Citrus Sinensis ID: 000686

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350-

MSKKGQSEQPPPLPPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPERSSFVFKDPSQEWGIEKTKQELRELMKKSERKKRWAAISSVETIQESIKAAVKRVDEIKNQLARLRDSPEEEEMEPKLEERRKKQFADKFMVNLEKGNVAKSFWNNELSAEQKRSLFRVKIEDLKKHLTNRKEKDLLSEAIEFAKAHRSWKFWECCDCSEKYGDWQSYMQHLCDFHDLRIHQDLASIHPKIVDEDSREMIFNGEWKPVDTEEAIKILENQSKSESYNTDDSYMRAEKGQGEYKGCSDEDVLLTKQLGSESDKEASSIAPTDWPLSDDNKRIALLESLHGTFQFLLRYSFLIQVEIDEVIKYAVAMLKTRFSDSHLRNLGPETLKLVCFLESSQLNSIIHKLQHVAGTLSENTGIGNSTDEQLTGAKTFDIKEDVALNDNSSYLILDGVLSYDTHIVSWLYLGHEVGEAIKLWARLRESNRGQRVKLFESFKMERSKFVKMYEERRKLSKKWDALEAVNGIFADEKKRRDENPEYVWRTFESLLRERLKELEERIDAAAAAYQFELEFILNVLETDRAVAAFQFENTSRVHENWNQSDEYVGEKILSWTNQLGNDIWLENVRIITSIVSMKLFNLQLGEISAYEYQLILLPMFRSLVKSRLERHIDEEAVKKLNEIQKGLEEPDNKGQTQGKSKNKKNKNKNKKRKDQREAKDFGVTRDIEQPLETGDTEQPSETGDMEQPSATRDIEQPSETGDIKQPSLPQEKAVQIVDDMQQLIATENAEKKSNEKEKSLEETDSKGQTRGKSKNKKNKNKKRKYQGEHADFCATGDIERPLETGDIEQPSGTGDIQQTSETGDIEQPSLPQEKAVQNDNPNSEKDERADDLQQSITTDEKLREENVKYQLQSEHEARLNVNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKNRGEAVDPTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGLGEQMTCGCGQLNSIYHSLWRLPHVFVSVIDWQRGDESSEDISTTLSALSNELDLSKLFQGYLPDYTYFVVSMVCFCKDRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDHDGSRLAIWRCLAIICVFF

ccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHcccEEEEHHHHHHHHcccHHHHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHccccccHHHccccccccHHHHHHHHccccccccHHHHHHHHHHHcccccccccHHHHHHHcccccccccccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEcccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHccEEEEEEEccccccccccccccEEEEcccccHHHHHHHHHccccHHHHHHHHccccccccccccccEEEEEccccccEEEEEEEEccccccccHHHHHHccccccccccccccccccccEEEEEEEEEEEcccccEEEEEEEccccccEEEEEcccccccccHHHHHHHccccccccEEEEEEEcccccccccccHHHHHHHHHHEEEcc

ccHcccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccEEcHHHHHccccccHHcHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHEEcHHHHHHHHHccccHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHHHHHHccccccHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHccccccEEEEccHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEcccccEEEEcccccccccEEHHHccccccccEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHEHEEEEEEccccccccccccccEEEEEEHHHHHHHHHHHHcccHHHHHHHHHccccccccccHHHHHEEEHcccccEEEEEEEEccccccHHHHHHHHHHccccccccccEcccccccEEEEEEEEEEEccccEEEEEEEEEccccEEEEEccccEEEEEcccEEEcccccHccHcHEEEHHHHHHHcccccHHHHHHHHHHHHHHHHc

mskkgqseqppplppfdttaeGRAAIAAYDEGDYVGALKCiknsesryrkcpfyqHAKAFILYKIALqnndhdggtvRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNralgienpmeperssfvfkdpsqewgiEKTKQELRELMKKSERKKRWAAISSVETIQESIKAAVKRVDEIKNQLArlrdspeeeemePKLEERRKKQFADKFMVNLEKGNVAKSFWNNELSAEQKRSLFRVKIEDLKKHLTNRKEKDLLSEAIEFAKAHrswkfweccdcsekygdwQSYMQHLCdfhdlrihqdlasihpkivdedsremifngewkpvdTEEAIKILENqsksesyntddsymraekgqgeykgcsdedVLLTkqlgsesdkeassiaptdwplsddnKRIALLESLHGTFQFLLRYSFLIQVEIDEVIKYAVAMLKTrfsdshlrnlgpETLKLVCFLESSQLNSIIHKLQHVAgtlsentgignstdeqltgaktfdikedvalndnssylildgvlsydTHIVSWLYLGHEVGEAIKLWARLRESNRGQRVKLFESFKMERSKFVKMYEERRKLSKKWDALEAVNGifadekkrrdenpeYVWRTFESLLRERLKELEERIDAAAAAYQFELEFILNVLETDRAVAAFQFentsrvhenwnqsdEYVGEKILSWTNQLGNDIWLENVRIITSIVSMKLFNLQLGEISAYEYQLILLPMFRSLVKSRLERHIDEEAVKKLNEIQKgleepdnkgqtqgksknkknknknkkrkdqreakdfgvtrdieqpletgdteqpsetgdmeqpsatrdieqpsetgdikqpslpqekAVQIVDDMQQLIATENAekksnekeksleetdskgqtrgksknkknknkkrkyqgehadfcatgdierpletgdieqpsgtgdiqqtsetgdieqpslpqekavqndnpnsekderaDDLQQSITTDEKLREENVKYQLQSEHEARLNVNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEvqkhdgnpcivCAFFDICaaknrgeavdpteLRIALSTYYCnqnnfqegqvnDAYLFLLVIFKVLHVAFYavnsddkpedmykdrlhcvdsnclvhrIFGMDIFESIECInchmrsgyqkctylsfgisannLRSLKNEHMDMSSKKVLELMglgeqmtcgcgqlnsiyhslwrlPHVFVSVIdwqrgdesseDISTTLSALSNELDLSKLfqgylpdyTYFVVSMVCfckdrqhsvcflyddqhdehyvqhsdsnveaySEVNilatddnhsETLDMMISFQRLIglkqdhdgsrLAIWRCLAIICVFF

mskkgqseqppplppfdTTAEGRAAIAAYDEGDYVGALKCIKnsesryrkcPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALgienpmeperssfvfkdpsqewgiekTKQELRELMKkserkkrwaaissvetiqESIKAAVKRVDEIKnqlarlrdspeeeemepkleerrkkqFADKFMVNLEKGNVAKSFWNNELSAEQKRSLFRVKIEDLKkhltnrkekdlLSEAIEFAkahrswkfwECCDCSEKYGDWQSYMQHLCDFHDLRIHQDLASIHPKIVDEDSREMIFngewkpvdtEEAIKILenqsksesyntddsymRAEKGqgeykgcsdEDVLLTKQlgsesdkeassiaptdwplsdDNKRIALLESLHGTFQFLLRYSFLIQVEIDEVIKYAVAMLKTRFSDSHLRNLGPETLKLVCFLESSQLNSIIHKLQHVAGTLSENTGIGNSTDEQLTGAKTFDIKEDVALNDNSSYLILDGVLSYDTHIVSWLYLGHEVGEAIKLWARLresnrgqrvklfesfkmerskfVKMYEErrklskkwdaleavngifadekkrrdenpeyvWRTFESLLRERLKELEERIDAAAAAYQFELEFILNVLETDRAVAAFQFentsrvhenwnQSDEYVGEKILSWTNQLGNDIWLENVRIITSIVSMKLFNLQLGEISAYEYQLILLPMFRSLVKSRLERHIDEEAVKKLNeiqkgleepdnkgqtqgksknkknknknkkrkdqreakdfgvtrdieqpletgdteqpsetgdmeqpsatRDIEQpsetgdikqpslpQEKAVQIVDDMQQLIATenaekksnekeksleetdskgqtrgksknkknknkkrkyqgehadfcatgdiERPLETGDIEQPSGTGDIQQtsetgdieqpslpqekavqndnpnsekderaddlqqsittdeklrEENVKYqlqsehearlNVNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKNRGEAVDPTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGLGEQMTCGCGQLNSIYHSLWRLPHVFVSVIDWQRGDESSEDISTTLSALSNELDLSKLFQGYLPDYTYFVVSMVCFCKDRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDHDGSRLAIWRCLAIICVFF

MSKKGQSEQPPPLPPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEaamsalqasfllsssTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPERSSFVFKDPSQEWGIEKTKQELRELMKKSERKKRWAAISSVETIQESIKAAVKRVDEIKNQLARLRDSpeeeemepkleerrkkQFADKFMVNLEKGNVAKSFWNNELSAEQKRSLFRVKIEDLKKHLTNRKEKDLLSEAIEFAKAHRSWKFWECCDCSEKYGDWQSYMQHLCDFHDLRIHQDLASIHPKIVDEDSREMIFNGEWKPVDTEEAIKILENQSKSESYNTDDSYMRAEKGQGEYKGCSDEDVLLTKQLGSESDKEASSIAPTDWPLSDDNKRIALLESLHGTFQFLLRYSFLIQVEIDEVIKYAVAMLKTRFSDSHLRNLGPETLKLVCFLESSQLNSIIHKLQHVAGTLSENTGIGNSTDEQLTGAKTFDIKEDVALNDNSSYLILDGVLSYDTHIVSWLYLGHEVGEAIKLWARLRESNRGQRVKLFESFKMERSKFVKMYEERRKLSKKWDALEAVNGIFADEKKRRDENPEYVWRTFESllrerlkeleerIDAAAAAYQFELEFILNVLETDRAVAAFQFENTSRVHENWNQSDEYVGEKILSWTNQLGNDIWLENVRIITSIVSMKLFNLQLGEISAYEYQLILLPMFRSLVKSRLERHIDEEAVKKLNEIQKGLEEPDNKGQTQGksknkknknknkkrkDQREAKDFGVTRDIEQPLETGDTEQPSETGDMEQPSATRDIEQPSETGDIKQPSLPQEKAVQIVDDMQQLIatenaekksnekeksleetDSKGQTRGksknkknknkkrkYQGEHADFCATGDIERPLETGDIEQPSGTGDIQQTSETGDIEQPSLPQEKAVQNDNPNSEKDERADDLQQSITTDEKLREENVKYQLQSEHEARLNVNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKNRGEAVDPTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGLGEQMTCGCGQLNSIYHSLWRLPHVFVSVIDWQRGDESSEDISTTLSALSNELDLSKLFQGYLPDYTYFVVSMVCFCKDRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDHDGSRLAIWRCLAIICVFF

***********************AAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGI***********************************************************************************************KFMVNLEKGNVAKSFWNNELSA***RSLFRVKIEDLKKHLTNRKEKDLLSEAIEFAKAHRSWKFWECCDCSEKYGDWQSYMQHLCDFHDLRIHQDLASIHPKIVDEDSREMIFNGEWKPVDT***I***************************************************************NKRIALLESLHGTFQFLLRYSFLIQVEIDEVIKYAVAMLKTRFSDSHLRNLGPETLKLVCFLESSQLNSIIHKLQHVAGTLSENTGI*******LTGAKTFDIKEDVALNDNSSYLILDGVLSYDTHIVSWLYLGHEVGEAIKLWARLRESNRGQRVKLFESFKMERSKFVKMYEERRKLSKKWDALEAVNGIFAD********PEYVWRTFESLLRERLKELEERIDAAAAAYQFELEFILNVLETDRAVAAFQFENTSRVHENWNQSDEYVGEKILSWTNQLGNDIWLENVRIITSIVSMKLFNLQLGEISAYEYQLILLPMFRSLVKSRLER******************************************************************************************************************************************************************************************************************************************************ARLNVNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKNRGEAVDPTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQKCTYLSFGISANNLRS***********KVLELMGLGEQMTCGCGQLNSIYHSLWRLPHVFVSVIDWQRG**********LSALSNELDLSKLFQGYLPDYTYFVVSMVCFCKDRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDHDGSRLAIWRCLAIICVF*

********************EGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPERSSF**************KQELRELMKKSERKKRWAA****E****************************************************EKGNVAKSFWNNELSAEQKRSLFRVKIEDLKKHLTNRKEKDLLSEAIEFAKAHRSWKFWECCDCSEKYGDWQSYMQHLCDFHD**************VDEDSREMIFNGEWKPVDTEEAIKILENQSKSESYNTDDSYMRAEKGQGEYKGCSDEDVL****LGSESDKEASSIAPTDWPLSDDNKRIALLESLHGTFQFLLRYSFLIQVEIDEVIKYAVAMLKTRFSDSHLRNLGPETLKLVCFLESSQLNSIIHKLQHVAGTLSENTGIGNSTDEQLTGAKTFDIKEDVALNDNSSYLILDGVLSYDTHIVSWLYLGHEVGEAIKLWARLRESNRGQRVKLFESFKMERSKFVKMYEERRKLSKKWDALEAVNGIFADEKK**********RTFESLLRERLKELEERIDAAAAAYQFELEFILNVLETDRAVAAFQFENTSRVHENWNQSDEYVGEKILSWTNQLGNDIWLENVRIITSIVSMKLFNLQLGEISAYEYQLILLPMFRS*******************************************************************************************************************************************************************************************************************************************TDEKLREENVKYQLQSEHEARLNVNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDE**KHDGNPCIVCAFFDICAAKNRGEAVDPTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHV*********************VDSNCLVHRIFGMDIFESIECINCHMRSGYQKCTYLSFGISANNLRSLKNEHM*MSSKKVLELMGLGEQMTCGCGQLNSIYHSLWRLPHVFVSVIDWQR******DISTTLSALSNELDLSKLFQGYLPDYTYFVVSMVCFCKDRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDHDGSRLAIWRCLAIICVFF

*************PPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPERSSFVFKDPSQEWGIEKTKQELREL************ISSVETIQESIKAAVKRVDEIKNQLARL***************RRKKQFADKFMVNLEKGNVAKSFWNNELSAEQKRSLFRVKIEDLKKHLTNRKEKDLLSEAIEFAKAHRSWKFWECCDCSEKYGDWQSYMQHLCDFHDLRIHQDLASIHPKIVDEDSREMIFNGEWKPVDTEEAIKILENQSKSESYNTDDSYMRAEKGQGEYKGCSDEDVLLTKQL*************TDWPLSDDNKRIALLESLHGTFQFLLRYSFLIQVEIDEVIKYAVAMLKTRFSDSHLRNLGPETLKLVCFLESSQLNSIIHKLQHVAGTLSENTGIGNSTDEQLTGAKTFDIKEDVALNDNSSYLILDGVLSYDTHIVSWLYLGHEVGEAIKLWARLRESNRGQRVKLFESFKMERSKFVKMYEERRKLSKKWDALEAVNGIFADEKKRRDENPEYVWRTFESLLRERLKELEERIDAAAAAYQFELEFILNVLETDRAVAAFQFENTSRVHENWNQSDEYVGEKILSWTNQLGNDIWLENVRIITSIVSMKLFNLQLGEISAYEYQLILLPMFRSLVKSRLERHIDEEAVKKLNEIQKGLEE*****************************KDFGVTRDIEQPLE*********************************PSLPQEKAVQIVDDMQQLIATENA*************************************GEHADFCATGDIERPLETGDIEQPSGTGDIQQTSETGDIEQPSL*********************LQQSITTDEKLREENVKYQLQSEHEARLNVNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKNRGEAVDPTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGLGEQMTCGCGQLNSIYHSLWRLPHVFVSVIDWQR*********TTLSALSNELDLSKLFQGYLPDYTYFVVSMVCFCKDRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDHDGSRLAIWRCLAIICVFF

*************PPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPERSSFVFKDPSQEWGIEKTKQELRELMKKSERKKRWAAISSVETI*************IKNQLARLRDS*************************LEKGNVAKSFWNNELSAEQKRSLFRVKIEDLKKHLTNRKEKDLLSEAIEFAKAHRSWKFWECCDCSEKYGDWQSYMQHLCDFHDLRIHQDLASIHPKIVDEDSREMIFNGEWKPVDTEEAIKILENQSKSE*****DSYMRAEKGQGEYKGCSDEDVL*************SSIAPTDWPLSDDNKRIALLESLHGTFQFLLRYSFLIQVEIDEVIKYAVAMLKTRFSDSHLRNLGPETLKLVCFLESSQLNSIIHKLQHVAGTLSENTGIGNSTDEQLTGAKTFDIKEDVALNDNSSYLILDGVLSYDTHIVSWLYLGHEVGEAIKLWARLRESNRGQRVKLFESFKMERSKFVKMYEERRKLSKKWDALEAVNGIFADEKKRRDENPEYVWRTFESLLRERLKELEERIDAAAAAYQFELEFILNVLETDRAVAAFQFENTSRVHENWNQSDEYVGEKILSWTNQLGNDIWLENVRIITSIVSMKLFNLQLGEISAYEYQLILLPMFRSLVKSRLERHIDEEAVKKLNEIQKGLEEPD*********************************************************************GDIKQPSLPQEKAVQIVDDMQQLIATENAEKK****************************************************************************************************************************ARLNVNVLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKNRGEAVDPTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAV*********YKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGLGEQMTCGCGQLNSIYHSLWRLPHVFVSVIDWQRGDESSEDISTTLSALSNELDLSKLFQGYLPDYTYFVVSMVCFCKDRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDHDGSRLAIWRCLAIICVFF

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSKKGQSEQPPPLPPFDTTAEGRAAIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEAAMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPERSSFVFKDPSQEWGIEKTKQELRELMKKSERKKRWAAISSxxxxxxxxxxxxxxxxxxxxxxxxxxxxPEEEEMEPKLEERRKKQFADKFMVNLEKGNVAKSFWNNELSAEQKRSLFRVKIEDLKKHLTNRKEKDLLSEAIEFAKAHRSWKFWECCDCSEKYGDWQSYMQHLCDFHDLRIHQDLASIHPKIVDEDSREMIFNGEWKPVDTEEAIKILENQSKSESYNTDDSYMRAEKGQGEYKGCSDEDVLLTKQLGSESDKEASSIAPTDWPLSDDNKRIALLESLHGTFQFLLRYSFLIQVEIDEVIKYAVAMLKTRFSDSHLRNLGPETLKLVCFLESSQLNSIIHKLQHVAGTLSENTGIGNSTDEQLTGAKTFDIKEDVALNDNSSYLILDGVLSYDTHIVSWLYLGHEVGEAIKLWARLRESNRGQRVKLFESFKMERSKFVKMYEERRKLSKKWDALEAVNGIFADEKKRRDENPEYVWRTFxxxxxxxxxxxxxxxxxxxxxYQFELEFILNVLETDRAVAAFQFENTSRVHENWNQSDEYVGEKILSWTNQLGNDIWLENVRIITSIVSMKLFNLQLGEISAYEYQLILLPMFRSLVKSRLERHIDEEAVKKLNEIQKGLEEPDNKGQTQGKSKNKKNKNKNKKRKDQREAKDFGVTRDIEQPLETGDTEQPSETGDMEQPSATRDIEQPSETGDIKQPSLPQEKAVQIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGQTRGKSKNKKNKNKKRKYQGEHADFCATGDIERPLETGDIEQPSGTGDIQQTSETGDIEQPSLPQEKAVQNDNPNSEKDERADDLQQSITTDEKLREENVKYQLQSEHEARLNVNVLGTGLGKEAANNFLYMIIQSLWNxxxxxxxxxxxxxxxxxxxxxPCIVCAFFDICAAKNRGEAVDPTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGLGEQMTCGCGQLNSIYHSLWRLPHVFVSVIDWQRGDESSEDISTTLSALSNELDLSKLFQGYLPDYTYFVVSMVCFCKDRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNILATDDNHSETLDMMISFQRLIGLKQDHDGSRLAIWRCLAIICVFF

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1351	2.2.26 [Sep-21-2011]
P15975		1069	Inactive ubiquitin carbox	yes	no	0.194	0.246	0.244	2e-09
Q70EK8		1073	Inactive ubiquitin carbox	yes	no	0.203	0.256	0.245	1e-08
Q8BL06		1588	Inactive ubiquitin carbox	no	no	0.178	0.151	0.252	2e-08
Q70EL1		1684	Inactive ubiquitin carbox	no	no	0.176	0.141	0.250	2e-08
Q6IE24		1588	Inactive ubiquitin carbox	yes	no	0.176	0.150	0.257	2e-08

>sp\|P15975\|UBP53_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Mus musculus GN=Usp53 PE=2 SV=2	Back alignment and function desciption

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 117/307 (38%), Gaps = 44/307 (14%)

Query: 1008 GLGKEAANN--FLYMIIQSLWNLREFQEECKKKLDEVQKH--DGNPCIVCAFFDICAA-- 1061
            GL  E   N  FL   +Q LW L  F    ++ L  +  H   G+ CI CA   I A   
Sbjct: 31   GLLNEPGQNSCFLNSAVQVLWQLDIF----RRSLRALTGHICQGDACIFCALKTIFAQFQ 86

Query: 1062 KNRGEAVDPTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPED 1121
             +R +A+    +R AL+  + ++  FQ G ++DA      I   +H  F+ V + D   D
Sbjct: 87   HSREKALPSDNIRHALAESFKDEQRFQLGLMDDAAECFENILARIH--FHLVPNRDA--D 142

Query: 1122 MYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSGYQKCT----YLSFGISANNLRSL 1177
            M      C   +C+ H+ F M ++E   C +C   S     T    Y+S     N +  +
Sbjct: 143  M------CTSKSCVTHQKFAMTLYEQCVCRSCGASSDPLPFTELVRYISTTALCNEVERM 196

Query: 1178 KNEHMDMSSKKVLELMGLG------EQMTCGCGQLNSIYHSLWRLPHVFVSVIDWQRGDE 1231
               H  +  +   EL+          +    CGQ   I   L   P +    + W    E
Sbjct: 197  MERHERVKPEMFAELLQAANTADDYRKCPSNCGQKIKIRRVLMNCPEIVTIGLVWD--SE 254

Query: 1232 SSEDISTTLSALSNELDLSKLFQGYL----PDYTYFVVSMVCFCKDRQHSVCF------- 1280
             S+     + +L+  L L  LF         D    +V M+C+      +  F       
Sbjct: 255  HSDLTEDVVRSLATHLYLPGLFYRVTDENATDSELHLVGMICYTSRHYCAFAFHTKSSKW 314

Query: 1281 -LYDDQH 1286
              +DD H
Sbjct: 315  VFFDDAH 321

Has no peptidase activity.
Mus musculus (taxid: 10090)

>sp\|Q70EK8\|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens GN=USP53 PE=2 SV=2	Back alignment and function description

>sp\|Q8BL06\|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus GN=Usp54 PE=1 SV=2	Back alignment and function description

>sp\|Q70EL1\|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens GN=USP54 PE=1 SV=4	Back alignment and function description

>sp\|Q6IE24\|UBP54_RAT Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Rattus norvegicus GN=Usp54 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1351
224119144		1181	predicted protein [Populus trichocarpa]	0.574	0.657	0.270	2e-71
297734043		1552	unnamed protein product [Vitis vinifera]	0.536	0.467	0.279	6e-71
297819402		1635	predicted protein [Arabidopsis lyrata su	0.571	0.472	0.263	2e-68
297819400		1571	hypothetical protein ARALYDRAFT_485153 [	0.572	0.492	0.262	3e-68
4678339		1528	putative protein [Arabidopsis thaliana]	0.570	0.504	0.261	7e-68
186510760		1568	Ubiquitin carboxyl-terminal hydrolase-re	0.570	0.491	0.261	7e-68
225456629		1653	PREDICTED: uncharacterized protein LOC10	0.538	0.439	0.263	5e-67
449441049		1594	PREDICTED: uncharacterized protein LOC10	0.557	0.472	0.261	5e-66
356565061		1611	PREDICTED: uncharacterized protein LOC10	0.572	0.480	0.256	3e-65
186510762		1606	Ubiquitin carboxyl-terminal hydrolase-re	0.569	0.478	0.254	3e-65

>gi\|224119144\|ref\|XP_002317996.1\| predicted protein [Populus trichocarpa] gi\|222858669\|gb\|EEE96216.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  277 bits (709), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 252/930 (27%), Positives = 445/930 (47%), Gaps = 154/930 (16%)

Query: 25  AIAAYDEGDYVGALKCIKNSESRYRKCPFYQHAKAFILYKIALQNNDHDGGTVRNYIEEA 84
           A+ A   G++  AL+ +K+S +++          + +  K+A   +D +  + + Y++ A
Sbjct: 56  ALNALRRGNHTKALRIMKDSCAKHGGDALIHRVHSTVCVKVASIIDDTN--SKQRYLKNA 113

Query: 85  AMSALQASFLLSSSTIIAYFCACALYDLASFNREYYKVIRECNRALGIENPMEPERSSFV 144
             +A +A+ L  +S   A+F A  LY+ A+  +EY +V++EC+RAL IENP++P + S  
Sbjct: 114 IEAARRAAELSPNSIEFAHFYANLLYEAANDGKEYEEVMKECDRALKIENPIDPAKESLQ 173

Query: 145 ----FKDPSQEWGIEKTKQELRELMKKSERKKRWAAISSVETIQE--------------- 185
                K  + E  I   + EL+ L +KS        + ++ T +E               
Sbjct: 174 EESQQKIATAEGRIAHVQGELKNLQQKSNIASISTWMKNLGTGEEIRLIPIRRATEDPME 233

Query: 186 ----------SIKAAVKRVDEIKNQL------ARLRDSPE-------------EEEMEP- 215
                      IK A K  +E + ++      ARL    E               E+ P 
Sbjct: 234 VRLVQTRRPNEIKKATKTQEEKRKEIEVRVAAARLLQKSEIGLGQREGERSDKGVEVTPW 293

Query: 216 ---KLEERRKKQFADKFMVNLEKGNVAKSFWNNELSAEQKRSLFRVKIEDLKKHLTNRKE 272
              + E R+    A K   N E+ +  +S+WN+ +S E KR L ++K+ DLK +  + K 
Sbjct: 294 SDRRGERRKNGSNARKNGTNTERKDWVRSYWNS-MSLEMKRELLKIKVSDLKSYFVSSKN 352

Query: 273 ---KDLLSEAIEFAKAHRSWKFWECCDCSEKYGDWQSYMQHLCDFHDLRIHQDLASIHPK 329
               D+L+EA+  ++ ++SW+FW CC C+EK+ D  S++ H+   H   +   +  + P+
Sbjct: 353 GLASDVLNEALACSEENKSWRFWVCCRCNEKFADSDSHLHHVVQEHMRSLMPKMQEVLPQ 412

Query: 330 IVDEDSREMIFNGEWKPVDTEEAIKILENQSK-----------SESYNTD------DSYM 372
             D +  EMI +  WKP+D   A+K+L N+ K           SE++N D      D++ 
Sbjct: 413 SPDNEWIEMINSCSWKPLDISSAVKMLWNRGKCQNGELVEDICSENHNEDGDGCFKDAWD 472

Query: 373 RAEKGQGEYKGC------SDEDVLLTKQLGSESDKEASSIAPT--DWPLSDDNKRIALLE 424
            + + +    GC      S     +    G E D    SIA T   WP+S+D++R  LLE
Sbjct: 473 SSPEKENLRDGCISCPVSSSNSGKVYSIEGKEFDGNQLSIACTIESWPISEDSERAKLLE 532

Query: 425 SLHGTFQFLLRYSFLIQVEIDEVIKYAVAMLKTRFSDSHLRNLG-PETLKLVCFLESSQL 483
            +H  FQ L+R+ +L    +++VI++ V  L++  + S L N G  +T   +CFL + QL
Sbjct: 533 KIHDVFQALIRHKYLAASHLNKVIQFTVDELQSLATGSQLLNHGVGQTPMCICFLGAFQL 592

Query: 484 NSIIHKLQHVAGTLSENTGIGNS------TDEQLTGAKTFDIKEDVALNDNSSYLIL--- 534
             I+  LQ     LS + G+G S       D+  TGAK  +IKE++ LND++S L L   
Sbjct: 593 KKILKFLQE----LSHSCGLGMSPEKSSVVDDMNTGAKGPEIKENIVLNDDASCLYLDKC 648

Query: 535 ---------------------------DGVLSYDTHIVSWLYLGHEVGEAIKLWARLRES 567
                                      DGVL     ++SW++ G   GE ++ W R +E 
Sbjct: 649 LLPLEYAPRTCPDDDVTTATSTIVGNGDGVLPAVDTLLSWIFAGLSSGEQLQSWIRTKEE 708

Query: 568 NRGQRVKLFESFKMERSKFVKMYEERRKLSKKWDALEAVNGIFADEKKRRDENPEYVWRT 627
              Q +++ ++ + E      +YE + +      AL+AV  +  +E K+R+ +  +  R+
Sbjct: 709 RMNQGMEILQTLEKEFYHLQSLYERKCEHLSYEQALQAVEDLCLEEGKKRETDTLFELRS 768

Query: 628 FESLLRERLKEL-EERIDAAAAAYQFELEFILNVL-ETDRA-VAAFQFENT--------- 675
           ++S+LR+R ++L E   DA   + +FEL+ I NVL E D   V  + +E+T         
Sbjct: 769 YDSVLRQRREKLVENEHDALFFSSRFELDAISNVLKEADTLNVNQYGYEDTYGGITSQFC 828

Query: 676 ---SRVHENWNQSDE------YVGEKILSWTNQLGNDIWLE----NVRIITSIVSMKLFN 722
              S    NW   D+      ++   I     QL  ++ ++    + +I+  +  M+   
Sbjct: 829 DLKSGEDGNWRTKDQMHQVETFIEIAIQRQKEQLSIEVMVQLSKIDAQIMRIVTGMQQLE 888

Query: 723 LQLGEISAYEYQLILLPMFRSLVKSRLERHIDEEAVKKLNEIQKGLEEP---DNKGQTQG 779
           L+L  +SA +Y+ IL P+ +S +++ LE   +++A +K N   +        D+K  TQG
Sbjct: 889 LKLESVSALDYRSILPPLVKSYMRAHLEDLAEKDATEKSNAAGEAFLAELALDSKKGTQG 948

Query: 780 KSKNKKNKNKNKKRKDQREAKDFGVTRDIE 809
           +S    ++N  +K KD+R+ K++  T++++
Sbjct: 949 RS--DISRNTLEKGKDRRKNKEYKKTKELK 976

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297734043\|emb\|CBI15290.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297819402\|ref\|XP_002877584.1\| predicted protein [Arabidopsis lyrata subsp. lyrata] gi\|297323422\|gb\|EFH53843.1\| predicted protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|297819400\|ref\|XP_002877583.1\| hypothetical protein ARALYDRAFT_485153 [Arabidopsis lyrata subsp. lyrata] gi\|297323421\|gb\|EFH53842.1\| hypothetical protein ARALYDRAFT_485153 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|4678339\|emb\|CAB41150.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|186510760\|ref\|NP_190372.3\| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana] gi\|332644822\|gb\|AEE78343.1\| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|225456629\|ref\|XP_002266656.1\| PREDICTED: uncharacterized protein LOC100256959 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449441049\|ref\|XP_004138296.1\| PREDICTED: uncharacterized protein LOC101212702 [Cucumis sativus] gi\|449477596\|ref\|XP_004155067.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229576 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356565061\|ref\|XP_003550763.1\| PREDICTED: uncharacterized protein LOC100800030 [Glycine max]	Back alignment and taxonomy information

>gi\|186510762\|ref\|NP_190374.4\| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana] gi\|332644823\|gb\|AEE78344.1\| Ubiquitin carboxyl-terminal hydrolase-related protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1351
TAIR\|locus:2097935		1568	AT3G47890 [Arabidopsis thalian	0.279	0.240	0.336	3.6e-111
TAIR\|locus:2097835		1607	AT3G47910 [Arabidopsis thalian	0.230	0.193	0.371	2.3e-108
TAIR\|locus:2200355		1094	AT1G65110 [Arabidopsis thalian	0.230	0.284	0.252	4.7e-32
TAIR\|locus:2200360		1147	AT1G65120 [Arabidopsis thalian	0.111	0.130	0.297	5.4e-32
TAIR\|locus:2042016		1106	AT2G27650 [Arabidopsis thalian	0.113	0.139	0.280	1.4e-28
TAIR\|locus:2042072		1122	AT2G27630 [Arabidopsis thalian	0.114	0.138	0.289	3.5e-28
TAIR\|locus:2018139		1136	AT1G52430 [Arabidopsis thalian	0.111	0.132	0.312	2e-24
TAIR\|locus:2153157		1149	AT5G51530 [Arabidopsis thalian	0.113	0.134	0.309	4.9e-24
TAIR\|locus:2035104		1136	AT1G52450 [Arabidopsis thalian	0.111	0.132	0.312	1.6e-23
TAIR\|locus:2200350		1101	AT1G65200 [Arabidopsis thalian	0.108	0.132	0.287	2.6e-23

TAIR\|locus:2097935 AT3G47890 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 540 (195.1 bits), Expect = 3.6e-111, Sum P(5) = 3.6e-111
 Identities = 134/398 (33%), Positives = 207/398 (52%)

Query:   918 DIERPLETGDIEQPSGTGDIQQTSETGDIEQPSLPQEKAVQNDNPNSEKDERADDLQQSI 977
             D ER  ET      +G   ++Q     D E+      K  +  + +  +  R  ++   +
Sbjct:  1148 DSERQSETLRSNGDAGPKTLRQLQAEDDEEERFQADLKRAKLQSLDVYRGRR--NMTSCL 1205

Query:   978 TTDEKLREENVKYQLQSEHEARLNVNVLGTGLGKEAA--NNFLYMIIQSLWNLREFQEEC 1035
              T  +   + V   +  E ++   V + GTGL  E    N FL +IIQSLWNL  F+ E 
Sbjct:  1206 RTSLEDNNDWVLSDVTKESQSSPGVAIFGTGLQNEVGEYNCFLNVIIQSLWNLGMFRAEF 1265

Query:  1036 KKKLDEVQKHDGNPCIVCAFFDICAA------KNRGEAVDPTELRIALSTYYCNQNNFQE 1089
              +       H G+PC+VC+ + I  A      + R E V P+ LRIALS  Y + + FQE
Sbjct:  1266 LRSSTLEHHHFGDPCVVCSLYAIFTALSTASSETRKEPVAPSSLRIALSNLYPDSSFFQE 1325

Query:  1090 GQVNDAYLFLLVIFKVLHVAFY---AVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFE 1146
              Q+NDA   L VIF  LH +F    +V+  +  E        C + +C+ H +FGMD+ E
Sbjct:  1326 AQMNDASEVLAVIFDCLHRSFAQSSSVSDTESAESNSTGSWDCANRSCIAHSLFGMDVSE 1385

Query:  1147 SIECINCHMRSGYQKCTYLSFGISANNLRSLKNEHMDMSSKKVLELMGLGEQMTC----- 1201
              + C +C + S + K T     I+A+ LR++K    + S  ++L L+ +  Q+ C     
Sbjct:  1386 QLNCYSCGLESRHLKYTSFFHNINASALRTMKVTCAENSFDELLNLVEMNHQLACDREAG 1445

Query:  1202 GCGQLNSIYHSLWRLPHVFVSVIDWQRGDESSEDISTTLSALSNELDLSKLFQGYLPDYT 1261
             GCG+ N I+H L   PHVF  V+ WQ   E+ EDI+ TL+AL+ E+D+S +++G  P  T
Sbjct:  1446 GCGKRNHIHHILTTPPHVFTIVLGWQNTCETVEDIAATLAALNTEIDISIMYRGVDPKNT 1505

Query:  1262 YFVVSMVCFCKDRQHSVCFLYDDQHDEHYVQHSDSNVE 1299
             Y +VS+VC+    QH  CF Y  +HD+ ++ + D NV+
Sbjct:  1506 YSLVSVVCYYG--QHYHCFAYSHEHDQ-WIMYDDQNVK 1540

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

TAIR\|locus:2097835 AT3G47910 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2200355 AT1G65110 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2200360 AT1G65120 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2042016 AT2G27650 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2042072 AT2G27630 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2018139 AT1G52430 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2153157 AT5G51530 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2035104 AT1G52450 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2200350 AT1G65200 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XII000712	hypothetical protein (1181 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1351
pfam04780		463	pfam04780, DUF629, Protein of unknown function (DU	6e-44
pfam00443		313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	5e-14
cd02257		255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	3e-05
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	6e-04

>gnl\|CDD\|203088 pfam04780, DUF629, Protein of unknown function (DUF629)	Back alignment and domain information

 Score =  166 bits (422), Expect = 6e-44
 Identities = 104/460 (22%), Positives = 179/460 (38%), Gaps = 80/460 (17%)

Query: 239 AKSFWNNELSAEQKRSLFRVKIEDLKKH---LTNRKEKDLLSEAIEFAKAHRSWKFWECC 295
            KSFW   L  + KR+  +V I  L  +   +  R+ ++ L + + FA+ +R W+FW C 
Sbjct: 3   LKSFWVG-LDDKTKRNFLKVSIAKLISYVERVYGREGREALEQVLSFARENRKWRFWMCR 61

Query: 296 DCSEKYGDWQSYMQHLCDFHDLRIHQDLASIHPKIVDEDSREMIFNGEWKPVDTEEAIKI 355
            CS+K+   +    HL   H  +         P+ +D+D    I  G+W+PVD   A+++
Sbjct: 62  TCSKKFSSSEECKNHLEQEHAAKFKPSSEMDMPQRIDKDWARKISVGDWEPVDAAAAVEM 121

Query: 356 LENQSKSESYNTDDSYMRAEKGQGEYKGCSDEDVLLTKQLGSESDKEASSIAPTDWPLSD 415
           ++N+ K      +  Y                                      DWPL+D
Sbjct: 122 IKNRLKDVK---EFVYKNG--------WSK------------------------DWPLAD 146

Query: 416 DNKRIALLESLHGTFQFLLRYSFLIQVEIDEVIKYAVAML------KTRFSDSHLRNLGP 469
           D +R  LL+ +      L     L     D V+++ V  L      K    D  L     
Sbjct: 147 DEERSKLLKEIKLLLVSLCDLKILSCSLRDWVMQFTVKHLAKLEVSKQYLDDCSLV---- 202

Query: 470 ETLKLVCFLESSQLNSIIHKLQHVAGTLSENTGIGNSTDEQLTGAKTFDIKEDVALNDNS 529
           ET + +CFLE  +LN I+  L+ +     + T +     +         +KE + L+   
Sbjct: 203 ETPQSICFLECDELNQILKFLKQLKCERDDGTSLVCKAVDSFLDNS--RVKEKIDLDPQF 260

Query: 530 SYLILDGVL------SYDTH---------------------IVSWLYLGHEVGEAIKLWA 562
           S+L+LD  L       +D                       I+SWL+    V +      
Sbjct: 261 SFLLLDKRLLKSEEAPFDDEGTINVFDPNAHYAKVHPQGDDILSWLFDYPSVDKEFPSP- 319

Query: 563 RLRESNRGQRVKLFESFKMERSKFVKMYEERRKLSKKWDALEAVNGIFADEKKRRDENPE 622
            +RE N    + +  + +         Y ++ ++     AL     +   E +RR+   E
Sbjct: 320 -IREHNLDIWLAVLRAVQFTCRTLETKYAKKVQMLDYDAALTEAEDLCISEDERRNNLLE 378

Query: 623 YVWRTFESLLRERLKELEERIDAAAAAYQFELEFILNVLE 662
             W ++ SLLR++ +EL  R D  +   +  L  + +VLE
Sbjct: 379 DQWSSYASLLRDKCEELVGRDDDNSLTTKLFLCAVRDVLE 418

This family represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family. Length = 463

>gnl\|CDD\|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase	Back alignment and domain information

>gnl\|CDD\|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1351
PF04780		466	DUF629: Protein of unknown function (DUF629); Inte	100.0
KOG1887		806	consensus Ubiquitin carboxyl-terminal hydrolase [P	100.0
KOG1865		545	consensus Ubiquitin carboxyl-terminal hydrolase [P	100.0
cd02660		328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	100.0
cd02661		304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	100.0
cd02657		305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	100.0
cd02663		300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	100.0
cd02668		324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	100.0
cd02669		440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	100.0
cd02658		311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	100.0
cd02664		327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	100.0
cd02671		332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	100.0
cd02667		279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	100.0
cd02659		334	peptidase_C19C A subfamily of Peptidase C19. Pepti	100.0
COG5560		823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	100.0
COG5533		415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	100.0
cd02662		240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	100.0
PF00443		269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	100.0
KOG1868		653	consensus Ubiquitin C-terminal hydrolase [Posttran	100.0
cd02674		230	Peptidase_C19R A subfamily of peptidase C19. Pepti	100.0
cd02666		343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	100.0
KOG1867		492	consensus Ubiquitin-specific protease [Posttransla	100.0
cd02673		245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	99.98
KOG1866		944	consensus Ubiquitin carboxyl-terminal hydrolase [P	99.97
cd02665		228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	99.97
cd02257		255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	99.97
COG5077		1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.96
cd02672		268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	99.96
KOG0944		763	consensus Ubiquitin-specific protease UBP14 [Postt	99.95
KOG1870		842	consensus Ubiquitin C-terminal hydrolase [Posttran	99.93
COG5207		749	UBP14 Isopeptidase T [Posttranslational modificati	99.93
KOG1863		1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	99.93
KOG1873		877	consensus Ubiquitin-specific protease [Posttransla	99.92
PF04781		111	DUF627: Protein of unknown function (DUF627); Inte	99.92
PF13423		295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	99.91
KOG4598		1203	consensus Putative ubiquitin-specific protease [Po	99.91
KOG1864		587	consensus Ubiquitin-specific protease [Posttransla	99.87
cd02670		241	Peptidase_C19N A subfamily of Peptidase C19. Pepti	99.86
KOG1872		473	consensus Ubiquitin-specific protease [Posttransla	99.85
KOG1871		420	consensus Ubiquitin-specific protease [Posttransla	99.78
KOG2026		442	consensus Spindle pole body protein - Sad1p [Cytos	99.76
KOG1275		1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.36
PF15499		275	Peptidase_C98: Ubiquitin-specific peptidase-like,	98.26
PRK15359		144	type III secretion system chaperone protein SscB;	96.8
PLN03088		356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.8
TIGR02552		135	LcrH_SycD type III secretion low calcium response	96.71
PRK10370		198	formate-dependent nitrite reductase complex subuni	95.82
PRK11189		296	lipoprotein NlpI; Provisional	95.25
PRK12370		553	invasion protein regulator; Provisional	95.06
PF13894		24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	94.87
cd00189		100	TPR Tetratricopeptide repeat domain; typically con	94.58
PF00096		23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	94.28
COG4783		484	Putative Zn-dependent protease, contains TPR repea	94.27
KOG1887		806	consensus Ubiquitin carboxyl-terminal hydrolase [P	93.44
PF13432		65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	93.28
PRK12370		553	invasion protein regulator; Provisional	93.27
PF13371		73	TPR_9: Tetratricopeptide repeat	93.1
COG3063		250	PilF Tfp pilus assembly protein PilF [Cell motilit	93.07
TIGR02795		119	tol_pal_ybgF tol-pal system protein YbgF. Members	92.82
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	92.65
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	92.51
TIGR00990		615	3a0801s09 mitochondrial precursor proteins import	92.42
PRK10803		263	tol-pal system protein YbgF; Provisional	92.39
TIGR03302		235	OM_YfiO outer membrane assembly lipoprotein YfiO.	91.88
KOG1864		587	consensus Ubiquitin-specific protease [Posttransla	91.8
PRK09782		987	bacteriophage N4 receptor, outer membrane subunit;	91.45
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	91.24
PF13525		203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	90.88
PF08715		320	Viral_protease: Papain like viral protease; InterP	89.87
TIGR03302		235	OM_YfiO outer membrane assembly lipoprotein YfiO.	89.32
PRK10866		243	outer membrane biogenesis protein BamD; Provisiona	89.21
PRK15174		656	Vi polysaccharide export protein VexE; Provisional	89.08
PRK15179		694	Vi polysaccharide biosynthesis protein TviE; Provi	88.06
KOG0553		304	consensus TPR repeat-containing protein [General f	87.76
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	86.73
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	86.6
PF12895		84	Apc3: Anaphase-promoting complex, cyclosome, subun	85.94
PF13371		73	TPR_9: Tetratricopeptide repeat	85.85
PF09295		395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	85.63
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	85.39
PRK15359		144	type III secretion system chaperone protein SscB;	84.64
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	84.53
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	84.5
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	84.37
cd05804		355	StaR_like StaR_like; a well-conserved protein foun	84.31
PRK15179		694	Vi polysaccharide biosynthesis protein TviE; Provi	84.16
PF13432		65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	83.86
PRK02603		172	photosystem I assembly protein Ycf3; Provisional	83.8
PRK09782		987	bacteriophage N4 receptor, outer membrane subunit;	83.76
PF13429		280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	83.0
PLN03088		356	SGT1, suppressor of G2 allele of SKP1; Provisional	82.8
PF14559		68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	82.15
PF12874		25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	82.11
PLN02789		320	farnesyltranstransferase	82.11
PRK10049		765	pgaA outer membrane protein PgaA; Provisional	82.1
COG5010		257	TadD Flp pilus assembly protein TadD, contains TPR	81.35
PRK11447		1157	cellulose synthase subunit BcsC; Provisional	80.86
PRK11906		458	transcriptional regulator; Provisional	80.14

>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function	Back alignment and domain information

Probab=100.00  E-value=1.1e-128  Score=1127.37  Aligned_cols=428  Identities=32%  Similarity=0.522  Sum_probs=410.6

Q ss_pred             hhHHhhhhccCCHHHHcceeEEehHHHHHHHhcccc---hhhHHHHHHHHHhcCceeEeecCccccccCChHHHHHhHHh
Q 000686          237 NVAKSFWNNELSAEQKRSLFRVKIEDLKKHLTNRKE---KDLLSEAIEFAKAHRSWKFWECCDCSEKYGDWQSYMQHLCD  313 (1351)
Q Consensus       237 ~~~r~yW~~~ls~e~kr~FL~V~i~~L~~y~~~~~~---~~~Lseal~fak~n~sW~FW~C~~Cs~kF~d~~~~~~Hl~~  313 (1351)
                      ++||+||+ +||+|+||+||+|+|++|++||.+.++   +++|++||+||++|++|+||+||+|++||+|+++|++||++
T Consensus         1 ~~vr~yW~-sms~E~kr~FLkVsi~eL~sy~~~~~~~~a~~~Lseal~fak~n~sWrFWiCp~CskkF~d~~~~~~H~~~   79 (466)
T PF04780_consen    1 DRVRSYWN-SMSSEQKRDFLKVSIDELKSYYESVYDREAADALSEALSFAKENKSWRFWICPRCSKKFSDAESCLSHMEQ   79 (466)
T ss_pred             CchhHhhc-cCCHHHhcCceeeEHHHHHHHHHhccchHHHHHHHHHHHHHHhcCceeEeeCCcccceeCCHHHHHHHHHH
Confidence            47999999 999999999999999999999999954   99999999999999999999999999999999999999999


Q ss_pred             hccccCcccccccCCCCCCHHHHhhhhcCCcccccHHHHHHHHHhhcccCcCCCCchhhhhhcCcCCCCCCCcchhhhhh
Q 000686          314 FHDLRIHQDLASIHPKIVDEDSREMIFNGEWKPVDTEEAIKILENQSKSESYNTDDSYMRAEKGQGEYKGCSDEDVLLTK  393 (1351)
Q Consensus       314 eH~~~l~p~l~~~~pq~id~~w~~~i~~~~WkPvD~~aa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (1351)
                      +|+++++|+++++|||+||++|++||++|+||||||+||++|||||+|++++           |.+              
T Consensus        80 eH~~~l~P~lqs~lPqrId~~w~e~I~~~~WkPvD~~AA~~mik~~~k~~~~-----------~~~--------------  134 (466)
T PF04780_consen   80 EHPAGLKPKLQSVLPQRIDDDWAEMISVGSWKPVDAVAAVEMIKNRLKDVKS-----------FVY--------------  134 (466)
T ss_pred             hhhhhcChhhhhhcCcccCHHHHHHHhcCCCccccHHHHHHHHHHHHhhcch-----------hhh--------------
Confidence            9999999999999999999999999999999999999999999999999887           555              


Q ss_pred             ccCCCCcccccCCCCCCCCCCChHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHhhcccCCccccc-cCCCC-C
Q 000686          394 QLGSESDKEASSIAPTDWPLSDDNKRIALLESLHGTFQFLLRYSFLIQVEIDEVIKYAVAMLKTRFSDSHLR-NLGPE-T  471 (1351)
Q Consensus       394 ~~~~~~~~~~~~~~~~dWPl~dD~eR~klL~kI~~~f~~l~~~k~Ls~s~~~~vi~ft~~~l~~~~s~~~l~-~~~~~-t  471 (1351)
                        +|||+++        ||||+|+||+|||||||.+|++||+||||||||+||||+||++||++++++++++ +|+++ |
T Consensus       135 --~~gw~~~--------WPla~DeeR~klLkkI~~ll~~l~~~k~Ls~s~~~~vi~ft~~~L~~l~v~~~~L~~~~l~~t  204 (466)
T PF04780_consen  135 --KNGWSKD--------WPLADDEERAKLLKKIHSLLKSLCKHKILSCSHRDWVIQFTVEELQKLEVSSQLLVNCSLDET  204 (466)
T ss_pred             --hcCCCCC--------CCCCCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhHHHHhccCcchhhhhhccCCCC
Confidence              4555576        9999999999999999999999999999999999999999999999999655555 88888 9


Q ss_pred             cceeeccCCcchHHHHHHHHHhhccccccCCCCCccccccccCCccccccceeecCCcceEEEeccc-------------
Q 000686          472 LKLVCFLESSQLNSIIHKLQHVAGTLSENTGIGNSTDEQLTGAKTFDIKEDVALNDNSSYLILDGVL-------------  538 (1351)
Q Consensus       472 p~~IcFLe~~~L~~il~fL~~l~~~l~~~~~~~~~~~~~~~~~~~~~vke~I~l~~~~s~LlLD~rl-------------  538 (1351)
                      |||||||||+||++||+||++|++.  +++|+++|++++|+|+++++|||+|+||+|||+||||+||             
T Consensus       205 P~~ICFLe~~~L~~Il~fL~~l~~~--~~~~~~~v~~~~~~~~~~~~vkekI~ld~~~S~LLLDkrll~~~~~~~dd~gt  282 (466)
T PF04780_consen  205 PQCICFLECSQLNKILKFLQELKCR--RDDGTSLVCRDVDSFWEGSRVKEKIDLDSDFSCLLLDKRLLKGELDPFDDEGT  282 (466)
T ss_pred             CceeEecCcHHHHHHHHHHHHHhhc--cccCcccccccccccccccccceeeecCCccceeeechhhhccCCCccCcCCc
Confidence            9999999999999999999999988  9999999999999999999999999999999999999999             


Q ss_pred             --------------cCCCceeEeecccccchhhccchHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Q 000686          539 --------------SYDTHIVSWLYLGHEVGEAIKLWARLRESNRGQRVKLFESFKMERSKFVKMYEERRKLSKKWDALE  604 (1351)
Q Consensus       539 --------------~~~D~~~sWL~~~~s~~e~~~sw~~~re~~~~~~~~vl~~~~~~~~~L~~~~~~K~~~l~y~~al~  604 (1351)
                                    |+||+|+||||+|||++++|++|+++|+||++||++|||+|++||++|+++|++|+++|+||+||+
T Consensus       283 i~~~~~~~~~~~~~~~gD~ilsWlf~~~s~~~~l~sw~~~~~~~~~~~~avl~~v~~~~~~L~~~y~kK~~~l~ye~aL~  362 (466)
T PF04780_consen  283 INVFDPNVHYADVQPQGDDILSWLFDGPSIDEQLPSWIRMREHNLDIWVAVLRAVEKEFRTLQSKYEKKCEHLSYEEALQ  362 (466)
T ss_pred             eeccCCCcccccCCCCCCceeEEeccCCcccccccchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence                          789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhhhcccCcchhhhhHHHHHHHHHHHH-HHhhhHhHhhhhHHHHHHHHHhhhhhhccccCcccc----cccc
Q 000686          605 AVNGIFADEKKRRDENPEYVWRTFESLLRERLKEL-EERIDAAAAAYQFELEFILNVLETDRAVAAFQFENT----SRVH  679 (1351)
Q Consensus       605 ~ve~lc~~e~~rR~~~~e~~~~~y~slL~~r~~e~-~~~~~~~~~~~~~~~~~i~~vl~~~~~~~~f~~~~~----~~~~  679 (1351)
                      +|||||++|++||++++||+||+||||||+||||+ ++++| +++++|+|||||+|||+||++ |+|+|.+.    |.|+
T Consensus       363 ~ve~lc~~E~~rR~~~~e~~~~~y~slL~~~~eel~~~~~d-~~~~~k~~l~~v~~Vl~~a~~-~~f~~~~~~~~~~~i~  440 (466)
T PF04780_consen  363 AVENLCLEEDKRRENLPEDQWQSYASLLRKRCEELVENDDD-NSLSTKFELDAVRDVLKEAST-PTFNFFGYEDCTSLIR  440 (466)
T ss_pred             HHHHHHhhcccccccccchhhHHHHHHHHHHHHHHhccccc-ccccchhhHHHHHHHHhhccc-CCCCCcccHHHHHHHh
Confidence            99999999999999999999999999999999999 57777 999999999999999999999 88888776    7999


Q ss_pred             cccc-CchhHHHHHHhhhhhcccccc
Q 000686          680 ENWN-QSDEYVGEKILSWTNQLGNDI  704 (1351)
Q Consensus       680 ~~~~-~~d~~v~~~i~~~~~~~~~~~  704 (1351)
                      ++.+ .+|+.|.++|..++++|+.+|
T Consensus       441 ~~~s~~~dd~~~~~~~~l~s~v~~~~  466 (466)
T PF04780_consen  441 DLKSGESDDRVKKSIHLLDSVVQFKV  466 (466)
T ss_pred             cccccccchHHHHHHHHHHHHHhhcC
Confidence            9999 999999999999999998764

A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.

>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02660 Peptidase_C19D A subfamily of Peptidase C19	Back alignment and domain information

>cd02661 Peptidase_C19E A subfamily of Peptidase C19	Back alignment and domain information

>cd02657 Peptidase_C19A A subfamily of Peptidase C19	Back alignment and domain information

>cd02663 Peptidase_C19G A subfamily of Peptidase C19	Back alignment and domain information

>cd02668 Peptidase_C19L A subfamily of Peptidase C19	Back alignment and domain information

>cd02669 Peptidase_C19M A subfamily of Peptidase C19	Back alignment and domain information

>cd02658 Peptidase_C19B A subfamily of Peptidase C19	Back alignment and domain information

>cd02664 Peptidase_C19H A subfamily of Peptidase C19	Back alignment and domain information

>cd02671 Peptidase_C19O A subfamily of Peptidase C19	Back alignment and domain information

>cd02667 Peptidase_C19K A subfamily of Peptidase C19	Back alignment and domain information

>cd02659 peptidase_C19C A subfamily of Peptidase C19	Back alignment and domain information

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02662 Peptidase_C19F A subfamily of Peptidase C19	Back alignment and domain information

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02674 Peptidase_C19R A subfamily of peptidase C19	Back alignment and domain information

>cd02666 Peptidase_C19J A subfamily of Peptidase C19	Back alignment and domain information

>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19	Back alignment and domain information

>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02665 Peptidase_C19I A subfamily of Peptidase C19	Back alignment and domain information

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases	Back alignment and domain information

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02672 Peptidase_C19P A subfamily of Peptidase C19	Back alignment and domain information

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function	Back alignment and domain information

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase	Back alignment and domain information

>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02670 Peptidase_C19N A subfamily of Peptidase C19	Back alignment and domain information

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]	Back alignment and domain information

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]	Back alignment and domain information

>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase	Back alignment and domain information

>PRK15359 type III secretion system chaperone protein SscB; Provisional	Back alignment and domain information

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional	Back alignment and domain information

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD	Back alignment and domain information

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional	Back alignment and domain information

>PRK11189 lipoprotein NlpI; Provisional	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A	Back alignment and domain information

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Back alignment and domain information

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]	Back alignment and domain information

>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B	Back alignment and domain information

>PRK12370 invasion protein regulator; Provisional	Back alignment and domain information

>PF13371 TPR_9: Tetratricopeptide repeat	Back alignment and domain information

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	Back alignment and domain information

>PRK10803 tol-pal system protein YbgF; Provisional	Back alignment and domain information

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO	Back alignment and domain information

>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A	Back alignment and domain information

>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein	Back alignment and domain information

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO	Back alignment and domain information

>PRK10866 outer membrane biogenesis protein BamD; Provisional	Back alignment and domain information

>PRK15174 Vi polysaccharide export protein VexE; Provisional	Back alignment and domain information

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional	Back alignment and domain information

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A	Back alignment and domain information

>PF13371 TPR_9: Tetratricopeptide repeat	Back alignment and domain information

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>PRK15359 type III secretion system chaperone protein SscB; Provisional	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals	Back alignment and domain information

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional	Back alignment and domain information

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B	Back alignment and domain information

>PRK02603 photosystem I assembly protein Ycf3; Provisional	Back alignment and domain information

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional	Back alignment and domain information

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B	Back alignment and domain information

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional	Back alignment and domain information

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A	Back alignment and domain information

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A	Back alignment and domain information

>PLN02789 farnesyltranstransferase	Back alignment and domain information

>PRK10049 pgaA outer membrane protein PgaA; Provisional	Back alignment and domain information

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK11447 cellulose synthase subunit BcsC; Provisional	Back alignment and domain information

>PRK11906 transcriptional regulator; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1351
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
2ayn_A		404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	8e-08
3nhe_A		348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	1e-06
2y6e_A		367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	1e-06
3i3t_A		355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	1e-04
2gfo_A		396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 57.6 bits (138), Expect = 3e-08
 Identities = 79/518 (15%), Positives = 144/518 (27%), Gaps = 153/518 (29%)

Query: 371 YMRAEKGQGEYK----------------GCSD-EDVL---LTKQLGSESD---KEASSIA 407
           +M  E G+ +Y+                 C D +D+    L+K+   E D       +++
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE---EIDHIIMSKDAVS 62

Query: 408 PTD---WPLSDDNKRIA--LLESLHGTFQFLLRYSFL---IQVEIDEVIKYAVAMLKTRF 459
            T    W L    + +    +E +         Y FL   I+ E  +      +M+   +
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRI-----NYKFLMSPIKTEQRQP-----SMMTRMY 112

Query: 460 SDSH--LRNLGPETLKL-VCFLES-SQLNSIIHKLQHVAG-TLSENTGIGNSTDEQLTGA 514
            +    L N      K  V  L+   +L   + +L+      +    G G +    +   
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---VALD 169

Query: 515 KTFDIKEDVALNDNSSYLILDGVLSYDTHIVSWLYLG--HEVGEAIK----LWARLR--- 565
                K    ++                  + WL L   +     ++    L  ++    
Sbjct: 170 VCLSYKVQCKMDFK----------------IFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 566 --ESNRGQRVKL-FESFKMERSKFVKMYEERRKLSKKWDALEAVNGIFADEKKRRDENPE 622
              S+    +KL   S + E  + +K       L      L  V             N +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----LVLLNVQ------------NAK 257

Query: 623 YVWRTFE----SLLRERLKELEERIDAAAAAYQFELEFILNVLETDRAVAAFQFENTSRV 678
             W  F      LL  R K++ + + AA       L+     L  D   +          
Sbjct: 258 -AWNAFNLSCKILLTTRFKQVTDFLSAATT-THISLDHHSMTLTPDEVKSLL-------- 307

Query: 679 HENW-NQSDE---------------YVGEKILSWTNQLGNDIWLE-NVRIITSIVSMKLF 721
              + +   +                + E I        N  W   N   +T+I+   L 
Sbjct: 308 -LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESSLN 364

Query: 722 NLQLGEISAYEYQLILLPMFRSLVK------SRL----ERHIDEEAVKKLNEIQKGLEEP 771
            L+  E     +    L +F           S +     +      V KL   +  L E 
Sbjct: 365 VLEPAEYRKM-FD--RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL--HKYSLVEK 419

Query: 772 DNKGQTQG--------KSKNKKNKNKNKKRKDQREAKD 801
             K  T          K K +     ++   D      
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404	Back alignment and structure

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348	Back alignment and structure

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367	Back alignment and structure

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355	Back alignment and structure

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1351
d2gfoa1		348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	1e-06
d1nbfa_		347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	7e-06
d2hd5a1		336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	8e-06

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 1e-06
 Identities = 46/315 (14%), Positives = 104/315 (33%), Gaps = 30/315 (9%)

Query: 1019 YM--IIQSLWNLREFQE-----ECKKKLDEVQKHDGNPCIVCAFFDICAA--KNRGEAVD 1069
            YM  I+Q L N     +       +  ++          +   F  I  A    +   + 
Sbjct: 26   YMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYIS 85

Query: 1070 PTELRIALSTYYCNQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNS------------DD 1117
            P + +I +         + +    D+   LL +   LH      ++            DD
Sbjct: 86   PKDFKITIGKINDQFAGYSQ---QDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDD 142

Query: 1118 KPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHM-RSGYQKCTYLSFGISANNLRS 1176
                 +  + H   +  ++  +F      +++C+ CH     ++   YLS  +++ +  +
Sbjct: 143  FKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCT 202

Query: 1177 LKNEHMDMSSKKVLELMGLGEQMTCGCGQLNSIYHSLWRLP-HVFVSVIDWQRGDESSED 1235
            L++     S ++ L          C   + +     +W+LP  + V +  +       + 
Sbjct: 203  LQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQK 262

Query: 1236 ISTTLSALSNELDLSKLFQGYL-PDYTYFVVSMVCFCKDRQ--HSVCFLYDDQHDEHYVQ 1292
            + T++      LDLS+   G       Y + S+          H   +  +      + +
Sbjct: 263  LQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWF-K 321

Query: 1293 HSDSNVEAYSEVNIL 1307
              D  V   S  ++ 
Sbjct: 322  FDDHEVSDISVSSVK 336

PyMOL of d2gfoa1

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347	Back information, alignment and structure

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1351
d1nbfa_		347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	100.0
d2ayna1		383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	100.0
d2hd5a1		336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	100.0
d2gfoa1		348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	100.0
d1vjva_		397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	100.0
d1elwa_		117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.6
d1a17a_		159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.28
d1fcha_		323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.0
d1hxia_		112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.93
d2c2la1		201	STIP1 homology and U box-containing protein 1, STU	94.49
d1w3ba_		388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	93.75
d1fcha_		323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	92.45
d1w3ba_		388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	90.37
d1hh8a_		192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	90.06
d1xnfa_		259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	87.2
d1zbpa1		264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	84.61

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-45  Score=359.70  Aligned_cols=295  Identities=12%  Similarity=0.127  Sum_probs=218.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHCC
Q ss_conf             567654569987088999999219588999996389866668998518999999999806-8997692999999985301
Q 000686         1004 VLGTGLGKEAANNFLYMIIQSLWNLREFQEECKKKLDEVQKHDGNPCIVCAFFDICAAKN-RGEAVDPTELRIALSTYYC 1082 (1351)
Q Consensus      1004 ~~~tGL~NlgGTCYLNSILQsL~hlp~FRe~LLs~~~~~h~~~~d~cI~caLq~LF~s~~-~~~~vsP~~Lr~aL~~~~p 1082 (1351)
                      .+.+||.|+||||||||+||||+|+|+||++++.....  ......++.++|+.+|..+. ...++.|..+...+..   
T Consensus         4 ~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~--~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~~~~~~~~---   78 (347)
T d1nbfa_           4 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE--GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGW---   78 (347)
T ss_dssp             SSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCT--TCCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHTTC---
T ss_pred             CCCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCH---
T ss_conf             99729863996569999999998479999999707766--8864126999999999998657997571999976230---


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCC-CCC
Q ss_conf             7855313344658999999999999985038999998521001244578764010121679962664157998556-322
Q 000686         1083 NQNNFQEGQVNDAYLFLLVIFKVLHVAFYAVNSDDKPEDMYKDRLHCVDSNCLVHRIFGMDIFESIECINCHMRSG-YQK 1161 (1351)
Q Consensus      1083 ~~~~F~~g~QqDA~EFL~~LLd~LH~~l~~~~sd~~sE~~~~~~~~c~~~~siVh~LFgG~l~s~i~C~~Cg~~S~-~~~ 1161 (1351)
                        ..|..+.||||+||+..||+.||.++....                 ..++++++|+|.+.++++|..|++.+. .++
T Consensus        79 --~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~-----------------~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~  139 (347)
T d1nbfa_          79 --ETLDSFMQHDVQELCRVLLDNVENKMKGTC-----------------VEGTIPKLFRGKMVSYIQCKEVDYRSDRRED  139 (347)
T ss_dssp             --CGGGGGSCBCHHHHHHHHHHHHHHHHTTST-----------------TTTHHHHHHCEEEEEEEEESSSCCEEEEEEE
T ss_pred             --HHCCHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------CCCCCCCEECEEEEEEEEECCCCCEEEEECC
T ss_conf             --002067787799999999998888875033-----------------3456550113478986780786614223223


Q ss_pred             CCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHC----CC--CCCCCC-CCCCC-EEEEEEECCCCEEEEEEEEECCCCCC
Q ss_conf             420110026200000000023438999998716----89--820026-99842-08988703796499999840688764
Q 000686         1162 CTYLSFGISANNLRSLKNEHMDMSSKKVLELMG----LG--EQMTCG-CGQLN-SIYHSLWRLPHVFVSVIDWQRGDESS 1233 (1351)
Q Consensus      1162 F~dLsl~I~a~slr~~k~~~~~~SFeelLk~~~----~d--d~~~C~-Cgk~~-~k~~~IsrlP~VLtIhLkRF~~~~s~ 1233 (1351)
                      |.++++.|+..           .++.+++..+.    ++  +.+.|. |+... .++..|.++|+||+|||+||......
T Consensus       140 f~~l~L~i~~~-----------~~~~~~l~~~~~~e~l~~~~~~~~~~~~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~  208 (347)
T d1nbfa_         140 YYDIQLSIKGK-----------KNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQT  208 (347)
T ss_dssp             ESSEEEECTTC-----------CBHHHHHHHHTCCEEECGGGCEECSTTCEECEEEEEEEEECCSEEEEEEECEEEETTT
T ss_pred             CCCCCCCCCCC-----------CCHHHHHHHHCCHHEECCCCCCCCCCCCCEECCEEEEEEECCCHHEEEEEEEEECCCC
T ss_conf             22331011233-----------3103567764120224143100245676301217899982698004751001342235


Q ss_pred             CCCCCEE--ECCCCCCCCCCCCCCCC--CCCEEEEEEEEEEEC--CCCEEEEEEEECCCCCCEEEEECCEEEECCCHHHH
Q ss_conf             3333303--30474201564535789--996089999999857--99808999982389997899639904481760444
Q 000686         1234 EDISTTL--SALSNELDLSKLFQGYL--PDYTYFVVSMVCFCK--DRQHSVCFLYDDQHDEHYVQHSDSNVEAYSEVNIL 1307 (1351)
Q Consensus      1234 ~dIsktl--~~i~~pLDLs~~y~g~d--~~~~Y~L~AVV~H~g--eGGHYvAyvR~~~~~g~W~~FDDs~Vt~Vsswe~V 1307 (1351)
                      ....++.  +.++..|||+++.....  ....|.|+|||+|.|  ++|||+||+|+. .+++||.|||+.|+.| +|+.|
T Consensus       209 ~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~-~~~~W~~fnD~~V~~v-~~~ev  286 (347)
T d1nbfa_         209 DQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPK-GDGKWCKFDDDVVSRC-TKEEA  286 (347)
T ss_dssp             TEEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEEEETTEEEEEEEECTT-SSSCCEEEETTEEEEC-CHHHH
T ss_pred             CCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEECC-CCCEEEEEECCCEEEC-CHHHH
T ss_conf             731015724764544134653233334576440567999845878799899806138-9998999989960898-89999


Q ss_pred             HHCCCCCCCCC--CCCCCCEEEEEEECCCC
Q ss_conf             20257652000--00124268999853899
Q 000686         1308 ATDDNHSETLD--MMISFQRLIGLKQDHDG 1335 (1351)
Q Consensus      1308 l~k~~~s~~~p--~~l~~QpylLFYq~~~~ 1335 (1351)
                      +..+.+..-.+  .....+||+|||++.+.
T Consensus       287 ~~~~~g~~~~~~~~~~~~~aYiLfY~r~~~  316 (347)
T d1nbfa_         287 IEHNYGGHDDDLSVRHCTNAYMLVYIRESK  316 (347)
T ss_dssp             TGGGSCCCCSCCSTTTTEEEEEEEEEEGGG
T ss_pred             HHHHCCCCCCCCCCCCCCCEEEEEEEECCC
T ss_conf             875158876554557789779999996372

PyMOL of d1nbfa_

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}	Back information, alignment and structure