Citrus Sinensis ID: 000672

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360

MEDKHSEDEKHEEVEDIESDSGDSFIVDSESDEPSISGQDDGLHLEEHLTEEEIEELIAEFLEVESKAAEAQEALELESLVKLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGSQVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGVDEVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRHRKISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNGISSVSDSALPDSSELRGIKRSNESEEPNSEKKRSRTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIVSSSESDSENSDADNNLKIGGKRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRCAVNGI

ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHcccccccccccHHHHHHHHHHHHHHHcccHHHHccccccccccccccccccccccccccccccccccHHHHHHHHccccccHHcccccccEEEccccccHHHHHHcccccccccccHHccccccccccHHHHHHHcccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccEEEEcccccEEEcccccccccccHHcccHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccccccccccccccccccccEEccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHccccEEEEcHHHHHHcccccccccHHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHccccccEEEEEccHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHccccccccccHHHcccHHHHHHHHHHHHcccccHHccccccccccccccccccccccccHHHccccccccccccccccccccccHHHHHHHccccccccccccccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHcccccccccccccccccEEEEcccccHHHHHHHHHHHcccccccccEEEEEccccccccccccccEEEEEccccccccHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHccc

ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHcccccccccccccccccccHHHHHHHcccccccccccccccccEEEEEcccHHHHHHHcccccccccHHEHHHHccccccHHHHHHHHccHHHcccHcccEEEEEcccHccccHHHHHHHHHHHHHHHHHHcHHHcccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccHHHccccccccccccccccccccEEEEccccHHHcccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccEEEEEEcccccEEEcccccccccccccEEEEccccccEEccccccccccHHHccccccHHHHHHHHcccccEEEcccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHccccccccHHHccEEEEcccccccccccEEHHHHHHcHccHHHHcHHHHHHHcccHHHcccccccccHHHHHcHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHHHccccEEEEEHHHHEccccccEEccHHHHHcHHHHHcccccEEEEcccHHEcccHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEccHHHHHHHHHHHHHcccHHcccccccccccHHHHHHHHHHHHccHHHHHccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccccccccHHccccHHHHHHHcccHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHccccccccccEEEEcEEEEEEcccccHHHHHHHHHHHcccccccEEEEEEEEccccccEEEccccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEEEcccHHHHHHHHHHHHHcHHHHHHccccccccccHHHHHHHHHcccccccccHHHcccccccccHHHHHHHHcccccccHcccccHHHHHHHHHcccccccccc

medkhsedekheevediesdsgdsfivdsesdepsisgqddglhleehLTEEEIEELIAEFLEVESKAAEAQEALELESLVKLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIenqvpngcctEAWKRRAHWVGSQVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIandgsenggkevsdinwnsvnkifsgdVSEKCAAFGSKHWASVYLASTPQQAaamglkfpgvdeveeiedvdgnsddpfVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRHrkiskqkeigsvdwtiedsavetrplvdaskslsnkktddgdmpgnnnEVALQNLETGVLESSVKErslsngissvsdsalpdsselrgikrsneseepnsekkrsrtiiigsdeadvvkdecstkledhsvspenindaatdnslhsqsLSEKFYCTACnnvaievhphpilnviVCKDCKCllekkmhvkdadcsecycvwcgrssdlvsckscktlfCTTCVKRniseaclsdevqascwqccccspsllKRLTSELGRamgsenlivsssesdsensdadnnlkiggkrkQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFssksklmnsvtldgdlsagaSIEVLGDAITGYIVNVVREkgeeavripssISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMkwrpselkplrVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAfrnlsfgkhvkdrNMAREICHAlqdgpdilvcdeahmikNTRADTTQALKQVKCQRrialtgsplqnnlMEYYCMVDfvregflgssHEFRNrfqnpiengqhtnstsedVKIMNQRSHILYEQLKGFVQRmdmnvvkkdlppktVFVITVKLSPLQRRLYKRFLDLhgftndrvsNEKIRKSFFAGYQALAQIwnhpgilqltkdkgypsredaedsssdenmdynvvigekprnmndflqgknddgffqKDWWNDLLhehtykeldysgKMVLLLDILTMCsnmgdkslvfsqsiptlDLIEFYlsklprpgkqgklwkkgkdwyrldgrtesSERQKLVERFNEPLNKRVKCTLIStragslginlhsanrviivdgswnptydLQAIYRAWrygqtkpvFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHlfefgddenpdpltavskengqgssqntncalkhklplshegcsdKLMESllgkhhprcavngi

medkhsedekheevediesdsgdSFIVDSESDEPSISGQDDGLHLEEHLTEEEIEELIAEFLEVESKAAEAQEALELESLVKLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGSQVTSEMRESIAgaedflqterpvRRRHGKLleegasgflqkkiandgsenggkevsdinWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGVDEVEEIEDVDGNSDDPFVADAIANEKelalseeqrkkfrkvkeeddanmdrklqlhlkrrrhrkiskqkeigsvdwtiedsavetrplvdaskslsnkktddgdmpgnNNEVALQNLETGVLESSVKERslsngissvsdsalpdsselrgikrsneseepnsekkrsrtiiigsdeadvvKDECSTKledhsvspeninDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMhvkdadcsecYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIvsssesdsensdadnnlkiggkrkqkkkirrilddaelgeetkrkiAIEKERQERLKSlqvqfssksklMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGeeavripssisaklkaHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFmkwrpselkplrVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRrialtgsplqnnlMEYYCMVDFVREGFLGSSHEFRNRFQNpiengqhtnstseDVKIMNQRSHILYEQLKGFVQRMDMNVVkkdlppktvfvitvklsplqRRLYKRFLDLhgftndrvsnEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSRedaedsssdenmDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLsklprpgkqgklwkkgkdwyrldgrtesserqklverfneplnkrvkCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMEsllgkhhprcavngi

MedkhsedekheevediesdSGDSFIVDSESDEPSISGQDDGlhleehlteeeieeliaefleveSKaaeaqealeleSLVKLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGSQVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGvdeveeiedvdGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDrklqlhlkrrrhrkISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNGIssvsdsalpdssELRGIkrsneseepnsekkrsrTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGsenlivsssesdsensdadnnLkiggkrkqkkkirriLDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSRedaedsssdeNMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRCAVNGI

*******************************************************ELIAEFLE*****************V************ALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGSQV******************************************************DINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGV***************************************************************************W******************************************************************************************************************************************EKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLT**************************************************************************************TLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF***********************MNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLT***********************VVIG******NDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLD*************RFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEF************************************************************

**************************************************EEEIEELIAEFLE****************************************VEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGSQV*********************************************************WNSVNKI****************WASVYLA**P*******LKFPGVDEVE***********************************************************************************************************************************************************************************************************************TACNNVAIEVHPHPILNVIVCKD***********************CGRSSDLVSCKSCKTLFCTTCV********************************************************************************************************************************************IVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDV******ELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPI*****************QRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDL*****************FAGYQALAQIWNHPGILQLTKDK***********************GEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAA******************HLFEFGDDE**********************************************HHPRCAVN**

********************SGDSFIV*************DGLHLEEHLTEEEIEELIAEFLEVESKAAEAQEALELESLVKLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGSQVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGVDEVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRHRKISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVL**************************LRGIKR**************RTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLI*************DNNLKIGGKRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDK**************ENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVS*********NTNCALKHKLPLSHEGCSDKLMESLLGKHHPRCAVNGI

************************************************LTEEEIEELIAEFLEVESKAAEAQEALELESLVKLKNEVREELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGSQVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIA*************INWNS**KIFS*******AAFGSKHWASVYLASTPQQAAAMGLKFPGVDEVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRHRKIS**************************************************************************************************************************************************LSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSEN**********************GKRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKL****TLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFT********IRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSS***NMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDD*************GQGSSQNTNCALKHKLPLS*EGCSDKLMESLLGKHHP*C*****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MEDKHSEDEKHEEVEDIESDSGDSFIVDSESDEPSISGQDDGLHLEEHLTEEExxxxxxxxxxxxxxxxxxxxxLELESLVKLKNEVREELAQALHGDDLEAAVEDEMTVYxxxxxxxxxxxxxxxxxxxxxxxxxxxxLPSLYRLIENQVPNGCCTEAWKRRAHWVGSQVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGVDEVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRHRKISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNGISSVSDSALPDSSELRGIKRSNESEEPNSEKKRSRTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIVSSSESDSENSDADNNLKIGGKRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQALAQIWNHPGILQLTKDKGYPSREDAEDSSSDENMDYNVVIGEKPRNMNDFLQGKNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEFYLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRCAVNGI

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1360	2.2.26 [Sep-21-2011]
A4IHD2		1396	Helicase ARIP4 OS=Xenopus	yes	no	0.456	0.444	0.370	1e-126
Q9Y4B4		1467	Helicase ARIP4 OS=Homo sa	yes	no	0.465	0.431	0.378	1e-126
Q99NG0		1466	Helicase ARIP4 OS=Mus mus	yes	no	0.466	0.433	0.380	1e-125
Q9GQN5		1311	Transcriptional regulator	yes	no	0.477	0.495	0.351	1e-121
P46100		2492	Transcriptional regulator	no	no	0.262	0.143	0.442	1e-86
Q7YQM4		2492	Transcriptional regulator	no	no	0.262	0.143	0.442	1e-86
Q7YQM3		2492	Transcriptional regulator	N/A	no	0.262	0.143	0.442	1e-86
Q61687		2476	Transcriptional regulator	no	no	0.262	0.144	0.445	2e-86
Q9DG67		918	DNA repair and recombinat	no	no	0.381	0.565	0.325	1e-69
B4MX21		784	DNA repair and recombinat	N/A	no	0.363	0.631	0.310	1e-69

>sp\|A4IHD2\|ARIP4_XENTR Helicase ARIP4 OS=Xenopus tropicalis GN=rad54l2 PE=2 SV=1	Back alignment and function desciption

 Score =  454 bits (1168), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 268/723 (37%), Positives = 397/723 (54%), Gaps = 102/723 (14%)

Query: 667  VQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITG------YIVNVVREKGEEAVRIPSSI 720
            +Q S  +   N V  DGD++   S   + DA+         +VN+     E+ + +   +
Sbjct: 208  LQISDNADSTNEV--DGDITTENSGSHVNDALNQADHLGRVLVNINHPPNEKDIFLAPQL 265

Query: 721  SAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV 780
            +  +K+HQ+ GIRF+++N+++S+ +  SG  G GCILAH+MGLGKT QVI+FL    +  
Sbjct: 266  ARAVKSHQIGGIRFLYDNLVESLERF-SGSSGFGCILAHSMGLGKTLQVISFLDVLFQHT 324

Query: 781  NLGLRTALIVTPVNVLHNWKQEFMKWRPS----------ELKPLRVFMLEDVSRDR---- 826
            +   +T L + PVN L NW  EF  W P           EL   R F +  ++ +     
Sbjct: 325  SA--KTVLAIVPVNTLQNWLAEFNMWLPPPESLPKDHNQELVQPRAFKVHTMNDEHKTTA 382

Query: 827  -RAELLAKWRAKGGVFLIGYTAFRNLSFGKHV-----------------------KDRNM 862
             RA+++  W   GGV L+GY  +R LS  K                         + + M
Sbjct: 383  ARAKVVNDWATDGGVLLMGYEMYRLLSLKKSFTAGRKKKSKKAAGPVIIDLDEEDRQQEM 442

Query: 863  AREICHAL-QDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYC 921
             + I  AL + GPD+++CDE H IKN  A T+QALK ++ +RR+ LTG PLQNNL+EY+C
Sbjct: 443  LKGIEKALSRPGPDVVICDEGHRIKNCHASTSQALKNIRSRRRVVLTGYPLQNNLIEYWC 502

Query: 922  MVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDM 981
            MVDFVR  FLG+  EF N F+ PI NGQ  +ST +D ++M  RSH+L+  L+GFVQR   
Sbjct: 503  MVDFVRPDFLGTRQEFSNMFERPILNGQCVDSTPQDKRLMRYRSHVLHSLLEGFVQRRGH 562

Query: 982  NVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRKSFFAGYQAL--- 1038
             V+K  LP K   VI V+LS +QR LY  F++            + R +  +G+  L   
Sbjct: 563  TVLKAQLPFKEEHVILVRLSKIQRDLYTEFMN------------RFRDAGNSGWLGLNPL 610

Query: 1039 ------AQIWNHPGILQLTKDKGYPSRE---DAEDSSSD------------ENMDYNVVI 1077
                   +IWNHP +L     K   + E   D ED  ++            E      ++
Sbjct: 611  KAFCVCCKIWNHPDVLYEALQKENLANEQDLDVEDLGTNNRCNAQSGKIKVEPNSLGALM 670

Query: 1078 GEKPRNMNDFLQG-------KNDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMC 1130
            GE        LQG       +  +     +W  ++L ++   +L  S KMVLL  ++   
Sbjct: 671  GETAHTKQ--LQGIVLNPSHEKANQVVTYEWAKEILSDYIPGQLQNSPKMVLLFHLIEES 728

Query: 1131 SNMGDKSLVFSQSIPTLDLIEFYLS--KLPRP----GKQGKLWKKGKDWYRLDGRTESSE 1184
              MGDK LVFSQS+ TL ++E +L+  K+P P    G++G  W +  ++YRLDG T +SE
Sbjct: 729  MRMGDKILVFSQSLSTLSIMEEFLAKRKMPIPAGSDGQEGHTWIRNVNYYRLDGSTSASE 788

Query: 1185 RQKLVERFNEPLNKRVKCTLISTRAGSLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRY 1244
            R++L+ +FN+P N++V   L+STRAG LG+NL  ANRV++ D SWNP +D QA+ R +RY
Sbjct: 789  RERLINQFNDPSNEKVWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRY 848

Query: 1245 GQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDE 1304
            GQ KP + YRL++  T+E+KIY RQ+TK+G++ RVVD        ++ E+ +L  F ++E
Sbjct: 849  GQRKPCYIYRLVSDFTLEKKIYDRQITKQGMSDRVVDDLNPEVNFTRREVENLLHFVEEE 908

Query: 1305 NPD 1307
             PD
Sbjct: 909  -PD 910

DNA helicase that modulates androgen receptor (AR)-dependent transactivation in a promoter-dependent manner.
Xenopus tropicalis (taxid: 8364)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp\|Q9Y4B4\|ARIP4_HUMAN Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=4	Back alignment and function description

>sp\|Q99NG0\|ARIP4_MOUSE Helicase ARIP4 OS=Mus musculus GN=Rad54l2 PE=1 SV=1	Back alignment and function description

>sp\|Q9GQN5\|ATRX_DROME Transcriptional regulator ATRX homolog OS=Drosophila melanogaster GN=XNP PE=1 SV=2	Back alignment and function description

>sp\|P46100\|ATRX_HUMAN Transcriptional regulator ATRX OS=Homo sapiens GN=ATRX PE=1 SV=5	Back alignment and function description

>sp\|Q7YQM4\|ATRX_PANTR Transcriptional regulator ATRX OS=Pan troglodytes GN=ATRX PE=2 SV=1	Back alignment and function description

>sp\|Q7YQM3\|ATRX_PONPY Transcriptional regulator ATRX OS=Pongo pygmaeus GN=ATRX PE=2 SV=1	Back alignment and function description

>sp\|Q61687\|ATRX_MOUSE Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=3	Back alignment and function description

>sp\|Q9DG67\|RA54B_CHICK DNA repair and recombination protein RAD54B OS=Gallus gallus GN=RAD54B PE=2 SV=1	Back alignment and function description

>sp\|B4MX21\|RAD54_DROWI DNA repair and recombination protein RAD54-like OS=Drosophila willistoni GN=okr PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1360
302143565		1477	unnamed protein product [Vitis vinifera]	0.971	0.894	0.749	0.0
359488066		1507	PREDICTED: uncharacterized protein LOC10	0.975	0.880	0.745	0.0
224125738		1404	chromatin remodeling complex subunit [Po	0.919	0.890	0.703	0.0
356574892		1485	PREDICTED: transcriptional regulator ATR	0.978	0.896	0.696	0.0
334182391		1479	DEAD-like helicase domain-containing pro	0.933	0.858	0.620	0.0
9802554		1471	F22O13.8 [Arabidopsis thaliana]	0.930	0.859	0.617	0.0
255561985		1447	conserved hypothetical protein [Ricinus	0.687	0.646	0.792	0.0
334182389		1458	DEAD-like helicase domain-containing pro	0.917	0.855	0.606	0.0
449470320		1628	PREDICTED: uncharacterized protein LOC10	0.728	0.608	0.724	0.0
110289185		1476	SNF2 domain-containing protein, putative	0.922	0.849	0.567	0.0

>gi\|302143565\|emb\|CBI22318.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1910 bits (4948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1012/1351 (74%), Positives = 1134/1351 (83%), Gaps = 30/1351 (2%)

Query: 37   SGQDDGLHLEEHLTEEEIEELIAEFLEVESKAAEAQEALELESLVKLKNEVREELAQALH 96
            SGQDDGLHLE  LTEEEIEELIAEFL+VESKAAEAQE+LE ESL KL+ EVREELAQ L 
Sbjct: 3    SGQDDGLHLEVTLTEEEIEELIAEFLDVESKAAEAQESLEEESLSKLEIEVREELAQTLQ 62

Query: 97   GDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCC 156
            G+DLE AV +EM  +KE+WEA LDELETESAHLLEQLDGAGIELPSLY+ IE+Q PNGCC
Sbjct: 63   GNDLETAVAEEMANFKEEWEAVLDELETESAHLLEQLDGAGIELPSLYKWIESQAPNGCC 122

Query: 157  TEAWKRRAHWVGSQVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDG 216
            TEAWK+R HW+GSQVT +  ESI  AE  LQT+RPVRRRHGKLLEEGASG+L  K+A+DG
Sbjct: 123  TEAWKQRVHWIGSQVTGDTTESIIEAEKHLQTDRPVRRRHGKLLEEGASGYLANKLASDG 182

Query: 217  SENGGKEVSDINWNSVNKIFSGDVSEKCAAFGSKHWASVYLASTPQQAAAMGLKFPGVDE 276
            +     E ++++W S NK FS   SE    FGS+HWASVYLASTPQQAA MGLKFPGVDE
Sbjct: 183  NREAVTENAEVDWCSFNKCFSDHASEDSTLFGSEHWASVYLASTPQQAAVMGLKFPGVDE 242

Query: 277  VEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQLHLKRRRH 336
            VEEI+D+DGNS DPFVADAIANE+ + LSEEQ+KKF+KVKEEDDAN+DRKLQLHLKRRR+
Sbjct: 243  VEEIDDIDGNSSDPFVADAIANERAVDLSEEQKKKFKKVKEEDDANIDRKLQLHLKRRRY 302

Query: 337  RKISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKT--DDGDMPGNNNEVALQNLETG 394
            RK S Q+ I   D   E+    +  L D S+++  +KT  D   +  NN++ A Q+ +T 
Sbjct: 303  RKRSTQETIQKEDRLAENILDNSVLLNDYSQAVLREKTRGDGVSISNNNDDGACQSSKTE 362

Query: 395  VLESSV------KERSLSNGISSV-SDSALPDSSELRGIKRSNESEEPNSEKKRSRTIII 447
            V ES        KER  SNG SSV S S LPDS+E +G KRS+++ E + + KR RT+II
Sbjct: 363  VSESLEMPDTLDKERPASNGNSSVLSGSVLPDSTETKGFKRSHDNGELDVDNKRFRTVII 422

Query: 448  GSDEADVVKDECS-------TKLEDHSVSPENINDAATDNSLHSQSLSEKFYCTACNNVA 500
             SD+        S       TK+E  SV  E   D     SL S+ ++  F+CTACN VA
Sbjct: 423  DSDDETHEVGNVSNSLVNNMTKMEGQSVLQETEGDFVGSGSLPSKHMNGNFHCTACNKVA 482

Query: 501  IEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTC 560
            IEVH HP+L VI+C DCKCL+E+KMHVKD DCSECYC WCGRS+DLV CKSCKTLFC TC
Sbjct: 483  IEVHCHPLLKVIICGDCKCLIERKMHVKDPDCSECYCGWCGRSNDLVGCKSCKTLFCITC 542

Query: 561  VKRNISEACLSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIVSSSESDSENSDAD 620
            +KRNI E CLSD V+AS WQCCCCSPSLL++LTSEL +A+GS +L VSSS+SDS++SD D
Sbjct: 543  IKRNIGEECLSD-VKASGWQCCCCSPSLLQQLTSELEKAIGSSSLTVSSSDSDSDDSDED 601

Query: 621  NNLKIGGKRKQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVT 680
             N+ I  KR++KKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFS KSK+MN+ +
Sbjct: 602  INVAISSKRRRKKKIRRILDDAELGEETKRKIAIEKERQERLKSLQVQFSEKSKMMNAAS 661

Query: 681  LDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENII 740
             +G+LS   S+EVLGDA  GYIVNVVREKGEEAVRIP SISAKLK HQ+ GIRFMWENII
Sbjct: 662  CNGNLSEDTSVEVLGDASKGYIVNVVREKGEEAVRIPPSISAKLKVHQITGIRFMWENII 721

Query: 741  QSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWK 800
            QSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRS++LGLRTALIVTPVNVLHNW+
Sbjct: 722  QSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSIDLGLRTALIVTPVNVLHNWR 781

Query: 801  QEFMKWRPSELKPLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDR 860
            QEF+KWRP ELKPLRVFMLEDVSR+RRAELLAKWRAKGGVFLIGY+AFRNLS GK+VKDR
Sbjct: 782  QEFIKWRPLELKPLRVFMLEDVSRERRAELLAKWRAKGGVFLIGYSAFRNLSLGKNVKDR 841

Query: 861  NMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYY 920
            +MAREIC+ALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYY
Sbjct: 842  HMAREICYALQDGPDILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYY 901

Query: 921  CMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMD 980
            CMVDFVREGFLGSSHEFRNRFQNPIENGQH NSTS+DVKIMNQRSHILYEQLKGFVQRMD
Sbjct: 902  CMVDFVREGFLGSSHEFRNRFQNPIENGQHMNSTSDDVKIMNQRSHILYEQLKGFVQRMD 961

Query: 981  MNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDRVSNEKIRK-SFFAGYQALA 1039
            M+VVK DLPPKTVFV+ VKLS LQR+LYKRFLD+HGFTND+VS++KIRK  FFAGYQALA
Sbjct: 962  MSVVKNDLPPKTVFVMAVKLSSLQRKLYKRFLDVHGFTNDKVSSDKIRKRCFFAGYQALA 1021

Query: 1040 QIWNHPGILQLTK-DKGYPSRED------AEDSSSDENMDYNVVIGEKPRNMNDFLQGKN 1092
            QIWNHPGILQLTK +K Y  RED      A+DSSSD+N+DYN V+GEK RN N+  QGK 
Sbjct: 1022 QIWNHPGILQLTKEEKDYARREDGVENFLADDSSSDDNIDYNTVLGEKVRNKNEIQQGKV 1081

Query: 1093 DDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFSQSIPTLDLIEF 1152
            D G +QK WWNDLLHE+ YKE+DYSGKMVLLLDILTMC+++GDK+LVFSQS+ TLDLIE+
Sbjct: 1082 DSGLYQKGWWNDLLHENNYKEVDYSGKMVLLLDILTMCADVGDKALVFSQSLSTLDLIEY 1141

Query: 1153 YLSKLPRPGKQGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSL 1212
            YLSKL R GK+GK WK+GKDWYRLDGRTE SERQKLVERFN+PLNKRVKCTLISTRAGSL
Sbjct: 1142 YLSKLSRQGKKGKCWKQGKDWYRLDGRTEGSERQKLVERFNDPLNKRVKCTLISTRAGSL 1201

Query: 1213 GINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK 1272
            GINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK
Sbjct: 1202 GINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK 1261

Query: 1273 EGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNC----AL 1328
            EGLAARVVDRQQVHRTISKEEMLHLF+FGDDENPD L    KE    ++QN       +L
Sbjct: 1262 EGLAARVVDRQQVHRTISKEEMLHLFDFGDDENPDILPERGKEEEHTTNQNMTGQVGNSL 1321

Query: 1329 KHKLPLSHEGC-SDKLMESLLGKHHPRCAVN 1358
            K KL LSH  C SDKLMESLL +H+PR   N
Sbjct: 1322 KDKLSLSHGSCSSDKLMESLLVRHYPRWIAN 1352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359488066\|ref\|XP_002263799.2\| PREDICTED: uncharacterized protein LOC100244360 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224125738\|ref\|XP_002319663.1\| chromatin remodeling complex subunit [Populus trichocarpa] gi\|222858039\|gb\|EEE95586.1\| chromatin remodeling complex subunit [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356574892\|ref\|XP_003555577.1\| PREDICTED: transcriptional regulator ATRX-like [Glycine max]	Back alignment and taxonomy information

>gi|334182391|ref|NP_001184937.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|334182393|ref|NP_001184938.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|334182395|ref|NP_001184939.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|332190193|gb|AEE28314.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|332190194|gb|AEE28315.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi|332190195|gb|AEE28316.1| DEAD-like helicase domain-containing protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|9802554\|gb\|AAF99756.1\|AC003981_6 F22O13.8 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|255561985\|ref\|XP_002522001.1\| conserved hypothetical protein [Ricinus communis] gi\|223538805\|gb\|EEF40405.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|334182389\|ref\|NP_172336.4\| DEAD-like helicase domain-containing protein [Arabidopsis thaliana] gi\|332190192\|gb\|AEE28313.1\| DEAD-like helicase domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449470320\|ref\|XP_004152865.1\| PREDICTED: uncharacterized protein LOC101218346 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|110289185\|gb\|ABB47753.2\| SNF2 domain-containing protein, putative, expressed [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1360
UNIPROTKB\|K7GSF7		2372	LOC100514440 "Uncharacterized	0.3	0.172	0.413	4.7e-143
UNIPROTKB\|F1MQ85		2473	ATRX "Uncharacterized protein"	0.3	0.164	0.413	4.7e-142
UNIPROTKB\|F1PKC1		2489	ATRX "Uncharacterized protein"	0.3	0.163	0.413	1.2e-141
UNIPROTKB\|F1LM36		2467	F1LM36 "Uncharacterized protei	0.3	0.165	0.413	2.9e-141
UNIPROTKB\|E1C8H5		2434	ATRX "Uncharacterized protein"	0.3	0.167	0.415	1e-140
MGI\|MGI:103067		2476	Atrx "alpha thalassemia/mental	0.3	0.164	0.413	1.8e-140
UNIPROTKB\|P46100		2492	ATRX "Transcriptional regulato	0.3	0.163	0.411	4.9e-140
ZFIN\|ZDB-GENE-030912-11		2011	atrx "alpha thalassemia/mental	0.299	0.202	0.400	2.4e-139
UNIPROTKB\|F1RPI9		988	LOC100514440 "Uncharacterized	0.3	0.412	0.412	5.7e-138
ZFIN\|ZDB-GENE-030131-3097		1437	rad54l2 "RAD54-like 2 (S. cere	0.362	0.343	0.389	2.3e-109

UNIPROTKB\|K7GSF7 LOC100514440 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

 Score = 820 (293.7 bits), Expect = 4.7e-143, Sum P(5) = 4.7e-143
 Identities = 177/428 (41%), Positives = 257/428 (60%)

Query:   639 LDDAELGEETKRKIAIEKERQERLKSLQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAI 698
             L D +L  ET+  +   KE +ER K +  +   + KL   + ++        I       
Sbjct:  1439 LKDDKLRTETQNAL---KEEEERRKRIAEREREREKLREVIEIEDASPTKCPIT------ 1489

Query:   699 TGYIVNVVREKGEEAVRIPSSISAKLKAHQVVGIRFMWENIIQSIRKVKSGDKGLGCILA 758
             T  +++   E  E  V++  ++  KLK HQV G++FMW+   +S++K K    G GCILA
Sbjct:  1490 TKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSP-GSGCILA 1548

Query:   759 HTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKWRPS--ELKPLRV 816
             H MGLGKT QV++FL+T +    L   TAL+V P+N   NW  EF KW+    + + L V
Sbjct:  1549 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEV 1608

Query:   817 FMLEDVSRDR-RAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREICHALQD-GP 874
               L  V R + R+ +L +W+  GGV +IGY  +RNL+ G++VK R +      AL D GP
Sbjct:  1609 SELATVKRPQERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGP 1668

Query:   875 DILVCDEAHMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSS 934
             D +VCDE H++KN  +  ++A+  ++ +RRI LTG+PLQNNL+EY+CMV+F++E  LGS 
Sbjct:  1669 DFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSI 1728

Query:   935 HEFRNRFQNPIENGQHTNSTSEDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVF 994
              EFRNRF NPI+NGQ  +ST  DV++M +R+HILYE L G VQR D   + K LPPK  +
Sbjct:  1729 KEFRNRFINPIQNGQCADSTMVDVRVMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEY 1788

Query:   995 VITVKLSPLQRRLYKRFLD-LHGFTNDRVSNE-KIRKSFFAGYQALAQIWNHPGILQLT- 1051
             V+ V+++P+Q +LY+ +LD L G  N       K     F  +Q L++IW HP  LQL  
Sbjct:  1789 VLAVRMTPIQCKLYQYYLDHLTGVGNSSEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDY 1848

Query:  1052 ---KDKGY 1056
                ++KGY
Sbjct:  1849 ISKENKGY 1856

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB\|F1MQ85 ATRX "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PKC1 ATRX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1LM36 F1LM36 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C8H5 ATRX "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:103067 Atrx "alpha thalassemia/mental retardation syndrome X-linked homolog (human)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|P46100 ATRX "Transcriptional regulator ATRX" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030912-11 atrx "alpha thalassemia/mental retardation syndrome X-linked homolog (human)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RPI9 LOC100514440 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-3097 rad54l2 "RAD54-like 2 (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	LOW CONFIDENCE prediction!
3rd Layer	3.6.4	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	CHR923	chromatin remodeling complex subunit (1404 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1360
pfam00176		301	pfam00176, SNF2_N, SNF2 family N-terminal domain	1e-67
COG0553		866	COG0553, HepA, Superfamily II DNA/RNA helicases, S	4e-67
cd11726		127	cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-tha	4e-46
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	1e-28
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	2e-23
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	3e-18
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	5e-17
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	1e-16
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	3e-15
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	2e-13
cd11672		120	cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD	1e-12
cd11725		126	cd11725, ADDz_Dnmt3, ADDz domain of DNA (cytosine-	2e-07
cd11729		137	cd11729, ADDz_Dnmt3a, ADDz domain of DNA (cytosine	2e-05
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002

>gnl\|CDD\|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain	Back alignment and domain information

 Score =  230 bits (588), Expect = 1e-67
 Identities = 100/331 (30%), Positives = 158/331 (47%), Gaps = 39/331 (11%)

Query: 727  HQVVGIRFMW--ENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGL 784
            +Q+ G+ ++   E+             GLG ILA  MGLGKT Q IA L T ++      
Sbjct: 1    YQLEGVNWLISLES------------NGLGGILADEMGLGKTLQTIALLATYLKEGKDRR 48

Query: 785  RTALIVTPVNVLHNWKQEFMKWRPSELKPLRV--FMLEDVSRDRRAELLAKWRAKGGVFL 842
               L+V P++ LHNW  EF KW P     LRV  +  +   R +  + +AK      V +
Sbjct: 49   GPTLVVCPLSTLHNWLNEFEKWAP----ALRVVVYHGDGRERSKLRQSMAKRLDTYDVVI 104

Query: 843  IGY-TAFRNLSFGKHVKDRNMAREICHALQDGPDILVCDEAHMIKNTRADTTQALKQVKC 901
              Y    ++      +      R            +V DEAH +KN+++   +ALK++K 
Sbjct: 105  TTYEVLRKDKKLLSLLNKVEWDR------------VVLDEAHRLKNSKSKLYKALKKLKT 152

Query: 902  QRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIM 961
            + R+ LTG+P+QNNL E + +++F+R G  GS   F   F  PI N    ++ +++++  
Sbjct: 153  RNRLLLTGTPIQNNLEELWALLNFLRPGPFGSFKVFEEWFNIPIANTA--DNKNKNLEKG 210

Query: 962  NQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHG-FTND 1020
             +  + L++ LK F+ R   + V+K LPPKT  V+   LS  QR+LYK+ L       + 
Sbjct: 211  KEGINRLHKLLKPFLLRRTKDDVEKSLPPKTEHVLYCNLSDEQRKLYKKLLTKRRLALSF 270

Query: 1021 RVSNEKIR---KSFFAGYQALAQIWNHPGIL 1048
             V   +      S       L +I NHP + 
Sbjct: 271  AVEGGEKNVGIASLLNLIMQLRKICNHPYLF 301

This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301

>gnl\|CDD\|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|213034 cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-thalassemia/mental retardation, X-linked)	Back alignment and domain information

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|213032 cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD-like zinc finger domain	Back alignment and domain information

>gnl\|CDD\|213033 cd11725, ADDz_Dnmt3, ADDz domain of DNA (cytosine-5) methyltransferases (C5-MTases) 3 (Dnmt3)	Back alignment and domain information

>gnl\|CDD\|213037 cd11729, ADDz_Dnmt3a, ADDz domain of DNA (cytosine-5) methyltransferases (C5-MTases) 3 a (Dnmt3a)	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1360
KOG1015		1567	consensus Transcription regulator XNP/ATRX, DEAD-b	100.0
KOG0387		923	consensus Transcription-coupled repair protein CSB	100.0
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	100.0
KOG1016		1387	consensus Predicted DNA helicase, DEAD-box superfa	100.0
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	100.0
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	100.0
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	100.0
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	100.0
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	100.0
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	100.0
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	100.0
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	100.0
KOG4439		901	consensus RNA polymerase II transcription terminat	100.0
KOG1002		791	consensus Nucleotide excision repair protein RAD16	100.0
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	100.0
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	100.0
PRK04914		956	ATP-dependent helicase HepA; Validated	100.0
KOG1001		674	consensus Helicase-like transcription factor HLTF/	100.0
KOG0383		696	consensus Predicted helicase [General function pre	100.0
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	100.0
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	100.0
PRK13766		773	Hef nuclease; Provisional	100.0
KOG0298		1394	consensus DEAD box-containing helicase-like transc	99.97
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.96
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.94
PHA02558		501	uvsW UvsW helicase; Provisional	99.94
KOG1123		776	consensus RNA polymerase II transcription initiati	99.91
KOG0354		746	consensus DEAD-box like helicase [General function	99.91
PTZ00110		545	helicase; Provisional	99.88
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	99.87
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	99.87
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	99.87
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	99.87
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	99.86
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	99.86
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	99.86
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	99.85
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.85
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	99.84
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.84
PTZ00424		401	helicase 45; Provisional	99.84
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.83
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	99.83
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.82
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	99.81
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.81
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	99.8
PRK13767		876	ATP-dependent helicase; Provisional	99.8
PRK10689		1147	transcription-repair coupling factor; Provisional	99.79
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	99.78
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	99.76
PRK02362		737	ski2-like helicase; Provisional	99.75
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.74
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	99.73
PRK01172		674	ski2-like helicase; Provisional	99.72
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.71
PRK00254		720	ski2-like helicase; Provisional	99.71
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.67
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.66
COG4096		875	HsdR Type I site-specific restriction-modification	99.65
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.64
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	99.63
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.61
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.61
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	99.61
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.58
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.58
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	99.58
PHA02653		675	RNA helicase NPH-II; Provisional	99.57
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.57
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	99.56
COG1205		851	Distinct helicase family with a unique C-terminal	99.55
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.55
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.55
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.55
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	99.54
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.54
KOG0343		758	consensus RNA Helicase [RNA processing and modific	99.53
COG4889		1518	Predicted helicase [General function prediction on	99.52
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	99.52
PRK09401		1176	reverse gyrase; Reviewed	99.52
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	99.52
PRK05580		679	primosome assembly protein PriA; Validated	99.51
COG1204		766	Superfamily II helicase [General function predicti	99.48
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.46
KOG4284		980	consensus DEAD box protein [Transcription]	99.45
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	99.45
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	99.44
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	99.42
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.4
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	99.4
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.4
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	99.39
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	99.38
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.38
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.37
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	99.37
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.37
PRK09694		878	helicase Cas3; Provisional	99.36
KOG0347		731	consensus RNA helicase [RNA processing and modific	99.34
COG1202		830	Superfamily II helicase, archaea-specific [General	99.31
PRK14701		1638	reverse gyrase; Provisional	99.31
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.31
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	99.3
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	99.29
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.29
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	99.28
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.24
PRK12904		830	preprotein translocase subunit SecA; Reviewed	99.2
PRK13107		908	preprotein translocase subunit SecA; Reviewed	99.18
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	99.15
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.13
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	99.13
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	99.12
KOG0346		569	consensus RNA helicase [RNA processing and modific	99.12
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.11
KOG0334		997	consensus RNA helicase [RNA processing and modific	99.11
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.1
PRK05298		652	excinuclease ABC subunit B; Provisional	99.09
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	99.08
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	99.08
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.03
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	99.01
KOG0327		397	consensus Translation initiation factor 4F, helica	98.96
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	98.93
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	98.91
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	98.9
PRK12326		764	preprotein translocase subunit SecA; Reviewed	98.85
PF11496		297	HDA2-3: Class II histone deacetylase complex subun	98.82
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	98.81
KOG1513		1300	consensus Nuclear helicase MOP-3/SNO (DEAD-box sup	98.76
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	98.7
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	98.67
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	98.64
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	98.57
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	98.55
COG0610		962	Type I site-specific restriction-modification syst	98.48
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	98.47
KOG0353		695	consensus ATP-dependent DNA helicase [General func	98.44
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	98.32
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	98.3
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	98.26
PRK15483		986	type III restriction-modification system StyLTI en	98.2
COG1198		730	PriA Primosomal protein N' (replication factor Y)	98.15
KOG4299		613	consensus PHD Zn-finger protein [General function	98.13
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	98.1
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	98.1
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	98.08
CHL00122		870	secA preprotein translocase subunit SecA; Validate	98.08
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	98.07
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	98.03
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	98.01
PF13871		278	Helicase_C_4: Helicase_C-like	97.96
KOG0922		674	consensus DEAH-box RNA helicase [RNA processing an	97.9
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	97.84
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	97.83
KOG0926		1172	consensus DEAH-box RNA helicase [RNA processing an	97.82
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	97.8
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	97.74
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	97.69
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	97.63
KOG0920		924	consensus ATP-dependent RNA helicase A [RNA proces	97.61
PF00628		51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	97.57
KOG1244		336	consensus Predicted transcription factor Requiem/N	97.44
KOG0924		1042	consensus mRNA splicing factor ATP-dependent RNA h	97.36
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	97.27
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.23
smart00249		47	PHD PHD zinc finger. The plant homeodomain (PHD) f	97.2
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	97.13
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	97.13
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	97.06
PRK10536		262	hypothetical protein; Provisional	97.04
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	97.03
KOG1473		1414	consensus Nucleosome remodeling factor, subunit NU	96.91
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	96.77
PF12340		229	DUF3638: Protein of unknown function (DUF3638); In	96.44
COG3587		985	Restriction endonuclease [Defense mechanisms]	96.34
KOG1803		649	consensus DNA helicase [Replication, recombination	96.26
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.14
KOG4323		464	consensus Polycomb-like PHD Zn-finger protein [Gen	96.14
KOG0923		902	consensus mRNA splicing factor ATP-dependent RNA h	96.04
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	96.02
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	95.88
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	95.66
KOG1802		935	consensus RNA helicase nonsense mRNA reducing fact	95.65
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	95.47
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	95.35
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	95.23
PRK14873		665	primosome assembly protein PriA; Provisional	95.23
TIGR00376		637	DNA helicase, putative. The gene product may repre	95.11
KOG1131		755	consensus RNA polymerase II transcription initiati	94.9
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	94.8
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	94.47
KOG1973		274	consensus Chromatin remodeling protein, contains P	94.43
PRK10875		615	recD exonuclease V subunit alpha; Provisional	94.29
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	94.2
KOG1512		381	consensus PHD Zn-finger protein [General function	94.17
KOG1805		1100	consensus DNA replication helicase [Replication, r	93.99
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	93.99
PRK04296		190	thymidine kinase; Provisional	93.72
TIGR01447		586	recD exodeoxyribonuclease V, alpha subunit. This f	93.68
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	93.25
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	93.18
KOG1132		945	consensus Helicase of the DEAD superfamily [Replic	93.05
KOG0825		1134	consensus PHD Zn-finger protein [General function	92.99
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	92.5
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	92.38
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	92.37
KOG1473		1414	consensus Nucleosome remodeling factor, subunit NU	92.37
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	92.09
COG1875		436	NYN ribonuclease and ATPase of PhoH family domains	92.09
smart00382		148	AAA ATPases associated with a variety of cellular	91.78
KOG4299		613	consensus PHD Zn-finger protein [General function	91.49
KOG0957		707	consensus PHD finger protein [General function pre	90.73
PRK08116		268	hypothetical protein; Validated	90.59
COG5432		391	RAD18 RING-finger-containing E3 ubiquitin ligase [	90.51
CHL00181		287	cbbX CbbX; Provisional	90.33
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	89.93
KOG4443		694	consensus Putative transcription factor HALR/MLL3,	89.67
KOG0925		699	consensus mRNA splicing factor ATP-dependent RNA h	89.49
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	89.43
PRK06526		254	transposase; Provisional	89.11
PHA02533		534	17 large terminase protein; Provisional	88.74
cd01124		187	KaiC KaiC is a circadian clock protein primarily f	87.83
PF13245		76	AAA_19: Part of AAA domain	87.83
KOG0989		346	consensus Replication factor C, subunit RFC4 [Repl	87.22
PRK05707		328	DNA polymerase III subunit delta'; Validated	86.6
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	86.56
PRK11889		436	flhF flagellar biosynthesis regulator FlhF; Provis	86.03
COG5034		271	TNG2 Chromatin remodeling protein, contains PhD zi	86.02
COG3421		812	Uncharacterized protein conserved in bacteria [Fun	85.79
PRK05703		424	flhF flagellar biosynthesis regulator FlhF; Valida	85.52
PF06745		226	KaiC: KaiC; InterPro: IPR014774 This entry represe	85.09
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	84.89
PF10497		105	zf-4CXXC_R1: Zinc-finger domain of monoamine-oxida	84.84
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	84.75
PRK14956		484	DNA polymerase III subunits gamma and tau; Provisi	84.58
PRK08769		319	DNA polymerase III subunit delta'; Validated	84.52
PF05876		557	Terminase_GpA: Phage terminase large subunit (GpA)	84.38
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	84.13
smart00492		141	HELICc3 helicase superfamily c-terminal domain.	84.05
TIGR02768		744	TraA_Ti Ti-type conjugative transfer relaxase TraA	83.78
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	83.69
PRK14974		336	cell division protein FtsY; Provisional	83.2
PLN03025		319	replication factor C subunit; Provisional	83.19
PTZ00112		1164	origin recognition complex 1 protein; Provisional	83.15
smart00491		142	HELICc2 helicase superfamily c-terminal domain.	83.08
cd04718		148	BAH_plant_2 BAH, or Bromo Adjacent Homology domain	82.71
PRK09112		351	DNA polymerase III subunit delta'; Validated	82.18
PRK08727		233	hypothetical protein; Validated	82.08
PF00580		315	UvrD-helicase: UvrD/REP helicase N-terminal domain	81.91
PRK07994		647	DNA polymerase III subunits gamma and tau; Validat	81.83
PRK07764		824	DNA polymerase III subunits gamma and tau; Validat	81.7
PRK14087		450	dnaA chromosomal replication initiation protein; P	81.24
PRK08084		235	DNA replication initiation factor; Provisional	81.16
PF13177		162	DNA_pol3_delta2: DNA polymerase III, delta subunit	81.15
PRK12402		337	replication factor C small subunit 2; Reviewed	80.95
PRK00149		450	dnaA chromosomal replication initiation protein; R	80.81
KOG3612		588	consensus PHD Zn-finger protein [General function	80.53
PRK13889		988	conjugal transfer relaxase TraA; Provisional	80.44
KOG0954		893	consensus PHD finger protein [General function pre	80.36
PRK08181		269	transposase; Validated	80.27
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	80.11
TIGR01837		118	PHA_granule_1 poly(hydroxyalkanoate) granule-assoc	80.08
KOG1081		463	consensus Transcription factor NSD1 and related SE	80.04

>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]	Back alignment and domain information

Probab=100.00  E-value=3.3e-181  Score=1592.49  Aligned_cols=1205  Identities=32%  Similarity=0.436  Sum_probs=1001.7

Q ss_pred             cccccccccccCCCccccCCCCCCCCCCCCCCCccccccCCHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHH
Q 000672           10 KHEEVEDIESDSGDSFIVDSESDEPSISGQDDGLHLEEHLTEEEIEELIAEFLEVESKAAEAQEALELESLVKLKNEVRE   89 (1360)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (1360)
                      +++..+++.+.+..+ ++.++.++.-+...+++..++.++..+++.+++..++.++++.                     
T Consensus        70 ~~~~~~~~~~~~~~t-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------------------  127 (1567)
T KOG1015|consen   70 EQSFTSLEVRKVAET-KEKSKHLKTKTCKKVQDGLSDIAEKFLKKDQSDETSEDDKKQS---------------------  127 (1567)
T ss_pred             hhhHHHHHHHhhhhc-cccchhhhhHhhhhhcccchhhhhhHhhhhcchhhhHHHHHHH---------------------
Confidence            344555555555554 7888888999999999999999999999999999888887753                     


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhccCCCchhHHHHHHhhCCCccchHhhhcccccccc
Q 000672           90 ELAQALHGDDLEAAVEDEMTVYKEQWEAALDELETESAHLLEQLDGAGIELPSLYRLIENQVPNGCCTEAWKRRAHWVGS  169 (1360)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (1360)
                                 ..||+.+|.+|+-+|++.++|+++||+.+++|++++|+|||-+|+.|++++|++|.||+|++++||+|+
T Consensus       128 -----------~~~~~~~~~~~~~~~~~~~~e~~~es~s~~~~~~~~~~e~~~~~~gik~~~~~~td~e~~~~~~~d~~~  196 (1567)
T KOG1015|consen  128 -----------KKGTEEKKKPSDFKKKVIKMEQQYESSSDGTEKLPEREEICHFPKGIKQIKNGTTDGEKKSKKIRDKTS  196 (1567)
T ss_pred             -----------hHhHHhhcCCchhHHHHHHHHHhhhcccchhhhccccccccchhhhhcccCCCCcchhhcccccccccc
Confidence                       457889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHhhHhhhhhcchhhhcccchhhcccccccchhccCCCCCCCCcccccccccchhhhccCCcccccccccc
Q 000672          170 QVTSEMRESIAGAEDFLQTERPVRRRHGKLLEEGASGFLQKKIANDGSENGGKEVSDINWNSVNKIFSGDVSEKCAAFGS  249 (1360)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (1360)
                      +++.+..||..+++-.+.+++|+++||||+++||++||++|++......+.....++.+|.+.|+-+.+++ ...-.||+
T Consensus       197 ~~~ve~sES~~~s~~~~esed~~~~r~~kn~~egrekk~~K~l~k~~~k~~~~~ssd~dk~sakk~~~~ss-dE~v~~~e  275 (1567)
T KOG1015|consen  197 KKKVELSESAEKSTGKGESEDSSEDRKSKNGAEGREKKRCKLLGKSSRKRQDCSSSDTDKYSAKKDGCNSS-DERVKRIE  275 (1567)
T ss_pred             ceehhhhhhhhhccccccccCcchhhhhhhhhhhhhhHHHHHhccchhhhcccCCCchhhhhhhhcccccc-cccchhhh
Confidence            99999999999999999999999999999999999999999999876655566889999999999999988 88899999


Q ss_pred             ccceeeeecCCHHHHHHccCCCCCCccccccccccCCCCChhHHHHhcchhhhcccHHHHHhhcccccchhhhhhHHHHH
Q 000672          250 KHWASVYLASTPQQAAAMGLKFPGVDEVEEIEDVDGNSDDPFVADAIANEKELALSEEQRKKFRKVKEEDDANMDRKLQL  329 (1360)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (1360)
                      ..|+++||||+|.++++||+.||||.|++|++|++...++||.+++|-+|+|..+.++|...|..+.||||...++-+|.
T Consensus       276 ~~pr~~llsS~ktkerasg~s~sd~~es~E~ed~kksk~s~~~k~vi~keKern~k~a~~ts~s~~eeeDde~es~~~~~  355 (1567)
T KOG1015|consen  276 LRPRRNLLSSRKTKERASGSSSSDAEESSEDEDKKKSKTSSKKKAVIVKEKERNRKQADITSSSSSEEEDDEQESIGEGS  355 (1567)
T ss_pred             hhhHhhhccCcchhhhhccCCcCCccccchhhhhhhhccchhhhhhhhHHHHhhhhhhhcccccccchhhhhhhhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHhhhhhcccccccccccccccccccccccccccccccCCCCCCCCCCCCCchhhhhhcccccccccccccccCCCC
Q 000672          330 HLKRRRHRKISKQKEIGSVDWTIEDSAVETRPLVDASKSLSNKKTDDGDMPGNNNEVALQNLETGVLESSVKERSLSNGI  409 (1360)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (1360)
                      +|+++++.++.+|+.++++ .++.++++..+-               -.|..|        -.        +.....+++
T Consensus       356 ~lkkk~kqk~~kq~sskss-ees~dd~~~r~~---------------kk~t~n--------~a--------Ka~~ss~eT  403 (1567)
T KOG1015|consen  356 SLKKKIKQKSGKQASSKSS-EESVDDPENRIA---------------KKMTLN--------EA--------KANLSSDET  403 (1567)
T ss_pred             cchHhhhhccchhhhhhcc-hhccccHHHHhh---------------hhcchH--------HH--------HhhhcCCCc
Confidence            9999999999999999888 556666554420               000000        00        001112222


Q ss_pred             cccCCCCCCCchhhhcccccCCCCCCCcccccceEEEecCCCcccccccccccccCCCCCccccccccccccccccCCCC
Q 000672          410 SSVSDSALPDSSELRGIKRSNESEEPNSEKKRSRTIIIGSDEADVVKDECSTKLEDHSVSPENINDAATDNSLHSQSLSE  489 (1360)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (1360)
                      +..     -|+.| +++|++....+..+..+.+.+-+ +++..                            +...+.--.
T Consensus       404 s~~-----s~esE-~~sk~sgk~~es~~~~e~~s~~~-n~~s~----------------------------~dsk~~~k~  448 (1567)
T KOG1015|consen  404 SSS-----SDESE-EGSKRSGKQNESNPGDEEASNQV-NSESD----------------------------SDSKESKKP  448 (1567)
T ss_pred             ccc-----ccccc-cchhhhcccccCCCCcccccccc-ccccc----------------------------cccccccCc
Confidence            211     12222 34444433333333333322211 11110                            001222334


Q ss_pred             ceeeccCccccccccccccccccccCcchhhhhhcCcccCCCCCcccccccCCCCceeecCCcccccchhhhcccCCccc
Q 000672          490 KFYCTACNNVAIEVHPHPILNVIVCKDCKCLLEKKMHVKDADCSECYCVWCGRSSDLVSCKSCKTLFCTTCVKRNISEAC  569 (1360)
Q Consensus       490 ~~~C~~Cg~~~~~~~~HP~l~~~~C~~C~~~~~~~~~~~d~d~~~~~C~~C~~gg~l~~Cd~C~~~fc~~Cl~~~~~~~~  569 (1360)
                      .+.|++|.+.....+.||..+++.|+.|..... ..-...++..+..|.||+..-.+.-|..|++.||..|...+.+...
T Consensus       449 ~~r~~~~~K~~vsd~e~peekkt~~k~ksR~~~-~~sSese~d~d~eee~~s~~~~~~e~~~~~k~~sa~e~~~esd~Ev  527 (1567)
T KOG1015|consen  449 RYRRLLRHKLTVSDGESPEEKKTKPKEKSRNRR-KVSSESEEDSDFEEEGVSEEVSESEDEQRPKTRSAKEAELESDQEV  527 (1567)
T ss_pred             chhhhhhcchhhcccccchhhhcchhhhccchh-hhcccccccchhhcccccCccccchhhhcccccchHHHhhccchhh
Confidence            477999999989999999999999999875543 3344556667779999999999999999999999999999999998


Q ss_pred             ccccccCCCceeecCCchhHHHHHHHHHhhhcCcccccCCCCCCCCCccccccccccccchhhhhhhhhhccccccHHHH
Q 000672          570 LSDEVQASCWQCCCCSPSLLKRLTSELGRAMGSENLIVSSSESDSENSDADNNLKIGGKRKQKKKIRRILDDAELGEETK  649 (1360)
Q Consensus       570 ~~~~~~~~~W~C~~C~p~~l~~L~~~~~~~~~~~~~~~~~s~~~~d~sd~~~~~~~~~~~k~~k~ir~il~d~~l~e~tk  649 (1360)
                      ++ ....-.|.|.+|++.+.+  .+..++.+..+.....++++.++++.+..|+...+|+|+||+||+||+|..|+.+|+
T Consensus       528 mp-qkkkr~~~~~~sds~~e~--kse~E~ee~ekK~~ek~~kk~esseSd~vn~~sksK~K~rKkiRkII~d~kL~keT~  604 (1567)
T KOG1015|consen  528 MP-QKKKRRRIKVQSDSSSEN--KSESEEEEEEKKEEEKEEKKEESSESDNVNDDSKSKGKGRKKIRKIIKDDKLRKETQ  604 (1567)
T ss_pred             hh-hhhhcCceeeecCCcccc--cccccHHHHHHHHHhhhhhcccccccCCcCccccccccchhHHHhhcchhhhchhHH
Confidence            88 444456999999999988  667777777665555544444444433467777889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH---HHHHhhhhhhcccccccCCCCCCccchhhcccccccchhhhhhccCCcccccCcchhhhchH
Q 000672          650 RKIAIEKERQERLKS---LQVQFSSKSKLMNSVTLDGDLSAGASIEVLGDAITGYIVNVVREKGEEAVRIPSSISAKLKA  726 (1360)
Q Consensus       650 ~~~~~ek~r~~rl~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~i~~~~~~~~~~~v~vP~~l~~~Lrp  726 (1360)
                      .++++|++|++||+.   +++.|+.+     .+.....++++..        ..+|+++..++..++++||.+|...|+|
T Consensus       605 ~a~k~EkeRrkRie~~~~rqK~~n~i-----~ied~s~~~e~it--------~~lVld~deet~e~~VqV~rslv~kLKp  671 (1567)
T KOG1015|consen  605 NALKEEKERRKRIEEERERQKLRNVI-----EIEDASPTKEPIT--------TKLVLDEDEETKEPLVQVHRSLVIKLKP  671 (1567)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcee-----eeccCCCCccccc--------eeEEecchhhhccchhhccHhHHhhcCc
Confidence            999999999999998   33333321     1222233333222        2788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcCCCCCcceEEEeCCCchHHHHHHHHHHHHHHhcccCCCceEEEechhhHHHHHHHHHHh
Q 000672          727 HQVVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVNLGLRTALIVTPVNVLHNWKQEFMKW  806 (1360)
Q Consensus       727 hQ~egV~~m~~~~~~sl~r~~~~~~~~GgILADeMGLGKTlqaIAlI~~ll~~~~~~~k~~LIV~P~sLl~QW~~Ei~k~  806 (1360)
                      ||..||+|||+++++++.+. ..++|.||||||+||||||+|+|+|+++++.....+++++|||||.+++.||.+||.+|
T Consensus       672 HQv~GvqFMwd~~~eSlkr~-~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~EFekW  750 (1567)
T KOG1015|consen  672 HQVDGVQFMWDCCCESLKRT-KKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNEFEKW  750 (1567)
T ss_pred             ccccchhHHHHHHHHHHHhh-cCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHHHHHh
Confidence            99999999999999999987 55789999999999999999999999999999989999999999999999999999999


Q ss_pred             CCC--CCCCeEEEEecCcch-hHHHHHHHHHhhcCCEEEEcccccccccccccccchhhHHHH-HhhhcCCCCEEEEeCC
Q 000672          807 RPS--ELKPLRVFMLEDVSR-DRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRNMAREI-CHALQDGPDILVCDEA  882 (1360)
Q Consensus       807 ~p~--~~~~l~V~~~~g~~~-~~r~~~l~~~~~~~~VvItSY~~~r~l~~~~~~~~~~~~~~i-~~ll~~~fdlVIlDEA  882 (1360)
                      .++  ...++.|+.+...++ ..|...+..|+..++|+|++|++||++..+...+.......+ ..++.++||+||||||
T Consensus       751 m~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~  830 (1567)
T KOG1015|consen  751 MEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEG  830 (1567)
T ss_pred             cccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecch
Confidence            985  334788998888776 788899999999999999999999999999888877744444 4555669999999999


Q ss_pred             cccCCcchHHHHHHhhcccceEEEEeCCCCCCchhhHHhhhhhhccCCCCChHHHHhhccCCcccCCCCCCChHHHHHHH
Q 000672          883 HMIKNTRADTTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTSEDVKIMN  962 (1360)
Q Consensus       883 H~IKN~~Sk~skal~~Lka~~RllLTGTPiqNnl~EL~sLL~fL~p~~lgs~~eF~~~f~~pi~~g~~~~st~~~~~~~~  962 (1360)
                      |.|||..|.+++|+..+++++||+|||||+|||+.|||||++|+.|++||+..+|+++|.|||.+|++.+++..++.+|+
T Consensus       831 HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~Mk  910 (1567)
T KOG1015|consen  831 HILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQCADSTMVDVRVMK  910 (1567)
T ss_pred             hhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCccCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHhhhhhhhhhhhcCCCceEEEEEecCCHHHHHHHHHHHHhhcccccc--cchHHHHhhHHHHHHHHHH
Q 000672          963 QRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRRLYKRFLDLHGFTNDR--VSNEKIRKSFFAGYQALAQ 1040 (1360)
Q Consensus       963 ~r~~~L~~~L~~fv~Rrtk~~v~~~LP~k~e~vV~v~LS~~Q~~lYe~ll~~~~~~~~~--~~~~~~~~s~~~~l~~LRq 1040 (1360)
                      +|+|+|+.+|++||+|+++.++.++||||++|+|.|.||+.|..||.+|++ +......  ....+....+|..|+.|++
T Consensus       911 ~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~-h~~~~G~d~eg~~g~~arlf~dfqmlsr  989 (1567)
T KOG1015|consen  911 KRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD-HLTGVGNDSEGGRGAGARLFQDFQMLSR  989 (1567)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh-hccccCCccccccchhhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999 3332222  2233466789999999999


Q ss_pred             HhcCcchhhhccccC----CCCCcc---c--cCCC----------------------Cccccccccccc------CCCcc
Q 000672         1041 IWNHPGILQLTKDKG----YPSRED---A--EDSS----------------------SDENMDYNVVIG------EKPRN 1083 (1360)
Q Consensus      1041 ic~hP~Ll~~~~~~~----~~~~e~---~--~d~~----------------------~de~~~~~~~~~------e~~~~ 1083 (1360)
                      ||+||+.+++.....    +....+   .  ++++                      .|+..+.....+      .+.+.
T Consensus       990 IwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk 1069 (1567)
T KOG1015|consen  990 IWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRK 1069 (1567)
T ss_pred             HhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccccccccccCCchhhhhhhhhh
Confidence            999999988654321    111111   1  1110                      011122211111      11111


Q ss_pred             chhhhc------------------CC----CCCccchhhhhhhhhhhccccccccChhHHHHHHHHHhhhcCCCeEEEEe
Q 000672         1084 MNDFLQ------------------GK----NDDGFFQKDWWNDLLHEHTYKELDYSGKMVLLLDILTMCSNMGDKSLVFS 1141 (1360)
Q Consensus      1084 ~~d~~~------------------~~----~~~~~~~~~~~~~ll~~~~~~~~~~S~Kl~~L~eiL~~~~~~g~KVLIFS 1141 (1360)
                      +..+..                  ..    ......+..||.+++....+..+..|+||.+|++||..+.+.|+|+||||
T Consensus      1070 ~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFS 1149 (1567)
T KOG1015|consen 1070 SRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLVFS 1149 (1567)
T ss_pred             ccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEEee
Confidence            111111                  10    01122456799999999999999999999999999999999999999999


Q ss_pred             CchhhHHHHHHHHhcCCCCCC-----------CcccccCCCcEEEecCCCCHHHHHHHHHHHhCCCCCCceEEEeecccc
Q 000672         1142 QSIPTLDLIEFYLSKLPRPGK-----------QGKLWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAG 1210 (1360)
Q Consensus      1142 Qf~~tLdlLe~~L~~l~~~~~-----------~~~~~~~Gi~~~rLdGsts~~eR~~iI~~Fn~~~n~~v~VlLISTkAG 1210 (1360)
                      |+..+|++|+.+|....+.++           .|. |..|.+|++|||+++..+|++++++||++.|-+.++|||||+||
T Consensus      1150 QSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGk-W~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAG 1228 (1567)
T KOG1015|consen 1150 QSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGK-WLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAG 1228 (1567)
T ss_pred             cccchhHHHHHHHHhhcccCccccccccccccccc-eecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccC
Confidence            999999999999998776654           444 99999999999999999999999999999999999999999999


Q ss_pred             cccCCccCCCEEEEEcCCCChhHHHHHhHhHhhcCCCCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 000672         1211 SLGINLHSANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTIS 1290 (1360)
Q Consensus      1211 geGLNL~~An~VIi~D~~WNPs~~~QAiGRa~RiGQkK~V~VyrLva~gTIEEkI~~rq~~K~~La~~Vvd~~~~~r~ls 1290 (1360)
                      +.||||.+||||||||.+|||+++.|+|+||||+||+||||||||++.||||++||.||++|+.++.+|||.+|+.|||+
T Consensus      1229 sLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv~Rhy~ 1308 (1567)
T KOG1015|consen 1229 SLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQVERHYT 1308 (1567)
T ss_pred             ccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCChhhhhhhhcCCCCCCccccccccCCCCCCCCcchHHHHHHhhhcCcccccc
Q 000672         1291 KEEMLHLFEFGDDENPDPLTAVSKENGQGSSQNTNCALKHKLPLSHEGCSDKLMESLLGKHHPRCAVN 1358 (1360)
Q Consensus      1291 ~~EL~eLf~~~~d~~~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1358 (1360)
                      ..||.+||+|.|+... +-              ..    +.+|   .+|+|+|+|++|+.| ...|+.
T Consensus      1309 ~neLteLy~fep~~dd-p~--------------sE----r~~~---~lpKdrllae~l~~~-q~~i~~ 1353 (1567)
T KOG1015|consen 1309 MNELTELYTFEPDLDD-PN--------------SE----RDTP---MLPKDRLLAELLQIH-QEHIVG 1353 (1567)
T ss_pred             HhhhHHHhhcCCccCC-cc--------------cc----cccc---cCCchhHHHHHHHHH-HHHhhh
Confidence            9999999999986321 10              00    1222   256999999999998 665553

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0383 consensus Predicted helicase [General function prediction only]	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>PF13871 Helicase_C_4: Helicase_C-like	Back alignment and domain information

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]	Back alignment and domain information

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]	Back alignment and domain information

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>smart00249 PHD PHD zinc finger	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>KOG1803 consensus DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>KOG1512 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>KOG4299 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>KOG0957 consensus PHD finger protein [General function prediction only]	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]	Back alignment and domain information

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>PHA02533 17 large terminase protein; Provisional	Back alignment and domain information

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]	Back alignment and domain information

>PRK05707 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]	Back alignment and domain information

>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08769 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>smart00492 HELICc3 helicase superfamily c-terminal domain	Back alignment and domain information

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK14974 cell division protein FtsY; Provisional	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>PTZ00112 origin recognition complex 1 protein; Provisional	Back alignment and domain information

>smart00491 HELICc2 helicase superfamily c-terminal domain	Back alignment and domain information

>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA	Back alignment and domain information

>PRK07994 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK07764 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14087 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed	Back alignment and domain information

>KOG3612 consensus PHD Zn-finger protein [General function prediction only]	Back alignment and domain information

>PRK13889 conjugal transfer relaxase TraA; Provisional	Back alignment and domain information

>KOG0954 consensus PHD finger protein [General function prediction only]	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein	Back alignment and domain information

>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1360
1z3i_X		644	Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA		4e-67
3mwy_W		800	Crystal Structure Of The Chromodomain-atpase Portio		1e-44
1z6a_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN		2e-24
1z6a_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN		1e-16
1z63_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM		3e-23
1z63_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM		1e-15
1z5z_A		271	Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal		5e-17
3ql9_A		129	Monoclinic Complex Structure Of Atrx Add Bound To H		6e-09
2ld1_A		142	Structures And Chemical Shift Assignments For The A		2e-04
2jm1_A		141	Structures And Chemical Shift Assignments For The A		2e-04
3a1a_A		144	Crystal Structure Of The Dnmt3a Add Domain Length =		7e-04

>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644