Citrus Sinensis ID: 000705

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340--

MTRNFVFPQNLQALEEQEDEEHDGNRLYAQNPISITSMHPSELVEFVKGVSFDLSDKELFCIEEQDLFDRVYSLIRNFSSLSPSCKLSLVESLRSNLSVLLPNVDSLSRVSQSQDNETPVLDRLSSHRNAFKIYTFFLISIVLAQEFNISSNNNPKVTASTRKKQPVNSWNWDPQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQQESLTDSCLPLADEGIADKDSSVPDVGNLEQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQDKSIYEAVENAFITIYVRKSPVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSINAELGLAASEDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHALSEDSVMDNFRNIINKSKKFAKPEVKVCIEEFEEKLNKYHTEKKDQEATTRNAQIHQQKVNTMGNSVADRNAGEESAESDISEDDESIGPSAKRTNQYINNISKSQSDGSEEHSGASSEVTETETGDIEVQSPRVMMKGTKSRAKKSTLKDVKGTISGSNRRNIRSKQR

ccccccccccHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHccHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

ccccEEEcccHHHHHccccccEEEEEEEEcccccHHHccHHHHHHHHHHHcHcHHcccccEEcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHcccccHHHHHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHccccHHHHcccHHHHHHHHHHHcccccccccccHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHEEEEHHHHHHHcccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHccEEEccHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHcHHcccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

mtrnfvfpqnlqaleeqedeehdgnrlyaqnpisitsmhpsELVEFVkgvsfdlsdkelfCIEEQDLFDRVYSLIRnfsslspscKLSLVESLRSNLSVllpnvdslsrvsqsqdnetpvLDRLSSHRNAFKIYTFFLISIVLAQEfnissnnnpkvtastrkkqpvnswnwdpqrgRILNLIANSLeinlpllfgssdpdenyLSFVVRNAFLMFEnatllkdadtKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGaekkyadgsLATYLIREIgrtnpkayvkdtvgAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDiegeasskSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLqhnpfgpqlriASFEATLDEYRKKLnglepdihsesitdglpsdrgtcngdgevddlNAEVVVQEQQEsltdsclpladegiadkdssvpdvgnlEQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQDKSIYEAVENAFITIYVRKSPVETAKNLLNLAidsnigdqAAMEFIVGTLVSKGDVSMSTISALWDFFcfnvsgttpekSRAALSVLCMAAKSSAAVLGSHLQDIIDIGfgrwakvePLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLItgfwlpdniwytAADKAISAIytihptpetLAVDLVKKSLSAVFDyvggeephngidcvgtsmptsvqvsKLGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKEkmiaddqnihsnnntngdlpkdtsinaelglaasedakLDTLSEKAEKEIIsggssqknlIGHCASFLSKFCRnfslmnkypELQASAMLALCRFMIIDADYCDANLQLLFTVVesspseivrsnCTIALGDlavrfpnllepwtenmyarlkdpsmavRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELskkgnnpiynllPDILGKlcnqnlkteSFCNIMQLLIGFIKKDKQMEALVEKLCNRfsgvtdirQWEYISYCLSQLAFTEKGMKKLIESFKTYEhalsedsvMDNFRNIINKSKKFAKPEVKVCIEEFEEKLNKYHTEKKDQEATTRNAQIHQQKVNtmgnsvadrnageesaesdiseddesigpsakrtNQYINNIsksqsdgseehsgassevtetetgdievqsprvmmkgtksrakkstlkdvkgtisgsnrrnirskqr

mtrnfvfpqnlQALEEQEDEEHDGNRLYAQNPISITSMHPSELVEFVKGVSFDLSDKELFCIEEQDLFDRVYSLIRNFSSLSPSCKLSLVESLRSNLSVLLPNvdslsrvsqsqdnetpvLDRLSSHRNAFKIYTFFLISIVLAQEFNISsnnnpkvtastrkkqpvnswnwdpqRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIReigrtnpkayvkdtvgaENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKdiegeassksvrlrTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLDEYRKKLnglepdihsesitdglpsdRGTCNGDGEVDDLNAEVVVQEQQESLTDSCLPLADEGIADKDSSVPDVGNLEQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQDKSIYEAVENAFITIYVRKSPVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKEKmiaddqnihsnnntngdlpKDTSINAELGLAASEDAKLDTLSEKAEKEIisggssqknlIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHALSEDSVMDNFRNIINKskkfakpevKVCIEEFEEKLNKYHTEKKDQEATTRNAQIhqqkvntmgnsvADRNAGeesaesdiseddesigpsakrtnQYINNISksqsdgseehsgassevtetetgdievqsprvmmkgtksrakkstlkdvkgtisgsnrrnirskqr

MTRNFVFPQNLQALEEQEDEEHDGNRLYAQNPISITSMHPSELVEFVKGVSFDLSDKELFCIEEQDLFDRVYSLIRNFSSLSPSCKLSLVESLRSNLSVLLPNVDSLSRVSQSQDNETPVLDRLSSHRNAFKIYTFFLISIVLAQEFNISSNNNPKVTASTRKKQPVNSWNWDPQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQQESLTDSCLPLADEGIADKDSSVPDVGNLEQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQDKSIYEAVENAFITIYVRKSPVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSINAELGLAASEDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHALSEDSVMDNFRNIINKSKKFAKPEVKVCIEEFEEKLNKYHTEKKDQEATTRNAQIHQQKVNTMGNSVADRNageesaesdiseddesigPSAKRTNQYINNISKSQSDGSEEHSGASSEVTETETGDIEVQSPRVMMKGTKSRAKKSTLKDVKGTISGSNRRNIRSKQR

**********************************ITSMHPSELVEFVKGVSFDLSDKELFCIEEQDLFDRVYSLIRNFSSLSPSCKLSLVESLRSNLSVLLP************************HRNAFKIYTFFLISIVLAQEFNI******************NSWNWDPQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEG******VRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLDEYRK**************************************************************************TRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQDKSIYEAVENAFITIYVRKSPVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQLVYIESCVCEIRKQKI*************************************************************NLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHALSEDSVMDNFRNIINKSKKFAKPEVKVCIEEFE****************************************************************************************************************************************

MTRNFVFPQNLQALEEQEDEEHDGNRLYAQNPISITSMHPSELVEFVKGVSFDLSDKELFCIEEQDLFDRVYSLIRNFSSLSPSCKLSLVESLRSNLSVLLPNVD******************LSSHRNAFKIYTFFLISIVL*******************************QRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTN**********AENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVA*******************KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLDEYRKK***********************************************************************EQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQDKSIYEAVENAFITIYVRKSPVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNV*******SRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLS***********GSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDLVKKSLSAV**************************SKLGRYLFILSHIAMNQLVYIESCVCEI******************************************EDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSL*NKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHALSEDSVMDNFRNIINK**********VCIEEFEEKLN************************************************************************************************************************************

MTRNFVFPQNLQALE********GNRLYAQNPISITSMHPSELVEFVKGVSFDLSDKELFCIEEQDLFDRVYSLIRNFSSLSPSCKLSLVESLRSNLSVLLPNVDS**************LDRLSSHRNAFKIYTFFLISIVLAQEFNISSNNNP************NSWNWDPQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQQESLTDSCLPLADEGIADKDSSVPDVGNLEQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQDKSIYEAVENAFITIYVRKSPVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSINAELGLAASEDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHALSEDSVMDNFRNIINKSKKFAKPEVKVCIEEFEEKLNKYHT***********AQIHQQKVNTMGNSVA********************GPSAKRTNQYINNIS************************IEVQSPRVM*****************GTISGSN*********

*TRNFVFPQNLQALEEQEDEEHDGNRLYAQNPISITSMHPSELVEFVKGVSFDLSDKELFCIEEQDLFDRVYSLIRNFSSLSPSCKLSLVESLRSNLSVLLPNVDSLSRVSQSQDNETPVLDRLSSHRNAFKIYTFFLISIVLAQEFNISSN****************SWNWDPQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLDEYRKKLNGLEPDI*******************GEVDDLNAEVV*************************SVPDVGNLEQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQDKSIYEAVENAFITIYVRKSPVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDY******************TSVQVSKLGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKE***********************SINAELGLAASEDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHALSEDSVMDNFRNIINKSKKFAKPEVKVCIEEFEEKLNKYHTEK******************************************************************************************************************************

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MTRNFVFPQNLQALEEQEDEEHDGNRLYAQNPISITSMHPSELVEFVKGVSFDLSDKELFCIEEQDLFDRVYSLIRNFSSLSPSCKLSLVESLRSNLSVLLPNVDSLSRVSQSQDNETPVLDRLSSHRNAFKIYTFFLISIVLAQEFNISSNNNPKVTASTRKKQPVNSWNWDPQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQQESLTDSCLPLADEGIADKDSSVPDVGNLEQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQDKSIYEAVENAFITIYVRKSPVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSINAELGLAASEDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHALSEDSVMDNFRNIINKSKKFAKPEVKVCxxxxxxxxxxxxxxxxxxxxxTRNAQIHQQKVNTMGNSVADRNAGEESAESDISEDDESIGPSAKRTNQYINNISKSQSDGSEEHSGASSEVTETETGDIEVQSPRVMMKGTKSRAKKSTLKDVKGTISGSNRRNIRSKQR

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1342	2.2.26 [Sep-21-2011]
Q9YHY6		1364	Condensin complex subunit	N/A	no	0.555	0.546	0.315	1e-106
Q8K2Z4		1392	Condensin complex subunit	yes	no	0.566	0.545	0.320	1e-105
Q15021		1401	Condensin complex subunit	yes	no	0.555	0.532	0.313	1e-105
Q06156		1176	Condensin complex subunit	yes	no	0.705	0.805	0.256	3e-84
O94679		1158	Condensin complex subunit	yes	no	0.790	0.916	0.253	1e-82

>sp\|Q9YHY6\|CND1_XENLA Condensin complex subunit 1 OS=Xenopus laevis GN=ncapd2 PE=1 SV=1	Back alignment and function desciption

 Score =  386 bits (992), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 254/806 (31%), Positives = 434/806 (53%), Gaps = 61/806 (7%)

Query: 537  GNLEQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGA 596
             ++++   LV  L     F+  +   +  + ++M  ++ S V+  I   +   QF +  A
Sbjct: 596  SDMDKQEMLVQYLSDAHHFALKIEEAIDVISKMMYETAVSVVQEVIEFFVTVSQFGVSQA 655

Query: 597  EACLHKMLPLVLSQDKSIYEAVENAFITIYV-------RKSPVETAKNLLNLAIDSNIGD 649
               + +MLPLV S++  + EAV +A+  +Y+       R       ++L  L +DS+ G 
Sbjct: 656  LLGVRRMLPLVWSKEPGVREAVLSAYRRLYLSSNGESERVKAQALVRSLSLLMVDSSAGI 715

Query: 650  QAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVLG 709
               +E IV   V KGD+  S I  LW+ F      +  E+ RAA+ +L M  +    ++ 
Sbjct: 716  LQCLEEIVSEFVQKGDIHPSVIQLLWEKFTQKSPCSEFER-RAAVMLLGMMTRGQPEIVM 774

Query: 710  SHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKL-------LLSYGSRVFATL- 761
            S+L  ++ +G G   + +  LAR  C  I +++   K+ L        L     +F  L 
Sbjct: 775  SNLDTLVSVGLGEQVQKDYQLAREVCNCILKITDSQKQTLGKSTEPFRLPKDHSLFVCLT 834

Query: 762  ESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGGEEPHNGI 821
            E++  G  L    W    + A+  +Y +   PE +  +++ +    V D   G +  + +
Sbjct: 835  EAVAGGIGLSGLHWLPFKETAVRLVYELGEEPEEICSEILLRCSQNVLD---GHQTQDEV 891

Query: 822  DCVGTSMPTSVQVSKLGRYLFILSHIAMNQLVYIESCV-CEIRKQKIKKEKMIADDQNIH 880
              V   +        L   L +   +A+ Q+V++E  V  E+R++++ KE+  A+     
Sbjct: 892  PNVPAFL--------LTHLLSLAGDVALQQVVHLERAVSAELRRRRVLKEEQEAEKVGKQ 943

Query: 881  SNNNTNGDLPKDTSINAELGL--AASEDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFL 938
              +  N     ++++  ELGL  A+++D + + + +  + E++ G         + ++FL
Sbjct: 944  RKSKAN-----ESTMEEELGLVGASADDIEAELIRKICDTELLGGQQ-------YLSAFL 991

Query: 939  SKFCRNFSLMNKY--PELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNC 996
                R  +   +Y  P+L   A LAL ++M+I +D+CD +L+LLFT++E SP   VRSN 
Sbjct: 992  PLILRICNNPGRYSDPDLCTVATLALAKYMMISSDFCDTHLRLLFTLLEKSPLPSVRSNI 1051

Query: 997  TIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMA 1056
             IALGDL++RFPNL+EPWT N+YARL+DPS  VRK A +V++HLIL DM+KVKG ++EMA
Sbjct: 1052 MIALGDLSIRFPNLIEPWTPNLYARLRDPSREVRKTAGMVMTHLILKDMVKVKGQVSEMA 1111

Query: 1057 IRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQN--LKTESFCNIMQLLI 1114
            + + + DQ IS LA+ FF+ELS KGN  +YNLLPDI+ +L + +  ++ E+F  IM+ L+
Sbjct: 1112 VLLIESDQEISALARNFFNELSNKGNA-VYNLLPDIISRLSDPDCGVEEEAFRTIMKQLL 1170

Query: 1115 GFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHAL 1174
             +I KDKQ E+LVEK+C+RF      RQW  +++CLS L F+EKG++K+ + F  Y   L
Sbjct: 1171 SYITKDKQTESLVEKMCHRFRTARTERQWRDLAHCLSLLPFSEKGLRKMQDCFDCYGDKL 1230

Query: 1175 SEDSVMDNFRNIINKSKKFAKPEVKVCIEEFEEKLNKYHTEKKDQEATTR--NAQIHQQK 1232
            S+++V ++F   + K ++ AKPE+K  I+EFE+KL++ H +  +        +A+   Q 
Sbjct: 1231 SDEAVYNSFLTTVAKMRRGAKPELKALIDEFEQKLSRCHNKGLENMDVPEEPSAESDAQP 1290

Query: 1233 VNTMGNSVADRNAGEESAESDISEDDESIGPSAKRTNQYINNISKSQSDGSEEHSGASSE 1292
                   +A  N  +  +E D     ++  P A R ++    ++ S    S+E S   +E
Sbjct: 1291 PKAKRPPLASVNVKKGKSEDDF----QTPKPPASRKSRRKVAVNFS----SDEESDLEAE 1342

Query: 1293 VTETETGDIEVQSPRVMMKGTKSRAK 1318
            ++E ET     ++P  + +  +SRAK
Sbjct: 1343 LSEAETP----KNPTPIRRTARSRAK 1364

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. May target the condensin complex to DNA via its C-terminal domain.
Xenopus laevis (taxid: 8355)

>sp\|Q8K2Z4\|CND1_MOUSE Condensin complex subunit 1 OS=Mus musculus GN=Ncapd2 PE=1 SV=2	Back alignment and function description

>sp\|Q15021\|CND1_HUMAN Condensin complex subunit 1 OS=Homo sapiens GN=NCAPD2 PE=1 SV=3	Back alignment and function description

>sp\|Q06156\|CND1_YEAST Condensin complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCS4 PE=1 SV=1	Back alignment and function description

>sp\|O94679\|CND1_SCHPO Condensin complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cnd1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1342
359481908		1346	PREDICTED: condensin complex subunit 1-l	0.982	0.979	0.766	0.0
224089995		1334	condensin complex components subunit [Po	0.988	0.994	0.767	0.0
255576542		1346	condensin, putative [Ricinus communis] g	0.994	0.991	0.746	0.0
356500298		1316	PREDICTED: condensin complex subunit 1-l	0.970	0.989	0.731	0.0
334186044		1415	condensin complex subunit 1 [Arabidopsis	0.936	0.888	0.732	0.0
145339600		1396	condensin complex subunit 1 [Arabidopsis	0.936	0.900	0.732	0.0
449437735		1321	PREDICTED: condensin complex subunit 1-l	0.963	0.978	0.729	0.0
6911876		1439	putative protein [Arabidopsis thaliana]	0.936	0.873	0.716	0.0
297739914		1290	unnamed protein product [Vitis vinifera]	0.931	0.968	0.702	0.0
297820496		1325	binding protein [Arabidopsis lyrata subs	0.944	0.956	0.725	0.0

>gi\|359481908\|ref\|XP_003632691.1\| PREDICTED: condensin complex subunit 1-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 2116 bits (5482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1026/1339 (76%), Positives = 1167/1339 (87%), Gaps = 20/1339 (1%)

Query: 1    MTRNFVFPQNLQALEEQEDEEHDGNRLYAQNPISITSMHPSELVEFVKGVSFDLSDKELF 60
            M  +F+FP NLQALE   +E HDG RL AQNPI I+S+  SEL EFV+GVSFDLSDKELF
Sbjct: 1    MAPSFIFPPNLQALE---NESHDG-RLCAQNPIDISSLRSSELEEFVRGVSFDLSDKELF 56

Query: 61   CIEEQDLFDRVYSLIRNFSSLSPSCKLSLVESLRSNLSVLLPNVDSLSRVSQSQDNETPV 120
            C+EEQD+FDRVYSLI+ FS+L+PSCKL+LVESLRSNLSVLLPNVDSLSRVSQ   ++ P+
Sbjct: 57   CVEEQDVFDRVYSLIKGFSTLTPSCKLNLVESLRSNLSVLLPNVDSLSRVSQDHADDVPI 116

Query: 121  LDRLSSHRNAFKIYTFFLISIVLAQEFNISSNNNPKVTASTRKKQPVNSWNWDPQRGRIL 180
            LDR++SHRNAFKIYTFFL++I+L +E NI  N + K T S+RKKQP++SWNW+PQRGRIL
Sbjct: 117  LDRVASHRNAFKIYTFFLLNIILIEESNIGVNKS-KATLSSRKKQPIHSWNWEPQRGRIL 175

Query: 181  NLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACAT 240
            NLIANSLEINLPLLFGSSDPDENYLSF+V+N F MFENA LLKD++TKDALCRIIG CAT
Sbjct: 176  NLIANSLEINLPLLFGSSDPDENYLSFIVKNVFSMFENAILLKDSETKDALCRIIGTCAT 235

Query: 241  KYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVK 300
            KYHY+ QSCASI+HL+HK+DFV+  MADAVA AEKKYADGSLA+ LIREIGRTNPK YVK
Sbjct: 236  KYHYMAQSCASILHLMHKHDFVITPMADAVASAEKKYADGSLASSLIREIGRTNPKDYVK 295

Query: 301  DTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDI 360
            DTVGAENIGRFLVELADRLPKLISTNIG+L+ HFGGESYKIRNALVGVLGKLV KAFK++
Sbjct: 296  DTVGAENIGRFLVELADRLPKLISTNIGLLVPHFGGESYKIRNALVGVLGKLVMKAFKNV 355

Query: 361  EGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEV 420
            EGE SSKS++LRTKQAMLEILLERCRDVSAYTRSRVLQVW ELCEEHSVSIG+WNEVA V
Sbjct: 356  EGEVSSKSIQLRTKQAMLEILLERCRDVSAYTRSRVLQVWGELCEEHSVSIGMWNEVAAV 415

Query: 421  AAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLDEYRKKLNGLEPDIHSES 480
            AAGRLEDKSAIVRKSALNLL+MMLQHNPFGPQLRIASFEATL++Y+KKLN L+P++ SES
Sbjct: 416  AAGRLEDKSAIVRKSALNLLIMMLQHNPFGPQLRIASFEATLEQYKKKLNELQPNLASES 475

Query: 481  ITDGLPSDRGTCNGDGEVDDLNAEVVVQ---EQQESLTDSCLPLADEGIADKDSSVPDVG 537
            + DGLPSD  TCNGDGEVD  N E V Q    QQ+SLTDSCLP   EGI + DS VPDVG
Sbjct: 476  VLDGLPSDGDTCNGDGEVDSGNEEEVGQVAKGQQDSLTDSCLPHTAEGIVENDSPVPDVG 535

Query: 538  NLEQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAE 597
            NLEQTRALVASLEAGLRFSKCVS+TMPTLVQLMASSSA+DVENTILLLMRCKQFQ+DG+E
Sbjct: 536  NLEQTRALVASLEAGLRFSKCVSATMPTLVQLMASSSATDVENTILLLMRCKQFQVDGSE 595

Query: 598  ACLHKMLPLVLSQDKSIYEAVENAFITIYVRKSPVETAKNLLNLAIDSNIGDQAAMEFIV 657
            ACL KM PLV SQDKS YEAVENAF+TIY+RKS +ETAKNLLNLAIDSNIGD AA+EFIV
Sbjct: 596  ACLRKMFPLVFSQDKSTYEAVENAFVTIYIRKSSMETAKNLLNLAIDSNIGDLAALEFIV 655

Query: 658  GTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIID 717
            G LVSKGD+S S ISALWDFFCFNVSGTT E+SR ALSVLCMAAK S  +L SHLQDIID
Sbjct: 656  GALVSKGDISTSMISALWDFFCFNVSGTTAEQSRGALSVLCMAAKLSHGILVSHLQDIID 715

Query: 718  IGFGRWAKVEPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPDNIWYT 777
            IGFGRWAKVEPLLARTAC+A+QRLS+ DKKKLL S G+R+F  LESLIT FWLP+NIWY 
Sbjct: 716  IGFGRWAKVEPLLARTACVALQRLSEADKKKLLSSNGTRIFGILESLITSFWLPENIWYA 775

Query: 778  AADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSKL 837
            AADKAI AIY IHPTPETLA DLV+KSLS+VFD  GG+E  N I+  G+S+ ++VQV+KL
Sbjct: 776  AADKAIGAIYVIHPTPETLASDLVQKSLSSVFDCGGGDELQNDIENGGSSVLSTVQVTKL 835

Query: 838  GRYLFILSHIAMNQLVYIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSINA 897
             RYLFI+SH+AMNQL YIESCV  I+KQK KK+K+ A+ Q +  N   + D+  +  INA
Sbjct: 836  SRYLFIVSHVAMNQLTYIESCVRRIQKQKAKKDKIDAESQYV-PNGMASADV--ENGINA 892

Query: 898  ELGLAASEDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQAS 957
            ELGLAASEDA LD+LSE+AEKEIISGGS++KNLIGHCA FLSK CRNFSLM KYPELQAS
Sbjct: 893  ELGLAASEDAILDSLSERAEKEIISGGSAEKNLIGHCAPFLSKLCRNFSLMQKYPELQAS 952

Query: 958  AMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTEN 1017
             MLALCRFMIID ++C+ANLQLLFTVVE++PSE VRSNCTI LGDLAVRFPNLLEPWTEN
Sbjct: 953  GMLALCRFMIIDGNFCEANLQLLFTVVENAPSETVRSNCTIVLGDLAVRFPNLLEPWTEN 1012

Query: 1018 MYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHEL 1077
            MYARL+D S++VRKNAVLVLSHLILNDMMKVKGYINEMA+R+EDED+RISNLAKLFFHEL
Sbjct: 1013 MYARLQDSSVSVRKNAVLVLSHLILNDMMKVKGYINEMAMRLEDEDERISNLAKLFFHEL 1072

Query: 1078 SKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGV 1137
            SKKG+NPIYNLLPDILGKLCN+NLK ESFCNIMQ LIG IKKDKQME+LVEKLCNRFSGV
Sbjct: 1073 SKKGSNPIYNLLPDILGKLCNRNLKRESFCNIMQFLIGSIKKDKQMESLVEKLCNRFSGV 1132

Query: 1138 TDIRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHALSEDSVMDNFRNIINKSKKFAKPE 1197
            TD+RQWEY+SYCLSQLAFTEKGMKKL+ESFKTYEHALSEDSVMD+F+NII+KSKKFAKPE
Sbjct: 1133 TDVRQWEYVSYCLSQLAFTEKGMKKLMESFKTYEHALSEDSVMDHFKNIISKSKKFAKPE 1192

Query: 1198 VKVCIEEFEEKLNKYHTEKKDQEATTRNAQIHQQKVNTMGNSVADRNAGEESAESDISED 1257
            +K CIEEFEEKLNK+H E+K+QE T RNAQ+HQQKV ++ + + D +  EE  E+D+ ED
Sbjct: 1193 LKSCIEEFEEKLNKFHVERKEQEVTARNAQVHQQKVGSLESLMVDGSTAEECQEADVVED 1252

Query: 1258 DESIGPSAKRTNQYINNISKSQSDGSEEHSGASSEVTETETGDIEVQSPRVMM------- 1310
             E I PS K   Q +N++SKS++   EE+S  SSEV E+E G+ E+QS +++        
Sbjct: 1253 GEVIDPSLKGMTQSLNDVSKSRTSKVEEYSDVSSEVIESEQGESEIQSAKLVAPVQGYFR 1312

Query: 1311 KGTKSRAKKS--TLKDVKG 1327
            K  +++  K+    KDV G
Sbjct: 1313 KTQQAQGHKADDVFKDVAG 1331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224089995\|ref\|XP_002308898.1\| condensin complex components subunit [Populus trichocarpa] gi\|222854874\|gb\|EEE92421.1\| condensin complex components subunit [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255576542\|ref\|XP_002529162.1\| condensin, putative [Ricinus communis] gi\|223531386\|gb\|EEF33221.1\| condensin, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356500298\|ref\|XP_003518970.1\| PREDICTED: condensin complex subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|334186044\|ref\|NP_001190114.1\| condensin complex subunit 1 [Arabidopsis thaliana] gi\|332646086\|gb\|AEE79607.1\| condensin complex subunit 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|145339600\|ref\|NP_191265.2\| condensin complex subunit 1 [Arabidopsis thaliana] gi\|332646085\|gb\|AEE79606.1\| condensin complex subunit 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449437735\|ref\|XP_004136646.1\| PREDICTED: condensin complex subunit 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|6911876\|emb\|CAB72176.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297739914\|emb\|CBI30096.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297820496\|ref\|XP_002878131.1\| binding protein [Arabidopsis lyrata subsp. lyrata] gi\|297323969\|gb\|EFH54390.1\| binding protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1342
DICTYBASE\|DDB_G0293984		1403	ncapD2 "non-SMC condensin I co	0.540	0.517	0.338	1.1e-143
MGI\|MGI:1915548		1392	Ncapd2 "non-SMC condensin I co	0.580	0.559	0.318	1.2e-142
UNIPROTKB\|F1N3G4		1397	NCAPD2 "Uncharacterized protei	0.574	0.551	0.312	3.6e-140
UNIPROTKB\|E2RHZ0		1400	NCAPD2 "Uncharacterized protei	0.555	0.532	0.320	1.5e-139
UNIPROTKB\|Q15021		1401	NCAPD2 "Condensin complex subu	0.555	0.532	0.323	6.6e-139
RGD\|1562596		1390	Ncapd2 "non-SMC condensin I co	0.526	0.507	0.326	1.5e-136
UNIPROTKB\|F5GZJ1		1356	NCAPD2 "Condensin complex subu	0.555	0.550	0.323	3.8e-136
ZFIN\|ZDB-GENE-050506-59		1414	ncapd2 "non-SMC condensin I co	0.561	0.532	0.306	3.7e-122
UNIPROTKB\|F1NEH3		1393	NCAPD2 "Condensin complex subu	0.425	0.409	0.332	9.4e-120
UNIPROTKB\|F1NH88		1386	NCAPD2 "Condensin complex subu	0.426	0.412	0.329	2e-119

DICTYBASE\|DDB_G0293984 ncapD2 "non-SMC condensin I complex, subunit D2" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

 Score = 986 (352.1 bits), Expect = 1.1e-143, Sum P(4) = 1.1e-143
 Identities = 265/784 (33%), Positives = 416/784 (53%)

Query:   549 LEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVL 608
             L++  +F K ++ST+ T+ QLM S + SD+  ++  +    ++QID ++  + KML L+ 
Sbjct:   544 LDSSCKFIKIINSTIDTMCQLMGSVNPSDILESVHFIQVAHKYQIDKSKEAITKMLALIW 603

Query:   609 SQDKSIYEAVENAFITIYVR------KSPVET----AKNLLNLAIDSNIGDQAAMEFIVG 658
             ++++SI E+   +F  + ++      KS +++    AKNL++L   + +G+  ++E ++ 
Sbjct:   604 NKEQSIKESTIRSFHELLIKDTREKVKSTLKSSYYIAKNLIDLTTTATLGEITSLEELMI 663

Query:   659 TLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIIDI 718
                 K  +    I ALWD F   V     + SR AL +L M + ++++V+   +  ++ I
Sbjct:   664 EFTKKDLIDQDIIKALWDIFSGKVVNFNKQDSRGALIILSMISNNNSSVVKDKVNLLVSI 723

Query:   719 GFGRWAKVEPLLARTACIAIQRLSQEDKKKL--LLSYGSRVFATLESLITGFWLPDNIWY 776
             G     + +  L R  CI +Q+L  +  K+   +L       +  E LI           
Sbjct:   724 GLEE--QDDEFLPRYTCITLQKLRSKGLKETDQILPRFKNNQSLFERLIYHICSTTTTTT 781

Query:   777 TAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSK 836
             T  D   + I           V      L+   D +  E      D V      + Q   
Sbjct:   782 TTNDNIDNDIKNSKWFMFAEQVINTIYILAEQPDLISSEIIKKLSDQVLDENGETNQYC- 840

Query:   837 LGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSIN 896
             L + +FIL HIA+ QLVY+E    EI++ + ++ K     +N   NNN N    K T I 
Sbjct:   841 LSKLIFILGHIAIKQLVYVEEIQSEIKRIQYEQSKQ---SKN---NNNNN---KKKTDIE 891

Query:   897 AELGLAASE-DAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLM---NKYP 952
              ELG   +E +A+ + +  +AE +I+S    + NLIG  +  +   C N++ +    ++P
Sbjct:   892 KELGTDQAEAEAESEAIQIQAESDILS----ENNLIGKYSQLVVSICYNYNEIFSNEQFP 947

Query:   953 E--LQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNL 1010
                LQ SA+L L +FM +D+++C++NLQLLFT++E S  E++RSN  I LGDLA RFPNL
Sbjct:   948 NQLLQTSAVLTLSKFMCVDSNFCESNLQLLFTLLEKSSIEVIRSNIIIGLGDLAFRFPNL 1007

Query:  1011 LEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLA 1070
             +EPWT  +Y+RL+DP+   RKN+++VL+HLILNDM+KVKG I+EMAI +ED D RISN+A
Sbjct:  1008 VEPWTSKIYSRLRDPNADARKNSLMVLTHLILNDMIKVKGQISEMAICLEDSDIRISNIA 1067

Query:  1071 KLFFHELSKKGNNPIYNLLPDILGKLC-------N-QNLKTESFCNIMQLLIGFIKKDKQ 1122
             KLFF  L+ KGNN +YN LPDI+GK+        N  N+  +S  NI++ L  FI+KDKQ
Sbjct:  1068 KLFFSTLASKGNN-LYNSLPDIIGKITPASTVTSNLNNISKDSIKNILKYLFSFIEKDKQ 1126

Query:  1123 MEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHALSEDSVMDN 1182
              E L++KL  RF     I + + IS+CL  L + +K +KKLIE FK Y+  L+++ + +N
Sbjct:  1127 SETLIDKLLQRFKTSKSISESQNISFCLQLLNYNDKSLKKLIEHFKLYQDKLNDNEIYNN 1186

Query:  1183 FRNIINKSKK---FAKP-EVKVCIEEFEEKLNKYHTEKKDQEATTRNAQIHQQKVNTMGN 1238
                 I+K+KK     K  E+K  ++E E+K+N      + Q       Q+ Q+   T GN
Sbjct:  1187 LMISISKTKKQPNLTKTSEIKQLVDEIEKKINT----ARSQLTLGETVQLVQE---TDGN 1239

Query:  1239 SVADRNXXXXXXXXXXXXXXXXXXPSAKRTNQYINNISKSQSDGSEEHSGASSEVTETET 1298
             S    +                  PS K   +      K      EE S  SSE  + E+
Sbjct:  1240 S----SGTSSTTTTSQSIQKPPLKPSKKAPAKKRAPSRKKYQSSEEEESEESSEEEDEES 1295

Query:  1299 GDIE 1302
             GD E
Sbjct:  1296 GDDE 1299

GO:0007076 "mitotic chromosome condensation" evidence=IEA

MGI\|MGI:1915548 Ncapd2 "non-SMC condensin I complex, subunit D2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N3G4 NCAPD2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RHZ0 NCAPD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q15021 NCAPD2 "Condensin complex subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1562596 Ncapd2 "non-SMC condensin I complex, subunit D2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F5GZJ1 NCAPD2 "Condensin complex subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050506-59 ncapd2 "non-SMC condensin I complex, subunit D2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NEH3 NCAPD2 "Condensin complex subunit 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NH88 NCAPD2 "Condensin complex subunit 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00000678001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (1321 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00029974001	SubName- Full=Chromosome undetermined scaffold_51, whole genome shotgun sequence; (1176 aa)	•	•	•	•	0.608
	GSVIVG00028763001	RecName- Full=DNA topoisomerase 2; EC=5.99.1.3;; Control of topological states of DNA by transi [...] (1489 aa)	•			•	0.434

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1342
COG5098		1128	COG5098, COG5098, Chromosome condensation complex	1e-101
pfam12717		171	pfam12717, Cnd1, non-SMC mitotic condensation comp	2e-65
pfam12922		169	pfam12922, Cnd1_N, non-SMC mitotic condensation co	7e-38

>gnl\|CDD\|227429 COG5098, COG5098, Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

 Score =  350 bits (899), Expect = e-101
 Identities = 241/1132 (21%), Positives = 471/1132 (41%), Gaps = 85/1132 (7%)

Query: 64   EQDLFDRVYSLIRNFSSLSPSCKLSLVESLRSNLSVLLPNVDSLSRVSQSQDNETPVLDR 123
              D  + +  L  +F  L    ++ + +   S +S                 + +   + 
Sbjct: 47   SPDSLEALIDLCHDFPHLQKELEILISKLKTSTVS-----------------DNSEDYNY 89

Query: 124  LSSHRNAFKIYTFFLISIVLAQEFNISSNNNPKVTAST--------RKKQPVNSWNWD-- 173
            L SH   F I    L +     +   S  N+P   A +         KK    +      
Sbjct: 90   LVSHNVNFTIPQCNLENKGRIFQLLKSKLNSPLEVAPSLSTNVSKLEKKNDSANVEKRDC 149

Query: 174  PQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCR 233
             Q   +L  I + +   L     +S+  + +L   +    ++ E     K         R
Sbjct: 150  NQMEDLLPKIVDLIRGCLSNSRETSEEMDKFLFLFLEPTKVLLERERDSKVRSRLLECIR 209

Query: 234  IIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRT 293
            I G     ++++     +    +  +  +   +A+ +     +    +L   +   +   
Sbjct: 210  IYGKDVRLHNHVIDLMCTKNSNLTYFAHLSGLIAELIPSISDELNRCALKEDIPVLL--K 267

Query: 294  NPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLV 353
            N    + D  G ++I  FL +L++  P ++             ES+ +R   + +   LV
Sbjct: 268  NLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLV 327

Query: 354  AKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGL 413
                KD +     K         ++ +L+ER  D   YTR++ LQV  ++ + +S ++G 
Sbjct: 328  EHFKKDGQMVEHYKQ----KLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGR 383

Query: 414  WNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPF----GPQLRIASFEATLDEYRKKL 469
             +EV  +   RL+D+S++VR++A+ L   +L  +PF    G QLR+  +E  L     +L
Sbjct: 384  RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFASEHGSQLRLTLWEKNLGSAENQL 443

Query: 470  NGLEPDIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQQESLTDSCLPLADEGIADK 529
            N L+  +               C+G+ EV+    +   + +      +   + +E   + 
Sbjct: 444  NSLKSGLQET-----------LCDGEKEVEQDEGQCRTELEGSFNKSAESRIENE--VEN 490

Query: 530  DSSVPDVGNLEQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCK 589
             ++      ++    +V   +A  +F   +      +  L+   + ++V  ++  ++ C 
Sbjct: 491  INATNTSVLMKLKLMIVYYEDA-NQFIDIMKEIQDNISTLLFGKNKTEVNESMDFIVLCF 549

Query: 590  QFQIDGAEACLHKMLPLVLSQDKSIY-EAVENAFITIY---VRKSP---------VETAK 636
             F+IDG+   + KM  LV ++       ++E   ++ Y    +  P          E A+
Sbjct: 550  YFRIDGSREAIKKMFHLVWTKGTDDEGTSIELHVLSCYKLLFQMKPNNSSLFEFAKEIAR 609

Query: 637  NLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSV 696
            NL+NL+ ++++ + +++E ++G + ++  +  + IS LW  +       +  ++  ++  
Sbjct: 610  NLINLSFEASLAELSSLEQLLGMMYARRYIDKTVISELWSMYSLQKFDFSLLQASGSIIH 669

Query: 697  LCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDK--KKLLLSYG 754
            + M            L  ++ IG G    ++ +L+R  CIA  R+ Q  K   ++     
Sbjct: 670  IGMLLLVDMFHSLVGLSTLLLIGLGVEGLLDLMLSRYKCIAQIRVRQRVKFDDEINEVLA 729

Query: 755  SRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGG 814
              +   LE  +    +    +  + ++A SAI  +   P+ L   L+  S    F     
Sbjct: 730  KNLAKKLEHQVVDVTV-STEYSISTEQAKSAIMLLEKLPDMLRTSLIAISTVGCFG---- 784

Query: 815  EEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKEKMIA 874
             +PH   +     +    ++ KL R  F +  +A+  LVY E C  E +++KI  E    
Sbjct: 785  -KPHE--EDSMQYLEELERLVKLNRLKFKVGKVAIKPLVYEERCEAEFKRRKISAELEEN 841

Query: 875  DDQNIHSNNNTNGDLPKDTSINAELGLAASEDAKLDTLSEKAEKEIISGGSSQKNLIGHC 934
             D   + ++  N    +D   ++ +G   SED  +D      EKE++ G   +K+++ + 
Sbjct: 842  VD---NDDSILNNS-AQDRGESSRIG-GTSEDDFVDAFFFIKEKELLYG---EKSVLSNF 893

Query: 935  ASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRS 994
               + + C N S  +   ELQ +A L+L + M +  ++C  +L LL T +E  P   +R+
Sbjct: 894  KPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRA 952

Query: 995  NCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINE 1054
            N  + LGD  V F    +  T  +Y RL D    VR+  ++ +  LIL   +KVKG + +
Sbjct: 953  NAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGK 1012

Query: 1055 MAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLK-TESFCNIMQLL 1113
            MA+ + DED  IS++A+ FF +++KK +N +YN   DI   L +      E F  I+  L
Sbjct: 1013 MALLLTDEDAEISDMARHFFTQIAKK-DNTMYNGFIDIFSTLSSDAENGQEPFKLIIGFL 1071

Query: 1114 IGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIE 1165
              FI K++  + L E L  R        QW+ +   L  L     G   L+ 
Sbjct: 1072 TDFISKERHQKQLKESLFLRLLRCNTQSQWDKLLCSLFNLPDKIAGSGGLLN 1123

Length = 1128

>gnl\|CDD\|221731 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>gnl\|CDD\|221856 pfam12922, Cnd1_N, non-SMC mitotic condensation complex subunit 1, N-term	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1342
KOG0414		1251	consensus Chromosome condensation complex Condensi	100.0
COG5098		1128	Chromosome condensation complex Condensin, subunit	100.0
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	100.0
KOG0413		1529	consensus Uncharacterized conserved protein relate	100.0
PF12922		171	Cnd1_N: non-SMC mitotic condensation complex subun	100.0
KOG0414		1251	consensus Chromosome condensation complex Condensi	99.51
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	98.97
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.78
PTZ00429		746	beta-adaptin; Provisional	98.63
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	98.5
PTZ00429		746	beta-adaptin; Provisional	98.18
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.05
PRK09687		280	putative lyase; Provisional	97.93
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	97.78
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	97.7
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	97.59
PF12830		187	Nipped-B_C: Sister chromatid cohesion C-terminus	97.55
KOG1293		678	consensus Proteins containing armadillo/beta-caten	96.93
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.86
KOG1824		1233	consensus TATA-binding protein-interacting protein	96.83
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.77
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	96.69
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.64
PRK09687		280	putative lyase; Provisional	96.39
COG5096		757	Vesicle coat complex, various subunits [Intracellu	96.35
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	96.22
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	96.15
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	96.02
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	95.86
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	95.66
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.54
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	95.54
COG5096		757	Vesicle coat complex, various subunits [Intracellu	95.34
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	95.22
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	94.77
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	94.36
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	94.25
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	94.23
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	94.2
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	94.16
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	94.05
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	93.99
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	93.54
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	93.44
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	93.3
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	91.77
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	91.05
KOG2025		892	consensus Chromosome condensation complex Condensi	91.03
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	90.96
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	90.88
KOG2259		823	consensus Uncharacterized conserved protein [Funct	90.58
KOG2011		1048	consensus Sister chromatid cohesion complex Cohesi	90.32
KOG2025		892	consensus Chromosome condensation complex Condensi	90.27
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	90.24
PF12765		42	Cohesin_HEAT: HEAT repeat associated with sister c	89.79
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	89.6
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	89.39
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	89.32
KOG1824		1233	consensus TATA-binding protein-interacting protein	89.25
cd03572		122	ENTH_epsin_related ENTH domain, Epsin Related fami	89.17
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	89.09
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	88.44
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	88.2
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	87.34
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	87.03
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	86.97
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	86.68
COG5098		1128	Chromosome condensation complex Condensin, subunit	86.31
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	86.17
KOG2259		823	consensus Uncharacterized conserved protein [Funct	86.07
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	85.03
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	84.4
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	83.59
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	83.28
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	82.34
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	81.35
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	80.06

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=4.1e-235  Score=2118.16  Aligned_cols=1187  Identities=40%  Similarity=0.601  Sum_probs=1050.9

Q ss_pred             CCccccccCChhhhhhccCcCCCCCcceecCCCCCCCCChhhHHHHhhhccccccccCcccccccchhHHHHHHHhcCCC
Q 000705            1 MTRNFVFPQNLQALEEQEDEEHDGNRLYAQNPISITSMHPSELVEFVKGVSFDLSDKELFCIEEQDLFDRVYSLIRNFSS   80 (1342)
Q Consensus         1 m~~~F~iP~~~~dLl~~~~~~~~~~~y~V~~~~~~~~l~~~~L~~~~~~~~~~~~~~~p~~I~d~~~FD~lysll~~f~~   80 (1342)
                      |..+|+.|++..++.   .++ ++.+|+|+++.++.+++. ++.++.  .  ..+..+|+++.|  |||++||++++|.+
T Consensus         1 ~~~~~~~~l~~~~~~---~~~-~~~~~~~~~~~~~~e~~~-k~~~~~--~--~~~~~~~~~~~d--~ld~vysl~~~f~s   69 (1251)
T KOG0414|consen    1 QDLQFLLPLSEYDLI---NSS-GDPQYVVKEIFSAQELPV-KLDEFD--R--SVRLMDPDFDLD--HLDTVYSLLEDFES   69 (1251)
T ss_pred             CcchhhcCCCHHHHH---hcc-CCHHHHHHhcccccccch-hHHHHH--h--hhhhcCchhhHH--HHHHHHHHHhchhh
Confidence            568999999999998   666 778999999999999999 999998  5  677889988888  99999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC---Cc
Q 000705           81 LSPSCKLSLVESLRSNLSVLLPNVDSLSRVSQSQDNETPVLDRLSSHRNAFKIYTFFLISIVLAQEFNISSNNNP---KV  157 (1342)
Q Consensus        81 l~~~~~~~l~~~l~s~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~alkmy~yLl~~~~~~~e~~~~~~~~~---~~  157 (1342)
                      ++|++|+.+.+++.++++++...+...+.......+..+     .+|+||+|||.|+...++...+....+....   ..
T Consensus        70 l~~s~q~~~~~~l~s~lsvls~~~~~~~~~~~~~~~~~~-----~s~lna~km~~f~qi~v~~~~e~~~~s~~~~~~l~~  144 (1251)
T KOG0414|consen   70 LAPSLQNWLSEFLRSNLSVLSADLDAILDSTACLFTDLS-----NSYLNALKMGPFLQILVTKLKENGVSSVRRDQNLNV  144 (1251)
T ss_pred             cCHHHHHHHHHHHHHHHHhhccccccchhhhhccccccc-----HHHHHHHHHHHHHHHHHHHHHhccchhhhhchhhhh
Confidence            999999999999999999999999998877542211111     7899999999999999999988765433211   23


Q ss_pred             ccccccC--CCCCCccchhhHHHHHHHHHHHhccccccccCCCCcchhHHHHHHHHHHHHhhccccccchhHHHHHHHHH
Q 000705          158 TASTRKK--QPVNSWNWDPQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRII  235 (1342)
Q Consensus       158 ~~k~kK~--~~~~~~~W~~qr~~~L~~l~~~L~l~l~~Lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il  235 (1342)
                      .||+||.  ....+|+|+.+|+++|..|.++|++||++||.+++++|+|+++|++|||+++||+.+.|+.+++++||+||
T Consensus       145 ~~k~kk~~~n~~~~~~~e~~r~~~l~~i~~lLqinlskL~~~s~~~e~flsl~~~~~yrllEn~~~~k~~~t~~ai~~il  224 (1251)
T KOG0414|consen  145 SGKLKKQSGNLASGFNWEKQRNKLLCLIAQLLQINLSKLWLTSVEDEDFLSLIVDPIYRLLENEHVNKNSSTKDAIFRIL  224 (1251)
T ss_pred             hccccCcccchhhccccccccchHHHHHHHHHHhhHHHhcCCChhHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence            3454444  33446999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHH
Q 000705          236 GACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVEL  315 (1342)
Q Consensus       236 ~~~vk~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~L  315 (1342)
                      |.++|+|||..+++++|+|+|+||+|++.+.|+++..+..+||+.+|++.|||+|+..+|++  +|++|+|+++.||++|
T Consensus       225 g~s~k~~~~~~t~~~rilq~l~~fehl~~~~ad~v~l~~sky~~~sl~~~Iir~I~~~~~~~--~d~~g~k~v~~fL~el  302 (1251)
T KOG0414|consen  225 GSSVKRYNQCSTFASRILQNLRYFEHLAVHVADAVTLVRSKYGSVSLAGNIIRSIGSPEPNE--KDCAGPKIVGNFLVEL  302 (1251)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccchhc--ccccchhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998  9999999999999999


Q ss_pred             HhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHH
Q 000705          316 ADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSR  395 (1342)
Q Consensus       316 ae~~P~lvl~~is~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRsk  395 (1342)
                      |+++|++++++|+.|++|||+|||+|||||+++|||+|.+.++++++++..|+.    |+.|+++|.||++|+|||||+|
T Consensus       303 S~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~----r~~~le~l~erl~Dvsa~vRsk  378 (1251)
T KOG0414|consen  303 SERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSL----RDELLELLRERLLDVSAYVRSK  378 (1251)
T ss_pred             HHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHH----HHHHHHHHHHHhhcccHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998    9999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHHHhcc-cCC
Q 000705          396 VLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLDEYRKKLNG-LEP  474 (1342)
Q Consensus       396 vLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPfg~~L~~~~~~~~Le~~~~~L~~-l~~  474 (1342)
                      |||+|.+||+.+++|+++|++|+++|+|||+|||++|||+||||+..+|.+|||+++++.+++.+.+|++..+|++ .++
T Consensus       379 VLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~  458 (1251)
T KOG0414|consen  379 VLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELES  458 (1251)
T ss_pred             HHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998888873 322


Q ss_pred             CCCCCcccCCCCCCCCCcCCCCCccchhhHHhHHhhhhhcccCCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHH
Q 000705          475 DIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQQESLTDSCLPLADEGIADKDSSVPDVGNLEQTRALVASLEAGLR  554 (1342)
Q Consensus       475 ~~~~~~~~~~~~~~~~~l~~~~e~e~~~~ee~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~~v~yl~dal~  554 (1342)
                      .....++.   .+.....+..+..++.+.+.+....+....+..-++.. .......+.+..++++|++++++||+|++.
T Consensus       459 t~~l~~e~---~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e~~-~~~~~~~s~~~~~~i~q~~~~vq~l~d~~s  534 (1251)
T KOG0414|consen  459 TEHLEEEE---MTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQEEHC-LLENEVESVPAENEIMQLKALVQFLEDAIS  534 (1251)
T ss_pred             ccccchhh---ccchhhhhcccceeechhhhhhhccccccccccchhhh-hhhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence            11111100   00000000000001111111111000000000000000 000011134556689999999999999999


Q ss_pred             HHHHHHhHHHHHHHHhcCCCchhHHHHHHHHHHHhhccCcchHHHHhhhcchhcccCccHHHHHHHHHHHhhcCCC----
Q 000705          555 FSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQDKSIYEAVENAFITIYVRKS----  630 (1342)
Q Consensus       555 Fi~~i~~al~~i~~LL~Sk~~sDV~EaI~Ff~~a~~f~I~~a~~girkML~LVWskd~~I~~~vi~ay~~Ly~~~~----  630 (1342)
                      |++.|++|+|.+.+||+|+|++||.|+|+||++|++|||+||+.||||||||||++|++|+++|++||++|||+++    
T Consensus       535 f~~~ms~~~~ii~~ll~s~t~teV~E~Idfl~~c~~F~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~  614 (1251)
T KOG0414|consen  535 FSDEMSEAIPIISQLLFSKTTTEVKEAIDFLVRCKQFGIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSK  614 (1251)
T ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCch
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             ---hHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhccCCCCCHHhHHHHHHHHHHHhccChhh
Q 000705          631 ---PVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAV  707 (1342)
Q Consensus       631 ---~~~ia~nLi~L~~~at~~dl~sLEeLl~~~~~~~~I~~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mia~~~~~I  707 (1342)
                         ++.+|+||+.++.+++.||++|||+++++|+++|.|++.||++||++|+.+..+++.+++|||++||||+|+++|+|
T Consensus       615 ~~e~~~ia~NL~~l~~~~s~~d~~slE~vl~~lv~~~~Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~I  694 (1251)
T KOG0414|consen  615 ASEASSIAQNLSKLLIDASIGDLTSLEEVLCELVARGYIDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSI  694 (1251)
T ss_pred             hhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHhCCCccHHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhh
Confidence               47889999999999999999999999999999999999999999999988999999999999999999999999999


Q ss_pred             hhhhHHHHHHhhcCCCCCCcHHHHHHHHHHHHhcccc--ccccccccCcchHHHHHHHHHc-cCCCCCCchHHHHHHHHH
Q 000705          708 LGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQE--DKKKLLLSYGSRVFATLESLIT-GFWLPDNIWYTAADKAIS  784 (1342)
Q Consensus       708 v~~~l~~l~~iglg~~~~~D~~lar~~c~aL~~l~~~--~k~~~r~~~~~~if~~L~~~l~-~~~~~~~~W~~~aeqaIn  784 (1342)
                      +.+|++.|++||+|+++..+..|++|+|++..|..+.  ..+.++++.+|.+|+.|..++. +|..++++||+++++||.
T Consensus       695 v~~~~~~lv~iglg~p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais  774 (1251)
T KOG0414|consen  695 VLANLDLLVQIGLGEPRLAVDVLARYSNIVDPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAIS  774 (1251)
T ss_pred             hhhhhHHHHHhccCcHHHHHHHHHHHHHhhcccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999843  3344899999999999999998 677788999999999999


Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHhhcccC-CCCCCCCCCCCCCCCCCCccHhHHHH-HHHHHHHHHHHHHHHHHHHHH-H
Q 000705          785 AIYTIHPTPETLAVDLVKKSLSAVFDYVG-GEEPHNGIDCVGTSMPTSVQVSKLGR-YLFILSHIAMNQLVYIESCVC-E  861 (1342)
Q Consensus       785 aIy~l~~~Pd~l~~~iIk~~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~Lsq-llFivGhVAlk~lV~lE~~~~-~  861 (1342)
                      +||.||+.||++|..||+.++.+.|+... +..+.++++..+.   ...++..+.. |+|++||||+||+||||.|++ +
T Consensus       775 ~Iy~is~~Pe~la~~li~~~~~~~f~~~~~E~~~~~~d~~k~~---~ltp~~~l~~~lif~vg~vAikqlvyiE~~i~~~  851 (1251)
T KOG0414|consen  775 AIYSISMLPEVLATQLIRKLLKQDFESLECEADTITDDPRKSD---ALTPERVLKDSLIFIVGDVAIKQLVYIEVCISKE  851 (1251)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHhhhhhhhhccccCCccccc---ccCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998765 3222222222211   2567888999 999999999999999999999 6


Q ss_pred             HHHHHHHHHhhhhhhhccccCCCCCCCCCCccchhhhhccc--cchhhhhhhhHHHHHhhhccCCCCcCchhhhhhHHHH
Q 000705          862 IRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSINAELGLA--ASEDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLS  939 (1342)
Q Consensus       862 lKrrk~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~Elgl~--t~eD~~~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~  939 (1342)
                      +|||+...+..+.+.++...+   .+..+++...+.|+|++  |+||+++|+|+.|||+||+||+   ++|||+|+|+|+
T Consensus       852 ~kRr~~~~~~~e~k~~N~~e~---~s~t~~~~~~~~e~dlig~tseDd~~d~i~~icE~eLl~ge---k~lLg~f~piv~  925 (1251)
T KOG0414|consen  852 FKRRKIKTELEEKKDKNQREN---LSNTQRETQFTVELDLIGGTSEDDLADLISGICEKELLYGE---KSLLGRFAPIVV  925 (1251)
T ss_pred             HHHHHHHHHHHhhcccCchhh---hccccccccCCccccccCCCcchhHHHHHHHHHHHHHhcCh---HHHHHHHHHHHH
Confidence            999998444333222211111   02234456778899988  8999999999999999999998   999999999999


Q ss_pred             HHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHh
Q 000705          940 KFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMY 1019 (1342)
Q Consensus       940 ~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly 1019 (1342)
                      ++|+||+.| +||.||+||++|||||||+|++||+.|+|+|||+|+++|+|.||||+|+|||||++||||++||||++||
T Consensus       926 e~c~n~~~~-sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly 1004 (1251)
T KOG0414|consen  926 EGCRNPGLF-SDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLY 1004 (1251)
T ss_pred             HHhcCCCcC-CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHH
Confidence            999999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCC
Q 000705         1020 ARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQ 1099 (1342)
Q Consensus      1020 ~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~ 1099 (1342)
                      ++|+|+++.||+||++||||||+|||||||||+++||+||+||+++|+++||.||+||+.|+ |+|||++|||||||||+
T Consensus      1005 ~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred             HHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchHHHHhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             CCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhcccchhhHHHHHHHHhccCCChhHHHHHHHhHHHHHHhhCchHH
Q 000705         1100 NLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHALSEDSV 1179 (1342)
Q Consensus      1100 ~~~~~~f~~I~~fLl~~i~KdKq~e~LveKLc~Rf~~~~~~rqwrdiafcLslL~~~ek~ikKL~e~~~~y~dkL~d~~V 1179 (1342)
                      ++++++|++||+||+++|+||   |        ||+..+++|      |||++|||+||++||++++|.+|.+|++++.|
T Consensus      1084 ~l~~~~~~~vm~~li~~ikkd---e--------rf~~~~~~r------ycl~~l~~~e~~~kk~~~~f~~~a~k~~~d~v 1146 (1251)
T KOG0414|consen 1084 NLEEESYKTVMEFLIGLIKKD---E--------RFSADRIER------YCLSLLTTTERGSKKLKDLFTALAKKVQNDSV 1146 (1251)
T ss_pred             cccchhhHHHHHHHHHHhccc---c--------cccccccch------hhhcccccchhhhhhHHHHHHHHHHHhhhhHH
Confidence            999999999999999999999   2        999999999      99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhhhccCCCcccccc
Q 000705         1180 MDNFRNIINKSKKFAKPEVKVCIEEFEEKLNKYHTEKKDQEATTRNAQIHQQKVNTMGNSVADRN 1244 (1342)
Q Consensus      1180 ~~~F~~Ii~k~kk~~k~e~K~~i~EfE~kl~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1342)
                      |++|+.|++|.+|++|||+|++++|||+||++||..++++   +..+|.+.+++..+++...+.-
T Consensus      1147 ~~~f~diis~~sk~a~pe~ka~~~efe~ki~~~h~~~~~~---~~~~Q~~e~~~~~~~~~~~~~r 1208 (1251)
T KOG0414|consen 1147 YNNFIDIISKLSKFAKPELKAVIDEFEEKIKECHSFKKDE---RHKAQLVEELTPRLKKCSTGSR 1208 (1251)
T ss_pred             HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHhcchhH---HHHHHHHHHHhHHhhccccccc
Confidence            9999999999999999999999999999999999999888   6677888888877766654433

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]	Back alignment and domain information

>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus	Back alignment and domain information

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1342
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	4e-07
3tjz_B		355	Coatomer subunit gamma; protein trafficking, golgi	3e-05
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	7e-05
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	1e-04
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	6e-04
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	7e-04

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

 Score = 64.3 bits (156), Expect = 3e-11
 Identities = 28/214 (13%), Positives = 79/214 (36%), Gaps = 3/214 (1%)

Query: 946  SLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAV 1005
             L +    +  +A+  +        D  +  L+ LF++++ S +  +      A G +A 
Sbjct: 40   LLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK 99

Query: 1006 RFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQR 1065
              P L++     ++A  +      + N    L  +   + M +   + +    +  +++ 
Sbjct: 100  EKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNRE 159

Query: 1066 ISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQMEA 1125
                A  F   + +     +   LP I+  L + +    +  + ++ L+     + ++  
Sbjct: 160  DKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRA--SAVEALVHLATLNDKLRK 217

Query: 1126 LVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKG 1159
            +V K     +  + +   + +   +S+L   E  
Sbjct: 218  VVIKRLEELNDTSSLVN-KTVKEGISRLLLLEGH 250

PyMOL of 2db0

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1342
d2vglb_		579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	3e-08
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-07
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-07
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-04
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	1e-05

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 90/823 (10%), Positives = 228/823 (27%), Gaps = 88/823 (10%)

Query: 330  LILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVS 389
             + + G  S  IR  +  ++  + +K               L+    +L  L        
Sbjct: 93   CLNNIGDSSPLIRATVGILITTIASKGE-------------LQNWPDLLPKLCSLLDSED 139

Query: 390  AYTRSRVLQVWAELCEEHSVSI------GLWNEVAEVAAGRLEDKSAIVRKSALNLLVMM 443
              T         ++CE+ +  +         N +        +  S  +R  A+  +   
Sbjct: 140  YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQF 199

Query: 444  LQHNPFGPQLRIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDRGTCNGDGEVDDLNA 503
            +        L I SF   L                 ++   L                  
Sbjct: 200  IISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLE----------------- 242

Query: 504  EVVVQEQQESLTDSCLPLADEGIADKDSSVPDVGNLEQTRALVASLEAGLRFSKCVSSTM 563
              V  ++      + +    +   D+D +V     LE     +   E  +     V    
Sbjct: 243  --VRMDRLLPHMHNIVEYMLQRTQDQDENV----ALEACEFWLTLAEQPICKDVLVRHLP 296

Query: 564  PTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQDKSIYEAVENAFI 623
              +  L+     SD++  +L     +   I             +  +        +    
Sbjct: 297  KLIPVLVNGMKYSDIDIILLKGDVEEDETIP-------DSEQDIRPRFHRSRTVAQQHDE 349

Query: 624  TIYVRKSPVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVS 683
                 +   +   +  +   D N+   +A    V   V + ++    +  +       + 
Sbjct: 350  DGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDEL----LPHILPLLKELLF 405

Query: 684  GTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQ 743
                    + + VL   A+     +  +L ++I       +  + L+    C  + R + 
Sbjct: 406  HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 465

Query: 744  EDKKKLLLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDLVKK 803
                +   +Y       +  L+      +     AA  A + +     T     +  +  
Sbjct: 466  WVVSQPPDTYLKP---LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILD 522

Query: 804  SLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQL----------V 853
            +L   F     +      D +GT   +         Y+ +L    + +            
Sbjct: 523  TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF 582

Query: 854  YIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSINAELGLAASEDAKLDTLS 913
             +  C+  +            +       N     L +    NA+     + D     ++
Sbjct: 583  PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVA 642

Query: 914  EKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDAD-- 971
                  +  G       +   ++ L+   +   + +K PE++ S+   L           
Sbjct: 643  LDLLSGLAEGLGGNIEQLVARSNILTLMYQ--CMQDKMPEVRQSSFALLGDLTKACFQHV 700

Query: 972  --YCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARL----KDP 1025
                   + +L T +       V +N T A+G+++++    ++P+   +  +L      P
Sbjct: 701  KPCIADFMPILGTNLNPEFIS-VCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRP 759

Query: 1026 SM--AVRKNAVLVLSHLILNDMMKVKGYINEMA-------IRVEDEDQRISNLAKLFFHE 1076
            +    + +N  + +  L      +V   + +           + D +++ S  A      
Sbjct: 760  NTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDS--AFRGICT 817

Query: 1077 LSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKK 1119
            +     + +          + +     +   ++   ++   K 
Sbjct: 818  MISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKN 860

PyMOL of d1qbkb_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 2e-07
 Identities = 81/730 (11%), Positives = 196/730 (26%), Gaps = 52/730 (7%)

Query: 377  MLEILLERCRDVSAYTRSRVLQVW-AELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKS 435
              +       D+S   R    +   A +   H +    +  V+     R +++   V+  
Sbjct: 331  GSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKAD 390

Query: 436  ALNLLVMML-QHNPFGPQLRIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDRGTCNG 494
              +  + +L Q  P    L         +     L    P+I  +++   +         
Sbjct: 391  VFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNI-VKALHKQMKEKSVKTRQ 449

Query: 495  DGEVDDLNAEVVVQEQQESLTDSCLPLADEGIADKDSSVPDVGNLEQTRALVASLEAGLR 554
                       V+           +P     + DK SS     +      ++    +   
Sbjct: 450  CCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV 509

Query: 555  FSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEAC-------LHKMLPLV 607
            F   V + +P +V  +           +L+  +  +      +         +  +    
Sbjct: 510  FHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCT 569

Query: 608  LSQDKSIYEAVENAFITIYVRKSPVETAKNLLNLAI------------DSNIGDQAAMEF 655
            + + K+     E     I      +    + L   +            +           
Sbjct: 570  IKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKAL 629

Query: 656  IVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVLGSHLQDI 715
             +             +          +           LS L +  K+ +  L + + D 
Sbjct: 630  TLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDA 689

Query: 716  IDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPDNIW 775
            +            +      I+      +     L      +   L  L+    L     
Sbjct: 690  VLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGAL 749

Query: 776  YTAADKAISAIYTI--HPTPETLAVDLVKKSLSAVFDYVGGEEPHNGIDCVGTSMPT--S 831
                D   + + T   +     L   L     S        +  ++   CV         
Sbjct: 750  SAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPK 809

Query: 832  VQVSKLGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPK 891
               + +G+++  + +      + + + +               + +++     ++     
Sbjct: 810  EGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEV 869

Query: 892  DTSINAELGLAAS---------------EDAKLDTLSEKAEKEIISGGSSQKNLIGHCAS 936
             ++ +  LG  +                   K   L   + KEIIS  +S   L  +  +
Sbjct: 870  KSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISS-ASVVGLKPYVEN 928

Query: 937  FLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNC 996
              +   ++          +      L +  +ID +     L  L   +  S S   RS+ 
Sbjct: 929  IWALLLKH--CECAEEGTRNVVAECLGKLTLIDPETL---LPRLKGYL-ISGSSYARSSV 982

Query: 997  TIALGDLAVRFPN----LLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI 1052
              A+       P     LL+    +    L+DP + VR+ A++  +    N    ++  +
Sbjct: 983  VTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLL 1042

Query: 1053 NEMAIRVEDE 1062
            + +   + +E
Sbjct: 1043 DTVLPHLYNE 1052

PyMOL of d1u6gc_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 81/831 (9%), Positives = 218/831 (26%), Gaps = 39/831 (4%)

Query: 300  KDTVGAENIGRFLVELADRLPKLISTN----IGVLILHFGGESYKIRNALVGVLGKLVAK 355
            +D          + ++  R   L+       +  L+         +R   +  LG LV  
Sbjct: 143  EDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS 202

Query: 356  AFKDIEGEA-----------SSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELC 404
                +  +             S S      Q +  I  +    +  Y    +  V     
Sbjct: 203  CGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN 262

Query: 405  EEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNP-FGPQLRIASFEATLD 463
             +         +  E    R   +      + +N+ +  L ++P +          A   
Sbjct: 263  VDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDA 322

Query: 464  EYRKKLNGLEPDIHSESITDGLPSDRGTC-------NGDGEVDDLNAEVVVQEQQESLTD 516
            +     +    D +S+         R          +   E+     + V         +
Sbjct: 323  DGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKE 382

Query: 517  SCLPLADEGIADKDSSVPDVGNLEQTRALVASLEAGLRFSKCVSSTMPTLVQ-----LMA 571
                +  +      S +     ++       ++E G      + S +P +V+     +  
Sbjct: 383  REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE 442

Query: 572  SSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQDKSIYEAVENAFITIYVRKSP 631
             S  +      +L            +     +  ++ S +     +         +    
Sbjct: 443  KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVIL 502

Query: 632  VETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSR 691
               +  + +  + +       +  +          ++     L          ++ + + 
Sbjct: 503  CNHSPQVFHPHVQAL--VPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 560

Query: 692  AALSVL------CMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQED 745
                +         AA     V    +  +  I       +   L  T  I ++RL  E 
Sbjct: 561  YIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI 620

Query: 746  KKKLLLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDLVKKSL 805
             +   +   + +  +   +     L + +   A+    +       T   L + +   S 
Sbjct: 621  TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSD 680

Query: 806  SAVFDYVGGEEP-HNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQLVYIESCVCEIRK 864
            S     +         +        + + +S L     +           I + +  + +
Sbjct: 681  SLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVR 740

Query: 865  QKIKKEKMIADDQNIHSNNNTNGDLPKDTSINAELGLAASEDAKLDTLSEKAEKEIISG- 923
              + +   ++   +        G           +              +++   I    
Sbjct: 741  SPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCV 800

Query: 924  GSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTV 983
             +  +       + + +F ++         ++  A+L+L              L+ +   
Sbjct: 801  AALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILE 860

Query: 984  VESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILN 1043
              SSPSE V+S  + ALG ++V       P+              +  +   ++S   + 
Sbjct: 861  AFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVV 920

Query: 1044 DMMKVKGYINEMAIRV-EDEDQRISNLAKLFFHELSKKGNNPIYNLLPDIL 1093
             +      I  + ++  E  ++   N+      +L+      +   L   L
Sbjct: 921  GLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYL 971

PyMOL of d1u6gc_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1342
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.7
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.52
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.39
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.33
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.09
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.02
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	98.91
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.6
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.56
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.51
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.05
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.92
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.84
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.57
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	97.56
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	97.09
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	97.03
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	96.66
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.61
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.53
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	96.47
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.38
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	95.98
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	95.66
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.59
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	94.5
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	94.45
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	93.31
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	92.28

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.3e-11  Score=93.86  Aligned_cols=159  Identities=19%  Similarity=0.219  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             222245799988108767778857999999999988401-----799998839999999832998456766799862231
Q 000705          930 LIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMII-----DADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLA 1004 (1342)
Q Consensus       930 LL~~f~Plv~~iC~~p~~~~~~~~l~~~A~l~L~K~m~v-----s~~~c~~~l~llf~~le~s~~~~vR~N~ii~lgDl~ 1004 (1342)
                      -+..|.|.+......      ++..|....-+|..++..     -..+++..++.|++.+ .+++..+|+.+.-++|.|+
T Consensus       884 ~~~~~lp~il~~l~~------~~~~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~-~~~~~~vr~~~a~~lg~L~  956 (1207)
T d1u6gc_         884 NLPEYLPFVLQEITS------QPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHC-ECAEEGTRNVVAECLGKLT  956 (1207)
T ss_dssp             THHHHHHHHHHHHHS------CGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCC-CCSSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
T ss_conf             288875999998724------735899999999999985455546878999999999881-7971879999999999887


Q ss_pred             HCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC----CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             01576554123878642289998999999999999877055321----11598877772489735999999999998403
Q 000705         1005 VRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKV----KGYINEMAIRVEDEDQRISNLAKLFFHELSKK 1080 (1342)
Q Consensus      1005 ~rfpnlvep~~~~ly~~L~D~~~~VR~~al~vlthLil~dmiK~----Kg~l~~~a~~l~D~d~~I~~la~~ff~eL~~K 1080 (1342)
                      ..+|.   .+.|.+..+|.|+++.+|.+++..+.+++.+.--..    +..+..+..++.|+|..||..|-..|..+.+.
T Consensus       957 ~~~~~---~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~ 1033 (1207)
T d1u6gc_         957 LIDPE---TLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHN 1033 (1207)
T ss_dssp             HSSGG---GTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHH
T ss_pred             HCCHH---HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             02789---999999998579999999999999999998665546789999999999986799989999999999999984


Q ss_pred             CCCHHHHHHHHHHHHCCC
Q ss_conf             883125126678862058
Q 000705         1081 GNNPIYNLLPDILGKLCN 1098 (1342)
Q Consensus      1081 ~~n~iyn~lpdiis~Ls~ 1098 (1342)
                      .|..|+-++|.++..|-+
T Consensus      1034 ~p~li~~~l~~llp~l~~ 1051 (1207)
T d1u6gc_        1034 KPSLIRDLLDTVLPHLYN 1051 (1207)
T ss_dssp             CGGGTGGGHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             869899999999999999

PyMOL of d1u6gc_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure