Citrus Sinensis ID: 000727

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------133
MANQSKEMMEEESCLLSAAAFEERVIETAKRCQQRHDSPVMWAVEMTRCLKSGSGSVVELGEVLVSYLCFQNNHPSLWKFLDYALTSNLLSPIHILSLLTSRVIPHRRSQPQAFRLYLELLSRYALNFHAVASEDCNVKIIESIEACLQLSRTYNVRVVEFGHALVLSFFDLVVRLIDSLFEDMGLQVGPLDQQSMEIDSIGNFCVGNNEHFEQIRRKNSLLVIEVLNKLMDSSKAMVLLRLIHFNMPESFNGLLQRLQFLEANKLESSKLKTVSQLLARLCDNVRNVPSYDYKLNKHRFIGMLIDTKSLRPMRSCNSESSWSSCWLSFDIFMENSMDGKQLPVTSAIIVLTRIITTLRVLNRASWQETFLALWLSALRLVQRERDPPEGPLPHLEARLGILLSIVPLAIANVLAEQANIQLSTLQGSKTSGSIETGCGHGMEEKSLASKKEGLVSSLQALGNFSALLCPPASVACEANNAAAKAASFISVSKNMKDGICSGSPSETLLNSGGNMRHLIVEACIARNLIDTSAYYWPGYVSASVIAVNEFSPVQKSPWSMFMEGAPLNGSLVNLLFSTPASSLAEIEKLYHIALTGSAEERSAAAKILCGASLARGWNIQEHVVRFVVKLLSPPIPPGYTGPRSHLVDHMPMLTAIFFGASSVDTVHILSLHGLVPDVVASLMPLCEVFGSLVPTSSSKSSTGDEPSVYMVFSCAFLFLVRLWKFYRSPHELCLSGGTLAGELTLEYLLLLHNSHIASRTSAAQSERNSNLDQLDTVSDDPIYIDHFPKLRAWYCQNKTCIASTLSGLCSGNPVHQVANKILSMIYSKMTKTGASSSNSSTPPSGSASESPACTGEDAYQRPMLPAWEVLEAIPFVLEAILSACAYGRLSSRDLITGLRELVDFLPASIATIISYFSAEISRGIWKAVPMNGTDWPSPAPMLPSIESEIKEILAAVGVSVPCCSAGTSPLTLPLPVAVLVSLTITFKLTKSLDYIHAVIGPALENCAAGCSWPCIPIIGSLWAQKVRRWHDFIVVSCSRSVFWKNQEAVSQLLRSCFTSFLGSLHVSSLLTNQSSVNNLLGSVVAARAVCPSLAPGYLYLRSCRTIHNVQHVNDVIVGLVAEFAREAAAKWASSDLPRLKSSQASLSLATSKAREVASLGASLLCATAGLQVVQELYRETIPTWLLSSRDEKLGKVSAVAHIMEGYAMAYMWVLSGGLIWGFEAKMPSWAVSRRRYLIGTHFEYLSRALEGNIKLGCDPATWRAYVSCLVGLVVSSAPAWIQEVRPETLRKLASGLRGWHECELALSLLERGGIGSIPSVMELLHVIN
cccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccEEEHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccEEcEEccccccccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccccEEHHHccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHcccccccccccHHHHHHHccccccccccHHHHHccccccccccccccccEEcccccHHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHEEEEEEEcccHHHHHHHHcHHHHHHccccccccHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEcccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHccc
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccccccccccccccccccEEEEHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEccccEcccccccccccccccccHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccHHHHEHHHcHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccccccHHHHHHHHHcHHcccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccEEEEEccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHcccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHcc
MANQSKEMMEEESCLLSAAAFEERVIETAKRCQQRHDSPVMWAVEMTRCLksgsgsvvELGEVLVSYLCFQNNHPSLWKFLDYALtsnllspiHILSLLTsrviphrrsqpQAFRLYLELLSRYALNFHAVASEDCNVKIIESIEACLQLSRTYNVRVVEFGHALVLSFFDLVVRLIDSLFedmglqvgpldqqsmeidsignfcvgnnehFEQIRRKNSLLVIEVLNKLMDSSKAMVLLRLIHFNMPESFNGLLQRLQFLEANKLESSKLKTVSQLLARLCDnvrnvpsydyklnkhRFIGMlidtkslrpmrscnsesswsscWLSFDIFMensmdgkqlpvTSAIIVLTRIITTLRVLNRASWQETFLALWLSALRLVqrerdppegplphlEARLGILLSIVPLAIANVLAEQANIQLstlqgsktsgsietgcghgmeekslasKKEGLVSSLQALGnfsallcppasvaCEANNAAAKAASFISVSKnmkdgicsgspsetllnsggnMRHLIVEACIARNlidtsayywpgyvSASVIAvnefspvqkspwsmfmegaplngsLVNLlfstpassLAEIEKLYHIALTGSAEERSAAAKILCGASLARGWNIQEHVVRFVVKLlsppippgytgprshlvdhmpmlTAIFFGASSVDTVHILSLHGLVPDVVASLMPLCEVfgslvptsssksstgdepsvyMVFSCAFLFLVRLWkfyrsphelclsggtlagELTLEYLLLLHNSHiasrtsaaqsernsnldqldtvsddpiyidhfpklrawycqnktciastlsglcsgnpvhQVANKILSMIYSKMtktgasssnsstppsgsasespactgedayqrpmlpaweVLEAIPFVLEAILSACAYGRLSSRDLITGLRELVDFLPASIATIISYFSAEISRGIwkavpmngtdwpspapmlpsIESEIKEILAAVGVsvpccsagtspltlplPVAVLVSLTITFKLTKSLDYIHAVIGPalencaagcswpcipiigslwaqkvrrWHDFIVVSCSRSVFWKNQEAVSQLLRSCFTSFLGSLHVSSLLTNQSSVNNLLGSVVAARavcpslapgylylrscrtihnvqHVNDVIVGLVAEFAREAAAKWassdlprlkssqASLSLATSKAREVASLGASLLCATAGLQVVQELYRETIPTwllssrdeklgKVSAVAHIMEGYAMAYMWVLSGGLiwgfeakmpswavSRRRYLIGTHFEYLSRALEGniklgcdpatWRAYVSCLVGLVvssapawiqevRPETLRKLASGLRGWHECELALSLLerggigsipSVMELLHVIN
manqskemmeeESCLLSAAAFEERVIETAKRcqqrhdspvMWAVEMTRCLKSGSGSVVELGEVLVSYLCFQNNHPSLWKFLDYALTSNLLSPIHILSLLTSRVIPHRRSQPQAFRLYLELLSRYALNFHAVASEDCNVKIIESIEACLQLSRTYNVRVVEFGHALVLSFFDLVVRLIDSLFEDMGLQVGPLDQQSMEIDSIGNFCVGNNEHFEQIRRKNSLLVIEVLNKLMDSSKAMVLLRLIHFNMPESFNGLLQRLQFLEANKLESSKLKTVSQLLARLcdnvrnvpsydyklnkhrFIGMLIDTKSLRPMRSCNSESSWSSCWLSFDIFMENSMDGKQLPVTSAIIVLTRIITTLRVLNRASWQETFLALWLSALRLVQRERDPPEGPLPHLEARLGILLSIVPLAIANVLAEQANIQlstlqgsktsgSIETGCGHGMEEKSLASKKEGLVSSLQALGNFSALLCPPASVACEANNAAAKAASFISVSKNMKDGICSGSPSETLLNSGGNMRHLIVEACIARNLIDTSAYYWPGYVSASVIAVNEFSPVQKSPWSMFMEGAPLNGSLVNLLFSTPASSLAEIEKLYHIALTGSAEERSAAAKILCGASLARGWNIQEHVVRFVVKLLSPPIPPGYTGPRSHLVDHMPMLTAIFFGASSVDTVHILSLHGLVPDVVASLMPLCEVFGSLVPTSSSKSSTGDEPSVYMVFSCAFLFLVRLWKFYRSPHELCLSGGTLAGELTLEYLLLLHNSHIASRTSAAQSERNSNLDQLDTVSDDPIYIDHFPKLRAWYCQNKTCIASTLSGLCSGNPVHQVANKILSMIYSKMTKTGAsssnsstppsgsaSESPACTGEDAYQRPMLPAWEVLEAIPFVLEAILSACAYGRLSSRDLITGLRELVDFLPASIATIISYFSAEISRGIWKAVPMNGTDWPSPAPMLPSIESEIKEILAAVGVSVPCCSAGTSPLTLPLPVAVLVSLTITFKLTKSLDYIHAVIGPALENCAAGCSWPCIPIIGSLWAQKVRRWHDFIVVSCSRSVFWKNQEAVSQLLRSCFTSFLGSLHVSSLLTNQSSVNNLLGSVVAARAVCPSLAPGYLYLRSCRTIHNVQHVNDVIVGLVAEFAREAAAkwassdlprlkSSQASLSLATSKAREVASLGASLLCATAGLQVVQELYRETIPtwllssrdeklGKVSAVAHIMEGYAMAYMWVLSGGLIWGFEAKMPSWAVSRRRYLIGTHFEYLSRALEGNIKLGCDPATWRAYVSCLVGLVVSsapawiqevRPETLRKLASGLRGWHECELALSLLerggigsipsVMELLHVIN
MANQSKEMMEEESCLLSAAAFEERVIETAKRCQQRHDSPVMWAVEMTRCLKSGSGSVVELGEVLVSYLCFQNNHPSLWKFLDYALTSNLLSPIHILSLLTSRVIPHRRSQPQAFRLYLELLSRYALNFHAVASEDCNVKIIESIEACLQLSRTYNVRVVEFGHALVLSFFDLVVRLIDSLFEDMGLQVGPLDQQSMEIDSIGNFCVGNNEHFEQIRRKNSLLVIEVLNKLMDSSKAMVLLRLIHFNMPESFNGLLQRLQFLEANKLESSKLKTVSQLLARLCDNVRNVPSYDYKLNKHRFIGMLIDTKSLRPMRscnsesswsscwlsFDIFMENSMDGKQLPVTSAiivltriittlrvlNRASWQETFLALWLSALRLVQRERDPPEGPLPHLEARLGILLSIVPLAIANVLAEQANIQLSTLQGSKTSGSIETGCGHGMEEKSLASKKEGLVSSLQALGNFSALLCPPasvaceannaaakaasfisvskNMKDGICSGSPSETLLNSGGNMRHLIVEACIARNLIDTSAYYWPGYVSASVIAVNEFSPVQKSPWSMFMEGAPLNGSLVNLLFSTPASSLAEIEKLYHIALTGSAEERSAAAKILCGASLARGWNIQEHVVRFVVKLLSPPIPPGYTGPRSHLVDHMPMLTAIFFGASSVDTVHILSLHGLVPDVVASLMPLCEVFGSLVPTssskssTGDEPSVYMVFSCAFLFLVRLWKFYRSPHELClsggtlageltleyllllHNSHIASRTSAAQSERNSNLDQLDTVSDDPIYIDHFPKLRAWYCQNKTCIASTLSGLCSGNPVHQVANKILSMIYSKMTKTGasssnsstppsgsasespaCTGEDAYQRPMLPAWEVLEAIPFVLEAILSACAYGRLSSRDLITGLRELVDFLPASIATIISYFSAEISRGIWKAVPMNGTDWPSPAPMLPSIESEIKEILAAVGVSVPCCSAGtspltlplpvavlvsltITFKLTKSLDYIHAVIGPALENCAAGCSWPCIPIIGSLWAQKVRRWHDFIVVSCSRSVFWKNQEAVSQLLRSCFTSFLGSLHVSSLLTNQSSVNNLLGSVVAARAVCPSLAPGYLYLRSCRTIHNVQHVNDVIVGLVaefareaaakwaSSDLPRLKSSQASLSLATSKAREVASLGASLLCATAGLQVVQELYRETIPTWLLSSRDEKLGKVSAVAHIMEGYAMAYMWVLSGGLIWGFEAKMPSWAVSRRRYLIGTHFEYLSRALEGNIKLGCDPATWRAYVSCLVGLVVSSAPAWIQEVRPETLRKLASGLRGWHECELALSLLERGGIGSIPSVMELLHVIN
**************LLSAAAFEERVIETAKRCQQRHDSPVMWAVEMTRCLKSGSGSVVELGEVLVSYLCFQNNHPSLWKFLDYALTSNLLSPIHILSLLTSRVIPHRRSQPQAFRLYLELLSRYALNFHAVASEDCNVKIIESIEACLQLSRTYNVRVVEFGHALVLSFFDLVVRLIDSLFEDMGLQVGPLDQQSMEIDSIGNFCVGNNEHFEQIRRKNSLLVIEVLNKLMDSSKAMVLLRLIHFNMPESFNGLLQRLQFLEANKLESSKLKTVSQLLARLCDNVRNVPSYDYKLNKHRFIGMLIDTKSLRPMRSCNSESSWSSCWLSFDIFMENSMDGKQLPVTSAIIVLTRIITTLRVLNRASWQETFLALWLSALRLVQ**********PHLEARLGILLSIVPLAIANVLAEQANIQLS*********************************SLQALGNFSALLCPPASVACEANNAAAKAASFISV****************LLNSGGNMRHLIVEACIARNLIDTSAYYWPGYVSASVIAVNEFSPVQKSPWSMFMEGAPLNGSLVNLLFSTPASSLAEIEKLYHIALTGSAEERSAAAKILCGASLARGWNIQEHVVRFVVKLLSPPIPPGYTGPRSHLVDHMPMLTAIFFGASSVDTVHILSLHGLVPDVVASLMPLCEVFGSLV**************VYMVFSCAFLFLVRLWKFYRSPHELCLSGGTLAGELTLEYLLLLHNSHI********************VSDDPIYIDHFPKLRAWYCQNKTCIASTLSGLCSGNPVHQVANKILSMIYS*******************************YQRPMLPAWEVLEAIPFVLEAILSACAYGRLSSRDLITGLRELVDFLPASIATIISYFSAEISRGIWKAVPMNGTDWPSPAPMLPSIESEIKEILAAVGVSVPCCSAGTSPLTLPLPVAVLVSLTITFKLTKSLDYIHAVIGPALENCAAGCSWPCIPIIGSLWAQKVRRWHDFIVVSCSRSVFWKNQEAVSQLLRSCFTSFLGSLHVSSLLTNQSSVNNLLGSVVAARAVCPSLAPGYLYLRSCRTIHNVQHVNDVIVGLVAEFAREAAAKWA***********************VASLGASLLCATAGLQVVQELYRETIPTWLLSSRDEKLGKVSAVAHIMEGYAMAYMWVLSGGLIWGFEAKMPSWAVSRRRYLIGTHFEYLSRALEGNIKLGCDPATWRAYVSCLVGLVVSSAPAWIQEVRPETLRKLASGLRGWHECELALSLLERGGIGSIPSVMELLHV**
**************LLSAAAFEERVIETAKRCQQRHDSPVMWAVEMTRCLKSGSGSVVELGEVLVSYLCFQNNHPSLWKFLDYALTSNLLSPIHILSLLTSRVIPHRRSQPQAFRLYLELLSRYALNFHAVASEDCNVKIIESIEACLQLSRTYNVRVVEFGHALVLSFFDLVVRLIDSLFEDMGLQV***************************RRKNSLLVIEVLNKLMDSSKAMVLLRLIHFNMPESFNGLLQRLQFLE***********VSQLLARLCDNVRNVPSYDYKLNKHRFIGMLIDTKSL*PMRSCNSESSWSSCWLSFDIFMENSMDGKQLPVTSAIIVLTRIITTLRVLNRASWQETFLALWLSALRLVQRERDPPEGPLPHLEARLGILLSIVPLAIANVLAE*************************************LVSSLQALGNFSALLCPPASVACEANNAAAKAASFISVSK*****************SGGNMRHLIVEACIARNLIDTSAYYWPGYVSASVIA***********WSMFMEGAPLNGSLVNLLFSTPASSLAEIEKLYHIALTGSAEERSAAAKILCGASLARGWNIQEHVVRFVVKLLSPP************VDHMPMLTAIFFGASSVDTVHILSLHGLVPDVVASLMPLCEVFGSLVPTSSSKSSTGDEPSVYMVFSCAFLFLVRLWKFYRSPHELCLSGGTLAGELTLEYLLLLHN***************************PIYIDHFPKLRAWYCQNKTCIASTLSGLCSGNPVHQVANKILSMIY***********************************PMLPAWEVLEAIPFVLEAILSACAYGRLSSRDLITGLRELVDFLPASIATIISYFSAEISRGIWKAVPMNGTDWPSPAPMLPSIESEIKEILAAVGVSVPCCSAGTSPLTLPLPVAVLVSLTITFKLTKSLDYIHAVIGPALENCAAGCSWPCIPIIGSLWAQKVRRWHDFIVVSCSRSVFWKNQEAVSQLLRSCFTSFLGSLHV*******SSVNNLLGSVVAARAVCPSLAPGYLYLRSCRTIHNVQHVNDVIVGLVAEFARE***********************TSKAREVASLGASLLCATAGLQVVQELYRETIPTW*******************EGYAMAYMWVLSGGLIWGF***************IGTHFEYLSRALEGNIKLGCDPATWRAYVSCLVGLVVSSAPAWIQEVRPETLRKLASGLRGWHECELALSLLERGGIGSIPSVMELLHVIN
**************LLSAAAFEERVIE*********DSPVMWAVEMTRCLKSGSGSVVELGEVLVSYLCFQNNHPSLWKFLDYALTSNLLSPIHILSLLTSRVIPHRRSQPQAFRLYLELLSRYALNFHAVASEDCNVKIIESIEACLQLSRTYNVRVVEFGHALVLSFFDLVVRLIDSLFEDMGLQVGPLDQQSMEIDSIGNFCVGNNEHFEQIRRKNSLLVIEVLNKLMDSSKAMVLLRLIHFNMPESFNGLLQRLQFLEANKLESSKLKTVSQLLARLCDNVRNVPSYDYKLNKHRFIGMLIDTKSLR***********SSCWLSFDIFMENSMDGKQLPVTSAIIVLTRIITTLRVLNRASWQETFLALWLSALRLVQRERDPPEGPLPHLEARLGILLSIVPLAIANVLAEQANIQLSTLQGSKTSGSIETGCGHGMEEKSLASKKEGLVSSLQALGNFSALLCPPASVACEANNAAAKAASFISVSKNMKDGICSGSPSETLLNSGGNMRHLIVEACIARNLIDTSAYYWPGYVSASVIAVNEFSPVQKSPWSMFMEGAPLNGSLVNLLFSTPASSLAEIEKLYHIALTGSAEERSAAAKILCGASLARGWNIQEHVVRFVVKLLSPPIPPGYTGPRSHLVDHMPMLTAIFFGASSVDTVHILSLHGLVPDVVASLMPLCEVFGSLV***********EPSVYMVFSCAFLFLVRLWKFYRSPHELCLSGGTLAGELTLEYLLLLHNSHIA**************DQLDTVSDDPIYIDHFPKLRAWYCQNKTCIASTLSGLCSGNPVHQVANKILSMIYSKM*************************GEDAYQRPMLPAWEVLEAIPFVLEAILSACAYGRLSSRDLITGLRELVDFLPASIATIISYFSAEISRGIWKAVPMNGTDWPSPAPMLPSIESEIKEILAAVGVSVPCCSAGTSPLTLPLPVAVLVSLTITFKLTKSLDYIHAVIGPALENCAAGCSWPCIPIIGSLWAQKVRRWHDFIVVSCSRSVFWKNQEAVSQLLRSCFTSFLGSLHVSSLLTNQSSVNNLLGSVVAARAVCPSLAPGYLYLRSCRTIHNVQHVNDVIVGLVAEFAREA****************************VASLGASLLCATAGLQVVQELYRETIPTWLLSSRDEKLGKVSAVAHIMEGYAMAYMWVLSGGLIWGFEAKMPSWAVSRRRYLIGTHFEYLSRALEGNIKLGCDPATWRAYVSCLVGLVVSSAPAWIQEVRPETLRKLASGLRGWHECELALSLLERGGIGSIPSVMELLHVIN
*************CLLSAAAFEERVIETAKRCQQRHDSPVMWAVEMTRCLKSGSGSVVELGEVLVSYLCFQNNHPSLWKFLDYALTSNLLSPIHILSLLTSRVIPHRRSQPQAFRLYLELLSRYALNFHAVASEDCNVKIIESIEACLQLSRTYNVRVVEFGHALVLSFFDLVVRLIDSLFEDMGLQVGP*****************NNEHFEQIRRKNSLLVIEVLNKLMDSSKAMVLLRLIHFNMPESFNGLLQRLQFLEANKLESSKLKTVSQLLARLCDNVRNVPSYDYKLNKHRFIGMLIDTKSLRPMRSCNSESSWSSCWLSFDIFMENSMDGKQLPVTSAIIVLTRIITTLRVLNRASWQETFLALWLSALRLVQRERDPPEGPLPHLEARLGILLSIVPLAIANVLAEQAN****************************ASKKEGLVSSLQALGNFSALLCPPASVACEANNAAAKAASFISVSKNMKDGICSGSPSETLLNSGGNMRHLIVEACIARNLIDTSAYYWPGYVSASVIAVNEFSPVQKSPWSMFMEGAPLNGSLVNLLFSTPASSLAEIEKLYHIALTGSAEERSAAAKILCGASLARGWNIQEHVVRFVVKLLSPPIPPGYTGPRSHLVDHMPMLTAIFFGASSVDTVHILSLHGLVPDVVASLMPLCEVFGSLVPTSSSKSSTGDEPSVYMVFSCAFLFLVRLWKFYRSPHELCLSGGTLAGELTLEYLLLLHNSHIAS*****************TVSDDPIYIDHFPKLRAWYCQNKTCIASTLSGLCSGNPVHQVANKILSMIYSKMTK***************************YQRPMLPAWEVLEAIPFVLEAILSACAYGRLSSRDLITGLRELVDFLPASIATIISYFSAEISRGIWKAVPMNGTDWPSPAPMLPSIESEIKEILAAVGVSVPCCSAGTSPLTLPLPVAVLVSLTITFKLTKSLDYIHAVIGPALENCAAGCSWPCIPIIGSLWAQKVRRWHDFIVVSCSRSVFWKNQEAVSQLLRSCFTSFLGSLHVSSLLTNQSSVNNLLGSVVAARAVCPSLAPGYLYLRSCRTIHNVQHVNDVIVGLVAEFAREAAAKWASSDLPRLKSSQASLSLATSKAREVASLGASLLCATAGLQVVQELYRETIPTWLLSSRDEKLGKVSAVAHIMEGYAMAYMWVLSGGLIWGFEAK****AVSRRRYLIGTHFEYLSRALEGNIKLGCDPATWRAYVSCLVGLVVSSAPAWIQEVRPETLRKLASGLRGWHECELALSLLERGGIGSIPSVMELLHVIN
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MANQSKEMMEEESCLLSAAAFEERVIETAKRCQQRHDSPVMWAVEMTRCLKSGSGSVVELGEVLVSYLCFQNNHPSLWKFLDYALTSNLLSPIHILSLLTSRVIPHRRSQPQAFRLYLELLSRYALNFHAVASEDCNVKIIESIEACLQLSRTYNVRVVEFGHALVLSFFDLVVRLIDSLFEDMGLQVGPLDQQSMEIDSIGNFCVGNNEHFEQIRRKNSLLVIEVLNKLMDSSKAMVLLRLIHFNMPESFNGLLQRLQFLEANKLESSKLKTVSQLLARLCDNVRNVPSYDYKLNKHRFIGMLIDTKSLRPMRSCNSESSWSSCWLSFDIFMENSMDGKQLPVTSAIIVLTRIITTLRVLNRASWQETFLALWLSALRLVQRERDPPEGPLPHLEARLGILLSIVPLAIANVLAEQANIQLSTLQGSKTSGSIETGCGHGMEEKSLASKKEGLVSSLQALGNFSALLCPPASVACEANNAAAKAASFISVSKNMKDGICSGSPSETLLNSGGNMRHLIVEACIARNLIDTSAYYWPGYVSASVIAVNEFSPVQKSPWSMFMEGAPLNGSLVNLLFSTPASSLAEIEKLYHIALTGSAEERSAAAKILCGASLARGWNIQEHVVRFVVKLLSPPIPPGYTGPRSHLVDHMPMLTAIFFGASSVDTVHILSLHGLVPDVVASLMPLCEVFGSLVPTSSSKSSTGDEPSVYMVFSCAFLFLVRLWKFYRSPHELCLSGGTLAGELTLEYLLLLHNSHIASRTSAAQSERNSNLDQLDTVSDDPIYIDHFPKLRAWYCQNKTCIASTLSGLCSGNPVHQVANKILSMIYSKMTKTGASSSNSSTPPSGSASESPACTGEDAYQRPMLPAWEVLEAIPFVLEAILSACAYGRLSSRDLITGLRELVDFLPASIATIISYFSAEISRGIWKAVPMNGTDWPSPAPMLPSIESEIKEILAAVGVSVPCCSAGTSPLTLPLPVAVLVSLTITFKLTKSLDYIHAVIGPALENCAAGCSWPCIPIIGSLWAQKVRRWHDFIVVSCSRSVFWKNQEAVSQLLRSCFTSFLGSLHVSSLLTNQSSVNNLLGSVVAARAVCPSLAPGYLYLRSCRTIHNVQHVNDVIVGLVAEFAREAAAKWASSDLPRLKSSQASLSLATSKAREVASLGASLLCATAGLQVVQELYRETIPTWLLSSRDEKLGKVSAVAHIMEGYAMAYMWVLSGGLIWGFEAKMPSWAVSRRRYLIGTHFEYLSRALEGNIKLGCDPATWRAYVSCLVGLVVSSAPAWIQEVRPETLRKLASGLRGWHECELALSLLERGGIGSIPSVMELLHVIN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1328 2.2.26 [Sep-21-2011]
Q9LUG91309 Mediator of RNA polymeras yes no 0.942 0.955 0.415 0.0
F4IN691275 Mediator of RNA polymeras no no 0.913 0.951 0.378 0.0
>sp|Q9LUG9|MD33A_ARATH Mediator of RNA polymerase II transcription subunit 33A OS=Arabidopsis thaliana GN=MED33A PE=1 SV=1 Back     alignment and function desciption
 Score =  966 bits (2496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/1327 (41%), Positives = 799/1327 (60%), Gaps = 76/1327 (5%)

Query: 25   VIETAKRCQQRHDSPVMWAVEMTRCLKSGSGSV--VELGEVLVSYLCFQNNHPSLWKFLD 82
            VIE  K  Q+    P +WA +++  LK  +  +   EL EV+VSY+C+ NN P +WKFL+
Sbjct: 13   VIELTKMAQENCVDPRLWASQLSSNLKFFAVELPSTELAEVIVSYICWDNNVPIVWKFLE 72

Query: 83   YALTSNLLSPIHILSLLTSRVIPHRRSQPQAFRLYLELLSRYALNFHAVASEDCNVKIIE 142
             A+   L+SP+ +L+LL  RV+P R +Q  A+R+YLELL R         S     K++ 
Sbjct: 73   RAMALKLVSPLVVLALLADRVVPTRSTQQAAYRIYLELLKRNMFTIKDHISGPHYQKVMI 132

Query: 143  SIEACLQLSRTYNVRVVEFGHALVLSFFDLVVRLIDSLFEDMGLQVGPLDQ--------Q 194
            S+   L+LS  +++   + G  LV   F +V +L+D+   D GL     D         Q
Sbjct: 133  SVSNILRLSELFDLDTSKPGVLLVEFVFKMVSQLLDAALSDEGLLELSQDSSSQWLVKSQ 192

Query: 195  SMEIDSIGNFCVGNNEH---FEQIRRKNSLLVIEVLNKLMDSSKAMVLLRLIHFNMPESF 251
             MEID+   +    NE     E+++  N+++ IE++ + + ++    LL L+  N    +
Sbjct: 193  DMEIDAPERY----NEKTGSLEKLQSLNTIMAIELIAEFLRNTVIARLLYLVSSNRASKW 248

Query: 252  NGLLQRLQFLEANK--LESSKLKTVSQLLARLCDNVRNVPSYDYKLNKHRFIGMLIDTKS 309
            +  +Q++Q L  N   L+ SK+     LL +L  N R   SYD K+   R    ++D  S
Sbjct: 249  HEFVQKVQLLGENSSALKHSKVLNSGDLL-QLISNRRFGYSYDSKVTSARKSNAIVDFGS 307

Query: 310  LRPMRSCNSESSWSSCWLSFDIFMENSMDGKQLPVTSAIIVLTRIITTLRVLNRASWQET 369
            L         +S SS WL  D+  E++MDG Q+  TSAI ++T +  TL+ +N ++W +T
Sbjct: 308  LSSYAGLCHGASLSSLWLPLDLVFEDAMDGYQVNPTSAIEIITGLAKTLKEINGSTWHDT 367

Query: 370  FLALWLSALRLVQRERDPPEGPLPHLEARLGILLSIVPLAIANVLAEQANIQLSTLQGSK 429
            FL LW++ALRLVQRERDP EGP+P L+ RL + L IVPL +AN++ E             
Sbjct: 368  FLGLWIAALRLVQRERDPIEGPIPRLDTRLCMSLCIVPLVVANLIEE------------- 414

Query: 430  TSGSIETGCGHGMEEKSLASKKEGLVSSLQALGNFSALLCPPASVACEANNAAAKAASFI 489
                       G  E  +   ++ LV+SLQ LG+F  LL PP  V   AN AA KA  F+
Sbjct: 415  -----------GKYESVMEKLRDDLVTSLQVLGDFPGLLAPPKCVVSAANKAATKAILFL 463

Query: 490  SVSKNMKDGICSGSPSETLLNSGGNMRHLIVEACIARNLIDTSAYYWPGYVSASVIAVNE 549
            S     K      +  +  +N  GNMRHLIVEACIARN++D SAY WPGYV+  +  + +
Sbjct: 464  SGGNVGKSCFDVINMKDMPVNCSGNMRHLIVEACIARNILDMSAYSWPGYVNGRINQIPQ 523

Query: 550  FSPVQKSPWSMFMEGAPLNGSLVNLLFSTPASSLAEIEKLYHIALTGSAEERSAAAKILC 609
              P +   WS F++GAPLN ++VN L S PASSLAE+EKL+ +A+ GS +E+ +AA +LC
Sbjct: 524  SLPNEVPCWSSFVKGAPLNAAMVNTLVSVPASSLAELEKLFEVAVKGSDDEKISAATVLC 583

Query: 610  GASLARGWNIQEHVVRFVVKLLSPPIPPGYTGPRSHLVDHMPMLTAIFFGASSVDTVHIL 669
            GASL RGWNIQEH V ++ +LLSPP+P  Y+   +HL+ +  ML  +  G  SVD++ I 
Sbjct: 584  GASLTRGWNIQEHTVEYLTRLLSPPVPADYSRAENHLIGYACMLNVVIVGIGSVDSIQIF 643

Query: 670  SLHGLVPDVVASLMPLCEVFGSLVPTSSSKSSTGDEPSVYMVFSCAFLFLVRLWKFYRSP 729
            SLHG+VP +  SLMP+CE FGS  P+ S    +G+  S Y VFS AF  L++LW+F   P
Sbjct: 644  SLHGMVPQLACSLMPICEEFGSYTPSVSWTLPSGEAISAYSVFSNAFTLLLKLWRFNHPP 703

Query: 730  HELCLSG-GTLAGELTLEYLLLLHNSHIASRTSAAQSERNSNLDQLDTV----SDDPIYI 784
             E  +    T+  +LT E+LL + NS++    S+   +R+ N  +L  V    S  P+++
Sbjct: 704  IEHGVGDVPTVGSQLTPEHLLSVRNSYL---VSSEILDRDRNRKRLSEVARAASCQPVFV 760

Query: 785  DHFPKLRAWYCQNKTCIASTLSGLCSGNPVHQVANKILSMIYSKMTKTGASSSNSSTPPS 844
            D FPKL+ WY Q++ CIA+TLSGL  G+PVHQ    +L+M + K+       S +  P +
Sbjct: 761  DSFPKLKVWYRQHQRCIAATLSGLTHGSPVHQTVEALLNMTFGKV-----RGSQTLNPVN 815

Query: 845  GSASESPACTGEDAYQRPMLPAWEVLEAIPFVLEAILSACAYGRLSSRDLITGLRELVDF 904
               S S     ED+  RP  PAW++L+A+P+V++A L+AC +GRLS R L TGL++L DF
Sbjct: 816  SGTSSSSGAASEDSNIRPEFPAWDILKAVPYVVDAALTACTHGRLSPRQLATGLKDLADF 875

Query: 905  LPASIATIISYFSAEISRGIWKAVPMNGTDWPSPAPMLPSIESEIKEILAAVGVSVPCCS 964
            LPAS+ATI+SYFSAE+SRG+WK V MNG DWPSPA  L ++E  I +ILA  GV +P  +
Sbjct: 876  LPASLATIVSYFSAEVSRGVWKPVFMNGVDWPSPATNLSTVEEYITKILATTGVDIPSLA 935

Query: 965  -AGTSPLTLPLPVAVLVSLTITFKLTKSLDYIHAVIGPALENCAAGCSWPCIPIIGSLWA 1023
              G+SP TLPLP+A  VSLTIT+K+ K+ +    + GPALE  AAGC WPC+PI+ SLW 
Sbjct: 936  PGGSSPATLPLPLAAFVSLTITYKIDKASERFLNLAGPALECLAAGCPWPCMPIVASLWT 995

Query: 1024 QKVRRWHDFIVVSCSRSVFWKNQEAVSQLLRSCFTSFLGSLHVSSLLTNQSSVNNLLGSV 1083
            QK +RW DF+V S SR+VF  NQ+AV QLLR+CF++ LG L+ +  ++N   V  LLG  
Sbjct: 996  QKAKRWFDFLVFSASRTVFLHNQDAVIQLLRNCFSATLG-LNAAP-MSNDGGVGALLGHG 1053

Query: 1084 VAAR---AVCPSLAPGYLYLRSCRTIHNVQHVNDVIVGLVAEFAREAAAKWASSD-LPRL 1139
              +     + P +APG LYLR  R + +   V++ I+ L+     + A    S + L +L
Sbjct: 1054 FGSHFYGGISP-VAPGILYLRMYRALRDTVSVSEEILSLLIHSVEDIAQNRLSKEKLEKL 1112

Query: 1140 KS-------SQASLSLATSKAREVASLGASLLCATAGLQVVQELYRETIPTWLLSSR--D 1190
            K+        Q+SL+ A ++ +  ASL ASL+  T GL VV  L +ETIP+W LS+   D
Sbjct: 1113 KTVKNGSRYGQSSLATAMTQVKLAASLSASLVWLTGGLGVVHVLIKETIPSWFLSTDKSD 1172

Query: 1191 EKLGKVSAVAHIMEGYAMAYMWVLSGGLIWGFEAKMPSWAVSRRRYLIGTHFEYLSRALE 1250
             + G    VA  + G+A+AY  VL G L WG +++  + +  RR+ ++G+H E+++ AL+
Sbjct: 1173 REQGPSDLVAE-LRGHALAYFVVLCGALTWGVDSRSSA-SKRRRQAILGSHLEFIASALD 1230

Query: 1251 GNIKLGCDPATWRAYVSCLVGLVVSSAPAWIQEVRPETLRKLASGLRGWHECELALSLLE 1310
            G I +GC+ ATWR Y+S LV L+VS  P W+ E+  E L+ L++GLR W + ELA+ LL 
Sbjct: 1231 GKISVGCETATWRTYISGLVSLMVSCLPLWVTEIDTEVLKSLSNGLRKWGKDELAIVLLS 1290

Query: 1311 RGGIGSI 1317
             GG+ ++
Sbjct: 1291 LGGLKTM 1297
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator.
Arabidopsis thaliana (taxid: 3702)
>sp|F4IN69|MD33B_ARATH Mediator of RNA polymerase II transcription subunit 33B OS=Arabidopsis thaliana GN=MED33B PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1328
2254390741330 PREDICTED: uncharacterized protein LOC10 0.987 0.986 0.662 0.0
2960858191342 unnamed protein product [Vitis vinifera] 0.980 0.970 0.657 0.0
239056187 1472 unknown gene [Vitis vinifera] 0.982 0.886 0.633 0.0
2241394241331 predicted protein [Populus trichocarpa] 0.967 0.965 0.647 0.0
1478055931237 hypothetical protein VITISV_036441 [Viti 0.886 0.951 0.614 0.0
3575067631320 hypothetical protein MTR_7g074290 [Medic 0.968 0.974 0.564 0.0
3565668261322 PREDICTED: uncharacterized protein LOC10 0.959 0.963 0.549 0.0
2555578851000 conserved hypothetical protein [Ricinus 0.748 0.994 0.624 0.0
3264988951330 predicted protein [Hordeum vulgare subsp 0.961 0.960 0.509 0.0
3265015741313 predicted protein [Hordeum vulgare subsp 0.948 0.959 0.501 0.0
>gi|225439074|ref|XP_002264843.1| PREDICTED: uncharacterized protein LOC100258764 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1752 bits (4537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 879/1327 (66%), Positives = 1058/1327 (79%), Gaps = 15/1327 (1%)

Query: 17   SAAAFEERVIETAKRCQQRHDSPVMWAVEMTRCLKSGSGSV--VELGEVLVSYLCFQNNH 74
            +A  FEERV E  KRCQ+R + P++WA EM +CL S    +  VELG+VLVS LCF +N 
Sbjct: 4    NATLFEERVKEALKRCQERREPPLIWATEMVKCLDSAGLGLPSVELGQVLVSQLCFAHNC 63

Query: 75   PSLWKFLDYALTSNLLSPIHILSLLTSRVIPHRRSQPQAFRLYLELLSRYALNFHAVASE 134
            PS+WKFLD+AL+S LLSP+H+LSLLTSR+IPHR SQP+A+RLYLELLSRYA +FH V  +
Sbjct: 64   PSMWKFLDHALSSRLLSPLHVLSLLTSRIIPHRWSQPEAYRLYLELLSRYAFSFHPVEPD 123

Query: 135  DCNVKIIESIEACLQLSRTYNVRVVEFGHALVLSFFDLVVRLIDSLFEDMGLQVGPLDQQ 194
                +II+S++A LQLS+TY V V+E GH +VL FF +VV L+DS  +D GL V  LD+ 
Sbjct: 124  ASKERIIKSVDAALQLSKTYQVHVLELGHTMVLFFFSIVVGLLDSTLDDWGLPVTFLDRA 183

Query: 195  S----------MEIDSIGNFCVGNNEHFEQIRRKNSLLVIEVLNKLMDSSKAMVLLRLIH 244
            S          M+IDS GN     +EH EQ+RR NS L +EVL  LM++ KA VLLRL+H
Sbjct: 184  SGVARSGDYLNMDIDSKGNKNFKQSEHREQMRRTNSFLAMEVLGTLMENRKAKVLLRLVH 243

Query: 245  FNMPESFNGLLQRLQFLEANKLESSKLKTVSQLLARLCDNVRNVPSYDYKLNKHRFIGML 304
             NMPE FNGLL+R+QFLEA+KL SS LK+ +QLL RL  N+R V  ++Y+LNKH+ IGML
Sbjct: 244  LNMPEGFNGLLRRIQFLEAHKLASSILKSANQLLVRLSANIRGVLDFEYQLNKHQLIGML 303

Query: 305  IDTKSLRPMRSCNSESSWSSCWLSFDIFMENSMDGKQLPVTSAIIVLTRIITTLRVLNRA 364
            ID  S + +  CN E+  S+CW+ FDI+MEN MD K LPV S I++L   I TL+  NRA
Sbjct: 304  IDIGSNKLVSGCNFEAVQSACWVPFDIYMENVMDVKHLPVRSTIVILRETIRTLQGFNRA 363

Query: 365  SWQETFLALWLSALRLVQRERDPPEGPLPHLEARLGILLSIVPLAIANVLAEQANIQLST 424
            SWQETFLALWLSALRLVQRERDP EGP+PHLE+RL +LLSI PLAI  +L ++ N   S+
Sbjct: 364  SWQETFLALWLSALRLVQRERDPLEGPIPHLESRLCMLLSIAPLAITQLLEDEVNSCNSS 423

Query: 425  LQGSKTSGSIETGCGHGMEEKSLASKKEGLVSSLQALGNFSALLCPPASVACEANNAAAK 484
             QG +  G  E G GH M+ K  AS+K GL+SSLQ LG+FSALLCPP+S+A  AN AAAK
Sbjct: 424  SQGGREYGYTEIGYGHEMDRKCHASRKHGLISSLQVLGHFSALLCPPSSIADAANLAAAK 483

Query: 485  AASFISVSKNMKDGICSGSPSETLLNSGGNMRHLIVEACIARNLIDTSAYYWPGYVSASV 544
            AA FIS SKN KD +  GS   T++ SGGNMRHLIVEACIAR LIDTSAY+WPGYVSASV
Sbjct: 484  AAGFISNSKNGKDSLGGGSHGNTIVKSGGNMRHLIVEACIARKLIDTSAYFWPGYVSASV 543

Query: 545  IAVNEFSPVQKSPWSMFMEGAPLNGSLVNLLFSTPASSLAEIEKLYHIALTGSAEERSAA 604
            I++++ SP+Q SPWS FMEGAPL G L++ L + PASSLAE+EKLYH+AL GS EE+SAA
Sbjct: 544  ISMSDSSPIQGSPWSTFMEGAPLTGPLIDALIAIPASSLAELEKLYHVALNGSEEEKSAA 603

Query: 605  AKILCGASLARGWNIQEHVVRFVVKLLSPPIPPGYTGPRSHLVDHMPMLTAIFFGASSVD 664
            AKILCGASL RGWNIQEHVV  +VKLLSPPIPP +TG RSHL+D++PML+AI FGASS+D
Sbjct: 604  AKILCGASLRRGWNIQEHVVHSMVKLLSPPIPPNFTGTRSHLIDYLPMLSAILFGASSID 663

Query: 665  TVHILSLHGLVPDVVASLMPLCEVFGSLVPTSSSKSSTGDEPSVYMVFSCAFLFLVRLWK 724
            TVHILSLHG+VP+V A+LMPLCE FGS+ PTS+ KSS GDE S+YMVFS AFLFL+RLWK
Sbjct: 664  TVHILSLHGVVPEVAAALMPLCEAFGSVTPTSNHKSSMGDELSIYMVFSSAFLFLLRLWK 723

Query: 725  FYRSPHELCLS--GGTLAGELTLEYLLLLHNSHIASRTSAAQSERNSNLDQLDTVSDDPI 782
            FY+ P E C+S  G  +  ELTLEYLL+L N+ IAS  SAA  E +S+L+++++ SD P+
Sbjct: 724  FYKPPLEQCISGRGRAIGSELTLEYLLILRNNRIASHNSAAHDETSSSLNRIESTSDKPV 783

Query: 783  YIDHFPKLRAWYCQNKTCIASTLSGLCSGNPVHQVANKILSMIYSKMTKTGASSSNSSTP 842
            YID +PKLRAWYCQN++CIASTLSGLC+G+PVHQVANKIL+MIY KMTK+GASS N STP
Sbjct: 784  YIDSYPKLRAWYCQNRSCIASTLSGLCNGSPVHQVANKILNMIYWKMTKSGASSGNPSTP 843

Query: 843  PSGSASESPACTGEDAYQRPMLPAWEVLEAIPFVLEAILSACAYGRLSSRDLITGLRELV 902
               S S S A TGEDAYQRPMLPAWEVLEA+P VLEAIL+ACA+G LSSRDL TGLR+LV
Sbjct: 844  SGSSISGSTASTGEDAYQRPMLPAWEVLEAVPLVLEAILTACAHGILSSRDLTTGLRDLV 903

Query: 903  DFLPASIATIISYFSAEISRGIWKAVPMNGTDWPSPAPMLPSIESEIKEILAAVGVSVPC 962
            DFLPAS+  IISYFSAE+SRGIWK VPMNG DWPSPA  L S+ESEIKEILAA+GV  P 
Sbjct: 904  DFLPASLVVIISYFSAEVSRGIWKLVPMNGKDWPSPAANLLSVESEIKEILAAIGVDAPR 963

Query: 963  CSAGTSPLTLPLPVAVLVSLTITFKLTKSLDYIHAVIGPALENCAAGCSWPCIPIIGSLW 1022
            CS G S   LPLP+A LVSLTITFKL K L+YIHAV G +L NCA+ C WP +PIIGSLW
Sbjct: 964  CSPGDSTAMLPLPMAALVSLTITFKLDKRLEYIHAVAGTSLANCASSCPWPSMPIIGSLW 1023

Query: 1023 AQKVRRWHDFIVVSCSRSVFWKNQEAVSQLLRSCFTSFLGSLHVS-SLLTNQSSVNNLLG 1081
             QKVRRWH+FIV SCS SVF +++EAV+QLLRSCFTSFLG  HVS S L +Q+ V  LLG
Sbjct: 1024 VQKVRRWHNFIVGSCSLSVFRQDKEAVAQLLRSCFTSFLGLFHVSKSPLASQNGVVGLLG 1083

Query: 1082 SVVAARAVCPSLAPGYLYLRSCRTIHNVQHVNDVIVGLVAEFAREAAAKWASSDLPRLKS 1141
             +  A  VCPS+APG LYLRSCRTIHNVQ+VN VI+GLVAEFARE A++WAS D  +LKS
Sbjct: 1084 DINWAHCVCPSIAPGLLYLRSCRTIHNVQYVNHVIIGLVAEFARELASRWASKDSQQLKS 1143

Query: 1142 SQASLSLATSKAREVASLGASLLCATAGLQVVQELYRETIPTWLLSSRDEKLGKVSAVAH 1201
            SQ+SL+LAT+K +EVA+LGASLLC T G+Q+VQELY+ET+PTWLLS+R+EKLG+VS+V+ 
Sbjct: 1144 SQSSLALATTKVKEVATLGASLLCVTGGIQLVQELYQETLPTWLLSTREEKLGEVSSVSR 1203

Query: 1202 IMEGYAMAYMWVLSGGLIWGFEAKMPSWAVSRRRYLIGTHFEYLSRALEGNIKLGCDPAT 1261
            IMEGYAMAY+ VLSG  IWG  A+ PSW  S R  ++ TH ++L+  LEGNI LGCDPAT
Sbjct: 1204 IMEGYAMAYLLVLSGSFIWGLGARPPSWTFSIRARIVRTHLDFLAGVLEGNISLGCDPAT 1263

Query: 1262 WRAYVSCLVGLVVSSAPAWIQEVRPETLRKLASGLRGWHECELALSLLERGGIGSIPSVM 1321
            W++YVSCLVGL+VS AP WI++V+ ETLRKLA+GLRGWHECELALSLLE+GG  ++ S  
Sbjct: 1264 WKSYVSCLVGLLVSLAPTWIRDVKRETLRKLANGLRGWHECELALSLLEKGGPATLGSAA 1323

Query: 1322 ELLHVIN 1328
            EL++VIN
Sbjct: 1324 ELVNVIN 1330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296085819|emb|CBI31143.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|239056187|emb|CAQ58623.1| unknown gene [Vitis vinifera] Back     alignment and taxonomy information
>gi|224139424|ref|XP_002323105.1| predicted protein [Populus trichocarpa] gi|222867735|gb|EEF04866.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147805593|emb|CAN60712.1| hypothetical protein VITISV_036441 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357506763|ref|XP_003623670.1| hypothetical protein MTR_7g074290 [Medicago truncatula] gi|355498685|gb|AES79888.1| hypothetical protein MTR_7g074290 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356566826|ref|XP_003551628.1| PREDICTED: uncharacterized protein LOC100803055 [Glycine max] Back     alignment and taxonomy information
>gi|255557885|ref|XP_002519971.1| conserved hypothetical protein [Ricinus communis] gi|223540735|gb|EEF42295.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|326498895|dbj|BAK02433.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|326501574|dbj|BAK02576.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1328
TAIR|locus:20880501309 RFR1 "AT3G23590" [Arabidopsis 0.659 0.669 0.409 4.3e-237
TAIR|locus:20393561275 REF4 "AT2G48110" [Arabidopsis 0.573 0.596 0.424 1.6e-218
TAIR|locus:2088050 RFR1 "AT3G23590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1774 (629.5 bits), Expect = 4.3e-237, Sum P(2) = 4.3e-237
 Identities = 370/903 (40%), Positives = 529/903 (58%)

Query:   441 GMEEKSLASKKEGLVSSLQALGNFSALLCPPXXXXXXXXXXXXXXXXXXXXXXNMKDGIC 500
             G  E  +   ++ LV+SLQ LG+F  LL PP                        K    
Sbjct:   415 GKYESVMEKLRDDLVTSLQVLGDFPGLLAPPKCVVSAANKAATKAILFLSGGNVGKSCFD 474

Query:   501 SGSPSETLLNSGGNMRHLIVEACIARNLIDTSAYYWPGYVSASVIAVNEFSPVQKSPWSM 560
               +  +  +N  GNMRHLIVEACIARN++D SAY WPGYV+  +  + +  P +   WS 
Sbjct:   475 VINMKDMPVNCSGNMRHLIVEACIARNILDMSAYSWPGYVNGRINQIPQSLPNEVPCWSS 534

Query:   561 FMEGAPLNGSLVNLLFSTPASSLAEIEKLYHIALTGSAEERSAAAKILCGASLARGWNIQ 620
             F++GAPLN ++VN L S PASSLAE+EKL+ +A+ GS +E+ +AA +LCGASL RGWNIQ
Sbjct:   535 FVKGAPLNAAMVNTLVSVPASSLAELEKLFEVAVKGSDDEKISAATVLCGASLTRGWNIQ 594

Query:   621 EHVVRFVVKLLSPPIPPGYTGPRSHLVDHMPMLTAIFFGASSVDTVHILSLHGLVPDVVA 680
             EH V ++ +LLSPP+P  Y+   +HL+ +  ML  +  G  SVD++ I SLHG+VP +  
Sbjct:   595 EHTVEYLTRLLSPPVPADYSRAENHLIGYACMLNVVIVGIGSVDSIQIFSLHGMVPQLAC 654

Query:   681 SLMPLCEVFGSLVPTXXXXXXTGDEPSVYMVFSCAFLFLVRLWKFYRSPHEL-CXXXXXX 739
             SLMP+CE FGS  P+      +G+  S Y VFS AF  L++LW+F   P E         
Sbjct:   655 SLMPICEEFGSYTPSVSWTLPSGEAISAYSVFSNAFTLLLKLWRFNHPPIEHGVGDVPTV 714

Query:   740 XXXXXXXXXXXXHNSHIASRTSAAQSERNSNLDQLD-TVSDDPIYIDHFPKLRAWYCQNK 798
                          NS++ S     +      L ++    S  P+++D FPKL+ WY Q++
Sbjct:   715 GSQLTPEHLLSVRNSYLVSSEILDRDRNRKRLSEVARAASCQPVFVDSFPKLKVWYRQHQ 774

Query:   799 TCIASTLSGLCSGNPVHQVANKILSMIYSKMTKTGXXXXXXXXXXXXXXXXXXXCTGEDA 858
              CIA+TLSGL  G+PVHQ    +L+M + K+  +                       ED+
Sbjct:   775 RCIAATLSGLTHGSPVHQTVEALLNMTFGKVRGS-----QTLNPVNSGTSSSSGAASEDS 829

Query:   859 YQRPMLPAWEVLEAIPFVLEAILSACAYGRLSSRDLITGLRELVDFLPASIATIISYFSA 918
               RP  PAW++L+A+P+V++A L+AC +GRLS R L TGL++L DFLPAS+ATI+SYFSA
Sbjct:   830 NIRPEFPAWDILKAVPYVVDAALTACTHGRLSPRQLATGLKDLADFLPASLATIVSYFSA 889

Query:   919 EISRGIWKAVPMNGTDWPSPAPMLPSIESEIKEILAAVGVSVPCCSAGXXXXXXXXX-XX 977
             E+SRG+WK V MNG DWPSPA  L ++E  I +ILA  GV +P  + G            
Sbjct:   890 EVSRGVWKPVFMNGVDWPSPATNLSTVEEYITKILATTGVDIPSLAPGGSSPATLPLPLA 949

Query:   978 XXXXXXITFKLTKSLDYIHAVIGPALENCAAGCSWPCIPIIGSLWAQKVRRWHDFIVVSC 1037
                   IT+K+ K+ +    + GPALE  AAGC WPC+PI+ SLW QK +RW DF+V S 
Sbjct:   950 AFVSLTITYKIDKASERFLNLAGPALECLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSA 1009

Query:  1038 SRSVFWKNQEAVSQLLRSCFTSFLGSLHVSSLLTNQSSVNNLLGSVVAAR---AVCPSLA 1094
             SR+VF  NQ+AV QLLR+CF++ LG L+ + + +N   V  LLG    +     + P +A
Sbjct:  1010 SRTVFLHNQDAVIQLLRNCFSATLG-LNAAPM-SNDGGVGALLGHGFGSHFYGGISP-VA 1066

Query:  1095 PGYLYLRSCRTIHNVQHVNDVIVGLVXXXXXXXXXXXXSSD-LPRLKS-------SQASL 1146
             PG LYLR  R + +   V++ I+ L+            S + L +LK+        Q+SL
Sbjct:  1067 PGILYLRMYRALRDTVSVSEEILSLLIHSVEDIAQNRLSKEKLEKLKTVKNGSRYGQSSL 1126

Query:  1147 SLATSKAREVASLGASLLCATAGLQVVQELYRETIPTWLLSS--RDEKLGKVSAVAHIME 1204
             + A ++ +  ASL ASL+  T GL VV  L +ETIP+W LS+   D + G    VA +  
Sbjct:  1127 ATAMTQVKLAASLSASLVWLTGGLGVVHVLIKETIPSWFLSTDKSDREQGPSDLVAEL-R 1185

Query:  1205 GYAMAYMWVLSGGLIWGFEAKMPSWAVSRRRYLIGTHFEYLSRALEGNIKLGCDPATWRA 1264
             G+A+AY  VL G L WG +++  S +  RR+ ++G+H E+++ AL+G I +GC+ ATWR 
Sbjct:  1186 GHALAYFVVLCGALTWGVDSRS-SASKRRRQAILGSHLEFIASALDGKISVGCETATWRT 1244

Query:  1265 YVSCLVGLVVSSAPAWIQEVRPETLRKLASGLRGWHECELALSLLERGGIGSIPSVME-L 1323
             Y+S LV L+VS  P W+ E+  E L+ L++GLR W + ELA+ LL  GG+ ++    + +
Sbjct:  1245 YISGLVSLMVSCLPLWVTEIDTEVLKSLSNGLRKWGKDELAIVLLSLGGLKTMDYAADFI 1304

Query:  1324 LHV 1326
             +H+
Sbjct:  1305 IHL 1307
GO:0003674 "molecular_function" evidence=ND
GO:0016592 "mediator complex" evidence=IDA
GO:2000762 "regulation of phenylpropanoid metabolic process" evidence=IMP
GO:0007155 "cell adhesion" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:2039356 REF4 "AT2G48110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LUG9MD33A_ARATHNo assigned EC number0.41590.94200.9556yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
40N03_60
SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (1312 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1328
PF11277990 Med24_N: Mediator complex subunit 24 N-terminal; I 96.5
PRK02866147 cyanate hydratase; Validated 83.14
>PF11277 Med24_N: Mediator complex subunit 24 N-terminal; InterPro: IPR021429 This subunit of the Mediator complex appears to be conserved only from insects to humans Back     alignment and domain information 
Probab=96.50  E-value=0.27  Score=63.10  Aligned_cols=593  Identities=20%  Similarity=0.270  Sum_probs=329.5

Q ss_pred             HHHhhCCCcchHHHHHHHHhhcCCCch---hhhHHHHHHhhhccC-CCcchhHHHHHHHHcccchhHHHHhhhhcccccC
Q 000727           31 RCQQRHDSPVMWAVEMTRCLKSGSGSV---VELGEVLVSYLCFQN-NHPSLWKFLDYALTSNLLSPIHILSLLTSRVIPH  106 (1328)
Q Consensus        31 ~AQer~~~PLlWAvevas~l~s~~Gv~---~ELAevLVs~LCf~n-N~Ps~WKfLe~ALssrLvsPLhvLALLSsRVIP~  106 (1328)
                      .|=.++-+|..|++-+=..+..  |++   .+||+.|+.+..-+. ..|-+=.||++|+++++|+...+|.-++.--   
T Consensus        12 ~aW~ERw~d~~w~i~iK~~~~~--g~~~d~~~LAe~LL~qa~iG~~Pn~LiLSYLk~al~sqlvs~~~vl~~I~k~~---   86 (990)
T PF11277_consen   12 RAWRERWTDIQWGINIKKIIPR--GVSGDIYNLAECLLQQAFIGPSPNPLILSYLKYALSSQLVSYAAVLEAISKFD---   86 (990)
T ss_pred             HHHHhcCChhhHHHHHHHHccC--CCcccHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHhcchhHHHHHHHHhhcc---
Confidence            3444567889999999888875  443   889999999876654 6677999999999999999999887664321   


Q ss_pred             CcCchhHHHHHHHHhhhcccccccccccchhhHHHHhHHHHhhhccccCccccccceeehHHHHHHHHHHHHh---hhcc
Q 000727          107 RRSQPQAFRLYLELLSRYALNFHAVASEDCNVKIIESIEACLQLSRTYNVRVVEFGHALVLSFFDLVVRLIDS---LFED  183 (1328)
Q Consensus       107 R~~qPeAYRLYLELL~r~aFs~~~~i~~pn~~kimkSID~~L~LS~~~g~~~~e~G~~vV~F~f~iv~~LiD~---~ldD  183 (1328)
                      ..++|.--.--||++...-=      ...|+-|                   .|-++ +--=+++++.-|+-+   .++.
T Consensus        87 ~f~k~~c~~~ll~~l~~~~~------~~sC~gk-------------------~EE~i-L~~Alls~v~WLL~~~~~~l~~  140 (990)
T PF11277_consen   87 DFSKPHCINALLELLESIID------GLSCRGK-------------------AEECI-LCRALLSLVHWLLQCYEYSLEK  140 (990)
T ss_pred             ccchhHHHHHHHHHHHHhcC------CcccCCc-------------------chHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            13445555555555543111      1122211                   22222 222244444444433   2221


Q ss_pred             cCCCCCCCCCCcccccCCCCcccccchhHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHhhcCCchhhhHHHHHHHHhh
Q 000727          184 MGLQVGPLDQQSMEIDSIGNFCVGNNEHFEQIRRKNSLLVIEVLNKLMDSSKAMVLLRLIHFNMPESFNGLLQRLQFLEA  263 (1328)
Q Consensus       184 ~GL~~~~~e~qdMeiD~~g~~~~k~~E~~EqLrk~NT~mAiEvi~~~l~nK~ts~iLrLv~~Nmpe~w~~f~QRLq~lea  263 (1328)
                      .         +++.        +-..++.+.     .-+..+++++++++++...+|++++.|=||-|+...|+.+-+++
T Consensus       141 ~---------~e~~--------~~~~~~e~~-----l~~~~~~L~~i~~s~f~~aLL~Iak~ee~e~w~~v~q~~~~l~~  198 (990)
T PF11277_consen  141 L---------RENN--------ELSAEQEEI-----LEKCCQRLEKILESTFLRALLYIAKLEEPESWNEVEQKCAKLKN  198 (990)
T ss_pred             H---------hhcC--------CCcchHHHH-----HHHHHHHHHHHHcCchHHHHHHHhhhccHhHHHHHHHHHHHHHH
Confidence            1         1110        101234443     34678999999999999999999999999999999999999987


Q ss_pred             hhhh------hhhhhhhHHHHHHHhhhccccccccccccccceeeeecccCCCCCccccCcCCcccccchhhhHhhhccC
Q 000727          264 NKLE------SSKLKTVSQLLARLCDNVRNVPSYDYKLNKHRFIGMLIDTKSLRPMRSCNSESSWSSCWLSFDIFMENSM  337 (1328)
Q Consensus       264 ~~la------~~~~k~~~~~l~~L~~~i~~V~~~~yk~~~~~~~~~l~~~~s~~s~~g~~~Gas~Sa~WlPfDiymEdaM  337 (1328)
                      ....      ..++...-+.+..+..++=.-..    .+..+..+.+   .++            =..+|    ++|-.|
T Consensus       199 ~l~~~~~~~~~~tL~~~l~kl~sl~~~~~~m~~----v~~~~~~e~~---~~s------------VqaLI----~vE~ll  255 (990)
T PF11277_consen  199 SLSNSGFVKSNVTLRDQLEKLASLEKSIPSMKP----VNSEQLSETI---FPS------------VQALI----AVEVLL  255 (990)
T ss_pred             HhcccccccCchHHHHHHHHHHHHHhcCccccC----CCcccCCCCC---cch------------HHHHH----HHHHHH
Confidence            4444      11122233333333333221111    1111110000   000            01233    334332


Q ss_pred             CCCccCcchhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhhhcCCCCCCCCCcccchhhhhhhhhhHHHHHHHHHh
Q 000727          338 DGKQLPVTSAIIVLTRIITTLRVLNRASWQETFLALWLSALRLVQRERDPPEGPLPHLEARLGILLSIVPLAIANVLAEQ  417 (1328)
Q Consensus       338 DG~ql~~tSaIEiL~~liKtlq~vN~asW~etFlaLWiaaLRLVQReRdp~EGPiPhldsRLCmLLsI~pLaia~il~Ee  417 (1328)
                           +.++-++-+.+-...+|.+.+=++.+-|.=+|=|.+=-.-   |..||.   -|.+.|   +.+=|=|=.||++=
T Consensus       256 -----Npt~dtq~lVeqL~mlqrlk~~~~~~ly~EIirACfl~L~---e~~~ts---~E~~w~---AFtFlKlPqIl~~L  321 (990)
T PF11277_consen  256 -----NPTSDTQQLVEQLMMLQRLKGIPNPRLYCEIIRACFLGLI---ESPETS---EELKWC---AFTFLKLPQILKQL  321 (990)
T ss_pred             -----ccCccHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhc---cCCCCC---cchhhh---hhhhhhHHHHHHHH
Confidence                 4577888888888999999999999999999988765332   233444   578888   44333333444432


Q ss_pred             hhhhhhhccCCCCCCCcccCCCCCCcchhhhhhhhhhhhhhhhcccccccccCchhhhhHHHHHHHHHhhhhhccccCCC
Q 000727          418 ANIQLSTLQGSKTSGSIETGCGHGMEEKSLASKKEGLVSSLQALGNFSALLCPPASVACEANNAAAKAASFISVSKNMKD  497 (1328)
Q Consensus       418 ~~~~l~~~~~~~~~g~~~~~~~k~~~~~~~~~~R~gLisSLQvLG~y~gLL~PP~~vv~aANqAA~KAa~FiSg~~~~~g  497 (1328)
                      -...    ++.+.  +     +  +..    .-..+++.++..|=++..||                             
T Consensus       322 ~~~~----~~~~~--~-----d--~~~----~~~~dl~~Afe~Ll~~~pLL-----------------------------  355 (990)
T PF11277_consen  322 HALS----RGDKP--Q-----D--KIA----EYSEDLVEAFELLLQLTPLL-----------------------------  355 (990)
T ss_pred             HHhc----cCCCc--c-----c--ccc----cccHHHHHHHHHHHccchhh-----------------------------
Confidence            2210    00000  0     0  011    44678899999999999986                             


Q ss_pred             CcccCCCCCCccccccchhHHHHHHHhhhcccccc--ceeecccccccccccccCCCCCCCccchhccCCCCchhhhhhh
Q 000727          498 GICSGSPSETLLNSGGNMRHLIVEACIARNLIDTS--AYYWPGYVSASVIAVNEFSPVQKSPWSMFMEGAPLNGSLVNLL  575 (1328)
Q Consensus       498 ~~~~~~~~d~~~n~~GNmrHLIVEaCIaRnLlDtS--~Y~WpGyv~~~~~~~~~s~p~q~spWs~fM~GspL~~~L~naL  575 (1328)
                           +..|  +||.-|.--.+.|-|-..|||+-+  .++     .    +.-+    +.+++                 
T Consensus       356 -----D~~D--~kc~Cn~v~~LL~e~~K~~lise~~~k~l-----~----~kR~----~~~~~-----------------  398 (990)
T PF11277_consen  356 -----DKMD--QKCNCNCVECLLNELVKLGLISESQVKNL-----L----AKRE----EMSPG-----------------  398 (990)
T ss_pred             -----HHHh--hhcCCcHHHHHHHHHHHcCcccHHHHHHH-----H----HHhh----hhhhh-----------------
Confidence                 2233  478889999999999999999865  211     0    0000    00111                 


Q ss_pred             hcCCCCcHHHHHHHHHHHccCChhhhhhHhHHhcccccccccchhhHHHHHHHHhcCCCCCCCCCCCcccccccchhHHH
Q 000727          576 FSTPASSLAEIEKLYHIALTGSAEERSAAAKILCGASLARGWNIQEHVVRFVVKLLSPPIPPGYTGPRSHLVDHMPMLTA  655 (1328)
Q Consensus       576 v~tPAsSlaElEKly~iA~~GS~eEk~aAA~ILCGASL~RGWnIQEH~v~~vvkLLSpp~P~~~sG~~s~li~~~pmLna  655 (1328)
                                   +++.- |+..  +.-.--||.          -|-++-=|+|.|+    +||+-...-+++   ||.=
T Consensus       399 -------------l~~~~-n~~~--qp~~~lIlR----------AE~tl~~IlKtl~----ad~~k~~e~ll~---vL~~  445 (990)
T PF11277_consen  399 -------------LQKLE-NTNQ--QPNPKLILR----------AEPTLTGILKTLD----ADYSKSQEGLLG---VLCQ  445 (990)
T ss_pred             -------------hhhcc-cCCC--CCCcceEEe----------cccHHHHHHHHhc----cccccchHHHHH---HHHh
Confidence                         11000 1111  000001111          2556677788877    555533322221   3333


Q ss_pred             HHhcCCcccce-eeecccCcchhhhhhhhhhhhhhcCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHhhhcCCCcchhhc
Q 000727          656 IFFGASSVDTV-HILSLHGLVPDVVASLMPLCEVFGSLVPTSSSKSSTGDEPSVYMVFSCAFLFLVRLWKFYRSPHELCL  734 (1328)
Q Consensus       656 ~l~GissvD~v-hIlSlhGlvP~~Aa~LMPiCEvFGS~~P~~~~~~~~gee~S~~~VFS~AFl~LlRLWkF~~PPlE~~l  734 (1328)
                      ++.| +|.|.| -...--|=.+.+|..|.=+=|.--.+ |.-.-+    ...+-...|=.-|+.|-|.=+-|-       
T Consensus       446 mlsG-~SfdlilAaAa~~GkLk~FaskLIk~Ne~~K~~-~~e~~K----~a~~Ra~LFDiSFLMLc~i~q~YG-------  512 (990)
T PF11277_consen  446 MLSG-KSFDLILAAAAVTGKLKSFASKLIKCNEFSKQI-SGEGSK----SAQTRALLFDISFLMLCSIVQTYG-------  512 (990)
T ss_pred             hccC-CcHHHHHHHHHHcccHHHHHHHHHhhccccccC-Cccccc----cchhHHHHHhhHHHHHHHHHHHcC-------
Confidence            3332 344432 12233577777777777766654331 111111    123445788888998877665542       


Q ss_pred             cCCcccCcCChhHHHHhccccccccccchhhhcccCCCCCcccCCCCeeeccCchhhHHHhhchh----hHHhhhccccC
Q 000727          735 SGGTLAGELTLEYLLLLHNSHIASRTSAAQSERNSNLDQLDTVSDDPIYIDHFPKLRAWYCQNKT----CIASTLSGLCS  810 (1328)
Q Consensus       735 ~~~~vgs~ltleyLLllrN~~~~~~~~~~~~~~~~~~~~~~~~s~~Pv~iDSFPKLr~WY~Q~qa----CiAStlSgl~~  810 (1328)
                            +|.-+.     -|+                              ||  =..-|+++.--    +. |.-..+. 
T Consensus       513 ------sevvls-----e~~------------------------------~S--fFe~Wv~~~m~e~~~~~-sP~~~~~-  547 (990)
T PF11277_consen  513 ------SEVVLS-----ENG------------------------------DS--FFEKWVRECMPEEGKSK-SPDQPLA-  547 (990)
T ss_pred             ------CcEEEC-----CCC------------------------------Cc--HHHHHHHHhcccccCCC-Chhhhhh-
Confidence                  322111     000                              11  13456654210    00 0001111 


Q ss_pred             CCchhHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCchh-HHhhhhhhHHHHHHhhhccCCC
Q 000727          811 GNPVHQVANKILSMIYSKMTKTGASSSNSSTPPSGSASESPACTGEDAYQRPMLPAW-EVLEAIPFVLEAILSACAYGRL  889 (1328)
Q Consensus       811 g~pvhqv~~~lL~mm~~K~~k~g~ss~~~ss~sSss~~gSs~~~~dD~~~rp~lPAW-eiLEAvPfVlea~LTACaHGrL  889 (1328)
                       .|=...+|.+++.+    |+             +          +  ..+|.---| ||--.+|.|+-=+|.|=-+|-+
T Consensus       548 -~~d~~~vd~ll~~l----~~-------------~----------~--~~k~~~~kW~eiC~~iP~~i~eiL~AwE~g~l  597 (990)
T PF11277_consen  548 -LCDPAKVDSLLAQL----NS-------------S----------Q--EFKLSQVKWHEICLNIPGAIKEILNAWENGTL  597 (990)
T ss_pred             -ccCchhHHHHHHHh----cC-------------c----------c--ccCcccCcHHHHHHhhHHHHHHHHHHHHhCcc
Confidence             12334667777663    22             1          2  244433445 7889999999999999999999


Q ss_pred             Cchhh---hhhhhhhhhcch-hhHHHHHHhhh
Q 000727          890 SSRDL---ITGLRELVDFLP-ASIATIISYFS  917 (1328)
Q Consensus       890 S~RdL---~TGLrdL~DFLP-ASlatIvSYfS  917 (1328)
                      |.-|+   +.++||=+-+|| .--|-+.+|..
T Consensus       598 s~~~Vk~ild~ik~~~~~l~VCa~awLcay~~  629 (990)
T PF11277_consen  598 SIEEVKRILDNIKGKMCCLSVCAAAWLCAYMR  629 (990)
T ss_pred             cHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence            99885   788888777777 33445666654

It is essential for correct retinal development in fish. Subunit composition of the mediator contributes to the control of differentiation in the vertebrate CNS as there are divergent functions of the mediator subunits Crsp34/Med27, Trap100/Med24, and Crsp150/Med14 [].
>PRK02866 cyanate hydratase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1328
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 68.7 bits (167), Expect = 1e-11
 Identities = 96/616 (15%), Positives = 185/616 (30%), Gaps = 161/616 (26%)

Query: 21  FEERVIETAKRCQQRHDSP--VMWAVEMTRCLKSGSGSVVELGEVLVSYLCFQNNHPSLW 78
           FE+  ++    C+   D P  ++   E+   + S     V     L   L  +     + 
Sbjct: 25  FEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKD--AVSGTLRLFWTLLSKQEE-MVQ 80

Query: 79  KFLDYALTSN---LLSPIHILSLLTSRVIPHRRSQPQAFRLY--LELLSRYALNFHAVAS 133
           KF++  L  N   L+SPI       S     R    Q  RLY   ++ ++Y         
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSM--MTRMYIEQRDRLYNDNQVFAKY--------- 129

Query: 134 EDCNVKIIESI----EACLQLSRTYNVRVVE----FGH----ALVLSFFDLVVRLIDSLF 181
              NV  ++      +A L+L    NV +++     G       V   + +  ++   +F
Sbjct: 130 ---NVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 182 -----------------EDMGLQVGPLDQQSMEIDSIGNFCVGNNEHFEQIRR------- 217
                            + +  Q+ P        D   N  +  +    ++RR       
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTS--RSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 218 KNSLLVI------EVLNKLMDSSKAMVLLR------------LIHFNMPESFNGLLQR-- 257
           +N LLV+      +  N    S K ++  R              H ++      L     
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 258 ----LQFLE--ANKLESSKLKTVSQLLARLCDNVRNVPS-YDY-------KLNKHRFIGM 303
               L++L+     L    L T  + L+ + +++R+  + +D        KL     I  
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT--TIIES 361

Query: 304 LIDTKSLRP--MRSCNSESSWSSCWLSFDIFMENSMDGKQLPVTSAIIVLTRIITTLRVL 361
            ++   L P   R           +    +F  ++       + +           L ++
Sbjct: 362 SLN--VLEPAEYR---------KMFDRLSVFPPSA------HIPTI---------LLSLI 395

Query: 362 NRASWQ-------ETFLALWLSALRLVQRERDPPEGPLPHLEARLGILLSIVPLAIANVL 414
               W           +   L    LV+++       +P +   L + L     A+   +
Sbjct: 396 ----WFDVIKSDVMVVVNK-LHKYSLVEKQPKESTISIPSIYLELKVKLENEY-ALHRSI 449

Query: 415 AEQANIQLSTLQGSKTSGSIETG-----CGHGMEEKSLASKKEGLVSSLQALGNFSALLC 469
            +  NI   T                   GH ++      +                 + 
Sbjct: 450 VDHYNIP-KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 470 PPASVACEANNAAAKAASFISVSKNMKDGICSGSPS-ETLLNSGGNMRHLIVEACIA--- 525
                   A NA+    + +   K  K  IC   P  E L+N+  +    I E  I    
Sbjct: 509 H----DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564

Query: 526 RNLI------DTSAYY 535
            +L+      +  A +
Sbjct: 565 TDLLRIALMAEDEAIF 580
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00