Citrus Sinensis ID: 000693

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------135

MEEETQVGSEVPVMKAVEDIDPIKETNGGLPQVGKEGKKEEEENALDAEFIKVEKEALDVKEVSHMAEPAAAEEDDKPSVVDRSSSSSSRELLEANEKVKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLKQGGEDTPSEVKDAAEIKSRDIGSVISTPSKRKSKKLEAAAQTSSTREIPTARADASPVMTFKFIIGVALVSVIIGITLGKRY

cccccccccccccHHcHHccccHHHHcccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHcccccccHHHHccccHHHHHHHHHHHHHHHHHHHHccccc

ccHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccc

meeetqvgsevpvmkavedidpiketngglpqvgkegkkeeeENALDAEFIKVEKEAldvkevshmaepaaaeeddkpsvvdrssssssRELLEANEKVKELEIELERAATALKNAEIEnarlqddvLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHkqsgshaesESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRnsdenfcktDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVelkssdserEVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKersaededranmshqrsIELEDLFQTshsklegtgkRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANnkannsssENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRsghferesgglvetnlkLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEqrgadsqkdSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLkqggedtpsevkdaaeiksrdigsvistpskrksKKLEAAAQtsstreiptaradaspvmtFKFIIGVALVSVIIGITLGKRY

meeetqvgsevpvmkavedidpiketngglpqvgkegkkEEEENALDAEFIKVEKEALDVKEVSHMAepaaaeeddkpsvvdrssssssrelleaNEKVKELEIELERAATAlknaeienarlqddvliTKEKLEesgkkceeleigQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKqsgshaesesqRALEFERLLETANVSAKEVEGQMASLQEELKglnekisekeKVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETgaaaatasqrNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLvelkssdserevREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELIlnqsntrsseleeelritkersaededranmshqrsieledlfqtshsklegtgkrvNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNaaadekrklqdtsngynEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEAnnkannsssenELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRftqrdieannlNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQtrsghferesgglvetnLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQfkeevenvkvsaagkeaelnsKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAeqrgadsqkdSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAklkqggedtpsevkdaaeiksrdigsvistpskrkskkleaaaqtsstreiptaradaspVMTFKFIIGVALVSVIIGITLGKRY

MEEETQVGSEVPVMKAVEDIDPIKETNGGLPQVgkegkkeeeeNALDAEFIKVEKEALDVKEVSHMaepaaaeeDDKPSVVDRssssssRELLEANEKVKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNekisekekveeelkRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDsllsqalannaelelklksleeQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSveleqqlnlvelKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYneklaeaenllellrndlnMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQvveannkannsssenellvetnnQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAetrkfeleetllklknlestVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVaeleqklqqaqaklkqggeDTPSEVKDAAEIKSRDIGSVISTPSKRKSKKLEAAAQTSSTREIPTARADASPVMTFKFIIGVALVSVIIGITLGKRY

*************************************************************************************************************************************************************************************************************************************************************************************************************KLQLLDLEQRF***EALITNLTQELDL********************************************************************************************************************************************************************************************************************************************************************************************************************LELLLEAEKYR*******************************************************************************************************************************************************************************************************QLAEAAGKYALLKEELDSYFIKVTS***********************************************************************************************LHEAIQRFT***********************************************************************LVETNLKLTEDLALYETKLSDLQAKLSATIV**************************************************************FALETRIKELEELLVNVETQF*********************************ALYEQVIQLQRELQIA******************************************************************************************************************PVMTFKFIIGVALVSVIIGITLG***

********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KFIIGVALVSVIIGITLGKRY

**********VPVMKAVEDIDPIKETNGGLP************NALDAEFIKVEKEALDVKEVSHM*******************************KVKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFE*****************LEFERLLETANVSAKEVEGQMASLQEELKGLNEKISE************TEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQ*************RNLELEDIIRASNE********LRELEPRFIAAEQRSVELEQQLNLVELKS**************SQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQS************ITKERS**********HQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLE**************DKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVL**************ESLMRESEMKLQDALANIT**********EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEA*************LVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYE*********AETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAI*******************SSLEELGAKNKEAALLQNKVAELEQKL*******************DAAEIKSRDIGSVIS************************ARADASPVMTFKFIIGVALVSVIIGITLGKRY

*********EVPVMKAVEDIDPIKETNGGLPQVGKEGKKEEEENALDAEFIKVEKEALDVKEVSHMAEPAAAEEDDKPSVVDRSSSSSSRELLEANEKVKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQKLQQAQAKLKQGGEDTPSEVKDAAEIKSRDIGSVIS*****************************SPVMTFKFIIGVALVSVIIGITLGKRY

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii

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

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1349
224086600		1259	predicted protein [Populus trichocarpa]	0.930	0.996	0.604	0.0
147862641		1430	hypothetical protein VITISV_033286 [Viti	0.977	0.921	0.555	0.0
356540952		1304	PREDICTED: uncharacterized protein LOC10	0.959	0.993	0.545	0.0
356544363		1321	PREDICTED: uncharacterized protein LOC10	0.954	0.974	0.532	0.0
357474015		1322	hypothetical protein MTR_4g076030 [Medic	0.954	0.973	0.524	0.0
240254562		1333	uncharacterized protein [Arabidopsis tha	0.963	0.975	0.530	0.0
449460006		1582	PREDICTED: uncharacterized protein LOC10	0.806	0.687	0.579	0.0
449502175		1085	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.800	0.995	0.581	0.0
25408221		1269	probable myosin heavy chain [imported] -	0.936	0.996	0.522	0.0
414883542		768	TPA: hypothetical protein ZEAMMB73_30987	0.567	0.997	0.648	0.0

>gi\|224086600\|ref\|XP_002307915.1\| predicted protein [Populus trichocarpa] gi\|222853891\|gb\|EEE91438.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1383 bits (3580), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 818/1353 (60%), Positives = 1008/1353 (74%), Gaps = 98/1353 (7%)

Query: 1    MEEETQVGSEVPVMKAVEDI-DPIKETNGGLPQVGKEGKKEEEENALDAEFIKVEKEALD 59
            ME ETQV SEVPV+K   D+ D IK TNG L  V KEG+KEE+E   D EFIKVEKE+LD
Sbjct: 1    MEGETQVSSEVPVVKGDPDVADLIKLTNGDLTHVEKEGRKEEDET--DGEFIKVEKESLD 58

Query: 60   VKEV-SHMAEPAAAEEDDKPSVVDRSSSSSSRELLEANEKVKELEIELERAATALKNAEI 118
            VK+  SH AE  +A E DKPSVV+RS S S+RELLEA EK+KELE+ELER + ALK++E 
Sbjct: 59   VKDGGSHTAEVKSAGEADKPSVVERSLSGSTRELLEAQEKLKELELELERVSAALKHSES 118

Query: 119  ENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEA 178
            EN  L+DDVL+  EKL+ESGKK  ELEI  KK QEQI+EA EK++++L+ ++EALQA+E 
Sbjct: 119  ENTLLKDDVLLANEKLDESGKKYGELEISHKKLQEQIIEAEEKFSAQLHTLQEALQAKET 178

Query: 179  KRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQR 238
            K KEL EVKE+FDG++LE+E SR ++QELEH+L+ S  EA+KFEELHK+SG HAESE+QR
Sbjct: 179  KHKELVEVKESFDGITLELENSRKKMQELEHELEVSSGEAKKFEELHKESGLHAESETQR 238

Query: 239  ALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEEL 298
            ALEFERLLE A +SAKE+E QMA+LQEE+KGL EK++   KVE  LK +  E+SA  EEL
Sbjct: 239  ALEFERLLEAAKLSAKEMENQMATLQEEVKGLYEKVAGNLKVEGALKSTTAELSAANEEL 298

Query: 299  GLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKV 358
              SK Q LD+EQR SSKEALI  LTQELDL KASESQ KE+  AL+NLL   KE+L AKV
Sbjct: 299  AASKSQQLDIEQRLSSKEALIGELTQELDLKKASESQVKEDFLALENLLTATKEDLQAKV 358

Query: 359  SELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIA 418
            SE+E +KL+LQEE+N RESVEA LKT EAQV+ V EEL KV KEKEALEAAMADLT N A
Sbjct: 359  SEMEGMKLRLQEEINTRESVEAGLKTHEAQVATVQEELAKVLKEKEALEAAMADLTSNAA 418

Query: 419  RMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQ 478
            +MKELC ELEEKL+ SDENFCK DSLLSQAL+N+AELE KLK LE+ H+E+GAAAATASQ
Sbjct: 419  QMKELCGELEEKLKTSDENFCKADSLLSQALSNSAELEQKLKFLEDLHSESGAAAATASQ 478

Query: 479  RNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVRE 538
            +NLELED+IRASNEAAEEAKSQLRELE RF+AAE+++VELEQQLNLVELKSSD+ER+VRE
Sbjct: 479  KNLELEDLIRASNEAAEEAKSQLRELEIRFVAAEKKNVELEQQLNLVELKSSDAERQVRE 538

Query: 539  FSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKER 598
            FSEK+S+LST LKEVE EK QL  QM +Y++KI+ LE  LNQS++R+SELEEEL+I KE+
Sbjct: 539  FSEKISELSTTLKEVEGEKNQLSAQMEEYQEKISHLESSLNQSSSRNSELEEELKIAKEK 598

Query: 599  SAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKL 658
             A  EDRA M +QRS+ELEDLFQTSHS+LE  GK+ +E  LLLEAEKYRI+ELEEQ S  
Sbjct: 599  CAGHEDRAKMHYQRSLELEDLFQTSHSRLEDAGKKASEFVLLLEAEKYRIKELEEQNSAF 658

Query: 659  EKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEK 718
            EKKC +AEA S++Y DK+ ELASE+EA+QA++SSLEV+LQMA +KE ELTE LN   DEK
Sbjct: 659  EKKCVDAEADSRKYLDKISELASEIEAYQAKSSSLEVSLQMAGEKETELTELLNLVTDEK 718

Query: 719  RKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAE 778
            ++L++ S+  NEKL+EAENL+ +LRN+L + QE+LESIE DLKAAGL+E+D+M KLKSAE
Sbjct: 719  KRLEEASSSSNEKLSEAENLVGVLRNELIVMQEKLESIENDLKAAGLKESDIMVKLKSAE 778

Query: 779  EQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLE 838
            EQLEQQ ++LE+ATSR SELESLHE+L R+SE+KLQ+AL N T+RDSEAKS  EKL  LE
Sbjct: 779  EQLEQQEKLLEEATSRKSELESLHEALTRDSEIKLQEALTNFTNRDSEAKSLFEKLNTLE 838

Query: 839  GQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENE 898
             QVK Y+EQ+ E  G+ ALLKEELD   +K+ +LE++NEEL+ Q+VEA  K +NS SENE
Sbjct: 839  DQVKEYKEQITEVTGRSALLKEELDLCLLKMVALETSNEELKSQIVEAETKFSNSFSENE 898

Query: 899  LLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEA 958
            LLVETNNQLKSK+ ELQELL+SA                                    +
Sbjct: 899  LLVETNNQLKSKIDELQELLNSA------------------------------------S 922

Query: 959  RVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEE 1018
            R+  AE QL EAIQ  T +D+E  +LNEK+  LEGQ+K YEEQA EAST++E+RK ELEE
Sbjct: 923  RMMHAETQLQEAIQSLTLKDVETRDLNEKLKALEGQVKLYEEQAHEASTISESRKGELEE 982

Query: 1019 TLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVE 1078
            TLLK+ +LE+ +EEL+T+SGHFE+ESG L E NLKLT++LA YE+KL DL+AKLS  + E
Sbjct: 983  TLLKVTHLETVLEELKTKSGHFEKESGVLAEDNLKLTQELASYESKLRDLEAKLSTILSE 1042

Query: 1079 KDETVEQLHASKKAIEDLTQKLTSEVQGLQTQLEAQLNEKKATEETFKSEIESLKAQAAE 1138
            KD T+EQLH SKKA EDL Q+LT E Q LQ+Q                  IESLKA+ AE
Sbjct: 1043 KDGTIEQLHISKKAFEDLRQQLTDEGQKLQSQ------------------IESLKAEVAE 1084

Query: 1139 KFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQ 1198
            K AL+T ++ELE+ L     + KE++E        KEA L     D   + K+ + L  Q
Sbjct: 1085 KSALQTSLEELEKQLTTAAVELKEQLE--------KEAALKKSFADLEAKNKEVSHLENQ 1136

Query: 1199 VIQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVAELEQK 1258
            V +L+++LQ A   + E+             +L   L            ++  +++LE K
Sbjct: 1137 VKELEQKLQEADAKLLEK------------VSLYLPL-----------FMEFSLSKLE-K 1172

Query: 1259 LQQAQAKLKQGGEDTPSEVKDAAEIKSRDIGSVISTPSKRKS-KKLE-AAAQTSSTREIP 1316
            +   + KL+   E      +   EIKSRDI + ISTP+KRKS KKLE A+AQ SS+ E  
Sbjct: 1173 ISHEEVKLEINAE------QKGVEIKSRDISAAISTPTKRKSKKKLEAASAQASSSSETH 1226

Query: 1317 TARADASPVMTFKFIIGVALVSVIIGITLGKRY 1349
            T  AD SP M FKFI+GVALVS+IIG+ LGKRY
Sbjct: 1227 TQTADVSPAMNFKFILGVALVSIIIGVILGKRY 1259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|147862641\|emb\|CAN81488.1\| hypothetical protein VITISV_033286 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356540952\|ref\|XP_003538948.1\| PREDICTED: uncharacterized protein LOC100801514 [Glycine max]	Back alignment and taxonomy information

>gi\|356544363\|ref\|XP_003540622.1\| PREDICTED: uncharacterized protein LOC100792883 [Glycine max]	Back alignment and taxonomy information

>gi\|357474015\|ref\|XP_003607292.1\| hypothetical protein MTR_4g076030 [Medicago truncatula] gi\|355508347\|gb\|AES89489.1\| hypothetical protein MTR_4g076030 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|240254562\|ref\|NP_565741.4\| uncharacterized protein [Arabidopsis thaliana] gi\|330253560\|gb\|AEC08654.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449460006\|ref\|XP_004147737.1\| PREDICTED: uncharacterized protein LOC101211772 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449502175\|ref\|XP_004161564.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101225995, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|25408221\|pir\|\|F84730 probable myosin heavy chain [imported] - Arabidopsis thaliana	Back alignment and taxonomy information

>gi\|414883542\|tpg\|DAA59556.1\| TPA: hypothetical protein ZEAMMB73_309877 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1349
TAIR\|locus:2045412		1333	AT2G32240 "AT2G32240" [Arabido	0.983	0.995	0.445	5.4e-269
TAIR\|locus:2207230		790	AT1G05320 "AT1G05320" [Arabido	0.541	0.925	0.270	1.1e-58
DICTYBASE\|DDB_G0286355		2116	mhcA "myosin heavy chain" [Dic	0.848	0.540	0.215	1.4e-37
FB\|FBgn0020503		1690	CLIP-190 "Cytoplasmic linker p	0.813	0.649	0.211	1.5e-36
FB\|FBgn0034854		1489	CG3493 [Drosophila melanogaste	0.817	0.740	0.211	5.5e-36
DICTYBASE\|DDB_G0290503		1492	DDB_G0290503 [Dictyostelium di	0.830	0.750	0.197	6.5e-35
UNIPROTKB\|Q02224		2701	CENPE "Centromere-associated p	0.806	0.402	0.199	8.5e-34
ZFIN\|ZDB-GENE-041111-270		1398	eea1 "early endosome antigen 1	0.808	0.780	0.202	1.1e-33
UNIPROTKB\|J9P2D7		1364	EEA1 "Uncharacterized protein"	0.815	0.806	0.207	1.4e-33
UNIPROTKB\|F1PZD3		1411	EEA1 "Uncharacterized protein"	0.815	0.779	0.207	1.5e-33

TAIR\|locus:2045412 AT2G32240 "AT2G32240" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2587 (915.7 bits), Expect = 5.4e-269, P = 5.4e-269
 Identities = 604/1355 (44%), Positives = 824/1355 (60%)

Query:     1 MEEETQV-GSEVPVMKAVEDIDPIKETNGGLPQVXXXXXXXXXXNALDAEFIKVEKEALD 59
             MEE TQV  SEVPV+K   D+D +K  +  +  V             D EFIKVEKEA D
Sbjct:     1 MEEATQVTSSEVPVVKG--DVDDLKTADISVKAVNGEVPKEEKEEE-DGEFIKVEKEAFD 57

Query:    60 VKEVSHMXXXXXXXXDDKPSVVDRXXXXXXRELLEANEKVKELEIELERAATALKNAEIE 119
              K+ +          +++  V++R      REL E+ EK KELE+ELER A  LK  E E
Sbjct:    58 AKDDAEKADHVPV--EEQKEVIERSSSGSQRELHESQEKAKELELELERVAGELKRYESE 115

Query:   120 NARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAK 179
             N  L+D++L  KEKLEE+ KK  +LE+ QKK QE+IVE  E+++S+L ++++ALQ+ +AK
Sbjct:   116 NTHLKDELLSAKEKLEETEKKHGDLEVVQKKQQEKIVEGEERHSSQLKSLEDALQSHDAK 175

Query:   180 RKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRA 239
              KEL EVKEAFD L +E+E SR +L ELE  L+ S +EA+KFEELHKQS SHA+SESQ+A
Sbjct:   176 DKELTEVKEAFDALGIELESSRKKLIELEEGLKRSAEEAQKFEELHKQSASHADSESQKA 235

Query:   240 LEFERLLETANVSAKEVEGQMASLQEELKGLNXXXXXXXXXXXXXXRSNTEISAIQEELG 299
             LEF  LL++   SAKE+E +MASLQ+E+K LN               S  E++A+QEEL 
Sbjct:   236 LEFSELLKSTKESAKEMEEKMASLQQEIKELNEKMSENEKVEAALKSSAGELAAVQEELA 295

Query:   300 LSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVS 359
             LSK +LL+ EQ+ SS EALI  LTQEL+  KASES+ KEE+S L +L A  K  L AK+S
Sbjct:   296 LSKSRLLETEQKVSSTEALIDELTQELEQKKASESRFKEELSVLQDLDAQTK-GLQAKLS 354

Query:   360 ELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIAR 419
             E E I  KL EE+  +E +E++ K QE ++   NE+L +V KEKEALEA +A++T N+A 
Sbjct:   355 EQEGINSKLAEELKEKELLESLSKDQEEKLRTANEKLAEVLKEKEALEANVAEVTSNVAT 414

Query:   420 MKELCSELEEKLRNSDENFCKTDXXXXXXXXXXXXXXXXXXXXXXQHNETGAAAATASQR 479
             + E+C+ELEEKL+ SDENF KTD                       H+E G+AAA A+Q+
Sbjct:   415 VTEVCNELEEKLKTSDENFSKTDALLSQALSNNSELEQKLKSLEELHSEAGSAAAAATQK 474

Query:   480 NLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSXXXXXXXXXXXXKSSDSEREVREF 539
             NLELED++R+S++AAEEAKSQ++ELE +F AAEQ++            KSSD+ERE++E 
Sbjct:   475 NLELEDVVRSSSQAAEEAKSQIKELETKFTAAEQKNAELEQQLNLLQLKSSDAERELKEL 534

Query:   540 SEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERS 599
             SEK S+L TA++  EEEKKQ   QM +YK K ++LEL L QS+ R+SELEE+LRI  ++ 
Sbjct:   535 SEKSSELQTAIEVAEEEKKQATTQMQEYKQKASELELSLTQSSARNSELEEDLRIALQKG 594

Query:   600 AEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLE 659
             AE EDRAN +HQRSIELE L Q+S SK E    R+ +LELLL+ EKYRIQELEEQ+S LE
Sbjct:   595 AEHEDRANTTHQRSIELEGLCQSSQSKHEDAEGRLKDLELLLQTEKYRIQELEEQVSSLE 654

Query:   660 KKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKR 719
             KK  E EA SK Y  +V EL S LEAFQ ++SSLE AL +A + E+ELTE+LNA   EK+
Sbjct:   655 KKHGETEADSKGYLGQVAELQSTLEAFQVKSSSLEAALNIATENEKELTENLNAVTSEKK 714

Query:   720 KLQDTSNGYXXXXXXXXXXXXXXXXXXXMTQERLESIEKDLKAAGLRETDVMEKLKSAEE 779
             KL+ T + Y                   +TQ +LESIE DLKAAGL+E++VMEKLKSAEE
Sbjct:   715 KLEATVDEYSVKISESENLLESIRNELNVTQGKLESIENDLKAAGLQESEVMEKLKSAEE 774

Query:   780 QLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEG 839
              LEQ+ R +++AT++  ELE+LH+SL  +SE +LQ A+   TSRDSEA S +EKL++LEG
Sbjct:   775 SLEQKGREIDEATTKRMELEALHQSLSIDSEHRLQKAMEEFTSRDSEASSLTEKLRDLEG 834

Query:   840 QVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQXXXXXXXXXXXXXXXXX 899
             ++K YEEQLAEA+GK + LKE+L+    ++ + ES NE+L+++                 
Sbjct:   835 KIKSYEEQLAEASGKSSSLKEKLEQTLGRLAAAESVNEKLKQEFDQAQEKSLQSSSESEL 894

Query:   900 XXXXXXQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEAR 959
                   QLK K+ EL+ L+ S   EKE   ++L   +    +   + S  +E     E +
Sbjct:   895 LAETNNQLKIKIQELEGLIGSGSVEKETALKRLEEAIERFNQKETESSDLVEKLKTHENQ 954

Query:   960 VKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAXXXXXXXXXX 1019
             ++E +   HEA      R +E  +   K+  LE  I+    + +     +          
Sbjct:   955 IEEYKKLAHEASGVADTRKVELEDALSKLKNLESTIEELGAKCQGLEKESGDLAEVNLKL 1014

Query:  1020 XXXXXXXXXXVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEK 1079
                         ELQT+    E E         +   +L   +T + DL  +L++   EK
Sbjct:  1015 NLELANHGSEANELQTKLSALEAEKE-------QTANELEASKTTIEDLTKQLTSE-GEK 1066

Query:  1080 DETVEQLHASKK-AIEDLTQKLTSEVQGLQTQLEAQLNEKKATEETFKSEIESLKAQAAE 1138
              ++    H  +   +  + Q    E+Q +  +LE QL  + +  +T  SEIE L+A AAE
Sbjct:  1067 LQSQISSHTEENNQVNAMFQSTKEELQSVIAKLEEQLTVESSKADTLVSEIEKLRAVAAE 1126

Query:  1139 KFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQ 1198
             K  LE+  +ELE+ L  V+ Q KE VEN   +A+ K AEL SKL++H H   +R+ L EQ
Sbjct:  1127 KSVLESHFEELEKTLSEVKAQLKENVENA-ATASVKVAELTSKLQEHEHIAGERDVLNEQ 1185

Query:  1199 VIQLQRELQIAQTAIAEQRGADSQKDSEREAALKSSLEELGAKNKEAALLQNKVXXXXXX 1258
             V+QLQ+ELQ AQ++I EQ+ A SQK SE E+ALK S EE+ AK K     ++ V      
Sbjct:  1186 VLQLQKELQAAQSSIDEQKQAHSQKQSELESALKKSQEEIEAKKKAVTEFESMVKDLEQK 1245

Query:  1259 XXXXXXXXXXXXXDTPSEVKDAAEIKSRDIGSVISTPSKRKSKKLEAAAQTSSTRE---- 1314
                             +E  D   +KSRDI    S+P+KRKSKK   A+ +SS+      
Sbjct:  1246 VQLADAKTKE------TEAMDVG-VKSRDIDLSFSSPTKRKSKKKPEASLSSSSSSGNVT 1298

Query:  1315 IPTARADASPVMTFKFIIGVALVSVIIGITLGKRY 1349
              PT  A  S +MT K + GVAL+SVIIGI LG++Y
Sbjct:  1299 TPTQTASTSHLMTVKIVTGVALISVIIGIILGRKY 1333

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR\|locus:2207230 AT1G05320 "AT1G05320" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0286355 mhcA "myosin heavy chain" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0020503 CLIP-190 "Cytoplasmic linker protein 190" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0034854 CG3493 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q02224 CENPE "Centromere-associated protein E" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041111-270 eea1 "early endosome antigen 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P2D7 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PZD3 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_VI1490	hypothetical protein (1259 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1349
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-26
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-24
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-21
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-19
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-18
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-16
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-15
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-15
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-13
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-12
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-11
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	4e-11
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	5e-11
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-10
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-10
pfam01576		859	pfam01576, Myosin_tail_1, Myosin tail	5e-10
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-10
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	9e-10
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-09
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	1e-09
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	2e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-09
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-09
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-09
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	2e-08
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-08
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-08
PRK01156		895	PRK01156, PRK01156, chromosome segregation protein	3e-08
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-08
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-08
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	1e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	2e-07
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	2e-07
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-07
pfam13514		1118	pfam13514, AAA_27, AAA domain	3e-07
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	5e-07
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-07
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	9e-07
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
pfam13514		1118	pfam13514, AAA_27, AAA domain	2e-06
pfam13514		1118	pfam13514, AAA_27, AAA domain	3e-06
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	3e-06
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-06
COG5283		1213	COG5283, COG5283, Phage-related tail protein [Func	5e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-06
PRK11281		1113	PRK11281, PRK11281, hypothetical protein; Provisio	8e-06
COG1511		780	COG1511, COG1511, Predicted membrane protein [Func	8e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
PRK01156		895	PRK01156, PRK01156, chromosome segregation protein	3e-05
pfam05622		713	pfam05622, HOOK, HOOK protein	4e-05
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	5e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-05
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	7e-05
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	1e-04
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	1e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-04
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-04
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	3e-04
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	3e-04
TIGR03185		650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	3e-04
PRK11281		1113	PRK11281, PRK11281, hypothetical protein; Provisio	4e-04
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	4e-04
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	4e-04
PHA02562		562	PHA02562, 46, endonuclease subunit; Provisional	4e-04
PLN02939		977	PLN02939, PLN02939, transferase, transferring glyc	5e-04
COG4372		499	COG4372, COG4372, Uncharacterized protein conserve	5e-04
PRK01156		895	PRK01156, PRK01156, chromosome segregation protein	6e-04
pfam01496		707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	6e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-04
COG3264		835	COG3264, COG3264, Small-conductance mechanosensiti	7e-04
PRK11281		1113	PRK11281, PRK11281, hypothetical protein; Provisio	8e-04
TIGR00606		1311	TIGR00606, rad50, rad50	0.001
PRK09039		343	PRK09039, PRK09039, hypothetical protein; Validate	0.001
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.002
COG4372		499	COG4372, COG4372, Uncharacterized protein conserve	0.002
COG1269		660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.002
COG4942		420	COG4942, COG4942, Membrane-bound metallopeptidase	0.002
COG5022		1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	0.002
pfam01496		707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	0.003
COG4942		420	COG4942, COG4942, Membrane-bound metallopeptidase	0.003
TIGR03345		852	TIGR03345, VI_ClpV1, type VI secretion ATPase, Clp	0.003
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	0.004
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	0.004
PHA02562		562	PHA02562, 46, endonuclease subunit; Provisional	0.004
PRK04863		1486	PRK04863, mukB, cell division protein MukB; Provis	0.004

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

 Score =  117 bits (295), Expect = 2e-26
 Identities = 160/821 (19%), Positives = 307/821 (37%), Gaps = 55/821 (6%)

Query: 39   KEEEENALDAEFIKVEKEALDVKEVSHMAEPAAAEEDDKPSVVDRSSSSSSRELLEANEK 98
              EE   L  E  + E+E  ++       E    E   + S ++       +EL     +
Sbjct: 237  LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296

Query: 99   VKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEA 158
            +  LE + +     L N E +   L+  +   + KL+E  ++  ELE   ++ +E++   
Sbjct: 297  ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356

Query: 159  GEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEA 218
              +       ++E     E   ++L  ++     L L+I    + ++ LE +L+   D  
Sbjct: 357  EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416

Query: 219  RKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEGQMASLQEELKGLNEKISEKE 278
             + ++  +      + E     E +  LE      +E++ ++  L+E L+ L E   E E
Sbjct: 417  ERLQQ--EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE---ELE 471

Query: 279  KVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKE 338
            + E+ L  +  E++ +Q  L      L  L++        +  L +    +        E
Sbjct: 472  EAEQALDAAERELAQLQARLDS----LERLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527

Query: 339  EIS-------ALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSN 391
             IS       A++  L    + +  +        +   ++          L + +     
Sbjct: 528  LISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQ 587

Query: 392  VNEE------------LDKVSKEKEALEAAMADLTGNIARMKELCSELEE-KLRNSDENF 438
             N+                + K    L  A++ L G +  + +L + LE  K        
Sbjct: 588  GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRI 647

Query: 439  CKTDSLL---------------SQALANN---AELELKLKSLEEQHNETGAAAATASQRN 480
               D  L               S  L       ELE K++ LEE+  E   A A   +  
Sbjct: 648  VTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKEL 707

Query: 481  LELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFS 540
             ELE+ +    +  EE   Q+  L       E    +LE+++  +  + ++ E E+ E  
Sbjct: 708  EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767

Query: 541  EKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSA 600
            E+L +    L E E E ++L  Q+   K+++  L   L        EL  EL +  E +A
Sbjct: 768  ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL-------DELRAELTLLNEEAA 820

Query: 601  EDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEK 660
               +R     +R    E   +    ++E   + +  L   +E  +  I+ELE ++  L  
Sbjct: 821  NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN 880

Query: 661  KCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAA-ADEKR 719
            +    E        ++ EL+ EL   +++ S L   L+   +K  +L   L         
Sbjct: 881  ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940

Query: 720  KLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEE 779
              +  S  Y+  L EAE L   + +D    + RL+ +E  +K  G      +E+ +  +E
Sbjct: 941  LQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKE 1000

Query: 780  QLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANI 820
            + +  T   E  T     LE   E + RE+  + +D    +
Sbjct: 1001 RYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQV 1041

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|144972 pfam01576, Myosin_tail_1, Myosin tail	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|205692 pfam13514, AAA_27, AAA domain	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|205692 pfam13514, AAA_27, AAA domain	Back alignment and domain information

>gnl\|CDD\|205692 pfam13514, AAA_27, AAA domain	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|227608 COG5283, COG5283, Phage-related tail protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|236892 PRK11281, PRK11281, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224428 COG1511, COG1511, Predicted membrane protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|218661 pfam05622, HOOK, HOOK protein	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD	Back alignment and domain information

>gnl\|CDD\|236892 PRK11281, PRK11281, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|222878 PHA02562, 46, endonuclease subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups	Back alignment and domain information

>gnl\|CDD\|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>gnl\|CDD\|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|236892 PRK11281, PRK11281, hypothetical protein; Provisional	Back alignment and domain information

>gnl\|CDD\|129694 TIGR00606, rad50, rad50	Back alignment and domain information

>gnl\|CDD\|181619 PRK09039, PRK09039, hypothetical protein; Validated	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>gnl\|CDD\|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]	Back alignment and domain information

>gnl\|CDD\|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family	Back alignment and domain information

>gnl\|CDD\|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|222878 PHA02562, 46, endonuclease subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|235316 PRK04863, mukB, cell division protein MukB; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1349
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	100.0
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	100.0
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	99.97
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	99.97
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	99.91
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	99.9
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	99.9
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.79
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	99.78
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	99.78
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	99.76
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	99.76
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	99.75
KOG0962		1294	consensus DNA repair protein RAD50, ABC-type ATPas	99.7
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	99.7
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	99.64
PRK02224		880	chromosome segregation protein; Provisional	99.62
PRK02224		880	chromosome segregation protein; Provisional	99.61
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	99.55
PRK03918		880	chromosome segregation protein; Provisional	99.48
PRK03918		880	chromosome segregation protein; Provisional	99.4
KOG0996		1293	consensus Structural maintenance of chromosome pro	99.4
KOG0996		1293	consensus Structural maintenance of chromosome pro	99.12
PRK01156		895	chromosome segregation protein; Provisional	99.11
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	99.09
PRK01156		895	chromosome segregation protein; Provisional	99.09
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	99.04
KOG0933		1174	consensus Structural maintenance of chromosome pro	98.92
PRK04863		1486	mukB cell division protein MukB; Provisional	98.87
KOG0933		1174	consensus Structural maintenance of chromosome pro	98.82
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	98.7
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	98.69
KOG0964		1200	consensus Structural maintenance of chromosome pro	98.68
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	98.63
PRK04863		1486	mukB cell division protein MukB; Provisional	98.54
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	98.44
KOG0964		1200	consensus Structural maintenance of chromosome pro	98.39
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.39
KOG0971		1243	consensus Microtubule-associated protein dynactin	98.28
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	98.21
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	98.16
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	98.12
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	98.07
KOG4673		961	consensus Transcription factor TMF, TATA element m	98.06
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	98.04
PF00038		312	Filament: Intermediate filament protein; InterPro:	98.03
PRK04778		569	septation ring formation regulator EzrA; Provision	98.03
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	98.01
PF00038		312	Filament: Intermediate filament protein; InterPro:	97.97
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.94
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	97.94
KOG4643		1195	consensus Uncharacterized coiled-coil protein [Fun	97.83
KOG0963		629	consensus Transcription factor/CCAAT displacement	97.81
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	97.72
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	97.71
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.68
PRK04778		569	septation ring formation regulator EzrA; Provision	97.65
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	97.64
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	97.61
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	97.6
KOG4673		961	consensus Transcription factor TMF, TATA element m	97.6
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.56
PRK11637		428	AmiB activator; Provisional	97.54
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	97.51
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	97.51
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	97.44
PF13514		1111	AAA_27: AAA domain	97.37
PHA02562		562	46 endonuclease subunit; Provisional	97.28
KOG0962		1294	consensus DNA repair protein RAD50, ABC-type ATPas	97.1
PRK11637		428	AmiB activator; Provisional	97.06
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	97.06
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	97.04
PF07111		739	HCR: Alpha helical coiled-coil rod protein (HCR);	97.04
KOG0018		1141	consensus Structural maintenance of chromosome pro	97.04
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.02
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	97.0
PF13514		1111	AAA_27: AAA domain	97.0
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.9
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	96.9
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.85
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	96.74
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.71
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.62
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	96.52
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.49
PF05911		769	DUF869: Plant protein of unknown function (DUF869)	96.43
KOG4593		716	consensus Mitotic checkpoint protein MAD1 [Cell cy	96.43
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.21
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	96.17
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.15
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	96.14
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	96.14
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.11
KOG4593		716	consensus Mitotic checkpoint protein MAD1 [Cell cy	96.05
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	96.02
COG4942		420	Membrane-bound metallopeptidase [Cell division and	95.86
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	95.66
KOG0963		629	consensus Transcription factor/CCAAT displacement	95.63
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	95.63
KOG0018		1141	consensus Structural maintenance of chromosome pro	95.62
KOG0999		772	consensus Microtubule-associated protein Bicaudal-	95.54
PF14915		305	CCDC144C: CCDC144C protein coiled-coil region	95.48
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	95.36
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	95.17
KOG1003		205	consensus Actin filament-coating protein tropomyos	95.16
KOG1003		205	consensus Actin filament-coating protein tropomyos	95.06
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	95.05
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.96
KOG0995		581	consensus Centromere-associated protein HEC1 [Cell	94.89
PF15450		531	DUF4631: Domain of unknown function (DUF4631)	94.79
PF05911		769	DUF869: Plant protein of unknown function (DUF869)	94.67
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.63
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	94.39
COG4372		499	Uncharacterized protein conserved in bacteria with	94.28
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	94.26
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.21
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	94.17
PF14662		193	CCDC155: Coiled-coil region of CCDC155	94.02
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	93.99
COG4942		420	Membrane-bound metallopeptidase [Cell division and	93.82
PF14662		193	CCDC155: Coiled-coil region of CCDC155	93.34
PRK09039		343	hypothetical protein; Validated	93.28
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	93.27
PRK09039		343	hypothetical protein; Validated	93.22
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.21
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	92.95
COG4026		290	Uncharacterized protein containing TOPRIM domain,	92.85
TIGR00634		563	recN DNA repair protein RecN. All proteins in this	91.78
PF07111		739	HCR: Alpha helical coiled-coil rod protein (HCR);	91.72
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	91.28
COG3883		265	Uncharacterized protein conserved in bacteria [Fun	91.06
KOG0999		772	consensus Microtubule-associated protein Bicaudal-	90.92
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	90.57
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.51
PRK10246		1047	exonuclease subunit SbcC; Provisional	90.29
PF06008		264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	89.97
PF06008		264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	88.83
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	88.58
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	87.7
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	87.44
KOG0971		1243	consensus Microtubule-associated protein dynactin	87.08
TIGR03007		498	pepcterm_ChnLen polysaccharide chain length determ	87.08
PF12795		240	MscS_porin: Mechanosensitive ion channel porin dom	86.63
PRK10246		1047	exonuclease subunit SbcC; Provisional	86.55
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	86.49
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	86.21
COG5185		622	HEC1 Protein involved in chromosome segregation, i	86.1
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	85.81
PRK11281		1113	hypothetical protein; Provisional	85.77
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	85.23
PRK10869		553	recombination and repair protein; Provisional	85.12
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	84.81
TIGR01010		362	BexC_CtrB_KpsE polysaccharide export inner-membran	84.79
KOG0249		916	consensus LAR-interacting protein and related prot	84.74
PRK09841		726	cryptic autophosphorylating protein tyrosine kinas	84.5
PRK10929		1109	putative mechanosensitive channel protein; Provisi	84.43
KOG1853		333	consensus LIS1-interacting protein NUDE [Cytoskele	83.71
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	83.53
KOG1937		521	consensus Uncharacterized conserved protein [Funct	83.36
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	82.93
COG4477		570	EzrA Negative regulator of septation ring formatio	82.91
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	82.77
PF15397		258	DUF4618: Domain of unknown function (DUF4618)	82.7
PF10498		359	IFT57: Intra-flagellar transport protein 57 ; Inte	82.22
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	81.49
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	81.44
TIGR03017		444	EpsF chain length determinant protein EpsF. Sequen	81.41
PF13870		177	DUF4201: Domain of unknown function (DUF4201)	81.39
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	80.59
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	80.57

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

Probab=100.00  E-value=2.5e-61  Score=629.77  Aligned_cols=772  Identities=26%  Similarity=0.346  Sum_probs=703.4

Q ss_pred             hhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-------HHHHHHHHHH
Q 000693          115 NAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEE-------AKRKELAEVK  187 (1349)
Q Consensus       115 ~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~~~~~~~~~e~~~L~~~lq~e~-------e~~~~L~~~k  187 (1349)
                      +.+++|.++++++..+++.+.+.+...++++..+.++..           +++.|+.+|+++.       +++.++.+.+
T Consensus       835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~-----------e~~~l~~~l~~e~~~~~~aee~~~~~~~~k  903 (1930)
T KOG0161|consen  835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLE-----------EKNDLQEQLQAEKENLAEAEELLERLRAEK  903 (1930)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999999           9999999999998       5666666665


Q ss_pred             H--------------HhhhhhHHHHHHHHHHHHHHHHHHhhHHHHhhhHHhhhccCCchhhhhhhhhhHHhhHHhhhcch
Q 000693          188 E--------------AFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSA  253 (1349)
Q Consensus       188 e--------------~lee~~~~l~~~kkk~q~~~~~L~~~~~~~~~~eel~~e~~~~a~~~~qk~lelek~~~~~~~~a  253 (1349)
                      .              ..++.+..+...++++++.|++|+.++++         .+++     ++| +++|+.        
T Consensus       904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~---------~E~~-----~~k-~~~Ek~--------  960 (1930)
T KOG0161|consen  904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEE---------LELT-----LQK-LELEKN--------  960 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-----HHH-HHHHHH--------
Confidence            2              22888999999999999999999999999         8888     999 999999        


Q ss_pred             HHHHHHHHhHHHHHhhhhHhhhhhhh----HHHHHHhhhhhhhHHHHH-hccch------hhHHHHHHHHHhHHhhhhhh
Q 000693          254 KEVEGQMASLQEELKGLNEKISEKEK----VEEELKRSNTEISAIQEE-LGLSK------LQLLDLEQRFSSKEALITNL  322 (1349)
Q Consensus       254 ~~~e~~~~~l~ee~~~~~e~~~k~~k----~ee~~~~~~~~l~~~ee~-~~l~K------s~~~dlE~rl~~ee~~~~~~  322 (1349)
                       ++++++++|+++|.+++|.+++|.|    +|+++.++.++|++++++ ++|+|      ++|+|||.+|.++.+    .
T Consensus       961 -~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~----~ 1035 (1930)
T KOG0161|consen  961 -AAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKR----I 1035 (1930)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence             9999999999999999999999999    999999999999999999 99999      999999999999999    9


Q ss_pred             hHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHhhHHHHHhHHHHHHHHHhhHHHHHhHHHHHHH
Q 000693          323 TQELDLIKA----SESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDK  398 (1349)
Q Consensus       323 r~ele~~kr----~~~~~~e~~~~l~~~~~~~~~~l~~k~~el~~~~~k~eee~~~~~~l~~~I~elea~i~eLeeELe~  398 (1349)
                      |+++++.+|    ++..+++.+.++..+..++..+|.+++.|++.++++++++.+.+..+...|++++++|.+|.++|+.
T Consensus      1036 r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~ 1115 (1930)
T KOG0161|consen 1036 RMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEA 1115 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998888    8899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhcc
Q 000693          399 VSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQ  478 (1349)
Q Consensus       399 ~~~~r~~le~~~~DLe~~~~el~~~l~~LEeeL~~~~~e~~K~e~~ls~~~~~~~El~~~~k~lee~~~~~e~~~~~~~q  478 (1349)
                      .+..++++++.++||..++..++..|++............+|++.          |+..+++++++.+..|++.++.+|+
T Consensus      1116 er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~----------e~~~l~~~leee~~~~e~~~~~lr~ 1185 (1930)
T KOG0161|consen 1116 ERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREA----------EVQKLRRDLEEETLDHEAQIEELRK 1185 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            999999999999999995555555544444444444447799999          9999999999999999999999999


Q ss_pred             ch----HHHHHHHHH---hhHHHHHHHHH-----------HhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000693          479 RN----LELEDIIRA---SNEAAEEAKSQ-----------LRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFS  540 (1349)
Q Consensus       479 k~----~EL~~q~~~---~~~~~Ek~k~~-----------l~~l~~~~~~~e~k~keLE~Ql~elq~K~~e~erei~ele  540 (1349)
                      +|    .+|.+|+++   .|+.+++.|+.           +..+...+.+.+..++.++.++.+++.+++++.+.+.++.
T Consensus      1186 ~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~ 1265 (1930)
T KOG0161|consen 1186 KHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLT 1265 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99    899999999   88999999988           7788889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHhh-HHHH
Q 000693          541 EKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILN--------------QSNTRSSELEEELRITKERSAE-DEDR  605 (1349)
Q Consensus       541 ekiskLq~EL~elE~eLeele~klee~q~kIs~LEsqLk--------------~LqsrireLEEele~L~EeLeE-~e~r  605 (1349)
                      .+.+++..++..+.+.+++....+..+......+++++.              .+...++.+..+++.+++++++ .+++
T Consensus      1266 ~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~ 1345 (1930)
T KOG0161|consen 1266 AKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAK 1345 (1930)
T ss_pred             HHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999888              6778999999999999999999 7888


Q ss_pred             hhhhhhhhHHHHHhHHhhhhhhhhhhhh-HHHHHHH------------------------HHHHHHHHH-HHH-------
Q 000693          606 ANMSHQRSIELEDLFQTSHSKLEGTGKR-VNELELL------------------------LEAEKYRIQ-ELE-------  652 (1349)
Q Consensus       606 ~k~~rqrs~eLeell~~~k~kLEe~~~~-leelEe~------------------------LE~~K~Rlq-ELE-------  652 (1349)
                      .+..++.+....+ +..|+.++++.... ++++++.                        ++..+.+++ +++       
T Consensus      1346 ~~l~r~lsk~~~e-~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~ 1424 (1930)
T KOG0161|consen 1346 NELERKLSKANAE-LAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLE 1424 (1930)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            8888888877777 77888777765543 4444442                        555555544 222       


Q ss_pred             ---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHH
Q 000693          653 ---EQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKE---------------------RELT  708 (1349)
Q Consensus       653 ---eqis~LEKK~k~~eqeL~el~~~l~~Lk~ELE~leke~relEt~L~~~~ek~---------------------reL~  708 (1349)
                         ..+..++++++.|+..+++|......+..+++....+.+..++.+......+                     .++.
T Consensus      1425 ~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~ 1504 (1930)
T KOG0161|consen 1425 RSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLE 1504 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               5588999999999999999999999999999988888887777433333331                     1444


Q ss_pred             HHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 000693          709 ESLNAA-------ADEKRKLQDTSNGYNEKLAEAENLLE-----LLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKS  776 (1349)
Q Consensus       709 eqlee~-------e~~k~~LE~EieEl~~qLeElE~~Le-----~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~  776 (1349)
                      .+++++       +..++.++.++.+++.+|.|+++.++     .+|.++++.+.+.+ ++++|+.+   ++++++++++
T Consensus      1505 ~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e-~er~l~ek---~Ee~E~~rk~ 1580 (1930)
T KOG0161|consen 1505 EQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSE-IERRLQEK---DEEIEELRKN 1580 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHhh---hHHHHHHHHH
Confidence            444444       77789999999999999999999876     88999999999999 99999999   9999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHhhHhhhHHHHH---HHHHhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 000693          777 AEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAA-  852 (1349)
Q Consensus       777 ~~~~l~~~~~~Le~e~~~~~e~~~~~~~~~kk~E~~L~e---al~~~~~~~~E~~~l~k~L~~lq~qik~~q~~~~ea~-  852 (1349)
                      |+++|++++++|+++++.++++.    +.+||||+||++   +++++|+..++++   |+|++++.|+++||.++++++ 
T Consensus      1581 ~~~~i~~~q~~Le~E~r~k~e~~----r~KKkle~di~elE~~ld~ank~~~d~~---K~lkk~q~~~k~lq~~~e~~~~ 1653 (1930)
T KOG0161|consen 1581 LQRQLESLQAELEAETRSKSEAL----RSKKKLEGDINELEIQLDHANKANEDAQ---KQLKKLQAQLKELQRELEDAQR 1653 (1930)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHH----hhhhhhhcchHHHHHHHHHHHHhhHHHH---HHHHhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999    999999999999   9999999999999   999999999999999999877 


Q ss_pred             -------------HHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhHHHHHHHhh
Q 000693          853 -------------GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLD  919 (1349)
Q Consensus       853 -------------~k~~~l~~Ele~~~~~l~~~E~~i~eLe~El~eleee~~~L~sele~l~~e~~kLeski~~LEseL~  919 (1349)
                                   +|+..+.+|++++...+.+++|.++.++.++.++.+.++.+.+++..+...+++|+.++..++++|.
T Consensus      1654 ~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~ele 1733 (1930)
T KOG0161|consen 1654 AREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELE 1733 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Confidence                         8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000693          920 SAISEKEATGQQLASHMNTVTELTEQHS  947 (1349)
Q Consensus       920 ~~vsei~~l~eEik~le~qIe~Ls~els  947 (1349)
                      ...++...+.++++++..+...+..++.
T Consensus      1734 e~~~~~~~~~Er~kka~~~a~~~~~el~ 1761 (1930)
T KOG0161|consen 1734 EEQSELRAAEERAKKAQADAAKLAEELR 1761 (1930)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhHHHHH
Confidence            9999999999999999999999998883

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants	Back alignment and domain information

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14915 CCDC144C: CCDC144C protein coiled-coil region	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]	Back alignment and domain information

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF15450 DUF4631: Domain of unknown function (DUF4631)	Back alignment and domain information

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]	Back alignment and domain information

>TIGR00634 recN DNA repair protein RecN	Back alignment and domain information

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PRK10246 exonuclease subunit SbcC; Provisional	Back alignment and domain information

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells	Back alignment and domain information

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily	Back alignment and domain information

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain	Back alignment and domain information

>PRK10246 exonuclease subunit SbcC; Provisional	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PRK11281 hypothetical protein; Provisional	Back alignment and domain information

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

>PRK10869 recombination and repair protein; Provisional	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family	Back alignment and domain information

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]	Back alignment and domain information

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional	Back alignment and domain information

>PRK10929 putative mechanosensitive channel protein; Provisional	Back alignment and domain information

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PF15397 DUF4618: Domain of unknown function (DUF4618)	Back alignment and domain information

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>TIGR03017 EpsF chain length determinant protein EpsF	Back alignment and domain information

>PF13870 DUF4201: Domain of unknown function (DUF4201)	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1349
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-24
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-22
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-17
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-21
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-19
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	5e-19
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	5e-19
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-19
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-18
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	5e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	7e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-16
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	5e-16
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	9e-16
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	9e-16
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-15
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	5e-15
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-13
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	5e-13
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-10
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-12
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-11
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-11
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-09
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-06
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-06
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	8e-05
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-04
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	9e-04
3ghg_C		411	Fibrinogen gamma chain; triple-stranded coiled coi	3e-06
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	9e-06
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-05
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	7e-05
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-04
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	6e-04
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	8e-05
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	5e-04
1sjj_A		863	Actinin; 3-helix bundle, calponin homology domain,	1e-04
1sjj_A		863	Actinin; 3-helix bundle, calponin homology domain,	4e-04
1w1w_A		430	Structural maintenance of chromosome 1; cohesin, c	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score =  109 bits (272), Expect = 5e-24
 Identities = 111/706 (15%), Positives = 219/706 (31%), Gaps = 221/706 (31%)

Query: 88  SSRELLEANEK--VKELEI----ELERAATALKNAEIENARLQDDVLITKEKLEESGKKC 141
             +++L   E   V   +     ++ ++   L   EI      D ++++K+ +  + +  
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEI------DHIIMSKDAVSGTLRLF 68

Query: 142 EELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGLSLEIEQSR 201
             L   Q++  ++ VE   + N +   +   ++  E ++  +               + R
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKF--LMSPIK-TEQRQPSMMTR---------MYIEQR 116

Query: 202 SRLQELEHKL-QCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSAKEVEGQM 260
            RL        + +V   + + +L            ++AL    L    NV    ++G +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKL------------RQALL--ELRPAKNVL---IDG-V 158

Query: 261 ASLQEELKG-----LNEKISEKEKVEEE---------LKRSNTEISAIQEELGLSKLQLL 306
                   G     +   +    KV+ +         LK  N+  + ++         L 
Sbjct: 159 L-------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--------MLQ 203

Query: 307 DLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAK---VSELED 363
            L  +         N T   D     + +     + L  LL   K   +     V  L +
Sbjct: 204 KLLYQIDP------NWTSRSDHSSNIKLRIHSIQAELRRLL---KSKPYENCLLV--LLN 252

Query: 364 IKLKLQEEVNARESVEA-------VLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGN 416
                   V   ++  A       +L T+  QV++    L   +    +L+     LT  
Sbjct: 253 --------VQNAKAWNAFNLSCKILLTTRFKQVTDF---LSAATTTHISLDHHSMTLTP- 300

Query: 417 IARMKELCSE-LEEKLRNSDENFCKTDSLLSQALANNAELELKL--KSLEEQHNETGAAA 473
              +K L  + L+          C+   L  + L  N    L +  +S+ +         
Sbjct: 301 -DEVKSLLLKYLD----------CRPQDLPREVLTTNP-RRLSIIAESIRDGLA------ 342

Query: 474 ATAS---QRNLE-LEDIIRASNEAAEEAKSQLRELEPRFIAAEQR-----------SVEL 518
            T       N + L  II +S          L  LEP    AE R           S  +
Sbjct: 343 -TWDNWKHVNCDKLTTIIESS----------LNVLEP----AEYRKMFDRLSVFPPSAHI 387

Query: 519 EQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELIL 578
              L L  +     + +V     KL + S   K+ +E    +     + K K+   E  L
Sbjct: 388 PTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-EYAL 445

Query: 579 NQSNTRSSELEEELRITKERSAEDEDRANMS---------HQRSIELE---DLFQTSH-- 624
           ++S      + +   I K   ++D     +          H ++IE      LF+     
Sbjct: 446 HRS------IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 625 -----SKLEGTGKRVNE----LELLLEAEKYR--IQE----LEEQISKLEK---KCEEAE 666
                 K+       N     L  L + + Y+  I +     E  ++ +     K EE  
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE-- 557

Query: 667 AGSKQYSDKVCELASELEAFQARTSSLEVALQ-----MANDKEREL 707
                   K  +L             L +AL      +  +  +++
Sbjct: 558 ---NLICSKYTDL-------------LRIALMAEDEAIFEEAHKQV 587

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245	Back alignment and structure

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863	Back alignment and structure

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863	Back alignment and structure

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00