Citrus Sinensis ID: 000640
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1378 | ||||||
| 255536725 | 1732 | homeobox protein, putative [Ricinus comm | 0.984 | 0.782 | 0.657 | 0.0 | |
| 359483496 | 1729 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.790 | 0.624 | 0.0 | |
| 224125578 | 1423 | predicted protein [Populus trichocarpa] | 0.797 | 0.772 | 0.699 | 0.0 | |
| 297740429 | 1682 | unnamed protein product [Vitis vinifera] | 0.967 | 0.792 | 0.613 | 0.0 | |
| 224077058 | 1440 | predicted protein [Populus trichocarpa] | 0.806 | 0.771 | 0.709 | 0.0 | |
| 449479573 | 1750 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.771 | 0.587 | 0.0 | |
| 449433800 | 1675 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.805 | 0.587 | 0.0 | |
| 356546621 | 1755 | PREDICTED: uncharacterized protein LOC10 | 0.986 | 0.774 | 0.609 | 0.0 | |
| 124360728 | 1795 | DDT; Homeodomain-related [Medicago trunc | 0.958 | 0.735 | 0.599 | 0.0 | |
| 357446737 | 1796 | Homeobox protein Hox-C4 [Medicago trunca | 0.958 | 0.735 | 0.598 | 0.0 |
| >gi|255536725|ref|XP_002509429.1| homeobox protein, putative [Ricinus communis] gi|223549328|gb|EEF50816.1| homeobox protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1713 bits (4436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 921/1400 (65%), Positives = 1091/1400 (77%), Gaps = 44/1400 (3%)
Query: 1 MEKKRKCDEARIAREVEANEIRIQKELERQDNLRRKNEERMRKEMEKHERERRKEEERLM 60
MEKKRK DEAR R+ EANE RI+KELE++D LRRKNEER++K+ME+ +RERRKEEERLM
Sbjct: 355 MEKKRKIDEARTVRDPEANEYRIRKELEKKDQLRRKNEERIKKDMERQDRERRKEEERLM 414
Query: 61 RERQREEERSLREQKREMERREKFLQKEYLRAEKRRLKEELRMEKQAAKRKVAIEKATAR 120
RERQREEERSLREQKRE+ERREKFLQKEYLRAEK R KEELR EK+A KR+ AIEKATAR
Sbjct: 415 RERQREEERSLREQKRELERREKFLQKEYLRAEKMRQKEELRKEKEAVKRQAAIEKATAR 474
Query: 121 KMAKESMDLIEDEQLELMDLAAASKGLSSIIHLDLETLQNLDSFRDSLSVFPPKTVRLKR 180
++AKES+DLIEDEQLELM++A ASKGL+SI+HL+ + LQ+L+SFRDSLS+FPP++V+L +
Sbjct: 475 RIAKESLDLIEDEQLELMEIAVASKGLASIVHLNYDALQSLESFRDSLSMFPPQSVQLTK 534
Query: 181 PFSVQPWSDSEENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFHDHESRLLGEIHLAL 240
PF++QPW DSEEN+GNLLMVWRFFITFADV+GLWPFTLDEFVQAFHD++SRLLGE+H++L
Sbjct: 535 PFAIQPWMDSEENIGNLLMVWRFFITFADVIGLWPFTLDEFVQAFHDYDSRLLGEVHVSL 594
Query: 241 LKSIIKDIEDVARTPSTGLGMNQYCAANPEGGHPRIIEGAYAWGFDIRNWQQLLNPLTWH 300
L+ IIKDIEDVARTPS GLG NQY ANPEGGHP+I+EGAY WGFDIRNWQ+ LNP+TW
Sbjct: 595 LRLIIKDIEDVARTPSIGLGTNQYSPANPEGGHPQIVEGAYMWGFDIRNWQRHLNPVTWP 654
Query: 301 EIFRQLALSAGFGPKLKKRSSKWANVGDNHEGKGCEDIVSTIRNGSAAENAFAWMREKGL 360
EIFRQLALSAGFGP+LKK+ + W +GDN E KGCED +ST+RNGSAAENAFA MRE+GL
Sbjct: 655 EIFRQLALSAGFGPRLKKKGTAWTYLGDNDEVKGCEDTISTLRNGSAAENAFALMRERGL 714
Query: 361 LLPRRSRHKLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISV 420
LLPRRSRH+LTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISV
Sbjct: 715 LLPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISV 774
Query: 421 ALTRDTKLFERIAPSTYCVRPAFRKDPADAEAILAAARKKIRIFENGFLGGEDADDVERD 480
ALTRD KLFERIAPSTYC+R A+RKDPADAEAIL+AARKKIRIFENGFLGG+DADDVERD
Sbjct: 775 ALTRDQKLFERIAPSTYCLRAAYRKDPADAEAILSAARKKIRIFENGFLGGDDADDVERD 834
Query: 481 EDSECDVEEDPEVEDLATPSSANKNIDRYDEANTCLVSGKDNACNDVALSVQNEVDKGFS 540
E+SE DVEEDPEV+DLATP +ANK+ +EANTC SGKDN C+ V LS++NE+ K S
Sbjct: 835 EESEGDVEEDPEVDDLATPLTANKSAVHSNEANTCSGSGKDNVCSGVPLSIKNELVKEPS 894
Query: 541 SFSLNDSKDARCQGTADNYVAVEDFGASHLNQENIEIDESKPGESWIQGLAEGDYSHLSV 600
S N KDA+ +D A+++++ENIEIDESK GESWIQGLAE +Y+HLSV
Sbjct: 895 SVPSNGLKDAKTPSI--EQCVAQDVVAANIDEENIEIDESKSGESWIQGLAEAEYAHLSV 952
Query: 601 EERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQMWAEAQLDKSRLKEENITKLDFT 660
EERLNALVAL+GIANEGN+IR+VLEDRLEAANALKKQMWAEAQLD+SRLKE+ ++KLDF+
Sbjct: 953 EERLNALVALVGIANEGNTIRSVLEDRLEAANALKKQMWAEAQLDRSRLKEDIMSKLDFS 1012
Query: 661 PAMGSKAETHLASSAAEGGQSPLPVFVDNKN-EASPSLAEDQKPMFGSQVFQNHLSEFPN 719
++G +AE +ASSA EG QSPL + VD+K+ EASPS EDQK + S+ P
Sbjct: 1013 SSIGVRAELQVASSAVEGSQSPL-LLVDSKSKEASPSTGEDQKSLLASE-------SVPT 1064
Query: 720 ERTVAVQDPSTGLDNLATQQHGYASKRSRSQLKAYIAHMAEEMYVYRSLPLGQDRRRNRY 779
E+ + VQDPS+ DN ++QQHGY SKRSRSQLKAYI H+AEE YVYRSLPLGQDRRRNRY
Sbjct: 1065 EKQLVVQDPSSNPDNFSSQQHGYGSKRSRSQLKAYIGHIAEETYVYRSLPLGQDRRRNRY 1124
Query: 780 WQFATSASRNDPCSGRIFVELHDGTWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIE 839
WQF SAS+NDPCSG IFVELHDG WRLID+ EAFDALLSSLD RG RESHLRIMLQK+E
Sbjct: 1125 WQFVASASKNDPCSGWIFVELHDGNWRLIDSEEAFDALLSSLDTRGVRESHLRIMLQKVE 1184
Query: 840 TSFKDKVRRNLQGIDTVGQSWTAIKNEAAEMDVDPDF-ASSDSPSSTVCGLNSDTLETSS 898
SFKD +RRNL S + EA E D A SP+S VCG N DT TSS
Sbjct: 1185 KSFKDNIRRNL-------HSRATAETEACEADSSSICSAGYGSPTSMVCGSNLDTSNTSS 1237
Query: 899 SFRIELGRNEIEKKAALERFQDFQWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDS 958
FRIELGRNE+EKK AL+R+QDFQ WMW+ECFNSL+LCA K K RC QLL C+ C DS
Sbjct: 1238 LFRIELGRNEMEKKGALKRYQDFQKWMWKECFNSLTLCAMKYGKKRCIQLLATCEWCFDS 1297
Query: 959 YLCEDAHCPSCHRTFGAVDKSSKFSEHSIQCEEKTKLGLRDIHVSDSSLPLGIRLLKPLS 1018
YL ED HC SCH+TF +KS EH +QC++KTKL D V DSSLP GIR LK L
Sbjct: 1298 YLAEDTHCLSCHQTFSTANKSFNIFEHEVQCKDKTKL---DHGVCDSSLPPGIRSLKALL 1354
Query: 1019 AVIEAYIPPEALEASWTDERRKTWGMKLNMSSSAEEVLQLLTILESGIKRSYLSSNFETT 1078
++IE +P EALE+ WT+ RKTW MKLN SSS EE+LQ+LT+LES IKR LS+NFE T
Sbjct: 1355 SLIEVSVPAEALESFWTENHRKTWAMKLNKSSSTEELLQMLTVLESAIKRDCLSANFEMT 1414
Query: 1079 KELLGSSFTC-------ADPWSVPILPWIPKTTAAVALRLLELDASIMYVKPEKPEQFEE 1131
KE G S AD SVP+LPWIPKTTAAVALRL +LDASI Y++ EK E E+
Sbjct: 1415 KEFSGGSILSHSALHSRADLRSVPVLPWIPKTTAAVALRLFDLDASIAYIQREKAEPSED 1474
Query: 1132 DKEANERVIPSRYLPLKNKEVVLKELDQDRLVKEENYSNLAGKRKNYRR-GKGNRDHGWS 1190
+PSRY PLKNKEV LKEL Q+ VKE+ ++++ KR + +R G+G D G+
Sbjct: 1475 KPIKLFMKLPSRYSPLKNKEVELKELKQEH-VKEDRFTDVRNKRNSCKRGGRGGSDQGYG 1533
Query: 1191 RKYHKKTPSITADVGRRTAREHEGLNLRLKQQGLRTNGR-----GRRTVRKRADRTSKNE 1245
K K+ P I ++ RR A E LN+ +QQG RT + R ++RA+ E
Sbjct: 1534 TKSRKRVPGIKSNANRRNAGEIGKLNMGPRQQGRRTTAQLSGRGRRTVRKRRAEVMVAEE 1593
Query: 1246 TFQGQMGHMVIPDSSSGLHRNLDEEEWGVGKERMINMEDAENSNSAEAVDSDDNVQAVEY 1305
T ++ V+P S G R+L EE+WG K M +++DA+NSNS EA +SDDNV+A E+
Sbjct: 1594 TLINRLSDTVVPRSYGGSLRSLAEEDWGDEKIGM-DVDDADNSNSVEAAESDDNVEAEEF 1652
Query: 1306 EQGNWEVGFNGATNGWNRDVMEVSDEDEDAFGDDAGIEEAVDEYSEGNIDMSEAS----D 1361
EQGNWE F+ NGWNR+ +E+SD+D DA GDD IE+A E SE +ID SE S +
Sbjct: 1653 EQGNWEQSFSRGFNGWNRNSIEMSDDDGDASGDDNVIEDAGVEDSEEDIDTSEGSGRVPN 1712
Query: 1362 QNGI--DDGVDSAAS-EYSD 1378
N + D+G DS AS +YS+
Sbjct: 1713 NNKMENDEGTDSEASDDYSE 1732
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483496|ref|XP_002273559.2| PREDICTED: uncharacterized protein LOC100247033 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224125578|ref|XP_002329839.1| predicted protein [Populus trichocarpa] gi|222870901|gb|EEF08032.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297740429|emb|CBI30611.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224077058|ref|XP_002305113.1| predicted protein [Populus trichocarpa] gi|222848077|gb|EEE85624.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449479573|ref|XP_004155639.1| PREDICTED: uncharacterized protein LOC101230914 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449433800|ref|XP_004134685.1| PREDICTED: uncharacterized protein LOC101220962 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356546621|ref|XP_003541723.1| PREDICTED: uncharacterized protein LOC100777465 [Glycine max] | Back alignment and taxonomy information |
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| >gi|124360728|gb|ABN08705.1| DDT; Homeodomain-related [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|357446737|ref|XP_003593644.1| Homeobox protein Hox-C4 [Medicago truncatula] gi|355482692|gb|AES63895.1| Homeobox protein Hox-C4 [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1378 | ||||||
| TAIR|locus:2032505 | 1705 | HB-1 "homeobox-1" [Arabidopsis | 0.423 | 0.341 | 0.626 | 3.7e-244 | |
| TAIR|locus:2167628 | 1694 | RLT2 "RINGLET 2" [Arabidopsis | 0.409 | 0.332 | 0.547 | 1e-220 | |
| TAIR|locus:2159537 | 723 | AT5G08630 "AT5G08630" [Arabido | 0.169 | 0.322 | 0.259 | 3.4e-12 | |
| DICTYBASE|DDB_G0282237 | 885 | DDB_G0282237 "DDT domain-conta | 0.059 | 0.092 | 0.349 | 5.8e-10 | |
| UNIPROTKB|Q9UIG0 | 1483 | BAZ1B "Tyrosine-protein kinase | 0.145 | 0.134 | 0.221 | 0.0002 | |
| MGI|MGI:1353499 | 1479 | Baz1b "bromodomain adjacent to | 0.145 | 0.135 | 0.230 | 0.00034 | |
| UNIPROTKB|G3V661 | 1476 | Baz1b "Bromodomain adjacent to | 0.146 | 0.136 | 0.237 | 0.00051 | |
| UNIPROTKB|J9P3J2 | 1392 | BAZ1B "Uncharacterized protein | 0.145 | 0.143 | 0.230 | 0.00057 | |
| UNIPROTKB|E2RED7 | 1482 | BAZ1B "Uncharacterized protein | 0.145 | 0.134 | 0.230 | 0.00065 | |
| UNIPROTKB|J9PAU7 | 1485 | BAZ1B "Uncharacterized protein | 0.145 | 0.134 | 0.230 | 0.00065 |
| TAIR|locus:2032505 HB-1 "homeobox-1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1816 (644.3 bits), Expect = 3.7e-244, Sum P(3) = 3.7e-244
Identities = 375/599 (62%), Positives = 441/599 (73%)
Query: 107 AAKRKVAIEKATARKMAKESMDLIEDEQLELMDLAAASKGLSSIIHLDLETLQNLDSFRD 166
A +RK+AIEKATAR++AKESMDLIEDEQLELM+LAA SKGL S++ LD +TLQNL+ +RD
Sbjct: 465 AIRRKLAIEKATARRIAKESMDLIEDEQLELMELAAISKGLPSVLQLDHDTLQNLEVYRD 524
Query: 167 SLSVFPPKTVRLKRPFSVQPWSDSEENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFH 226
SLS FPPK+++LK PF++ PW DS+E VGNLLMVWRF I+F+DVL LWPFTLDEF+QAFH
Sbjct: 525 SLSTFPPKSLQLKMPFAISPWKDSDETVGNLLMVWRFLISFSDVLDLWPFTLDEFIQAFH 584
Query: 227 DHESRLLGEIHLALLKSIIKDIEDVARTPSTGLGMNQYCAANPEGGHPRIIEGAYAWGFD 286
D++SRLLGEIH+ LL+SII+D+EDVARTP +G+G NQY ANPEGGHP+I+EGAYAWGFD
Sbjct: 585 DYDSRLLGEIHVTLLRSIIRDVEDVARTPFSGIGNNQYTTANPEGGHPQIVEGAYAWGFD 644
Query: 287 IRNWQQLLNPLTWHEIFRQLALSAGFGPKLKKRSSKWANVGDNHEGKGCEDIVSTIRNGS 346
IR+W++ LNPLTW EI RQLALSAGFGPKLKK+ S+ N GD E KGCED++STIRNG+
Sbjct: 645 IRSWKKHLNPLTWPEILRQLALSAGFGPKLKKKHSRLTNTGDKDEAKGCEDVISTIRNGT 704
Query: 347 AAENAFAWMREKGLLLPRRSRHKLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLR 406
AAE+AFA MREKGLL PR+SRH+LTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLR
Sbjct: 705 AAESAFASMREKGLLAPRKSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLR 764
Query: 407 DLTTSKTPEASISVALTRDTKLFERIAPSTYCVRPAFRKDPXXXXXXXXXXRKKIRIFEN 466
DLTTSKTPEASISVALTRD KLFERIAPSTYCVR + KDP RKKIR FEN
Sbjct: 765 DLTTSKTPEASISVALTRDVKLFERIAPSTYCVRAPYVKDPKDGEAILADARKKIRAFEN 824
Query: 467 GFLGGEDAXXXXXXXXXXXXXXXXXXXXXLATPSSANKNIDRYDEANTCLVSGKDNACND 526
GF G ED LAT +SA+K+ EAN G D D
Sbjct: 825 GFTGPEDVNDLERDEDFEIDIDEDPEVDDLATLASASKSAV-LGEANVLSGKGVDTMFCD 883
Query: 527 VALSVQNEVDKGFSSFSLNDSKDARCQGTADNYVAVEDFGASHLNQENIEIDESKPGESW 586
V V++E++K FSS + K Q + + V G + IDES G+SW
Sbjct: 884 VKADVKSELEKEFSSPPPSTMKSIVPQHSERHKNTVVG-GVDAV------IDESNQGQSW 936
Query: 587 IQGLAEGDYSHLSVEERLNALVALIGIANEGNSIRAVLEDRLEAANALKKQMWAEAQLDK 646
IQGL EGDY HLSVEERLNALVAL+GIANEGNSIR LEDR+EAANALKKQMWAEAQLD
Sbjct: 937 IQGLTEGDYCHLSVEERLNALVALVGIANEGNSIRTGLEDRMEAANALKKQMWAEAQLDN 996
Query: 647 SRLKEENITKLDFTPAMGSKAETHLASSAAEGGQSPLPVFVDNKNEASPS-LAEDQKPM 704
S +++ + KLD SK E+ + + F + PS L ++ KP+
Sbjct: 997 SCMRD--VLKLDLQNLASSKTESTIGLPIIQSSTRERDSF-----DRDPSQLLDETKPL 1048
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| TAIR|locus:2167628 RLT2 "RINGLET 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2159537 AT5G08630 "AT5G08630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0282237 DDB_G0282237 "DDT domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9UIG0 BAZ1B "Tyrosine-protein kinase BAZ1B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:1353499 Baz1b "bromodomain adjacent to zinc finger domain, 1B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G3V661 Baz1b "Bromodomain adjacent to zinc finger domain protein 1B" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9P3J2 BAZ1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RED7 BAZ1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9PAU7 BAZ1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.124.214.1 | hypothetical protein (1423 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1378 | |||
| pfam02791 | 61 | pfam02791, DDT, DDT domain | 4e-23 | |
| smart00571 | 63 | smart00571, DDT, domain in different transcription | 2e-16 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-10 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 9e-08 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 5e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 7e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 9e-07 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 2e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-05 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 1e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-05 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 2e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-05 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 3e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-05 | |
| pfam02841 | 297 | pfam02841, GBP_C, Guanylate-binding protein, C-ter | 3e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-05 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 7e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 9e-05 | |
| COG3064 | 387 | COG3064, TolA, Membrane protein involved in colici | 9e-05 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 1e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-04 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 1e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-04 | |
| TIGR00570 | 309 | TIGR00570, cdk7, CDK-activating kinase assembly fa | 2e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-04 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 4e-04 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 4e-04 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 4e-04 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 4e-04 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 6e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 6e-04 | |
| pfam13868 | 349 | pfam13868, Trichoplein, Tumour suppressor, Mitosta | 7e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 8e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 9e-04 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 9e-04 | |
| pfam07946 | 322 | pfam07946, DUF1682, Protein of unknown function (D | 9e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.001 | |
| pfam02841 | 297 | pfam02841, GBP_C, Guanylate-binding protein, C-ter | 0.001 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.001 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.001 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 0.001 | |
| pfam12072 | 201 | pfam12072, DUF3552, Domain of unknown function (DU | 0.001 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 0.001 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.002 | |
| pfam12037 | 276 | pfam12037, DUF3523, Domain of unknown function (DU | 0.002 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.002 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 0.002 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 0.002 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.002 | |
| COG0711 | 161 | COG0711, AtpF, F0F1-type ATP synthase, subunit b [ | 0.002 | |
| pfam13904 | 261 | pfam13904, DUF4207, Domain of unknown function (DU | 0.002 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 0.002 | |
| pfam05262 | 489 | pfam05262, Borrelia_P83, Borrelia P83/100 protein | 0.002 | |
| PRK05035 | 695 | PRK05035, PRK05035, electron transport complex pro | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.003 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.003 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.003 | |
| pfam09756 | 189 | pfam09756, DDRGK, DDRGK domain | 0.003 | |
| pfam06658 | 142 | pfam06658, DUF1168, Protein of unknown function (D | 0.003 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.003 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 0.003 | |
| pfam12474 | 142 | pfam12474, PKK, Polo kinase kinase | 0.003 | |
| pfam12474 | 142 | pfam12474, PKK, Polo kinase kinase | 0.003 | |
| COG1842 | 225 | COG1842, PspA, Phage shock protein A (IM30), suppr | 0.004 | |
| PRK09510 | 387 | PRK09510, tolA, cell envelope integrity inner memb | 0.004 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 0.004 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 0.004 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.004 |
| >gnl|CDD|202398 pfam02791, DDT, DDT domain | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 4e-23
Identities = 34/61 (55%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 191 EENVGNLLMVWRFFITFADVLGLWPFTLDEFVQAFHDHESR-LLGEIHLALLKSIIKDIE 249
E G+LLMVW F TF +VLGL PFTLD+F +A +S LLGE+H+ALLK ++ D E
Sbjct: 1 GEAFGDLLMVWEFLNTFGEVLGLSPFTLDDFEEALLCTDSEELLGEVHIALLKLLVADEE 60
Query: 250 D 250
D
Sbjct: 61 D 61
|
This domain is approximately 60 residues in length, and is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is exclusively associated with nuclear domains, and is thought to be arranged into three alpha helices. Length = 61 |
| >gnl|CDD|214726 smart00571, DDT, domain in different transcription and chromosome remodeling factors | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682) | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
| >gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552) | Back alignment and domain information |
|---|
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523) | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein | Back alignment and domain information |
|---|
| >gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain | Back alignment and domain information |
|---|
| >gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168) | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase | Back alignment and domain information |
|---|
| >gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase | Back alignment and domain information |
|---|
| >gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1378 | |||
| KOG1473 | 1414 | consensus Nucleosome remodeling factor, subunit NU | 100.0 | |
| PF02791 | 61 | DDT: DDT domain; InterPro: IPR004022 This domain i | 99.48 | |
| smart00571 | 63 | DDT domain in different transcription and chromoso | 99.43 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 98.92 | |
| PF15613 | 38 | WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2 | 98.9 | |
| PF15614 | 46 | WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3 | 98.7 | |
| PF11600 | 216 | CAF-1_p150: Chromatin assembly factor 1 complex p1 | 98.53 | |
| PF05066 | 72 | HARE-HTH: HB1, ASXL, restriction endonuclease HTH | 98.39 | |
| PF15612 | 50 | WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B | 98.24 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 98.18 | |
| KOG4364 | 811 | consensus Chromatin assembly factor-I [Chromatin s | 98.14 | |
| PTZ00121 | 2084 | MAEBL; Provisional | 98.12 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 98.12 | |
| PTZ00121 | 2084 | MAEBL; Provisional | 98.07 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 98.04 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 97.99 | |
| PF11600 | 216 | CAF-1_p150: Chromatin assembly factor 1 complex p1 | 97.88 | |
| KOG2891 | 445 | consensus Surface glycoprotein [General function p | 96.98 | |
| KOG2891 | 445 | consensus Surface glycoprotein [General function p | 96.88 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 96.65 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 96.58 | |
| PF15236 | 157 | CCDC66: Coiled-coil domain-containing protein 66 | 96.48 | |
| PF05262 | 489 | Borrelia_P83: Borrelia P83/100 protein; InterPro: | 96.44 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 96.01 | |
| PRK09510 | 387 | tolA cell envelope integrity inner membrane protei | 95.96 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 95.81 | |
| PF15236 | 157 | CCDC66: Coiled-coil domain-containing protein 66 | 95.42 | |
| PF05672 | 171 | MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 | 95.39 | |
| PF05672 | 171 | MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 | 95.12 | |
| KOG2412 | 591 | consensus Nuclear-export-signal (NES)-containing p | 94.7 | |
| KOG3054 | 299 | consensus Uncharacterized conserved protein [Funct | 94.63 | |
| KOG3054 | 299 | consensus Uncharacterized conserved protein [Funct | 94.6 | |
| KOG2412 | 591 | consensus Nuclear-export-signal (NES)-containing p | 93.39 | |
| PF13904 | 264 | DUF4207: Domain of unknown function (DUF4207) | 92.93 | |
| COG3064 | 387 | TolA Membrane protein involved in colicin uptake [ | 92.14 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 91.73 | |
| PRK12704 | 520 | phosphodiesterase; Provisional | 90.97 | |
| PRK00106 | 535 | hypothetical protein; Provisional | 90.85 | |
| PRK12704 | 520 | phosphodiesterase; Provisional | 90.47 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 90.32 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 88.0 | |
| PF02029 | 492 | Caldesmon: Caldesmon; InterPro: IPR006018 This gro | 87.6 | |
| PRK00106 | 535 | hypothetical protein; Provisional | 87.32 | |
| PF00769 | 246 | ERM: Ezrin/radixin/moesin family; InterPro: IPR011 | 84.59 | |
| KOG2689 | 290 | consensus Predicted ubiquitin regulatory protein [ | 84.45 | |
| KOG2689 | 290 | consensus Predicted ubiquitin regulatory protein [ | 81.61 |
| >KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=356.42 Aligned_cols=276 Identities=13% Similarity=0.083 Sum_probs=201.1
Q ss_pred ccccCCCCccCCCCceeecccCCCCCCCCCceeEEEecCc--cEEEecCHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 000640 764 VYRSLPLGQDRRRNRYWQFATSASRNDPCSGRIFVELHDG--TWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIETS 841 (1378)
Q Consensus 764 ~~R~~pLG~DR~~nRYW~f~~~~~~~dp~~grifVE~~dg--~W~~y~t~eeLd~Ll~~Ld~RG~RE~~L~~~L~k~~~~ 841 (1378)
.||+.|+|.||+.+.||++ ..||+||+.|+ .| ||+|.-+|..||.+||.- .=|+.|+..+..+.+.
T Consensus 409 ~iR~~~iG~dr~gr~ywfi----------~rrl~Ie~~det~l~-yysT~pqly~ll~cLd~~-~~e~~L~d~i~~~~ee 476 (1414)
T KOG1473|consen 409 SIRHTPIGRDRYGRKYWFI----------SRRLRIEGMDETLLW-YYSTCPQLYHLLRCLDRT-YVEMYLCDGIWERREE 476 (1414)
T ss_pred ceeccCCCcCccccchhce----------eeeeEEecCCCcEEE-EecCcHHHHHHHHHhchH-HHHHhhccchhhhHHH
Confidence 3799999999999999999 66999999988 66 999999999999999843 4688888888875555
Q ss_pred HHHHHHhhccCccc--cCcchhhh--hcccccccCCCCC-----------CCCCCCCCCccCCCCCcccCccchhhhccc
Q 000640 842 FKDKVRRNLQGIDT--VGQSWTAI--KNEAAEMDVDPDF-----------ASSDSPSSTVCGLNSDTLETSSSFRIELGR 906 (1378)
Q Consensus 842 i~e~m~k~~~~~~~--~~~~~~~~--~n~~~e~~~~~~~-----------~~~~sp~s~~~~~~~d~~~~s~s~~iElgr 906 (1378)
|- ++|..|.. +...+.+. ..-.+...++-+| .+..=|-+.|.++. +...++-+-+++- =
T Consensus 477 ~~----rqM~lT~~ltne~R~~~~f~~~~h~r~~l~~~c~~~lv~~iq~~~da~l~e~~l~~i~-k~v~~~~S~s~~~-e 550 (1414)
T KOG1473|consen 477 II----RQMGLTEELTNELRGAVDFGEDPHGRLFLGRDCAVLLVLCIQVVEDAILKEENLGDID-KVVLVLISASAHQ-E 550 (1414)
T ss_pred HH----HhccchhhhhhhhhcccccccCCCcceeeecchhhHHhhhhhhhhhhhhhHhhhcchH-hhhhhhhhcccch-H
Confidence 44 45544442 33332110 0000000000000 00000111111111 1111111111111 0
Q ss_pred chHHHHHHHHhHHHHHHHHHhhhcccccchhhcchhhhhhhhcccchhhhcccccccCCCCccccccCCCCCCccccchh
Q 000640 907 NEIEKKAALERFQDFQWWMWRECFNSLSLCASKNEKTRCRQLLVICDVCLDSYLCEDAHCPSCHRTFGAVDKSSKFSEHS 986 (1378)
Q Consensus 907 ~~~E~~~~~~R~q~f~kWmw~~~~~~~~l~a~k~Gkk~~~~~l~~c~~c~~~y~~~e~hc~~cH~tf~~~dl~~~fs~h~ 986 (1378)
.-.|...+.++|++.+ --|..+.+. .+|.++++.| .|.+++.......+.+..++.-| +.++|++|+
T Consensus 551 E~~e~ck~is~~~d~p--~~n~~~~~e--~~~dqtf~~y--~ys~n~vse~~~~d~e~~dkk~~-------~~tkf~l~~ 617 (1414)
T KOG1473|consen 551 EYVEICKAISQYWDLP--EGNLWRLRE--EGNDQTFMKY--YYSGNEVSEIFLTDSENADKKSH-------MQTKFALIT 617 (1414)
T ss_pred HHHHHHHHHhhccccc--ccchhhhhh--cccccchhhh--cccCCchhhccCCchhhhccccc-------ccceecccc
Confidence 2345588999999998 777777877 8999999999 89999999999999999999999 889999999
Q ss_pred hhhhhhhhcCcccccCCCCcchhHHHHHHHHHHHHHhcCChhhhhhhhhhhhhHHHHHhhcccCCHHHHHHHHHHHHhhh
Q 000640 987 IQCEEKTKLGLRDIHVSDSSLPLGIRLLKPLSAVIEAYIPPEALEASWTDERRKTWGMKLNMSSSAEEVLQLLTILESGI 1066 (1378)
Q Consensus 987 a~c~~K~~~~~~~~~~~~~~lp~~ir~LK~~L~~iEa~ip~eAL~~~W~~~~Rk~W~~~l~~ass~~ellqvL~~le~aI 1066 (1378)
+ ..+++.++--+++.. ...+.++..+|...++.||.++++..|... -|.|...|+.|-++.+|.-.|..+..++
T Consensus 618 n-sd~~~~g~~~t~gt~----~~~~~~~~~t~~~~lSniP~s~~n~~w~~~-tkg~~lavs~A~~~~el~s~t~~~d~s~ 691 (1414)
T KOG1473|consen 618 N-SDGVTAGNVTTYGTG----SQHKKLIARTLQQGLSNIPISYNNRKWPVY-TKGFELAVSAAADLAELSSETLEPDLSK 691 (1414)
T ss_pred c-ccceeccccccccch----hhcchHHHhhhhhhhccCchHhhhccchhh-ccchhhhhhccchHHHHHHhhcccchhh
Confidence 9 889988763355555 678889999999999999999999999887 9999999999999999999999999999
Q ss_pred cccccccccc
Q 000640 1067 KRSYLSSNFE 1076 (1378)
Q Consensus 1067 k~d~L~~~~~ 1076 (1378)
+..-..+.|+
T Consensus 692 ~~~~~~~~ss 701 (1414)
T KOG1473|consen 692 RSNAFKAASS 701 (1414)
T ss_pred hhhhhccchh
Confidence 9888777666
|
|
| >PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain | Back alignment and domain information |
|---|
| >smart00571 DDT domain in different transcription and chromosome remodeling factors | Back alignment and domain information |
|---|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2 | Back alignment and domain information |
|---|
| >PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3 | Back alignment and domain information |
|---|
| >PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [] | Back alignment and domain information |
|---|
| >PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2 | Back alignment and domain information |
|---|
| >PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PTZ00121 MAEBL; Provisional | Back alignment and domain information |
|---|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
| >PTZ00121 MAEBL; Provisional | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
| >PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [] | Back alignment and domain information |
|---|
| >KOG2891 consensus Surface glycoprotein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2891 consensus Surface glycoprotein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF15236 CCDC66: Coiled-coil domain-containing protein 66 | Back alignment and domain information |
|---|
| >PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins | Back alignment and domain information |
|---|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional | Back alignment and domain information |
|---|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF15236 CCDC66: Coiled-coil domain-containing protein 66 | Back alignment and domain information |
|---|
| >PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs) | Back alignment and domain information |
|---|
| >PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs) | Back alignment and domain information |
|---|
| >KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG3054 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG3054 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13904 DUF4207: Domain of unknown function (DUF4207) | Back alignment and domain information |
|---|
| >COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PRK12704 phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >PRK00106 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK12704 phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein | Back alignment and domain information |
|---|
| >PRK00106 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] | Back alignment and domain information |
|---|
| >KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 93.0 bits (230), Expect = 4e-19
Identities = 96/597 (16%), Positives = 173/597 (28%), Gaps = 170/597 (28%)
Query: 747 SRSQLKAYIAHMAEEMYVYRSLPLGQDRRRNRYWQFATSASR--------------NDPC 792
S+ ++ I R ++ +F R P
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 793 -SGRIFVELHDGTWRLIDTVEAFDALLSSLDARGTRESHLRIMLQKIETSFKDKVRRN-- 849
R+++E D RL + + F S R LR L ++ + +N
Sbjct: 107 MMTRMYIEQRD---RLYNDNQVFAKYNVS---RLQPYLKLRQALLEL------RPAKNVL 154
Query: 850 LQGIDTVGQSWTAI---KNEAAEMDVDP-----DFASSDSPSSTVCGLNS--------DT 893
+ G+ G++W A+ + + +D + + +SP + + L T
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 894 LETSSSFRIELGRNEIEKKAALERFQDFQWWMWRECFNSLSLCASKNEKTRCRQLLVICD 953
+ S I+L + I +A L R + + C LLV+ +
Sbjct: 215 SRSDHSSNIKLRIHSI--QAELRRL--LKSKPYENC------------------LLVLLN 252
Query: 954 VCLDSYLCEDAHCPSCHRTFGAVDKSSKFSEHSIQCEEKTKLGLRDIHVSDSSLPLGIRL 1013
V +A + + A + + C K L R V+D L
Sbjct: 253 VQ-------NA------KAWNAFN---------LSC--KILLTTRFKQVTDF-LSAATTT 287
Query: 1014 LKPLSAVIEAYIPPEALE--ASWTDERRKTWGMKLNMSSSA--EEVLQ----LLTI---- 1061
L P E + L+ EVL L+I
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKY-----------LDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 1062 LESGIKRS--YLSSNFETTKELLGSSFTCADP-------WSVPILP---WIPKTTAAVAL 1109
+ G+ + N + ++ SS +P + + P IP L
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL----L 392
Query: 1110 RLLELDASIMYVKPEKPEQFEE--------DKEANERV--IPSRYLPLKNKEVVLKELDQ 1159
L+ D V +K+ E IPS YL LK K L +
Sbjct: 393 SLIWFD-----VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 1160 DRLVKEENYSNLAGKRKNYRRGKGNRD-----H-GWSRKYHKKTPSITADVGRRTAR-EH 1212
+V ++Y N+ + D H G +H K + R
Sbjct: 448 -SIV--DHY-NIPKTFDSDDLIPPYLDQYFYSHIG----HHLK----NIEHPERMTLFRM 495
Query: 1213 EGLNLRLKQQGLRTNGRGRRTVRKRADRTSKNETFQGQMGHMVIPDSSSGLHRNLDE 1269
L+ R +Q +R + + + + ++ I D+ R ++
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY-----ICDNDPKYERLVNA 547
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene} Length = 240 | Back alignment and structure |
|---|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 | Back alignment and structure |
|---|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1378 | ||||
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 9e-08 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 4e-07 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 1e-06 | |
| d1f5na1 | 300 | a.114.1.1 (A:284-583) Interferon-induced guanylate | 2e-04 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 1e-06 | |
| d2es4d1 | 280 | a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) | 0.002 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 1e-06 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 6e-06 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 1e-04 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 3e-04 | |
| d1sa0e_ | 138 | a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus | 0.003 |
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (127), Expect = 9e-08
Identities = 19/102 (18%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 1 MEKKRKCDEARIAREVEANEIRIQKELERQDNLRRKNEERMRKEMEKHERERRKEE-ERL 59
EK+++ + R+ E ++ E++R++ + +ER +E K E+ + + +L
Sbjct: 200 TEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQL 259
Query: 60 MRERQREEERSLREQKREMERREKFLQKEYLRAEKRRLKEEL 101
++E++R L+EQ++ ++ + + ++ E + L+ ++
Sbjct: 260 LKEQERTLALKLQEQEQLLKEGFQ-KESRIMKNEIQDLQTKM 300
|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
| >d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00