCcH
Confidence                    12478999999999999999999999999999999999999999   6999999999999999999885433


Q ss_pred             -----HHHHHHHhcccccCCCCccccHHHHHHHHHHHHHhhccccccCCCchhHHHHHHHhcCCCchhhHhhhcCCCCCC
Q 000546         1311 -----ACSVLKRVGSHMYPGDGAVLPLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVLNTYDQXXXXX 1385 (1432)
Q Consensus      1311 -----~~~~i~~LG~~~y~~~~~~FPl~~lv~~LE~~~~~~~~~~~~~~~~~~v~~~ll~a~~~~~e~~l~~Y~~L~~~~ 1385 (1432)
                           ..++|..++ +.|+..++.||..|.|.+||..+|++      .+|.   +..+.+ ||++.|.+|++|++++++.
T Consensus      1168 ~~~~~~~~~I~~~~-~~~~~~~~~~~~~F~i~~l~~~~~~~------~~d~---~~~~~a-~g~~~~~~L~ay~~~~~~~ 1236 (1311)
T KOG1900|consen 1168 EVLKRLGSKISNTL-KVYGKTDVDSEFVFPIAELESKVCEL------FFDE---PKELAA-CGSVIEPFLEAYVSLLKMY 1236 (1311)
T ss_pred             HHHhhHHHHHhhhh-hhhcCCcccCchhhhHHHHHHHHHHH------hccc---HHHHhh-hcccHHHHHHHHHHHHHHH
Confidence                 245677776 44555559999999999999999997      3333   344444 4899999999999999999


Q ss_pred             CCCCCcchhhhcccCccccccccccccccccchhhHHHHHHHH
Q 000546         1386 XXXYPVELFCRHQTSGYAFFDQCSWYLESGQCLYLQKEWVQAL 1428 (1432)
Q Consensus      1386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1428 (1432)
                      ...|.+..=.+|           ...+-..||.||+|+||+..
T Consensus      1237 ~vl~~~~~~~~~-----------~~~~~~ke~~~lv~~~~~~~ 1268 (1311)
T KOG1900|consen 1237 YVLWSLIERSEH-----------LVLVVIKEVTWLVKNWYQVS 1268 (1311)
T ss_pred             HHhhhhhcchhh-----------hHHHHHHHHHHHHhchhhhc
Confidence            999998876666           44555589999999999864

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins Back     alignment and domain information
>PF03177 Nucleoporin_C: Non-repetitive/WGA-negative nucleoporin C-terminal; InterPro: IPR007187 This is the C-terminal half of a family of nucleoporin proteins Back     alignment and domain information
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4121 consensus Nuclear pore complex, Nup133 component (sc Nup133) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1432
3i5p_A525 Nucleoporin NUP170; helical stack, membrane, mRNA 1e-93
3i5q_B252 Nucleoporin NUP170; helical stack, membrane, mRNA 6e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
3i4r_B644 Nuclear pore complex protein NUP133; protein trans 1e-04
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae} Length = 525 Back     alignment and structure
 Score =  312 bits (799), Expect = 1e-93
 Identities = 88/577 (15%), Positives = 180/577 (31%), Gaps = 117/577 (20%)

Query: 871  GTVDDISGRLREGCPSYFKESDYKFFLAVECLERA--AVTSDSEEKENLAREAFNFLSKV 928
             +++  +  L+E C S+   SD   F A+E L RA      + +      + A   L ++
Sbjct: 2    PSIEYTATALQERCGSFCSASDILGFRAIEHLRRAKEIGLRNYDSLNYHLKNATALLEQI 61

Query: 929  PES---ADLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAF----NDQIDAATREYAL 981
             +      L+        + +Y   +   L  A ++D    A     N  ++   R+   
Sbjct: 62   VDDLSIEKLKEAVSMMLSVNYYPKSIEFLLNIANSMDKGKLACQYVANGFLENDDRKQYY 121

Query: 982  VQRQQCYEIITSALRSLKGDSSQREFGSPVRPAGPRSALDPASRKKYICQIVQLGVQSPD 1041
             +R   Y+++   L  +   + +            + ++      K   +  +  ++  D
Sbjct: 122  DKRILVYDLVFDTLIKVDELAEK----KQSSKTQNQISISNDDEVKLRQKSYEAALKYND 177

Query: 1042 RIFHEYLYRTMIDLGLENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTG 1101
            R+FH ++Y  ++    E +LL+   P ++P+L                            
Sbjct: 178  RLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEK------------------------- 212

Query: 1102 TPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAIL 1161
                 +  K  ++L  YY  + +   +A +L RLA           TL +R ++LS A  
Sbjct: 213  ---AGSSLKISNILWVYYSRRSKFFESAEILYRLATSNF-----DITLFERIEFLSRANG 264

Query: 1162 QAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSES 1221
               + +                L   ++    V   Q  I   +   A       D    
Sbjct: 265  FCNSVSPLSQ------KQRIVQLASRIQDACEVAGIQGDILSLVYTDARIDSAIKD---- 314

Query: 1222 TQNGSAPDSSSTTDANYAKIVREKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFAN 1281
                                  E  K L   + S ++L+N++AVP    EI L +   A+
Sbjct: 315  ----------------------ELIKTLDGKILSTSELFNDFAVPLSYHEIALFIFKIAD 352

Query: 1282 YTGDADSSIIRETWARLIDQALSKGG-----------IAEACSVLKRVGSHMYPGDGAVL 1330
            +    D  +I   W  L      +             I    +VL ++G ++   +  + 
Sbjct: 353  FR---DHEVIMAKWDELFQSLRMEFNNTGKKEDSMNFINLLSNVLIKIGKNVQDSE-FIF 408

Query: 1331 PLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVLNTYDQXXXXXXXXYP 1390
            P+  L   +     E      E +    I    +     +   +     +          
Sbjct: 409  PIFELFPIVCNFFYET--LPKEHIVSGSIVSIFI-TAGVSFNKMYYILKE---------- 455

Query: 1391 VELFCRHQTSGYAFFDQCSWYLESGQCLYLQKEWVQA 1427
                     S           + + +  +L  EW ++
Sbjct: 456  ---LIETSDS--------DNSVFNKEMTWLIHEWYKS 481
>3i5q_B Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 2.20A {Saccharomyces cerevisiae} Length = 252 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3i4r_B Nuclear pore complex protein NUP133; protein transport, structural protein, kinetochore, mRNA transport, nucleus, phosphoprotein, translocation; 3.53A {Homo sapiens} Length = 644 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1432
d1tbga_340 beta1-subunit of the signal-transducing G protein 95.8
d1xksa_403 Nuclear pore complex protein Nup133 {Human (Homo s 95.72
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 95.45
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 94.54
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 93.73
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 91.94
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 87.54
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 84.91
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 81.05
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.80  E-value=0.048  Score=28.66  Aligned_cols=47  Identities=15%  Similarity=0.045  Sum_probs=27.8

Q ss_pred             CCCCCCCCCC-EEEEEEECEEEEEECCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             4333631246-26899809199996389999886335988626799951
Q 000546           83 ALCGIFPEIR-RAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLA  130 (1432)
Q Consensus        83 ~~mGlFPEI~-rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LV  130 (1432)
                      +-+-.-|.=+ -|=..-|..+.+||...+... ..+.+-...|.+|..-
T Consensus        59 ~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~-~~~~~~~~~v~~v~~~  106 (340)
T d1tbga_          59 YAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV-HAIPLRSSWVMTCAYA  106 (340)
T ss_dssp             EEEEECTTSSEEEEEETTTEEEEEETTTTEEE-EEEECSCSCEEEEEEC
T ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCCCEEE-EEEECCCCCEEEEEEE
T ss_conf             89999899999999978995556310210257-9972465337756760
>d1xksa_ b.69.14.1 (A:) Nuclear pore complex protein Nup133 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure