Citrus Sinensis ID: 000627

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380---
MRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKSDLDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRNSSEETSESNNLRRQISSSNRPTTLTKKVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEPGHLILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDFHEISELQNACSTLHWCKKALSFLSVSPSLEDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVISAPCKFKRCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPLRFGGKRSDLRMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFESCYLDKDLHVISNKLTITLKAREAAGVFDRQSNSALDFALARNLWRVRVSKLLEGLTKPTIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAEGENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAACKPQAEESSTPQNVDGGRTNAEFLEPKTPSPKHTNSRKKLRKAEPGLAQKMLAIANNSSVFDCSSGIDNLWWHNRKPFRRAAKKRTVLDSLCPFIYTQQ
cccccccHHHccccccccccccccHHHHHHcccccEEEccccccEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEccccccEEEccccccccccccccEEEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccEEEcccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHHccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccHHHHHHHHHHcccccccccccccccHHHHcccHHHHHHHHHcccccccccccccc
cccHcHHHHHHcccHHHHHHHHccHHHHHHccccEEEEcccccEEEEEccHHHHccccccccHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccHHHHHHHEEEEEEEEEEEccccccEEEEccHHHHccccccccEEEEEccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccHHHHHHccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcHccccccccccccEEEEEccccccEEEEEHHHHHHHHHHHcccccccHHHHHccccccHHHcccccHHHccccHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHHcccEEEEEEccccccccEEEEcccccEEEEccEcccccccEEEcccccccccccccccccccccccccccccccccccccccHHHHHccccccccEEEEEcccccccccccccHHcHHccccHHHHHHHHHHHHHHcccEEEEcc
mrsslpdlfdaqpDLLFQLVTMlnpsvlvengvpvysvlqepgnfvitfprsyhagfnfglncaeavnfapadwlphggfgadLYQQYHKAAVLSHEELLCVVAKsdldskvspyLKRELLRVYTKERMWRERLWRkgiikstpmgprkcpeyvgteedptciicrqyLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLtvdrnsseetsesnnlrrqisssnrpttltkkvkGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHkaenwsslpgsdsekVRLDCVNEllgfdplpcnepghlILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCIsnkcpaaiEIDVLYKLESEAldlkidvpETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNingrkdqhnVIDELNCILKegaslriqvddlpLVEVELKKAHCREKALKacdtkmpldFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARClldkddigdglsNSLVSKIEQLITSMESAANcglslgfdFHEISELQNACSTLHWCKKALSflsvspsledVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVIsapckfkrcklsdVEEVLAgckginfsfPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELgeaaafdcpeLEKVLSKVDKVENWKQRCKEIVgtsvgdknSLLGLLQKIKQSVHRSLYiynkphgsvsmtlcmccesdSKELEFLICSAckdcyhlqclrptevdrnhaeayicpycqyfesesvsqfggsplrfggkrsDLRMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFEscyldkdlHVISNKLTITLKAREaagvfdrqsnsaLDFALARNLWRVRVSKLLegltkptiGQIQNYLKEgllmnispkdhYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAEGENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIAcyqcdewyhidcvkllsapeiyicaackpqaeesstpqnvdggrtnaeflepktpspkhtnsrkklrkaEPGLAQKMLAIAnnssvfdcssgidnlwwhnrkpfrraakkrtvldslcpfiytqq
MRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKsdldskvspylkrellrvytkermwrerlwrkgiikstpmgprkCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRNSseetsesnnlrrqisssnrpttltkkvkgVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAenwsslpgsdseKVRLDCVNELLGFDPLPCNEPGHLILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHCREKAlkacdtkmplDFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDFHEISELQNACSTLHWCKKALSFLSVSPSLEDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVISAPCKFKRCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCPELEKVLskvdkvenWKQRCKEivgtsvgdknslLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPLRFGGKRSDLRMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFESCYLDKDLHVISNKLTITLKAREAagvfdrqsnsaLDFALARNLWRVRVSKllegltkptigQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELiaegenlpvyLEKELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAACKPQAEESSTPQNVDGGRTnaeflepktpspkhtnsrkkLRKAEPGLAQKMLAIANNSSVFDCSSGIDnlwwhnrkpfrraakkrtvldslcpfiytqq
MRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKSDLDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRnsseetsesnnLRRQISSSNRPTTLTKKVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEPGHLILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDFHEISELQNACSTLHWCKKALSFLSVSPSLEDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVISAPCKFKRCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPLRFGGKRSDLRMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFESCYLDKDLHVISNKLTITLKAREAAGVFDRQSNSALDFALARNLWRVRVSKLLEGLTKPTIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAEGENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAACKPQAEESSTPQNVDGGRTNAEFLEPKTPSPKHTNSRKKLRKAEPGLAQKMLAIANNSSVFDCSSGIDNLWWHNRKPFRRAAKKRTVLDSLCPFIYTQQ
********FDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKSDLDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTV******************************VKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSL*****EKVRLDCVNELLGFDPLPCNEPGHLILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDFHEISELQNACSTLHWCKKALSFLSVSPSLEDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVISAPCKFKRCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPLRFGGKRSDLRMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFESCYLDKDLHVISNKLTITLKAREAAGVFDRQSNSALDFALARNLWRVRVSKLLEGLTKPTIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAEGENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAAC*************************************************MLAIANNSSVFDCSSGIDNLWWHNRKPFRRAAKKRTVLDSLCPFIY***
**SSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKSDLDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRNSSEETS**********************************************************EAEQ*LWAGFEMDAVR***************************************DCVNELLGFDPLPCNEPGHLILQNYAEEARSLIQEIN**********ELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCI******AIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILV*****KDQHNVIDEL******************LVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAV**************************************EFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDI*****************************GFDFHEISELQNACSTLHW***********PSLEDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEV************SDVEEVLAGCKG*NFSFPVVIGELTSAIQKHKLWQEQV***************************************************************************************SVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRP**********YICPYCQYFESESV****************LRMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFESCYLDKD*HVISNKLT*************************************************************************************************************************ARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAAC**********************************************************VFDCSSGIDNLWWH***************DSLCPFIYTQQ
MRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKSDLDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDR*****************SSNRPTTLTKKVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEPGHLILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDFHEISELQNACSTLHWCKKALSFLSVSPSLEDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVISAPCKFKRCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPLRFGGKRSDLRMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFESCYLDKDLHVISNKLTITLKAREAAGVFDRQSNSALDFALARNLWRVRVSKLLEGLTKPTIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAEGENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAACKP************GGRTNAEFLEPK**************KAEPGLAQKMLAIANNSSVFDCSSGIDNLWWHNRKPFRRAAKKRTVLDSLCPFIYTQQ
**SSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKSDLDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRNSSEETSESNNLRRQISSSNRPTTLTKKVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEPGHLILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDFHEISELQNACSTLHWCKKALSFLSVSPSLEDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVISAPCKFKRCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPLRFGGKRSDLRMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFESCYLDKDLHVISNKLTITLKAREAAGVFDRQSNSALDFALARNLWRVRVSKLLEGLTKPTIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAEGENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAACKPQA***************************************PGLAQKMLAIANNSSVFDCSSGIDNLWWHNRKPFRRAAKKRTVLDSLCPFIYTQQ
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKSDLDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRNSSEETSESNNLRRQISSSNRPTTLTKKVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEPGHLIxxxxxxxxxxxxxxxxxxxxxCSKISELELLYSRASGLPICIVESEKLSQRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDFHEISELQNACSTLHWCKKALSFLSVSPSLEDVESLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVISAPCKFKRCKLSDVEEVLAGCKGINFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCPELEKVLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPLRFGGKRSDLRMLIELLSDSEFFCRGIEAKDVLQEVVDVALECKTCLTDIVKFESCYLDKDLHVISNKLTITLKAREAAGVFDRQSNSALDFALARNLWRVRVSKLLEGLTKPTIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAEGENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAACKPQAEESSTPQNVDGGRTNAEFLEPKTPSPKHTNSRKKLRKAEPGLAQKMLAIANNSSVFDCSSGIDNLWWHNRKPFRRAAKKRTVLDSLCPFIYTQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1383 2.2.26 [Sep-21-2011]
P412301554 Lysine-specific demethyla yes no 0.383 0.341 0.298 2e-49
Q30DN61545 Lysine-specific demethyla yes no 0.361 0.323 0.287 5e-49
P412291560 Lysine-specific demethyla no no 0.375 0.333 0.289 1e-48
A1YVX41516 Lysine-specific demethyla yes no 0.375 0.342 0.287 2e-48
Q38JA71556 Lysine-specific demethyla yes no 0.375 0.333 0.287 2e-48
P293751690 Lysine-specific demethyla no no 0.372 0.304 0.290 1e-47
Q3UXZ91690 Lysine-specific demethyla no no 0.370 0.303 0.294 3e-46
Q6IQX01503 Lysine-specific demethyla no no 0.286 0.263 0.293 1e-43
Q5F3R21522 Lysine-specific demethyla no no 0.368 0.335 0.278 5e-43
Q80Y841544 Lysine-specific demethyla no no 0.151 0.136 0.419 2e-42
>sp|P41230|KDM5C_MOUSE Lysine-specific demethylase 5C OS=Mus musculus GN=Kdm5c PE=2 SV=4 Back     alignment and function desciption
 Score =  199 bits (505), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 175/587 (29%), Positives = 290/587 (49%), Gaps = 57/587 (9%)

Query: 1    MRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFG 60
            M+   P+LFD+QPDLL QLVT++NP+ L+ +GVPV    Q  G FVITFPR+YH+GFN G
Sbjct: 549  MKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQG 608

Query: 61   LNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVA--KSDLDSKVSPYLKR 118
             N AEAVNF  ADWLP G    + Y++  +  V SHEEL+C +A     LD  ++  + +
Sbjct: 609  YNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHK 668

Query: 119  ELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRC 178
            E+  +  +ER  R+ L  KGI ++     R+  E +  +E   CI C+   +LSA+AC  
Sbjct: 669  EMFIMVQEERRLRKALLEKGITEAE----REAFELLPDDER-QCIKCKTTCFLSALACYD 723

Query: 179  RPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRNSSEETSESNNLRRQISS 238
             P   VCL H   LC+C + + +L YR+TL EL  +   +   +    + +N +R  +  
Sbjct: 724  CPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVALEV 783

Query: 239  SNRPTTLTKKVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMD 298
             +      + ++ +R   S+  E+    S ++LQ L         L EAE  +     + 
Sbjct: 784  ED---GRKRSLEELRALESEARERRFPNS-ELLQRL------KNCLSEAEACVSRALGLV 833

Query: 299  AVRDMVNKLIEGRRWAEG-IRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEP 357
            + ++     + G +     +RD L +  N             L C    +G      +  
Sbjct: 834  SGQEAGPDRVAGLQMTLAELRDFLGQMNN-------------LPCAMHQIG------DVK 874

Query: 358  GHL-ILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSA 416
            G L  ++ Y  EAR       A +S  S    L+ L  R   L + + E+++L +++  A
Sbjct: 875  GILEQVEAYQTEAR------EALVSQPSSPGLLQSLLERGQQLGVEVPEAQQLQRQVEQA 928

Query: 417  KVWRDSVRKCI---SNKCPAAIEIDVLYKLESEALDLKIDVPETDM--LLKMIGQAESCR 471
            + W D V++ +   + +   AI   +L    S A    +D  + ++  LL +  + E   
Sbjct: 929  R-WLDEVKRTLAPSARRGTLAIMRGLLVAGASVAPSPAVDKAQAELQELLTIAERWEEKA 987

Query: 472  ARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGR 531
              C EA R      T+E ++ E  +  V++P ++ LK+  + A  WIA +++I    NG 
Sbjct: 988  HLCLEA-RQKHPPATLEAIIHEAENIPVHLPNIQSLKEALAKARAWIADVDEIQ---NG- 1042

Query: 532  KDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKAHC-REKALKA 577
             D +  +D+L  ++  G  L + +++L  +E+++  AH  REKA K 
Sbjct: 1043 -DHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKT 1088
Histone demethylase that specifically demethylates 'Lys-4' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-9', H3 'Lys-27', H3 'Lys-36', H3 'Lys-79' or H4 'Lys-20'. Demethylates trimethylated and dimethylated but not monomethylated H3 'Lys-4'. Participates in transcriptional repression of neuronal genes by recruiting histone deacetylases and REST at neuron-restrictive silencer elements.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q30DN6|KDM5D_CANFA Lysine-specific demethylase 5D OS=Canis familiaris GN=KDM5D PE=2 SV=1 Back     alignment and function description
>sp|P41229|KDM5C_HUMAN Lysine-specific demethylase 5C OS=Homo sapiens GN=KDM5C PE=1 SV=2 Back     alignment and function description
>sp|A1YVX4|KDM5C_PIG Lysine-specific demethylase 5C OS=Sus scrofa GN=KDM5C PE=2 SV=1 Back     alignment and function description
>sp|Q38JA7|KDM5C_CANFA Lysine-specific demethylase 5C OS=Canis familiaris GN=KDM5C PE=2 SV=1 Back     alignment and function description
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3 Back     alignment and function description
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2 Back     alignment and function description
>sp|Q6IQX0|KD5BB_DANRE Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2 Back     alignment and function description
>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1 Back     alignment and function description
>sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1383
297742526 1495 unnamed protein product [Vitis vinifera] 0.973 0.901 0.580 0.0
356540444 1826 PREDICTED: uncharacterized protein LOC10 0.984 0.745 0.567 0.0
356495676 1849 PREDICTED: uncharacterized protein LOC10 0.975 0.729 0.552 0.0
357481615 1832 Lysine-specific demethylase 5D [Medicago 0.987 0.745 0.556 0.0
357481613 1836 Lysine-specific demethylase 5D [Medicago 0.987 0.744 0.555 0.0
449452470 1843 PREDICTED: uncharacterized protein LOC10 0.994 0.746 0.536 0.0
449495879 1845 PREDICTED: LOW QUALITY PROTEIN: lysine-s 0.995 0.746 0.532 0.0
359474011 1539 PREDICTED: uncharacterized protein LOC10 0.775 0.696 0.618 0.0
357481617 1586 Lysine-specific demethylase 5D [Medicago 0.803 0.700 0.564 0.0
224071864 1503 jumonji domain protein [Populus trichoca 0.579 0.533 0.624 0.0
>gi|297742526|emb|CBI34675.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1577 bits (4084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 823/1417 (58%), Positives = 1017/1417 (71%), Gaps = 70/1417 (4%)

Query: 1    MRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFG 60
            MR+ LPDLFDAQPDLLFQLVTML+PSVL ENGV VYSV+QEPGNFVITFPRSYH GFNFG
Sbjct: 114  MRNCLPDLFDAQPDLLFQLVTMLDPSVLQENGVSVYSVIQEPGNFVITFPRSYHGGFNFG 173

Query: 61   LNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKS-DLDSKVSPYLKRE 119
            LNCAEAVNFAPADWLPHGGFGA+LYQ Y KAAVLSHEELLCVVAK+ D DSK  PYLK+E
Sbjct: 174  LNCAEAVNFAPADWLPHGGFGAELYQLYRKAAVLSHEELLCVVAKANDCDSKALPYLKKE 233

Query: 120  LLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRCR 179
            L R+Y KE+  RE LW  GIIKS+PM P+KCPE+VGTEEDPTCIIC+QYL+LSAV C CR
Sbjct: 234  LHRIYAKEKNCREGLWSNGIIKSSPMSPKKCPEFVGTEEDPTCIICQQYLFLSAVVCCCR 293

Query: 180  PAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRNSSEETSESNNLRRQISSS 239
            P+AFVCLEH +HLCECK  K  LLYRHTLAEL  L L +D+ + +ET +  +L+RQ+S S
Sbjct: 294  PSAFVCLEHCKHLCECKPNKHRLLYRHTLAELKQLVLLIDKYNFDETPQCRDLQRQLSCS 353

Query: 240  NRPTTLTKKVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDA 299
            +    LTKKVKG  V++++L E+W+  S K+ Q  FS DAY   L+E EQFLWAG EMDA
Sbjct: 354  DDSNALTKKVKGGHVSLAKLAEEWILRSSKIFQIPFSRDAYVNALKETEQFLWAGSEMDA 413

Query: 300  VRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEPGH 359
            VR +   LIE + WAEGI+DCL K E+WS     + EKV L+ VN  L  +PLPC EPGH
Sbjct: 414  VRAVAKNLIEAQNWAEGIKDCLCKIESWSCNRSHNLEKVDLEHVNNFLNLNPLPCIEPGH 473

Query: 360  LILQNYAEEARSLIQEINAALSACSK--ISELELLYSRASGLPICIVESEKLSQRISSAK 417
            L L+ YAEEA  L+QEI++ALS  SK  I ELE LYSRA  +PI + E EKL  RIS+ K
Sbjct: 474  LKLKGYAEEAMILVQEIDSALSTSSKSSIPELEQLYSRACEVPIYVKEMEKLMARISALK 533

Query: 418  -----------------------------VWRDSVRKCISNKCPAAIEIDVLYKLESEAL 448
                                         VW D+V+KCI  KCPAAIE+DVLY+L+SE L
Sbjct: 534  MVINIIAWFSDSFFLSNLMILMKFFHPLFVWVDNVKKCILEKCPAAIEVDVLYRLKSEML 593

Query: 449  DLKIDVPETDMLLKMIGQAESCRARCSEALRGSMSLKTVELLLQELGDFTVNMPELELLK 508
            +L++ +PE +ML+ ++   ESC+ARC+E L G ++LK VE+LLQEL   TVN+PEL+LL+
Sbjct: 594  ELQVQLPEVEMLMDLLRHVESCQARCNEILNGPINLKNVEVLLQELESITVNIPELKLLR 653

Query: 509  QYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVELKKA 568
            QYH DA+ WI+  ND+ VNI+ R+DQ NV+DEL CILK+G  LRIQVD+LPLVEVELKKA
Sbjct: 654  QYHGDAVSWISHFNDVHVNIHEREDQENVVDELQCILKQGLLLRIQVDELPLVEVELKKA 713

Query: 569  HCREKALKACDTKMPLDFIRQVTAEAVILQIEREKLFIDLSGVLAAAMRWEERAADILIH 628
            +CR++ALKA  TKM L  I+Q+  EA +LQIE E+LF+D+SGVLAAAM WEERAA I   
Sbjct: 714  YCRKEALKARRTKMTLFSIQQLMEEAAMLQIEGEQLFVDVSGVLAAAMHWEERAAHIFAT 773

Query: 629  KAQMCEFEDIIRASQDIFVVLPSLDEVQNEISTAKSWLKNSELFLASAFAVAPASCSLLR 688
            +AQM +FED+IR S+DI V+LPSLD+V++ IS AKSWLKNS+ FL S+F  A  SCSLL+
Sbjct: 774  EAQMSDFEDVIRTSKDIHVILPSLDDVKDAISMAKSWLKNSKPFLGSSFPAAHPSCSLLK 833

Query: 689  LESLKDLVSQSKFLKISLKEQTELEKVINNCERWQNHASSLLQDARCLLDKDDIGDGLSN 748
            +E+LK+LVSQSK LKISL+E+T +  V+ NC  W++ + SLL++  CL + ++I + L N
Sbjct: 834  VEALKELVSQSKLLKISLEERTMIHSVLKNCLEWEHDSCSLLEEVDCLFNTNNIDNALIN 893

Query: 749  SLVSKIEQLITSMESAANCGLSLGFDFHEISELQNACSTLHWCKKALSFLSVSPSLEDVE 808
             L+ KIE L+T +ES    GLSLGFDF EI +LQNA S L WC KALSF SV+P+L  +E
Sbjct: 894  GLIPKIEHLVTMIESILETGLSLGFDFDEIPKLQNARSILQWCSKALSFCSVAPALPGIE 953

Query: 809  SLMAVAEGLSTRCFSSMLWNSLIHGVKWLKRALEVISAPCKFKRCKLSDVEEVLAGCKGI 868
            SLM  AE L   C SS L +SLI GVKWLK+A EVI   C  K CKLSD EEVL+  + I
Sbjct: 954  SLMENAEHLPVTCASSALCSSLIDGVKWLKKASEVIPVSCNGKICKLSDAEEVLSEVQRI 1013

Query: 869  NFSFPVVIGELTSAIQKHKLWQEQVHQFFNLKCAQQSWSLMLQLKELGEAAAFDCPELEK 928
              SFP+++G+L  AI+KHKLW+EQ+  FF LK  ++SWS +LQLK +             
Sbjct: 1014 KVSFPLMVGQLLKAIEKHKLWKEQILIFFGLKTEERSWSKLLQLKVI------------- 1060

Query: 929  VLSKVDKVENWKQRCKEIVGTSVGDKNSLLGLLQKIKQSVHRSLYIYNKPHGSVSMTLCM 988
                          C    G S          + +IK ++ RSLYIY K  G      C+
Sbjct: 1061 -------------ICFMYFGISFN--------VIQIKHTLDRSLYIYKKSRGCNPRDPCI 1099

Query: 989  CCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQFGGSPL 1048
             C SD K+ E L CS CKDCYHLQCL  T   ++ AEAY+C YCQ+  S S+S+ GG+ L
Sbjct: 1100 HCFSDIKDQELLTCSICKDCYHLQCLGATLGHQSDAEAYVCSYCQFIGSGSISRNGGA-L 1158

Query: 1049 RFGGKRSDLRMLIELLSDSEFFCRG--IEAKDVLQEVVDVALECKTCLTDIVKFESCYLD 1106
            RFGGKR +L MLIELLSD+E  C G  IE +DV+Q++V++A+ CK CLT++  F   YL+
Sbjct: 1159 RFGGKRPELNMLIELLSDAEGLCVGCVIEERDVVQQLVELAIACKDCLTELTDFTLAYLN 1218

Query: 1107 KDLHVISNKLTITLKAREAAGVFDRQSNSALDFALARNLWRVRVSKLLEGLTKPTIGQIQ 1166
            +DL +IS KLT  LKA E AGV+    N+ L+ ALARN WRVRV+KLLE   KP I  IQ
Sbjct: 1219 RDLSIISEKLTTALKAVEMAGVYYNHGNNRLELALARNSWRVRVNKLLEDSQKPLIQHIQ 1278

Query: 1167 NYLKEGLLMNISPKDHYRQKLMELNRIGSQWADVAKKVVLDSGALSLDKVFELIAEGENL 1226
              LKEGL ++I P+DH+RQKL EL  IG QWA+ AKKV +DSGAL LD+V ELI +GENL
Sbjct: 1279 KILKEGLAISIPPEDHFRQKLTELKCIGLQWAENAKKVSMDSGALGLDEVCELITQGENL 1338

Query: 1227 PVYLEKELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAPEIYICAACK 1286
            PV+ EKELK LRARSMLYCICRKPYD++AMIAC QCDEWYH DC+KL SAP+IYIC ACK
Sbjct: 1339 PVHFEKELKLLRARSMLYCICRKPYDQRAMIACDQCDEWYHFDCIKLSSAPKIYICPACK 1398

Query: 1287 PQAEESSTPQNVDGGR-TNAEFLEPKTPSPKHTNSRKKLRKAEPGLAQKMLAIANNSSVF 1345
            P   E S   +V+  R T A++ EP+TPSP HT SR+K  +A+P L Q M A  ++ ++ 
Sbjct: 1399 PHTGELSVLLSVNKERSTGAKYGEPQTPSPPHTESRRKNIEAKPSLKQMMPAAMDHGNIL 1458

Query: 1346 DCSSGIDNLWWHNRKPFRRAAKKRTVLDSLCPFIYTQ 1382
              S GID L+W NRKPFRR AK+R  ++SL PF + Q
Sbjct: 1459 RYSDGIDCLFWRNRKPFRRVAKRRAEVESLSPFFHIQ 1495

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356540444|ref|XP_003538699.1| PREDICTED: uncharacterized protein LOC100789512 [Glycine max] Back     alignment and taxonomy information
>gi|356495676|ref|XP_003516700.1| PREDICTED: uncharacterized protein LOC100819576 [Glycine max] Back     alignment and taxonomy information
>gi|357481615|ref|XP_003611093.1| Lysine-specific demethylase 5D [Medicago truncatula] gi|355512428|gb|AES94051.1| Lysine-specific demethylase 5D [Medicago truncatula] Back     alignment and taxonomy information
>gi|357481613|ref|XP_003611092.1| Lysine-specific demethylase 5D [Medicago truncatula] gi|355512427|gb|AES94050.1| Lysine-specific demethylase 5D [Medicago truncatula] Back     alignment and taxonomy information
>gi|449452470|ref|XP_004143982.1| PREDICTED: uncharacterized protein LOC101216734 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449495879|ref|XP_004159972.1| PREDICTED: LOW QUALITY PROTEIN: lysine-specific demethylase 5C-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359474011|ref|XP_003631389.1| PREDICTED: uncharacterized protein LOC100261599 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357481617|ref|XP_003611094.1| Lysine-specific demethylase 5D [Medicago truncatula] gi|355512429|gb|AES94052.1| Lysine-specific demethylase 5D [Medicago truncatula] Back     alignment and taxonomy information
>gi|224071864|ref|XP_002303585.1| jumonji domain protein [Populus trichocarpa] gi|222841017|gb|EEE78564.1| jumonji domain protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1383
TAIR|locus:20312901116 AT1G63490 [Arabidopsis thalian 0.608 0.754 0.491 9.2e-267
ZFIN|ZDB-GENE-030131-53791483 kdm5ba "lysine (K)-specific de 0.151 0.141 0.423 3.4e-52
UNIPROTKB|Q9UGL11544 KDM5B "Lysine-specific demethy 0.151 0.135 0.416 1.9e-50
UNIPROTKB|F1PJS31476 KDM5B "Uncharacterized protein 0.151 0.141 0.421 2.9e-50
UNIPROTKB|Q30DN61545 KDM5D "Lysine-specific demethy 0.148 0.133 0.436 1.3e-49
MGI|MGI:997801548 Kdm5d "lysine (K)-specific dem 0.148 0.133 0.436 2.8e-49
UNIPROTKB|F1MUR21484 KDM5B "Uncharacterized protein 0.151 0.140 0.416 7.1e-49
UNIPROTKB|F1NRC41510 KDM5B "Lysine-specific demethy 0.151 0.138 0.425 9.4e-49
UNIPROTKB|F1NUR91521 KDM5B "Lysine-specific demethy 0.151 0.137 0.425 9.7e-49
UNIPROTKB|Q5F3R21522 KDM5B "Lysine-specific demethy 0.151 0.137 0.425 9.8e-49
TAIR|locus:2031290 AT1G63490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2114 (749.2 bits), Expect = 9.2e-267, Sum P(3) = 9.2e-267
 Identities = 423/861 (49%), Positives = 598/861 (69%)

Query:     1 MRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFG 60
             MR +LPDLFDAQPDLLFQLVTML+P+VL EN VPVY+VLQEPGNFVITFP+S+HAGFNFG
Sbjct:   114 MRKTLPDLFDAQPDLLFQLVTMLSPTVLQENKVPVYTVLQEPGNFVITFPKSFHAGFNFG 173

Query:    61 LNCAEAVNFAPADWLPHGGFGADLYQQYHKAAVLSHEELLCVVAKSDL-DSKVSPYLKRE 119
             LNCAEAVNFA ADWLP+GG GA+LY+ Y K +V+SHEELLCVVAK +  +++ S +LK+E
Sbjct:   174 LNCAEAVNFATADWLPYGGSGAELYRLYRKPSVISHEELLCVVAKGNCCNNEGSIHLKKE 233

Query:   120 LLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQYLYLSAVACRCR 179
             LLR+Y+KE+ WRE+LW+ GI++S+PM   +C + VG EEDPTCIIC+Q+L+LSA+ C CR
Sbjct:   234 LLRIYSKEKTWREQLWKSGILRSSPMFVPECADSVGIEEDPTCIICQQFLHLSAIVCNCR 293

Query:   180 PAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDRXXXXXXXXXXXLRRQISSS 239
             P+ F CLEHW+HLCEC+  KL L YR+TLAEL  +   V++            +R  S +
Sbjct:   294 PSVFACLEHWKHLCECEPTKLRLEYRYTLAELDMMVQEVEKFGGCKTQETKISQRPSSGT 353

Query:   240 NRPTTLTKKVKGVRVTMSQLVEQWLSCSLKVLQGLFSSDAYGTLLREAEQFLWAGFEMDA 299
              R   L KK +G++V+ ++  ++WL  + KVL   FSS  Y TLL+E+EQFLWAG EMD 
Sbjct:   354 KRSIALNKKQEGMQVSQARPADKWLLRASKVLDAAFSSVEYATLLKESEQFLWAGSEMDR 413

Query:   300 VRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPGSDSEKVRLDCVNELLGFDPLPCNEPGH 359
             VRD+   L + + WAE + DCL K E   +    DS KV L+ ++ELL  +P+PC   G+
Sbjct:   414 VRDVTKSLNKAKIWAEAVSDCLSKVEGEVN---DDSMKVHLEFIDELLRVNPVPCFNSGY 470

Query:   360 LILQNYAEEARSLIQEINAALSACSKISELELLYSRASGLPICIVESEKLSQRISSAKVW 419
             L L++YAEEAR L ++I++ALS+   I++LELL+S  S  PI + + E LS++ISSAK+ 
Sbjct:   471 LKLKDYAEEARKLSEKIDSALSSSPTITQLELLHSEVSRSPISLKKHEILSKKISSAKML 530

Query:   420 RDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPETDMLLKMIGQAESCRARCSEALR 479
                 ++ +++  P  IE+D L+KL SE L+L + +PET+ +L ++ ++ES R + ++ L 
Sbjct:   531 AKRAKRYLTDAKPPGIEMDALFKLNSEMLELHVQLPETEGILDLVKKSESARDKSNKVLT 590

Query:   480 GSMSLKTVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVID 539
             GS+SL+ VE LL E   F++N+PEL +L+QYH D + WI+R ND++V++   KDQ  +I 
Sbjct:   591 GSLSLENVEELLHEFDSFSINVPELNILRQYHVDTLSWISRFNDVMVDVREGKDQRKLIS 650

Query:   540 ELNCILKEGASLRIQVDDLPLVEVELKKAHCREKALKACDTKMPLDFIRQVTAEAVILQI 599
             +L+ +L++GASL IQV+ LPLVEVELKKA CREKA      +  LDFI Q+ +EAVIL I
Sbjct:   651 DLSSLLRDGASLGIQVEGLPLVEVELKKASCREKARTVYTARKSLDFIEQLLSEAVILHI 710

Query:   600 EREKLFIDLSGVLAAAMRWEERAADILIHKAQMCEFEDIIRASQDIFVVLPSLDEVQNEI 659
             E E++F+++SG+L+ A  WEERA+ IL ++ QM E +D++R S +I  VLP+L  ++N I
Sbjct:   711 EEEEIFVEISGILSTARCWEERASTILENETQMYELKDLVRMSVNIDAVLPTLQGIENTI 770

Query:   660 STAKSWLKNSELFLASAFAVAPASCSLLRLESLKDLVSQSKFLKISLKEQTELEKVINNC 719
             S+A++WL+ SE FL++  ++A + CS+L L  LKDLV+Q+K L + L+E   LE ++ NC
Sbjct:   771 SSAETWLQKSEPFLSATSSMASSPCSMLELPVLKDLVTQAKLLNVQLQEPRILETLLLNC 830

Query:   720 ERWQNHASSLLQDARCLLDKDDIGDGLSNSLVSKIEQLITSMESAANCGLSLGFDFHEIS 779
             ERWQ     LLQ+   LLD   I DG  ++++ KI  LIT ++SA   GL+LG +F E+ 
Sbjct:   831 ERWQCDNHQLLQETEDLLDNAKIDDGTHSNILPKIMDLITRVDSARRSGLALGLNFDELP 890

Query:   780 ELQNACSTLHWCKKALSFLSVSPS---LEDV--ESLMAVA----EGLSTRCFSS--MLWN 828
             +L+ A   L WC K ++  S SP+   LEDV   SL  +     EG +         L  
Sbjct:   891 KLRTASLKLGWCCKTITLSSSSPTSELLEDVGKPSLQHIQQHLKEGQTLEILPEEYYLGK 950

Query:   829 SLIH----GVKWLKRALEVIS 845
              L+     G++W KRA +V++
Sbjct:   951 RLMELKDTGLEWAKRARKVVT 971
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
ZFIN|ZDB-GENE-030131-5379 kdm5ba "lysine (K)-specific demethylase 5Ba" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UGL1 KDM5B "Lysine-specific demethylase 5B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PJS3 KDM5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q30DN6 KDM5D "Lysine-specific demethylase 5D" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:99780 Kdm5d "lysine (K)-specific demethylase 5D" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MUR2 KDM5B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NRC4 KDM5B "Lysine-specific demethylase 5B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NUR9 KDM5B "Lysine-specific demethylase 5B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3R2 KDM5B "Lysine-specific demethylase 5B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1383
pfam02373114 pfam02373, JmjC, JmjC domain, hydroxylase 7e-24
pfam0292854 pfam02928, zf-C5HC2, C5HC2 zinc finger 6e-16
pfam08429335 pfam08429, PLU-1, PLU-1-like protein 6e-16
pfam08429335 pfam08429, PLU-1, PLU-1-like protein 2e-14
pfam08429335 pfam08429, PLU-1, PLU-1-like protein 9e-12
pfam0062851 pfam00628, PHD, PHD-finger 8e-07
smart0024947 smart00249, PHD, PHD zinc finger 9e-07
pfam08429335 pfam08429, PLU-1, PLU-1-like protein 1e-05
pfam0062851 pfam00628, PHD, PHD-finger 2e-05
smart0024947 smart00249, PHD, PHD zinc finger 6e-05
COG5034271 COG5034, TNG2, Chromatin remodeling protein, conta 4e-04
>gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase Back     alignment and domain information 
 Score = 97.4 bits (243), Expect = 7e-24
 Identities = 35/64 (54%), Positives = 42/64 (65%)

Query: 6   PDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAE 65
                 QPDLL  L T+++P  L+ENG+PVY  +Q+PG FV TFP  YH  FN G N AE
Sbjct: 51  KHNGGEQPDLLLHLNTIISPKQLLENGIPVYRFVQKPGEFVFTFPGWYHQVFNLGFNIAE 110

Query: 66  AVNF 69
           AVNF
Sbjct: 111 AVNF 114

The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. Length = 114
>gnl|CDD|217292 pfam02928, zf-C5HC2, C5HC2 zinc finger Back     alignment and domain information
>gnl|CDD|219836 pfam08429, PLU-1, PLU-1-like protein Back     alignment and domain information
>gnl|CDD|219836 pfam08429, PLU-1, PLU-1-like protein Back     alignment and domain information
>gnl|CDD|219836 pfam08429, PLU-1, PLU-1-like protein Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information
>gnl|CDD|219836 pfam08429, PLU-1, PLU-1-like protein Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information
>gnl|CDD|227367 COG5034, TNG2, Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1383
PF08429335 PLU-1: PLU-1-like protein; InterPro: IPR013637 Thi 100.0
PF08429335 PLU-1: PLU-1-like protein; InterPro: IPR013637 Thi 100.0
KOG1246904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 99.97
KOG0958690 consensus DNA damage-responsive repressor GIS1/RPH 99.84
PF0292854 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Z 99.53
PF02373114 JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 99.39
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 99.08
KOG1973274 consensus Chromatin remodeling protein, contains P 99.0
KOG4323 464 consensus Polycomb-like PHD Zn-finger protein [Gen 98.62
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.51
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.25
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.25
KOG1632345 consensus Uncharacterized PHD Zn-finger protein [G 97.98
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 97.97
KOG1512381 consensus PHD Zn-finger protein [General function 97.69
KOG1973274 consensus Chromatin remodeling protein, contains P 97.65
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 96.85
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 96.53
KOG1632 345 consensus Uncharacterized PHD Zn-finger protein [G 96.14
KOG2752345 consensus Uncharacterized conserved protein, conta 96.08
KOG4299 613 consensus PHD Zn-finger protein [General function 95.96
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 95.79
KOG1512381 consensus PHD Zn-finger protein [General function 95.7
KOG0825 1134 consensus PHD Zn-finger protein [General function 95.53
KOG1244336 consensus Predicted transcription factor Requiem/N 95.48
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 95.0
KOG1844 508 consensus PHD Zn-finger proteins [General function 94.83
KOG0825 1134 consensus PHD Zn-finger protein [General function 94.5
KOG0957707 consensus PHD finger protein [General function pre 94.48
KOG4299613 consensus PHD Zn-finger protein [General function 94.34
KOG0954 893 consensus PHD finger protein [General function pre 94.24
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 94.13
KOG0954 893 consensus PHD finger protein [General function pre 93.75
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 92.18
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 91.64
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 91.44
KOG0957 707 consensus PHD finger protein [General function pre 90.86
KOG1244336 consensus Predicted transcription factor Requiem/N 89.66
KOG12451404 consensus Chromatin remodeling complex WSTF-ISWI, 87.76
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 87.19
KOG0383 696 consensus Predicted helicase [General function pre 87.19
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 87.09
KOG1245 1404 consensus Chromatin remodeling complex WSTF-ISWI, 86.26
COG5141669 PHD zinc finger-containing protein [General functi 83.43
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 82.53
KOG0956 900 consensus PHD finger protein AF10 [General functio 81.66
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes [] Back     alignment and domain information 
Probab=100.00  E-value=5.2e-40  Score=386.43  Aligned_cols=317  Identities=24%  Similarity=0.383  Sum_probs=289.8

Q ss_pred             HHHHHhHHHhhc--cCCChhHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhccccCCCC-----C
Q 000627          261 EQWLSCSLKVLQ--GLFSSDAYGTLLREAEQFLWAGFEMDAVRDMVNKLIEGRRWAEGIRDCLHKAENWSSLPG-----S  333 (1383)
Q Consensus       261 e~W~~k~~~iL~--~~~~l~~l~~LL~EaE~~~~~~~~~~~lr~l~~~l~ea~~W~e~a~~c~s~~q~~~~~~~-----~  333 (1383)
                      +.|.++|+++|.  ..++++.|++||+|||+++||.+  ++|+.|+..|.+|+.|++.|+.+++++++.+++..     +
T Consensus         1 d~W~~k~~~~l~~~~k~~L~~l~~Ll~e~e~~~~~~~--~l~~~L~~~v~~a~~~~~~a~~~l~~k~~~r~~~~~~~~~~   78 (335)
T PF08429_consen    1 DTWAEKVKEALEESPKPSLKELRSLLSEGEKIPFPLP--ELLENLRNFVKRAESWVEKAQQLLSRKQRTRRRNGKAEDQK   78 (335)
T ss_pred             ChhHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCcccccc
Confidence            479999999994  45689999999999999999997  55677777899999999999999999998766542     3


Q ss_pred             CCccccHHHHhhhhc-CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHhhcCCCccccchHHHH
Q 000627          334 DSEKVRLDCVNELLG-FDPLPCNEPGHLILQNYAEEARSLIQEINAALSA--CSKISELELLYSRASGLPICIVESEKLS  410 (1383)
Q Consensus       334 ~~~kl~l~eL~~ll~-~~~lpc~~pe~~~Lkel~~~~e~~~~e~~~~L~~--~~~~~eLe~Ll~~g~~f~V~lpEl~kLk  410 (1383)
                      +..++++++|+.|++ +.+|||++||+.+|+++++.+++|+.+|+.+|+.  ..++++++.||++|++|+|++||+..|+
T Consensus        79 ~~~~~~l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~  158 (335)
T PF08429_consen   79 SRNKLTLEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLR  158 (335)
T ss_pred             ccccCCHHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHH
Confidence            578899999999999 9999999999999999999999999999999986  4679999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHhhccCCCcccHHHHHHHHHHhhhcCCCCCch----hHHHHHHHHHHHHHHHHHHHhc-CCCCHH
Q 000627          411 QRISSAKVWRDSVRKCISNKCPAAIEIDVLYKLESEALDLKIDVPET----DMLLKMIGQAESCRARCSEALR-GSMSLK  485 (1383)
Q Consensus       411 ~rl~~~~~W~~~v~~~L~~~~~~~~tLeeLr~Ll~ea~~l~v~~Pe~----d~L~ell~~aE~we~kA~~lL~-~~~tl~  485 (1383)
                      +++++.+ |+++++.++..  +..++|++++.|+++|..+++  |..    ..|+++++.|+.|+++|+.+|. ..++++
T Consensus       159 ~~l~~~~-W~~~~~~~~~~--~~~~tL~~l~~Ll~~g~~l~~--~~~~~~~~~L~~~l~~~~~We~ka~~~L~~~~~~l~  233 (335)
T PF08429_consen  159 RRLEQLE-WLEEAREILSD--PDRLTLDELRELLDEGERLGI--PSDEKLMAELQELLKQGEEWEEKAKELLSRPRVSLE  233 (335)
T ss_pred             HHHHHHH-HHHHHHHHhcc--ccCCcHHHHHHHHHhhhcCCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence            9999998 99999999754  225899999999999999974  444    4778889999999999999999 579999


Q ss_pred             HHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHhhccCCcCCCChhhHHHHH
Q 000627          486 TVELLLQELGDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDLPLVEVEL  565 (1383)
Q Consensus       486 eLe~ll~e~~~lpv~lpel~~Lk~~L~ka~~W~~~a~~ll~~~~~~~~~~p~l~eL~~Ll~~g~~L~V~lpel~~LE~~l  565 (1383)
                      +|++|++++.+|||++|.+..|++++.+|++|+++++.++..   .++.+|+++++++|+.+|..|+|.++++++||..+
T Consensus       234 ~Le~l~~~~~~ipv~~~~~~~L~~~l~kak~w~~~i~~ll~~---~~~~~p~~~el~~l~~~~~~L~~~~~~~~~Le~~~  310 (335)
T PF08429_consen  234 QLEALLEEAENIPVSLPSLDKLKDALQKAKEWLRQIEELLEQ---NGSKRPTLDELEELVAESEELPVKLEELSDLEKQL  310 (335)
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence            999999999999999999999999999999999999999852   24789999999999999999999999999999999


Q ss_pred             HHhH-HHHHHHhhhcCCCCHHHH
Q 000627          566 KKAH-CREKALKACDTKMPLDFI  587 (1383)
Q Consensus       566 ~~a~-Wl~~a~k~f~k~~sL~~L  587 (1383)
                      .+++ |+++++++|+++|+.+.|
T Consensus       311 ~~~~~W~~~~~k~F~k~ns~~~l  333 (335)
T PF08429_consen  311 KRAEDWMEKAKKLFLKKNSPLHL  333 (335)
T ss_pred             HHHHHHHHHHHHHhcccCchhhh
Confidence            9999 999999999999986654

The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes [] Back     alignment and domain information
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1383
2w2i_A358 Crystal Structure Of The Human 2-Oxoglutarate Oxyge 3e-16
4hoo_A330 Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme L 2e-15
4hon_A330 Crystal Structure Of Human Jmjd2d/kdm4d In Complex 2e-15
3dxu_A337 The Crystal Structure Of Core Jmjd2d Complexed With 2e-15
3dxt_A354 Crystal Structure Of The Catalytic Core Domain Of J 2e-15
2xml_A348 Crystal Structure Of Human Jmjd2c Catalytic Domain 5e-14
3opt_A373 Crystal Structure Of The Rph1 Catalytic Core With A 6e-13
2wwj_A348 Structure Of Jmjd2a Complexed With Inhibitor 10a Le 7e-13
2oq6_A381 Crystal Structure Of Jmjd2a Complexed With Histone 7e-13
2gp3_A349 Crystal Structure Of The Catalytic Core Domain Of J 8e-13
2p5b_A352 The Complex Structure Of Jmjd2a And Trimethylated H 9e-13
2pxj_A347 The Complex Structure Of Jmjd2a And Monomethylated 9e-13
1wem_A76 Solution Structure Of Phd Domain In Death Inducer- 7e-07
2fui_A62 Nmr Solution Structure Of Phd Finger Fragment Of Hu 2e-05
2f6j_A174 Crystal Structure Of Phd Finger-Linker-Bromodomain 4e-05
3qzv_A174 Crystal Structure Of Bptf Phd-Linker-Bromo In Compl 4e-05
3o70_A68 Phd-Type Zinc Finger Of Human Phd Finger Protein 13 1e-04
2lv9_A98 Solution Nmr Structure Of The Phd Domain Of Human M 2e-04
2ri7_A174 Crystal Structure Of Phd Finger-Linker-Bromodomain 5e-04
2k16_A75 Solution Structure Of The Free Taf3 Phd Domain Leng 5e-04
3o7a_A52 Crystal Structure Of Phf13 In Complex With H3k4me3 7e-04
3kqi_A75 Crystal Structure Of Phf2 Phd Domain Complexed With 7e-04
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase Loc390245 Length = 358 Back     alignment and structure 
Iteration: 1

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 48/77 (62%)
Query: 2   RSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGL 61
           R   PD+       L   V +++P+VL ENG+P   + QE G F++TFP  YHAGFN G 
Sbjct: 247 RELFPDISRGCEAFLRHKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFNHGF 306
Query: 62  NCAEAVNFAPADWLPHG 78
           NCAEA+NFA   W+ +G
Sbjct: 307 NCAEAINFATPRWIDYG 323
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme Length = 330 Back     alignment and structure
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An H3k9me3 Peptide And 2-oxoglutarate Length = 330 Back     alignment and structure
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And N- Oxalylglycine Length = 337 Back     alignment and structure
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d Length = 354 Back     alignment and structure
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain Length = 348 Back     alignment and structure
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With A-Ketoglutarate Length = 373 Back     alignment and structure
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a Length = 348 Back     alignment and structure
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3 Peptide Trimethylated At Lys9 Length = 381 Back     alignment and structure
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a Length = 349 Back     alignment and structure
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36 Peptide Length = 352 Back     alignment and structure
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36 Peptide Length = 347 Back     alignment and structure
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer- Obliterator 1(Dio-1) Length = 76 Back     alignment and structure
>pdb|2FUI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Human Bptf In Free State Length = 62 Back     alignment and structure
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State Length = 174 Back     alignment and structure
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With Histone H4k12ac Peptide Length = 174 Back     alignment and structure
>pdb|3O70|A Chain A, Phd-Type Zinc Finger Of Human Phd Finger Protein 13 Length = 68 Back     alignment and structure
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5, Northeast Structural Genomics Consortium Target Hr6512a Length = 98 Back     alignment and structure
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e Mutant From Human Bptf In The H3(1-9)k4me2 Bound State Length = 174 Back     alignment and structure
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain Length = 75 Back     alignment and structure
>pdb|3O7A|A Chain A, Crystal Structure Of Phf13 In Complex With H3k4me3 Length = 52 Back     alignment and structure
>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With H3k4me3 Peptide Length = 75 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1383
4ask_A510 Lysine-specific demethylase 6B; oxidoreductase, KD 8e-43
3avr_A531 Lysine-specific demethylase 6A; cupin superfamily, 2e-41
3dxt_A354 JMJC domain-containing histone demethylation PROT; 7e-30
2ox0_A381 JMJC domain-containing histone demethylation PROT; 4e-27
3opt_A373 DNA damage-responsive transcriptional repressor R; 1e-22
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 9e-22
3o70_A68 PHD finger protein 13; PHF13, structural genomics 6e-18
1wem_A76 Death associated transcription factor 1; structura 7e-16
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-14
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 1e-13
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 6e-05
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 4e-13
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 3e-05
1wee_A72 PHD finger family protein; structural genomics, PH 9e-13
1wee_A72 PHD finger family protein; structural genomics, PH 6e-04
1we9_A64 PHD finger family protein; structural genomics, PH 7e-12
1we9_A64 PHD finger family protein; structural genomics, PH 7e-05
2k16_A75 Transcription initiation factor TFIID subunit 3; p 1e-11
2k16_A75 Transcription initiation factor TFIID subunit 3; p 2e-06
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 4e-10
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 4e-10
1weu_A91 Inhibitor of growth family, member 4; structural g 6e-10
3kv5_D 488 JMJC domain-containing histone demethylation prote 9e-10
1wew_A78 DNA-binding family protein; structural genomics, P 1e-09
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 6e-09
1x4i_A70 Inhibitor of growth protein 3; structural genomics 1e-08
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 2e-08
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 2e-08
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 2e-08
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 3e-07
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 4e-07
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 8e-07
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 7e-06
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 3e-06
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 2e-05
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 3e-04
3rsn_A177 SET1/ASH2 histone methyltransferase complex subun; 3e-04
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 5e-04
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 9e-04
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 6e-04
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 6e-04
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 7e-04
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 8e-04
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510 Back     alignment and structure
 Score =  163 bits (414), Expect = 8e-43
 Identities = 34/222 (15%), Positives = 65/222 (29%), Gaps = 16/222 (7%)

Query: 2   RSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGL 61
             ++    D                 L  + +PVY  +Q PG+ V     + H     G 
Sbjct: 279 WETISAFCDRHGVDYLTGSWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGW 338

Query: 62  NCAEAVNFAPADW--LPHGGFGADLYQQYHKAAVLSHEELLCVVAKS--DLDSKVSPYLK 117
               A N  P             +  +  +  +++    +   VA++    D  +   +K
Sbjct: 339 CNNIAWNVGPLTAYQYQLALERYEWNEVKNVKSIVPMIHVSWNVARTVKISDPDLFKMIK 398

Query: 118 RELLRVYTKERMWRERLWRKGIIKSTPMGPRKCPEYVGTEEDPTCIICRQ----YLYLSA 173
             LL+     ++ RE L R G               V  E    C  C       L++++
Sbjct: 399 FCLLQSMKHCQVQRESLVRAGK-------KIAYQGRVKDEPAYYCNECDVEVFNILFVTS 451

Query: 174 VACRCRPAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLF 215
                      C            + + +L ++   EL   +
Sbjct: 452 ENGSRNTYLVHCEGCARRRSAGL-QGVVVLEQYRTEELAQAY 492
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531 Back     alignment and structure
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 2w2i_A* Length = 354 Back     alignment and structure
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Length = 381 Back     alignment and structure
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Length = 373 Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Length = 79 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 72 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 78 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Length = 68 Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Length = 528 Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Length = 90 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Length = 52 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 Back     alignment and structure
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A Length = 177 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1383
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 4e-13
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 0.003
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 3e-11
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 2e-06
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 7e-11
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 2e-05
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 5e-10
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 9e-09
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 6e-08
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 7e-07
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 1e-06
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 7e-06
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 4e-04
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 5e-04
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 0.003
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 0.004
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.9 bits (155), Expect = 4e-13
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 8/59 (13%)

Query: 1243 LYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSA--------PEIYICAACKPQAEESS 1293
            LYCICR+P++ + MI C +C+EW+H DCV +  A         E YIC  C   +  SS
Sbjct: 17   LYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPSS 75
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1383
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 99.06
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 98.78
d1wema_76 Death associated transcription factor 1, Datf1 (DI 98.77
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.7
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 98.69
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 98.56
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 98.43
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.26
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.2
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 98.06
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.03
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 98.0
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 97.87
d1wema_76 Death associated transcription factor 1, Datf1 (DI 97.84
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 97.8
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 97.76
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 97.7
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 97.68
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 97.66
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 97.6
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 97.57
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 97.49
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=3.2e-11  Score=93.90  Aligned_cols=51  Identities=35%  Similarity=0.960  Sum_probs=43.4

Q ss_pred             CCCEEEEECCCCC-CCCEEEECCCCCEEECCCCCCCCC----CCCEECCCCCCCCC
Q ss_conf             9823888355889-988166147997135224677789----99157188878877
Q 000627         1240 RSMLYCICRKPYD-EKAMIACYQCDEWYHIDCVKLLSA----PEIYICAACKPQAE 1290 (1383)
Q Consensus      1240 ~~~~yC~C~~p~~-~~~Mi~Cd~C~~W~H~~Cvg~~~~----~~~~~C~~C~~~~~ 1290 (1383)
                      ..++||+|+++++ +++|||||.|+.|||..|+|+...    .+.|+|+.|.....
T Consensus        10 ~~pv~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~g   65 (79)
T d1wepa_          10 LVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG   65 (79)
T ss_dssp             CCCCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred             CCCEEEECCCCCCCCCCEEECCCCCCCEECCCCCCCHHCCCCCCEEECCCCCCCCC
T ss_conf             58868489896599986888998997396034174510278787789956738768
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure