Citrus Sinensis ID: 000756

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300
MEKNLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPELEEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGVLVCVWLN
ccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccEEEEcccEEEEEccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHHcccccccccccccEEEEEccHHHHHHHHHHHHHHHccccccEEEEEcccccccHHHHccccEEEcccccEEEEEccccccccccEEEEEEEEcEEccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccHHHHHHHccccEEEcccccHHHHHHHHHHHHccccEEEEEccccccccccccEEEEEEccEEEccccccEEEccHHHHHHHHHccccccccccEEEEEEEccccHHHHHHHHcccccEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEEcHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccHHHHHcccHHHHHHHHccccHHHHHHHHHHcccccEEEEEEEEccccEEEEEEEEEEcccccccccccccEEEEEEEEccccEEEEEEEEEEccccccccEEEEEEEEccccccccEEEEEEEccccccEEEEEcc
ccccccccHHHHHHHHHHHHHHcccEEEEccccccccccccccccHccccccccccccHcccccccHHHHHHHHHHHHHHHHcHHHHHHHHccccEccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccHccEEEEEcccccccccccccccccccccccHHHcccccHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHccccccccccccccEEEHHHHHHcccccccccccEEcccccEEEccccEEEEEcccccccccccccccEccccccHHHHHHHcccccccHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHccccccccEcccccEEEEEccHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHcccEEEEccccccEEEccccccHHHHEEEEEEEEcHHHccccccHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHcccccccEEEccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccHHHHHHHHcccEEEcccccHHHHHHHHHHHHcccEEEEEEEccEEcccccccEEEEEEccEEEccccccEEcccHHHHHHHHHcccccccccccEEEEEEcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEEccHHHHHHEEEEEHHHHHHHHHHccccccHHHHHHHHHcHHHHcccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHccccccHHHHHHHHHccccHHHHHcccHHHHHHHHcccHHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEEcccccccHccccccEEEEEEEcccccEEEEEEEEEEEEHcccccEEEEEEEEccccccccEEEEEEEcHHccccEEEEcc
meknlgggaeaHARFKQYEYRANsslvlttdsrprdtheptgepeslwgkidprsfgdrafrgrppeLEEKLKKSAKKkkerdpdadaaaasegtyqpktkETRAAYEAMLSVIQQqlggqplnivsGAADEILAVLKndavknpdkKKEIEKLlnpipnhvFDQLVSIGKLITDYQdagdaagndaanggedldddmgvavefeendddeeesdldmvqeedeeeeedvaepnasgamqmgggiddddesgdanegmslnvqDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLkdesasdggrdrrglvdrdadggwlgqrqlldLDTLAFqqgglfmanrkcdlpegsqrftnkgyeeihvpamkhkpldpneklikisempewaqpafkgmtqlNRVQSRVYKSALSSadnillcaptgagktNVAVLTILQQLALnrnddgsfnhsnykiVYVAPMKALVAEVVGNLSNRLQMYDVKVRelsgdqtltRQQIEETQIivttpekwdiitrksgdrTYTQLVKLLIIDEIhllhdnrgpvLESIVARTVRQIETTKEHIRLVGlsatlpnyeDVALFLRVNLEKglfyfdnsyrpvplsqqyigiqvkkplQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEndtlgrflkedsVSREILQSHtdmvksndlkdllpygfaihhagmtrgdRQLVEDLFGDGHVQVLVSTATlawgvnlpahtviikgtqiynpekgawtelsPLDIMQMLgragrpqydsygegiiITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLrnpalyglapevlkeditlGERRADLVHTAAtildrnnlvkydrksgyfqvtDLGRIASYYYIshgtistynehlkptmgdieLCRLFSLSEEFKYVTVRQDEKMELAKLldrvpipvkesleepsAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSvqtplrqfngipnEILMKLEKKDfaweryydlspqelgelirfpkmgrTLHKFVHQFPKLILAAHVQPITRTVLKVELtitpdflwddkvhgyvepfwvivedndgeyilHHEYFMLKKQYIeedhslnftvpiyeplppqyfiRVVSDKWLGVLVCVWLN
meknlgggaeaHARFKQYEYRANSslvlttdsrprdtheptgepeslwgkidprsfgdrafrgrppeleeKLKKsakkkkerdpdadaaaasegtyqpktKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLkndavknpDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFeendddeeesDLDMVQEEDeeeeedvaepnasgamqMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQknleksireearrlkdesasdggrdrrglvdrdadggwlGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEihvpamkhkpldpNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRelsgdqtltrqqieetqiivttpekwdiitrksgdrtYTQLVKLLIIDEihllhdnrgpvLESIVARTVRQiettkehirlvglsatlpnyEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVhsrketaktarairdtalendtlgrflkedsvSREILQshtdmvksndLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLvhtaatildrnnlvkydrksgyfQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELaklldrvpipvkesleepsAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWsvqtplrqfngipnEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGVLVCVWLN
MEKNLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPeleeklkksakkkkeRDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQdagdaagndaanggedldddMGVAVefeendddeeesdldMVQeedeeeeedVAEPNASGAMQMgggiddddesgdanegMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASdggrdrrglvdrdadggWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKlliideihllhdNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGVLVCVWLN
**********************************************************************************************************YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAV********IEKLLNPIPNHVFDQLVSIGKLITDYQD**********************************************************************************NVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLAR**********************AIL***********************************************ADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLP**********Y**I***********************EWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLK*******IL*****MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIM****************GIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE*L**PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGVLVCVWL*
************ARFKQYEYRANSSLV*******************LWGKIDPRSF*************************************GTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKND*********EIEKLLNPIPNHVFDQLVSIGKLITDYQ*******************DMGVAVE**********************************************************VQDIDAYWLQRKISQAFDQ*I**QQCQKLAEEV**********EVENKLLYHLQFDKFSLIKFLLRNRLKVVWCT****************************************************************************************DLDTLAF**********KCDLPEGSQRFTNKGYEEIHVPA**************ISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ*****EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDT*************************DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGVLVCVWLN
********AEAHARFKQYEYRANSSLVLTT***************SLWGKIDPRSFGDRAFRGRPPELE*********************************TRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFE****************************NASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREE***************RRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGVLVCVWLN
************ARFKQYEYRANSSLVLTTD*******************************GRPPELEEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQDA*************DLDDDMGVAVEFEE***************************************************MSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKE***************************************WLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGVLVCVWLN
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEKNLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPELEEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAxxxxxxxxxxxxxxxxxxxxxDEEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSASDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGVLVCVWLN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1300 2.2.26 [Sep-21-2011]
Q9VUV9 2142 Putative U5 small nuclear yes no 0.97 0.588 0.581 0.0
O75643 2136 U5 small nuclear ribonucl yes no 0.967 0.588 0.569 0.0
Q9U2G0 2145 Putative U5 small nuclear yes no 0.964 0.584 0.521 0.0
Q55CI8 2237 Activating signal cointeg yes no 0.971 0.564 0.493 0.0
Q9UT24 2176 Pre-mRNA-splicing factor yes no 0.964 0.576 0.492 0.0
P32639 2163 Pre-mRNA-splicing helicas yes no 0.957 0.575 0.408 0.0
F1NTD6 2211 Activating signal cointeg yes no 0.766 0.450 0.446 0.0
E1BNG3 2201 Activating signal cointeg no no 0.766 0.452 0.439 0.0
Q8N3C0 2202 Activating signal cointeg no no 0.680 0.401 0.476 0.0
F1LPQ2 2197 Activating signal cointeg no no 0.666 0.394 0.482 0.0
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4 Back     alignment and function desciption
 Score = 1490 bits (3857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 756/1299 (58%), Positives = 962/1299 (74%), Gaps = 38/1299 (2%)

Query: 9    AEAHARFKQYEYRANSSLVLTTD----SRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGR 64
            A+A AR  QYEY+ANS+LVL  D     RPR   E TGE  SL GK+D    GDR  R +
Sbjct: 2    ADAAARQLQYEYKANSNLVLQADVRLIERPR-RDEATGEVCSLVGKLDGTRMGDRYQRTK 60

Query: 65   PPELEE-KLKKSAKKKKERDPD--ADAAAASEG-------TYQPKTKETRAAYEAMLSVI 114
            P + EE K+K+  + + + D +    A   SEG        Y+PKT+ETR  YE +LS I
Sbjct: 61   PEKTEERKVKRQKRDEAQYDFERMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSFI 120

Query: 115  QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
            Q+ LG QP +I+ GAADEILAVLKND +K+ ++KK+I+ LL  + +  F  LV++GK IT
Sbjct: 121  QEALGDQPRDILCGAADEILAVLKNDRLKDRERKKDIDSLLGAVTDERFALLVNLGKKIT 180

Query: 175  DYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPN 234
            D+      A   A N  E +D+  G+ V+FEE+   EEESD DM  E  +++ +D  E  
Sbjct: 181  DFGSDAVNALTAAPNNEEQIDETYGINVQFEES---EEESDNDMYGEIRDDDAQDEGEEA 237

Query: 235  ASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEV 294
                      + +++ + +  +  SL+  DIDAYWLQR +S+ +    D    Q  A +V
Sbjct: 238  RIDHTLHAENLANEEAANNVKKERSLHPLDIDAYWLQRCLSKFYK---DAMVSQSKAADV 294

Query: 295  LKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEE 353
            LKIL +  DDR+ EN+L+  L +D F  IK L  NR  V++CT LA AQ   ER++I E+
Sbjct: 295  LKILKDAADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASAQTDSERQRIREK 354

Query: 354  MMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVDRDA 413
            M G    LA IL QL   ++  +E           EAR       S  G+         A
Sbjct: 355  MRG-NSALAKILRQLDTGKSEDQEEG---------EAR------GSKRGKGDAEDGGAAA 398

Query: 414  DGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPN 473
             G   G RQLL+L+ +AF QG  FMAN++C LP+GS R   KGYEE+HVPA+K  P D N
Sbjct: 399  AGQVAGVRQLLELEEMAFTQGSHFMANKRCQLPDGSYRKQRKGYEEVHVPALKPVPFDAN 458

Query: 474  EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
            E+L  + ++P++ QP F+G   LNR+QSR+YK+AL S +N+LLCAPTGAGKTNVA+LT++
Sbjct: 459  EELQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMM 518

Query: 534  QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
            +++  + N+DG+ N  ++KI+YVAPMK+LV E+VGN   RL  Y++ V EL+GD  LTR+
Sbjct: 519  REIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGRRLACYNLTVSELTGDHQLTRE 578

Query: 594  QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653
            QI  TQ+IV TPEKWDIITRK G+RT+  LV+L+IIDEIHLLHD RGPVLE++VART+R 
Sbjct: 579  QIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHDERGPVLEALVARTIRN 638

Query: 654  IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
            IETT+E +RLVGLSATLPNY+DVA FLRV  +KGLFYFDNSYRPV L QQYIG+  KK L
Sbjct: 639  IETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQYIGVTEKKAL 698

Query: 714  QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
            +RFQ+MN++ YEK +  AG++QVL+FVHSRKET KTARA+RD  LE DTLG FLKE S S
Sbjct: 699  KRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQDTLGSFLKEGSAS 758

Query: 774  REILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
             E+L++  + VK+ +LK+LLPYGFAIHHAGMTR DR LVEDLF D H+QVLVSTATLAWG
Sbjct: 759  MEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWG 818

Query: 834  VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893
            VNLPAHTVIIKGTQ+YNPEKG W ELS LD++QMLGRAGRPQYD+ GEGI+IT HSEL++
Sbjct: 819  VNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQF 878

Query: 894  YLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953
            YLSL+NQQLPIESQF+SKL D LNAEIVLGTVQ+ ++A NW+GYTYLYIRMLRNP LYG+
Sbjct: 879  YLSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGV 938

Query: 954  APEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013
            + + +K D  L + RADL+HTAA  L+R+ L+KYDRK+G+FQVTDLGRIAS+YY++H T+
Sbjct: 939  SHDAIKADPLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGRIASHYYLTHETM 998

Query: 1014 STYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAK 1073
             TYN+ LK T+ +IEL R+FSLS EF++++VR++EK+EL KL++RVPIP+KES+EE SAK
Sbjct: 999  LTYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPIPIKESIEEHSAK 1058

Query: 1074 INVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
            +NVLLQAYISQLKLEG +L SDMVFITQSA RL+RA+FEIVL RGWAQLA+K L L KM+
Sbjct: 1059 VNVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCKMI 1118

Query: 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFV 1193
             +RMW   TPLRQF  +P+EI  KLEKK F W R YDL P ELGELIR PK+G+T+HKFV
Sbjct: 1119 DRRMWQSMTPLRQFKKMPDEIAKKLEKKHFPWGRLYDLEPHELGELIRVPKLGKTIHKFV 1178

Query: 1194 HQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEY 1253
            HQFPKL L+ H+QPITR  L+VELTITPDF WD+KVHG  E FWV++ED D E ILHHE+
Sbjct: 1179 HQFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIEDVDSELILHHEF 1238

Query: 1254 FMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLG 1292
            F+LK++Y +++H L F VP++EPLPPQYF+R+VSD+W+G
Sbjct: 1239 FLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIG 1277
Putative RNA helicase involved in the second step of RNA splicing.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2 Back     alignment and function description
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1 Back     alignment and function description
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1 Back     alignment and function description
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brr2 PE=1 SV=1 Back     alignment and function description
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2 Back     alignment and function description
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus GN=ascc3 PE=3 SV=2 Back     alignment and function description
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus GN=ascc3 PE=3 SV=1 Back     alignment and function description
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens GN=ASCC3 PE=1 SV=3 Back     alignment and function description
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus norvegicus GN=Ascc3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1300
225433894 2177 PREDICTED: U5 small nuclear ribonucleopr 0.989 0.590 0.857 0.0
356525813 2183 PREDICTED: U5 small nuclear ribonucleopr 0.987 0.588 0.851 0.0
356556951 2183 PREDICTED: U5 small nuclear ribonucleopr 0.987 0.588 0.852 0.0
449459768 2175 PREDICTED: U5 small nuclear ribonucleopr 0.989 0.591 0.842 0.0
449517355 2175 PREDICTED: LOW QUALITY PROTEIN: U5 small 0.989 0.591 0.841 0.0
224136151 2157 predicted protein [Populus trichocarpa] 0.97 0.584 0.829 0.0
147802492 2144 hypothetical protein VITISV_042645 [Viti 0.963 0.584 0.820 0.0
297850522 2171 EMB1507 [Arabidopsis lyrata subsp. lyrat 0.986 0.590 0.802 0.0
357451431 2223 U5 small nuclear ribonucleoprotein 200 k 0.989 0.578 0.799 0.0
224121998 2175 predicted protein [Populus trichocarpa] 0.982 0.587 0.808 0.0
>gi|225433894|ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera] Back     alignment and taxonomy information
 Score = 2267 bits (5874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1122/1309 (85%), Positives = 1213/1309 (92%), Gaps = 23/1309 (1%)

Query: 4    NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
            +LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESL+GKIDP++FGDRA+RG
Sbjct: 3    HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKTFGDRAYRG 62

Query: 64   RPPEL-------------------EEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETR 104
            RPPEL                   E  L + +K+++ ++ ++  ++  EG YQPKTKETR
Sbjct: 63   RPPELDEKLKKSKRKKEREPQNASEPVLSRQSKRRRIQE-ESVLSSTEEGVYQPKTKETR 121

Query: 105  AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFD 164
            AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKN+ VKNPDKKKEIE+LLNPIPNH+FD
Sbjct: 122  AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNETVKNPDKKKEIERLLNPIPNHIFD 181

Query: 165  QLVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDE 224
            QLVSIG+LITD+QD GDAAG  AANG + LDDD+GVAVEFEEN+D+EEESDLDMVQE++E
Sbjct: 182  QLVSIGRLITDFQDGGDAAGPTAANGDDALDDDVGVAVEFEENEDEEEESDLDMVQEDEE 241

Query: 225  EEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDP 284
            E+++ + + N SGAMQMGGGIDDDD   +ANEGM+LNVQDIDAYWLQRKISQA++QQIDP
Sbjct: 242  EDDDVMEQ-NGSGAMQMGGGIDDDDMQ-EANEGMTLNVQDIDAYWLQRKISQAYEQQIDP 299

Query: 285  QQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQ 344
            QQCQKLAEEVLKILAEGDDREVE KLL HLQFDKFSLIKFLLRNRLK+VWCTRLARA+DQ
Sbjct: 300  QQCQKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKFLLRNRLKIVWCTRLARAEDQ 359

Query: 345  EERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRD 404
            EERKKIEEEM G G DLAAIL+QLHATRATAKERQK LEKSIREEARRLKDES  DG RD
Sbjct: 360  EERKKIEEEMTGSGSDLAAILEQLHATRATAKERQKILEKSIREEARRLKDESGGDGDRD 419

Query: 405  RRGLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVP 463
            RRG VDRDA+ GWL GQRQLLDLD +AF QGG  MAN+KC+LP GS R  +KGYEE+HVP
Sbjct: 420  RRGPVDRDAESGWLKGQRQLLDLDGIAFHQGGFLMANKKCELPTGSYRHHSKGYEEVHVP 479

Query: 464  AMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAG 523
            A+K   L P E+L+KIS MP+WAQPAFKGMTQLNRVQS+VY++AL +A+N+LLCAPTGAG
Sbjct: 480  ALKAAALGPGEELVKISAMPDWAQPAFKGMTQLNRVQSKVYETALFTAENVLLCAPTGAG 539

Query: 524  KTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE 583
            KTNVA+LTILQQ+ALNRN DGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ YDVKV+E
Sbjct: 540  KTNVAMLTILQQIALNRNADGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQHYDVKVKE 599

Query: 584  LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643
            LSGDQ+LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLI+DEIHLLHDNRGPVL
Sbjct: 600  LSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLLHDNRGPVL 659

Query: 644  ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ 703
            ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV+L+KGLF+FDNSYRP PL+QQ
Sbjct: 660  ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDLKKGLFHFDNSYRPCPLAQQ 719

Query: 704  YIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763
            YIGI VKKPLQRFQLMND+CYEKV+AVAGKHQVLIFVHSRKETAKTARAIRDTAL NDTL
Sbjct: 720  YIGITVKKPLQRFQLMNDVCYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDTALANDTL 779

Query: 764  GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
            GRFLKEDS SREIL SHT++VK+NDLKDLLPYGFAIHHAGM R DRQLVE+LF DGHVQV
Sbjct: 780  GRFLKEDSASREILHSHTELVKNNDLKDLLPYGFAIHHAGMARADRQLVEELFADGHVQV 839

Query: 824  LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
            LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQYDSYGEGI
Sbjct: 840  LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGI 899

Query: 884  IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
            IITGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EAC+WIGYTYLY+R
Sbjct: 900  IITGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACSWIGYTYLYVR 959

Query: 944  MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
            MLRNP LYGL+ + L  DITL ERRADL+H+AA ILDRNNLVKYDRKSGYFQVTDLGRIA
Sbjct: 960  MLRNPTLYGLSHDALTRDITLEERRADLIHSAAIILDRNNLVKYDRKSGYFQVTDLGRIA 1019

Query: 1004 SYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV 1063
            SYYYI+HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP+
Sbjct: 1020 SYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPI 1079

Query: 1064 KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123
            KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWAQL 
Sbjct: 1080 KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLVRALFEIVLKRGWAQLT 1139

Query: 1124 EKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFP 1183
            EKALNL KMV KRMWSVQTPLRQFN IPNEILMKLEKKD AWERYYDLS QELGELIR+P
Sbjct: 1140 EKALNLCKMVNKRMWSVQTPLRQFNAIPNEILMKLEKKDLAWERYYDLSSQELGELIRYP 1199

Query: 1184 KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDN 1243
            KMGRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF W+DKVHG+VEPFWVIVEDN
Sbjct: 1200 KMGRTLHKFIHQFPKLDLAAHVQPITRTVLRVELTITPDFQWEDKVHGFVEPFWVIVEDN 1259

Query: 1244 DGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLG 1292
            DGEYILHHEYFM+KKQYI+E H+LNFTVPIYEPLPPQYFIRVVSD+WLG
Sbjct: 1260 DGEYILHHEYFMMKKQYIDEVHTLNFTVPIYEPLPPQYFIRVVSDRWLG 1308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356525813|ref|XP_003531516.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] Back     alignment and taxonomy information
>gi|356556951|ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] Back     alignment and taxonomy information
>gi|449459768|ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449517355|ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224136151|ref|XP_002322252.1| predicted protein [Populus trichocarpa] gi|222869248|gb|EEF06379.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147802492|emb|CAN75158.1| hypothetical protein VITISV_042645 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297850522|ref|XP_002893142.1| EMB1507 [Arabidopsis lyrata subsp. lyrata] gi|297338984|gb|EFH69401.1| EMB1507 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357451431|ref|XP_003595992.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago truncatula] gi|355485040|gb|AES66243.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224121998|ref|XP_002318725.1| predicted protein [Populus trichocarpa] gi|222859398|gb|EEE96945.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1300
TAIR|locus:2037375 2171 emb1507 "embryo defective 1507 0.986 0.590 0.747 0.0
TAIR|locus:2059969 2172 AT2G42270 [Arabidopsis thalian 0.986 0.590 0.697 0.0
UNIPROTKB|O75643 2136 SNRNP200 "U5 small nuclear rib 0.783 0.476 0.609 0.0
UNIPROTKB|E1BH78 2136 LOC100850262 "Uncharacterized 0.783 0.476 0.608 0.0
ZFIN|ZDB-GENE-081105-64 2134 si:ch211-251j10.5 "si:ch211-25 0.781 0.476 0.606 0.0
UNIPROTKB|F1LNJ2 2139 Ascc3l1 "Protein Ascc3l1" [Rat 0.783 0.475 0.608 0.0
FB|FBgn0263599 2142 l(3)72Ab "lethal (3) 72Ab" [Dr 0.764 0.464 0.617 0.0
WB|WBGene00012896 2145 snrp-200 [Caenorhabditis elega 0.765 0.463 0.562 0.0
UNIPROTKB|Q9U2G0 2145 Y46G5A.4 "Putative U5 small nu 0.765 0.463 0.562 0.0
POMBASE|SPAC9.03c 2176 brr2 "U5 snRNP complex subunit 0.783 0.467 0.542 0.0
TAIR|locus:2037375 emb1507 "embryo defective 1507" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4998 (1764.4 bits), Expect = 0., P = 0.
 Identities = 976/1305 (74%), Positives = 1095/1305 (83%)

Query:     4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
             NLGGGAEAHARFKQYEYRANSSLVLTTD+RPRDTHEPTGEPE+LWGKIDPRSFGDR  +G
Sbjct:     3 NLGGGAEAHARFKQYEYRANSSLVLTTDNRPRDTHEPTGEPETLWGKIDPRSFGDRVAKG 62

Query:    64 RPPXXXXXXXXXXXXXXXRDPDADAAAAS---------------EGTYQPKTKETRAAYE 108
             RP                   D      S               +  YQPKTKETRAAYE
Sbjct:    63 RPQELEDKLKKSKKKERDVVDDMVNIRQSKRRRLREESVLTDTDDAVYQPKTKETRAAYE 122

Query:   109 AMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVS 168
             AML +IQ+QLGGQP +IVSGAADEILAVLKNDA +NP+KK EIEKLLN I NH FDQLVS
Sbjct:   123 AMLGLIQKQLGGQPPSIVSGAADEILAVLKNDAFRNPEKKMEIEKLLNKIENHEFDQLVS 182

Query:   169 IGKLITDYQXXXXXXXXXXXXXXXXXXXXMGVAVXXXXXXXXXXXXXXXMVQXXXXXXXX 228
             IGKLITD+Q                    +GVAV               MV+        
Sbjct:   183 IGKLITDFQEGGDSGGGRANDDEGLDDD-LGVAVEFEENEEDDEESDPDMVEEDDDEEDD 241

Query:   229 XVAEPNASGAMQMXXXXXXXXXXXXXXXXMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQ 288
                EP  +G MQ+                 +LNVQDIDAYWLQRKISQA++QQIDPQQCQ
Sbjct:   242 ---EPTRTGGMQVDAGINDEDAGDANEGT-NLNVQDIDAYWLQRKISQAYEQQIDPQQCQ 297

Query:   289 KLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERK 348
              LAEE+LKILAEGDDR VE+KLL HLQ++KFSL+KFLLRNRLKVVWCTRLARA+DQEER 
Sbjct:   298 VLAEELLKILAEGDDRVVEDKLLMHLQYEKFSLVKFLLRNRLKVVWCTRLARAEDQEERN 357

Query:   349 KIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASXXXXXXXXX 408
             +IEEEM GLGP+L AI++QLHATRATAKER++NL+KSI EEARRLKDE+           
Sbjct:   358 RIEEEMRGLGPELTAIVEQLHATRATAKEREENLQKSINEEARRLKDETGGDGGRGRRDV 417

Query:   409 XXXXXXXXWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKH 467
                     W+ GQRQ+LDL++LAF QGGL MAN+KCDLP GS R   KGY+E+HVP +  
Sbjct:   418 ADRDSESGWVKGQRQMLDLESLAFDQGGLLMANKKCDLPPGSYRSHGKGYDEVHVPWVSK 477

Query:   468 KPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNV 527
             K +D NEKL+KI+EMP+WAQPAFKGM QLNRVQS+VY +AL  A+NILLCAPTGAGKTNV
Sbjct:   478 K-VDRNEKLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNV 536

Query:   528 AVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587
             A+LTILQQL +NRN DG++NH +YKIVYVAPMKALVAEVVGNLSNRL+ Y V VRELSGD
Sbjct:   537 AMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVIVRELSGD 596

Query:   588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIV 647
             Q+LT ++IEETQIIVTTPEKWDIITRKSGDRTYTQLV+            NRGPVLESIV
Sbjct:   597 QSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIV 656

Query:   648 ARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707
             ART+RQIETTKE+IRLVGLSATLPNYEDVALFLRV+L+KGLF FD SYRPVPL QQYIGI
Sbjct:   657 ARTLRQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIGI 716

Query:   708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
              VKKPLQRFQLMNDLCY+KV+A AGKHQVLIFVHSRKET+KTARAIRDTA+ NDTL RFL
Sbjct:   717 SVKKPLQRFQLMNDLCYQKVLAGAGKHQVLIFVHSRKETSKTARAIRDTAMANDTLSRFL 776

Query:   768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST 827
             KEDSV+R++L SH D+VK++DLKD+LPYGFAIHHAG++RGDR++VE LF  GHVQVLVST
Sbjct:   777 KEDSVTRDVLHSHEDIVKNSDLKDILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVST 836

Query:   828 ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887
             ATLAWGVNLPAHTVIIKGTQ+YNPEKGAW ELSPLD+MQMLGRAGRPQYD +GEGIIITG
Sbjct:   837 ATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITG 896

Query:   888 HSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947
             +SEL+YYLSLMN+QLPIESQF+SKLADQLNAEIVLGTVQNA+EAC+W+GYTYLYIRM+RN
Sbjct:   897 YSELQYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRN 956

Query:   948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYY 1007
             P LYGLAP+ L +D+ L ERRADL+H+AATILD+NNLVKYDRKSGYFQVTDLGRIASYYY
Sbjct:   957 PTLYGLAPDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYY 1016

Query:  1008 ISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESL 1067
             I+HGTI+TYNEHLKPTMGDI+L RLFSLS+EFKYVTVRQDEKMELAKLLDRVPIP+KE+L
Sbjct:  1017 ITHGTIATYNEHLKPTMGDIDLYRLFSLSDEFKYVTVRQDEKMELAKLLDRVPIPIKETL 1076

Query:  1068 EEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKAL 1127
             EEPSAKINVLLQAYISQLKLEGLSLTSDMV+ITQSAGRL+RAL+EIVLKRGWAQLAEKAL
Sbjct:  1077 EEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKAL 1136

Query:  1128 NLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGR 1187
             NLSKMV KRMWSVQTPLRQF+G+ N+ILM+LEKKD  WERYYDLS QELGELIR PKMG+
Sbjct:  1137 NLSKMVGKRMWSVQTPLRQFHGLSNDILMQLEKKDLVWERYYDLSAQELGELIRSPKMGK 1196

Query:  1188 TLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEY 1247
              LHKF+HQFPK+ L+AHVQPITRTVL VELT+TPDFLWD+K+H YVEPFW+IVEDNDGE 
Sbjct:  1197 PLHKFIHQFPKVTLSAHVQPITRTVLNVELTVTPDFLWDEKIHKYVEPFWIIVEDNDGEK 1256

Query:  1248 ILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLG 1292
             ILHHEYF+LKKQYI+EDH+L+FTVPI+EPLPPQYF+RVVSDKWLG
Sbjct:  1257 ILHHEYFLLKKQYIDEDHTLHFTVPIFEPLPPQYFVRVVSDKWLG 1301
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
GO:0005730 "nucleolus" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006259 "DNA metabolic process" evidence=RCA
GO:0007126 "meiosis" evidence=RCA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0033044 "regulation of chromosome organization" evidence=RCA
TAIR|locus:2059969 AT2G42270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O75643 SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa helicase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BH78 LOC100850262 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081105-64 si:ch211-251j10.5 "si:ch211-251j10.5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1LNJ2 Ascc3l1 "Protein Ascc3l1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0263599 l(3)72Ab "lethal (3) 72Ab" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00012896 snrp-200 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q9U2G0 Y46G5A.4 "Putative U5 small nuclear ribonucleoprotein 200 kDa helicase" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
POMBASE|SPAC9.03c brr2 "U5 snRNP complex subunit Brr2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.130.824
3rd Layer3.6.40.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XV000704
hypothetical protein (2157 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00440042
hypothetical protein (2357 aa)
   •••• 0.767
eugene3.00170116
hypothetical protein (1268 aa)
   •••• 0.569
estExt_Genewise1_v1.C_LG_XIII3357
hypothetical protein (820 aa)
    ••• 0.506

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1300
COG1204766 COG1204, COG1204, Superfamily II helicase [General 0.0
pfam02889309 pfam02889, Sec63, Sec63 Brl domain 1e-128
smart00611312 smart00611, SEC63, Domain of unknown function in S 1e-119
smart00973314 smart00973, Sec63, Sec63 Brl domain 1e-107
PRK01172674 PRK01172, PRK01172, ski2-like helicase; Provisiona 5e-45
PRK00254720 PRK00254, PRK00254, ski2-like helicase; Provisiona 5e-44
PRK02362737 PRK02362, PRK02362, ski2-like helicase; Provisiona 1e-43
pfam00270169 pfam00270, DEAD, DEAD/DEAH box helicase 2e-35
COG1202830 COG1202, COG1202, Superfamily II helicase, archaea 2e-31
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 1e-24
COG1201814 COG1201, Lhr, Lhr-like helicases [General function 1e-21
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 1e-21
TIGR04121803 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA 2e-15
smart0049082 smart00490, HELICc, helicase superfamily c-termina 1e-14
COG1205851 COG1205, COG1205, Distinct helicase family with a 3e-14
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 5e-12
COG45811041 COG4581, COG4581, Superfamily II RNA helicase [DNA 7e-12
PRK13767876 PRK13767, PRK13767, ATP-dependent helicase; Provis 4e-11
COG4581 1041 COG4581, COG4581, Superfamily II RNA helicase [DNA 2e-10
PRK09751 1490 PRK09751, PRK09751, putative ATP-dependent helicas 2e-10
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 2e-09
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 3e-07
COG1203733 COG1203, COG1203, CRISPR-associated helicase Cas3 4e-07
COG1111542 COG1111, MPH1, ERCC4-like helicases [DNA replicati 1e-06
PRK13766773 PRK13766, PRK13766, Hef nuclease; Provisional 1e-06
cd09639353 cd09639, Cas3_I, CRISPR/Cas system-associated prot 7e-06
PRK05901509 PRK05901, PRK05901, RNA polymerase sigma factor; P 1e-05
TIGR01587358 TIGR01587, cas3_core, CRISPR-associated helicase C 2e-05
cd00268203 cd00268, DEADc, DEAD-box helicases 5e-05
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 7e-04
pfam05285317 pfam05285, SDA1, SDA1 0.001
COG4547620 COG4547, CobT, Cobalamin biosynthesis protein CobT 0.001
TIGR00643630 TIGR00643, recG, ATP-dependent DNA helicase RecG 0.001
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 0.003
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] Back     alignment and domain information 
 Score =  615 bits (1589), Expect = 0.0
 Identities = 259/808 (32%), Positives = 379/808 (46%), Gaps = 56/808 (6%)

Query: 459  EIHVPA--MKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILL 516
            EI +    +    +  ++++++I +     +         N  Q  V K  LS   N+L+
Sbjct: 1    EIFMKEEKLATSKVKLDDRVLEILKGDGIDE-------LFNPQQEAVEKGLLSDE-NVLI 52

Query: 517  CAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576
             APTG+GKT +A+L IL           +      K+VY+ P+KAL  E     S RL+ 
Sbjct: 53   SAPTGSGKTLIALLAILS----------TLLEGGGKVVYIVPLKALAEEKYEEFS-RLEE 101

Query: 577  YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636
              ++V   +GD  L  +++    +IVTTPEK D +TRK     + + V L++IDEIHLL 
Sbjct: 102  LGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLG 159

Query: 637  D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY 695
            D  RGPVLESIVAR  R  E     IR+VGLSATLPN E+VA +L   L +  +      
Sbjct: 160  DRTRGPVLESIVARMRRLNEL----IRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLR 215

Query: 696  RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIR 754
            R VP    ++G   KK      L+++L  E V+ ++A   QVL+FVHSRKE  KTA+ +R
Sbjct: 216  RGVPYVGAFLGADGKKKTWP-LLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLR 274

Query: 755  DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814
                   +    +  D  +  IL   T   +  +L +L+  G A HHAG+ R DRQLVED
Sbjct: 275  IKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVED 334

Query: 815  LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874
             F  G ++VLVST TLA GVNLPA TVIIK T+ Y+P+ G   ++  LD++QM GRAGRP
Sbjct: 335  AFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGG-IVDIPVLDVLQMAGRAGRP 393

Query: 875  QYDSYGEGIII-TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACN 933
             YD YGE II+ T H EL Y   L  Q  P      SKL D+LN    L  V +  +A +
Sbjct: 394  GYDDYGEAIILATSHDELEYLAELYIQSEPEP--IESKLGDELNLRTFLLGVISVGDAVS 451

Query: 934  WIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGY 993
            W+  T  Y R   NP  YG      +   +L                  N +  D     
Sbjct: 452  WLELTDFYERTFYNPQTYGEGMLREEILASLRYLEE-------------NGLILDADWEA 498

Query: 994  FQVTDLGRIASYYYISHGTISTYNE---HLKPTMGDIELCRLFSLSEEFKYVTVRQDEKM 1050
               T+LG++ S  YI   +   + +    L     +I L  L SL+ +   + +R+ E  
Sbjct: 499  LHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERESS 558

Query: 1051 ELAK--LLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLR 1108
            EL    L ++    + E L+E + + N+LLQA  +  +L      +D   I  + G    
Sbjct: 559  ELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPG 618

Query: 1109 ALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERY 1168
             L  I     W  L+   L L K   +    +   L         + +++E      E  
Sbjct: 619  DLLRIAETAEW--LSADLLALGKAAERLAKILGLGLHVLR-KLEILSLRIEYG-VRSEEL 674

Query: 1169 YDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDK 1228
             +L        +R  K+    +K +     +   A + P+T    ++   I      D  
Sbjct: 675  LELVEIRGVGRVRARKLYNAGYKSLEDLRLIADPAELLPLTGIGERLVEAILESLGRDVL 734

Query: 1229 VHGYVEPFWVIVEDNDGEYILHHEYFML 1256
            + G    F + V + D  Y+LH E  +L
Sbjct: 735  LSGRAYFFSIEVRELDLLYVLHEEALIL 762

Length = 766
>gnl|CDD|217270 pfam02889, Sec63, Sec63 Brl domain Back     alignment and domain information
>gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins Back     alignment and domain information
>gnl|CDD|214946 smart00973, Sec63, Sec63 Brl domain Back     alignment and domain information
>gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase Back     alignment and domain information
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional Back     alignment and domain information
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional Back     alignment and domain information
>gnl|CDD|187770 cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3 Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|233483 TIGR01587, cas3_core, CRISPR-associated helicase Cas3 Back     alignment and domain information
>gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|218538 pfam05285, SDA1, SDA1 Back     alignment and domain information
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1300
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 100.0
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 100.0
PRK02362737 ski2-like helicase; Provisional 100.0
PRK00254720 ski2-like helicase; Provisional 100.0
COG1204766 Superfamily II helicase [General function predicti 100.0
PRK01172674 ski2-like helicase; Provisional 100.0
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 100.0
smart00611312 SEC63 Domain of unknown function in Sec63p, Brr2p 100.0
PF02889314 Sec63: Sec63 Brl domain; InterPro: IPR004179 This 100.0
COG1202830 Superfamily II helicase, archaea-specific [General 100.0
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK13767876 ATP-dependent helicase; Provisional 100.0
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 100.0
COG1201814 Lhr Lhr-like helicases [General function predictio 100.0
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 100.0
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 100.0
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 100.0
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
PTZ00110545 helicase; Provisional 100.0
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 100.0
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG09481041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 100.0
PTZ00424401 helicase 45; Provisional 100.0
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 100.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 100.0
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 100.0
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 100.0
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 100.0
COG45811041 Superfamily II RNA helicase [DNA replication, reco 100.0
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 100.0
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 100.0
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 100.0
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0343758 consensus RNA Helicase [RNA processing and modific 100.0
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 100.0
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 100.0
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 100.0
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 100.0
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 100.0
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0347731 consensus RNA helicase [RNA processing and modific 100.0
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 100.0
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 100.0
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 100.0
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 100.0
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 100.0
TIGR00643630 recG ATP-dependent DNA helicase RecG. 100.0
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 100.0
KOG0346569 consensus RNA helicase [RNA processing and modific 100.0
PRK106891147 transcription-repair coupling factor; Provisional 100.0
PHA02653675 RNA helicase NPH-II; Provisional 100.0
KOG0334997 consensus RNA helicase [RNA processing and modific 100.0
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 100.0
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 100.0
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 100.0
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 100.0
KOG4284 980 consensus DEAD box protein [Transcription] 100.0
COG1205851 Distinct helicase family with a unique C-terminal 100.0
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 100.0
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 100.0
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 99.98
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.97
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 99.97
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.97
KOG0327397 consensus Translation initiation factor 4F, helica 99.97
PHA02558501 uvsW UvsW helicase; Provisional 99.97
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.97
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 99.97
KOG0354746 consensus DEAD-box like helicase [General function 99.96
KOG09261172 consensus DEAH-box RNA helicase [RNA processing an 99.96
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 99.96
PRK05580679 primosome assembly protein PriA; Validated 99.96
PRK13766773 Hef nuclease; Provisional 99.95
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.95
PRK14701 1638 reverse gyrase; Provisional 99.95
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 99.95
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.95
PRK09401 1176 reverse gyrase; Reviewed 99.95
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 99.95
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.95
KOG4434520 consensus Molecular chaperone SEC63, endoplasmic r 99.95
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.94
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.94
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.94
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.94
KOG0353695 consensus ATP-dependent DNA helicase [General func 99.94
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.93
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.93
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.93
PRK09694878 helicase Cas3; Provisional 99.93
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.91
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.91
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.89
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.88
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.86
PRK04914956 ATP-dependent helicase HepA; Validated 99.86
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.86
COG1198730 PriA Primosomal protein N' (replication factor Y) 99.85
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.85
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.85
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.84
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.81
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.81
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.79
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 99.79
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.76
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.7
PLN031421033 Probable chromatin-remodeling complex ATPase chain 99.67
KOG41501034 consensus Predicted ATP-dependent RNA helicase [RN 99.65
COG4096875 HsdR Type I site-specific restriction-modification 99.65
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.63
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.61
smart00487201 DEXDc DEAD-like helicases superfamily. 99.61
PRK05298652 excinuclease ABC subunit B; Provisional 99.6
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.6
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 99.59
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.58
KOG1123776 consensus RNA polymerase II transcription initiati 99.58
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.55
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.54
PRK14873665 primosome assembly protein PriA; Provisional 99.53
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 99.51
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 99.5
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.45
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 99.43
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 99.41
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.4
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.39
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.36
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 99.36
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 99.36
COG5407610 SEC63 Preprotein translocase subunit Sec63 [Intrac 99.34
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 99.3
COG4889 1518 Predicted helicase [General function prediction on 99.28
CHL00122870 secA preprotein translocase subunit SecA; Validate 99.27
PRK12903925 secA preprotein translocase subunit SecA; Reviewed 99.27
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 99.24
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 99.22
PRK12902939 secA preprotein translocase subunit SecA; Reviewed 99.21
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 99.19
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 99.15
smart0049082 HELICc helicase superfamily c-terminal domain. 99.07
PF02399824 Herpes_ori_bp: Origin of replication binding prote 99.01
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 98.87
KOG0387923 consensus Transcription-coupled repair protein CSB 98.86
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 98.84
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 98.8
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 98.73
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 98.69
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 98.64
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 98.6
smart00489289 DEXDc3 DEAD-like helicases superfamily. 98.55
smart00488289 DEXDc2 DEAD-like helicases superfamily. 98.55
KOG2340698 consensus Uncharacterized conserved protein [Funct 98.49
KOG4439901 consensus RNA polymerase II transcription terminat 98.35
COG0610962 Type I site-specific restriction-modification syst 98.35
KOG1002791 consensus Nucleotide excision repair protein RAD16 98.23
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 98.05
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 98.04
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 98.03
PRK15483986 type III restriction-modification system StyLTI en 97.91
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 97.88
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 97.82
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 97.74
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 97.74
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 97.73
TIGR00376637 DNA helicase, putative. The gene product may repre 97.7
KOG1803649 consensus DNA helicase [Replication, recombination 97.57
PRK10536262 hypothetical protein; Provisional 97.49
PF1324576 AAA_19: Part of AAA domain 97.48
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 97.28
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 97.15
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 96.97
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 96.91
TIGR00596814 rad1 DNA repair protein (rad1). This family is bas 96.89
PRK10875615 recD exonuclease V subunit alpha; Provisional 96.87
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 96.86
PRK13889988 conjugal transfer relaxase TraA; Provisional 96.84
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 96.75
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 96.73
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 96.7
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 96.68
COG3587985 Restriction endonuclease [Defense mechanisms] 96.67
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 96.62
COG3421812 Uncharacterized protein conserved in bacteria [Fun 96.47
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 96.44
PRK138261102 Dtr system oriT relaxase; Provisional 96.33
PRK12377248 putative replication protein; Provisional 96.2
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 96.16
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 96.14
PTZ001121164 origin recognition complex 1 protein; Provisional 96.13
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 96.09
KOG1132945 consensus Helicase of the DEAD superfamily [Replic 96.08
PHA03333752 putative ATPase subunit of terminase; Provisional 96.04
PRK06526254 transposase; Provisional 95.9
PRK11054684 helD DNA helicase IV; Provisional 95.89
PRK10919672 ATP-dependent DNA helicase Rep; Provisional 95.88
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 95.83
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 95.8
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 95.77
PRK07952244 DNA replication protein DnaC; Validated 95.77
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 95.74
COG1444758 Predicted P-loop ATPase fused to an acetyltransfer 95.7
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 95.67
smart00382148 AAA ATPases associated with a variety of cellular 95.62
KOG18051100 consensus DNA replication helicase [Replication, r 95.6
PRK08903227 DnaA regulatory inactivator Hda; Validated 95.48
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 95.43
PRK14974336 cell division protein FtsY; Provisional 95.41
PF05127177 Helicase_RecD: Helicase; InterPro: IPR007807 This 95.39
smart00492141 HELICc3 helicase superfamily c-terminal domain. 95.27
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 95.26
PRK04296190 thymidine kinase; Provisional 95.24
TIGR01547396 phage_term_2 phage terminase, large subunit, PBSX 95.17
PRK08727233 hypothetical protein; Validated 95.16
CHL00181287 cbbX CbbX; Provisional 95.15
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 95.15
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 95.13
TIGR02928365 orc1/cdc6 family replication initiation protein. M 95.1
PRK11773721 uvrD DNA-dependent helicase II; Provisional 95.1
cd01124187 KaiC KaiC is a circadian clock protein primarily f 95.04
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 95.03
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 94.98
TIGR01074664 rep ATP-dependent DNA helicase Rep. Designed to id 94.98
PRK08116268 hypothetical protein; Validated 94.95
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 94.88
COG4962355 CpaF Flp pilus assembly protein, ATPase CpaF [Intr 94.86
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 94.86
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 94.77
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 94.76
TIGR01075715 uvrD DNA helicase II. Designed to identify uvrD me 94.75
PRK13833323 conjugal transfer protein TrbB; Provisional 94.71
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 94.65
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 94.61
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 94.55
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 94.54
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 94.5
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 94.48
PF00004132 AAA: ATPase family associated with various cellula 94.35
PHA03368738 DNA packaging terminase subunit 1; Provisional 94.35
PHA02533534 17 large terminase protein; Provisional 94.31
PRK05973237 replicative DNA helicase; Provisional 94.28
PRK00411394 cdc6 cell division control protein 6; Reviewed 94.26
PRK13894319 conjugal transfer ATPase TrbB; Provisional 94.21
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 94.21
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 94.19
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 94.17
PRK14087450 dnaA chromosomal replication initiation protein; P 94.13
PRK06893229 DNA replication initiation factor; Validated 94.11
PRK08769319 DNA polymerase III subunit delta'; Validated 94.05
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 94.01
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 93.97
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 93.93
PRK05707328 DNA polymerase III subunit delta'; Validated 93.91
TIGR01073726 pcrA ATP-dependent DNA helicase PcrA. Designed to 93.9
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 93.89
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 93.84
PRK12402337 replication factor C small subunit 2; Reviewed 93.73
PRK08181269 transposase; Validated 93.58
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 93.5
PRK00149450 dnaA chromosomal replication initiation protein; R 93.5
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 93.44
PF03796259 DnaB_C: DnaB-like helicase C terminal domain; Inte 93.44
PRK05642234 DNA replication initiation factor; Validated 93.33
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 93.31
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 93.31
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 93.29
COG2256436 MGS1 ATPase related to the helicase subunit of the 93.29
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 93.27
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 93.27
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 93.24
PRK147121623 conjugal transfer nickase/helicase TraI; Provision 93.17
PRK11823446 DNA repair protein RadA; Provisional 93.14
PRK08084235 DNA replication initiation factor; Provisional 93.09
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 93.06
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 93.03
TIGR02785 1232 addA_Gpos recombination helicase AddA, Firmicutes 93.02
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 92.94
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 92.88
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 92.81
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 92.79
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 92.78
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 92.74
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 92.71
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 92.63
PLN03025319 replication factor C subunit; Provisional 92.6
PRK10416318 signal recognition particle-docking protein FtsY; 92.55
TIGR00362405 DnaA chromosomal replication initiator protein Dna 92.55
PRK06904472 replicative DNA helicase; Validated 92.48
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 92.46
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 92.45
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 92.43
PRK137091747 conjugal transfer nickase/helicase TraI; Provision 92.33
TIGR00064272 ftsY signal recognition particle-docking protein F 92.25
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 92.25
PRK06921266 hypothetical protein; Provisional 92.18
PRK13851344 type IV secretion system protein VirB11; Provision 92.15
PF03354477 Terminase_1: Phage Terminase ; InterPro: IPR005021 92.12
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 92.1
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 92.09
COG3973747 Superfamily I DNA and RNA helicases [General funct 92.07
PRK06964342 DNA polymerase III subunit delta'; Validated 91.97
COG0470325 HolB ATPase involved in DNA replication [DNA repli 91.96
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 91.82
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 91.79
PRK12422445 chromosomal replication initiation protein; Provis 91.77
PRK04328249 hypothetical protein; Provisional 91.77
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 91.74
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 91.71
PRK14723767 flhF flagellar biosynthesis regulator FlhF; Provis 91.52
smart00491142 HELICc2 helicase superfamily c-terminal domain. 91.43
PRK14088440 dnaA chromosomal replication initiation protein; P 91.32
TIGR02012321 tigrfam_recA protein RecA. This model describes or 91.31
PRK05748448 replicative DNA helicase; Provisional 91.24
PRK00771437 signal recognition particle protein Srp54; Provisi 91.2
PRK08760476 replicative DNA helicase; Provisional 91.19
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 90.99
cd03115173 SRP The signal recognition particle (SRP) mediates 90.97
PRK06871325 DNA polymerase III subunit delta'; Validated 90.96
TIGR03600421 phage_DnaB phage replicative helicase, DnaB family 90.91
PRK09112351 DNA polymerase III subunit delta'; Validated 90.89
PRK09354349 recA recombinase A; Provisional 90.88
cd00983325 recA RecA is a bacterial enzyme which has roles in 90.85
TIGR00665434 DnaB replicative DNA helicase. This model describe 90.83
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 90.77
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 90.68
PRK04195482 replication factor C large subunit; Provisional 90.66
COG0630312 VirB11 Type IV secretory pathway, VirB11 component 90.57
PRK13342413 recombination factor protein RarA; Reviewed 90.57
KOG0298 1394 consensus DEAD box-containing helicase-like transc 90.56
PRK05636505 replicative DNA helicase; Provisional 90.45
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 90.39
PRK13900332 type IV secretion system ATPase VirB11; Provisiona 90.38
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 90.36
PF00437270 T2SE: Type II/IV secretion system protein; InterPr 90.33
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 90.17
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 90.16
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 90.09
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 90.04
PRK07940394 DNA polymerase III subunit delta'; Validated 89.94
PRK07004460 replicative DNA helicase; Provisional 89.82
PRK13341725 recombination factor protein RarA/unknown domain f 89.82
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 89.75
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 89.62
CHL00095821 clpC Clp protease ATP binding subunit 89.55
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 89.45
PF04408102 HA2: Helicase associated domain (HA2); InterPro: I 89.44
cd01129264 PulE-GspE PulE/GspE The type II secretory pathway 89.35
PHA02544316 44 clamp loader, small subunit; Provisional 89.34
KOG1001674 consensus Helicase-like transcription factor HLTF/ 89.31
PRK05595444 replicative DNA helicase; Provisional 89.3
cd01393226 recA_like RecA is a bacterial enzyme which has rol 89.22
PRK14971614 DNA polymerase III subunits gamma and tau; Provisi 89.02
PF05729166 NACHT: NACHT domain 88.9
PRK07471365 DNA polymerase III subunit delta'; Validated 88.89
PRK06067234 flagellar accessory protein FlaH; Validated 88.82
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 88.78
KOG2028554 consensus ATPase related to the helicase subunit o 88.77
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 88.72
PRK10436462 hypothetical protein; Provisional 88.7
PRK08506472 replicative DNA helicase; Provisional 88.65
KOG0738491 consensus AAA+-type ATPase [Posttranslational modi 88.6
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 88.57
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 88.56
PRK14086617 dnaA chromosomal replication initiation protein; P 88.52
COG0593408 DnaA ATPase involved in DNA replication initiation 88.42
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 88.35
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 88.31
PRK14873665 primosome assembly protein PriA; Provisional 88.28
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 88.25
COG1484254 DnaC DNA replication protein [DNA replication, rec 88.22
PRK06835329 DNA replication protein DnaC; Validated 88.21
PRK08840464 replicative DNA helicase; Provisional 88.1
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 88.08
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 88.03
TIGR02538564 type_IV_pilB type IV-A pilus assembly ATPase PilB. 87.89
TIGR02525372 plasmid_TraJ plasmid transfer ATPase TraJ. Members 87.89
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 87.75
PRK08006471 replicative DNA helicase; Provisional 87.74
PRK09361225 radB DNA repair and recombination protein RadB; Pr 87.69
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 87.63
COG2812515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 87.61
PRK05986191 cob(I)alamin adenolsyltransferase/cobinamide ATP-d 87.6
PRK00440319 rfc replication factor C small subunit; Reviewed 87.57
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 87.56
PHA03372668 DNA packaging terminase subunit 1; Provisional 87.35
PRK06090319 DNA polymerase III subunit delta'; Validated 87.28
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 87.07
CHL00176638 ftsH cell division protein; Validated 86.97
PRK07993334 DNA polymerase III subunit delta'; Validated 86.87
KOG2228408 consensus Origin recognition complex, subunit 4 [R 86.74
TIGR02524358 dot_icm_DotB Dot/Icm secretion system ATPase DotB. 86.36
PRK102631355 DNA translocase FtsK; Provisional 86.33
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 86.25
PRK03992389 proteasome-activating nucleotidase; Provisional 86.25
COG4626546 Phage terminase-like protein, large subunit [Gener 86.24
PRK09183259 transposase/IS protein; Provisional 86.07
PRK06321472 replicative DNA helicase; Provisional 86.03
COG1074 1139 RecB ATP-dependent exoDNAse (exonuclease V) beta s 85.98
COG1198730 PriA Primosomal protein N' (replication factor Y) 85.93
TIGR00959428 ffh signal recognition particle protein. This mode 85.92
COG1435201 Tdk Thymidine kinase [Nucleotide transport and met 85.87
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 85.82
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 85.73
PRK10867433 signal recognition particle protein; Provisional 85.66
PHA00350399 putative assembly protein 85.63
PF12846304 AAA_10: AAA-like domain 85.43
TIGR02533486 type_II_gspE general secretory pathway protein E. 85.37
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 85.37
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 85.15
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 85.04
PF08423256 Rad51: Rad51; InterPro: IPR013632 This domain is f 84.99
PRK13764602 ATPase; Provisional 84.93
cd00561159 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B 84.92
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 84.92
PRK10865857 protein disaggregation chaperone; Provisional 84.92
TIGR00595505 priA primosomal protein N'. All proteins in this f 84.83
PRK05580679 primosome assembly protein PriA; Validated 84.8
TIGR03819340 heli_sec_ATPase helicase/secretion neighborhood AT 84.75
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 84.56
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 84.51
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 84.33
PRK09165497 replicative DNA helicase; Provisional 84.17
smart0084792 HA2 Helicase associated domain (HA2) Add an annota 84.16
PRK07773886 replicative DNA helicase; Validated 84.04
TIGR02788308 VirB11 P-type DNA transfer ATPase VirB11. The VirB 83.75
TIGR00416454 sms DNA repair protein RadA. The gene protuct code 83.64
PLN03187344 meiotic recombination protein DMC1 homolog; Provis 83.59
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 83.53
TIGR00643630 recG ATP-dependent DNA helicase RecG. 83.49
cd01123235 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r 83.4
CHL00195489 ycf46 Ycf46; Provisional 83.17
PF03237384 Terminase_6: Terminase-like family; InterPro: IPR0 83.02
cd01125239 repA Hexameric Replicative Helicase RepA. RepA is 82.75
COG0210655 UvrD Superfamily I DNA and RNA helicases [DNA repl 82.68
PRK09519790 recA DNA recombination protein RecA; Reviewed 82.54
PRK08699325 DNA polymerase III subunit delta'; Validated 82.48
PHA02542473 41 41 helicase; Provisional 82.37
PRK13695174 putative NTPase; Provisional 82.31
KOG0736953 consensus Peroxisome assembly factor 2 containing 82.15
TIGR02784 1141 addA_alphas double-strand break repair helicase Ad 82.12
TIGR00708173 cobA cob(I)alamin adenosyltransferase. Alternate n 81.9
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 81.75
TIGR02238313 recomb_DMC1 meiotic recombinase Dmc1. This model d 81.63
PRK07399314 DNA polymerase III subunit delta'; Validated 81.33
COG0468279 RecA RecA/RadA recombinase [DNA replication, recom 81.23
COG3598402 RepA RecA-family ATPase [DNA replication, recombin 81.17
PF02534469 T4SS-DNA_transf: Type IV secretory system Conjugat 81.16
PF01443234 Viral_helicase1: Viral (Superfamily 1) RNA helicas 81.08
PRK09087226 hypothetical protein; Validated 80.95
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 80.87
PRK08533230 flagellar accessory protein FlaH; Reviewed 80.83
TIGR00767415 rho transcription termination factor Rho. Members 80.8
cd01126384 TraG_VirD4 The TraG/TraD/VirD4 family are bacteria 80.67
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 80.6
PF04665241 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 80.25
PF00154322 RecA: recA bacterial DNA recombination protein; In 80.22
PRK13897606 type IV secretion system component VirD4; Provisio 80.06
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=8.6e-211  Score=1875.19  Aligned_cols=1104  Identities=64%  Similarity=1.019  Sum_probs=1003.1

Q ss_pred             HHHhhHhhhcccccccccCCCcCCCCCCCCCCCcceeecCCCCCccchhcccccCCCcchhhhhccCCCCccccccCCCC
Q 000756          166 LVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPNASGAMQMGGGI  245 (1300)
Q Consensus       166 L~~l~k~ItDy~~~~~~~~~~~~~~~~~~d~~~gV~v~fd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (1300)
                      +|+|+|+||||...++.    ++..+..+++..||+|.|++.|++++.+..+.++++.++|++...++.....++-....
T Consensus         1 lV~l~k~itdy~~~~~s----k~~~d~~~~~~e~v~v~~~e~dde~~~~l~~~vkse~~ed~~~~~ee~~k~~kq~~~~~   76 (1674)
T KOG0951|consen    1 LVKLGKLITDYELEQDS----KKVMDIGIDAAEGVEVEVEEIDDESLQDLFDMVKSELDEDDKNVKEEVAKFVKQVPAII   76 (1674)
T ss_pred             CccccccceeeeecCCc----hhhhhccccccccCccccccCcchhhhHHHHHhhhhhccchhhhhhhhhhhheeccccc
Confidence            58999999999665442    12234556777899999998777766443445543332221111000011111111111


Q ss_pred             CCCCCCCCcCcCCCCCcccCchHHHHHHHHhHhccCCChHHHHHHHHHHHHHHcc-CChhHHHHHHHhccCCCChhHHHH
Q 000756          246 DDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAE-GDDREVENKLLYHLQFDKFSLIKF  324 (1300)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~~~~~~i~~  324 (1300)
                      +. +....+   ....+++||++||||+|+++|.   ++..+|+....+..+|+. .+++++|+.|+.+++|++|.||+.
T Consensus        77 k~-el~~d~---q~t~~~dIda~~LQR~irk~ye---la~~~Qe~~~k~~~ilr~~~~~~~lE~~L~~ll~~e~~slV~~  149 (1674)
T KOG0951|consen   77 KT-ELLIDA---QKTRESDIDAPWLQRKIRKVYE---LASRLQEKERKAAEILRTASDDGDLEPKLVVLLQFEKISLVEF  149 (1674)
T ss_pred             cc-hhhhhh---hhcchhhhhHHHHHHHHHHHHh---cchhhHHHHHHHHHhHhhccCchhhhHHHHHhhhhhhhHHHHH
Confidence            11 111000   1145899999999999999999   565566666666666666 589999999999999999999999


Q ss_pred             HHhchhhhHhHHhhhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHhhhccccCCCCCC
Q 000756          325 LLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRD  404 (1300)
Q Consensus       325 l~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (1300)
                      |++||+.|+|||+|++|..++|+..|++.|+..|..+..++.++..+......+.-+..+....+... .+         
T Consensus       150 l~kNr~~i~~~t~L~~aaresE~~siEe~m~~lgp~l~d~V~~~~a~~~~~~~qeek~~~l~~~e~~~-~~---------  219 (1674)
T KOG0951|consen  150 LRKNRLGIVWCTRLARAARESERLSIEEIMRFLGPELNDIVAKYIATRQTKSEQEEKEKKLEKREELL-VS---------  219 (1674)
T ss_pred             HHhhcchhhHHHHhhhhhccchhccHHHHHhhcChhhHHHHHHHHhhhcccccchhhhhhhhccchhh-hh---------
Confidence            99999999999999999888999999999999863367788888765433211100000111111111 00         


Q ss_pred             ccCCCCCCCCCCCCCccccccccccccccCCcccccccccCCCCcccccCCCceEEeCCCCCCCCCCCCCccccCCCCCh
Q 000756          405 RRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPE  484 (1300)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~eei~vP~~~~~~~~~~~~l~~i~~Lp~  484 (1300)
                      . ....++...++...++++|++.+.|++|+++|++++|.+|+||+|..+++|+++|||++++.|+..++.++.++++|.
T Consensus       220 ~-~~ls~td~~~v~~~~~~iDLekt~ftEGe~lm~e~~c~lP~GS~rl~kk~yeevhVPa~~~~pf~~~Ekl~~iselP~  298 (1674)
T KOG0951|consen  220 V-IALSKTDVLGVLEMRPVIDLEKTCFTEGEELMQEGKCKLPQGSFRLKKKGYEEVHVPAPSYFPFHKEEKLVKISELPK  298 (1674)
T ss_pred             h-hhhcccccccccccCcccchhhhhhhhhhhhhccCceecCCccEEEecCCceEEeCCCCCCCCCCccceeEeecCCcc
Confidence            0 011111222356778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHhhcCCCCCCCHHHHHHHHHHHcCCCeEEEEccCCCccHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcCcHHHHH
Q 000756          485 WAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA  564 (1300)
Q Consensus       485 ~~~~~f~g~~~ln~iQ~~~i~~~l~~~~nvLi~APTGsGKT~va~l~il~~l~~~~~~~g~~~~~~~kiv~iaP~kaLa~  564 (1300)
                      |.+.+|.|..+||++|++++++++.+.+|+++|||||+|||++|++.|++.+..+.+..|..+...++|+|++|+++||+
T Consensus       299 Wnq~aF~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvq  378 (1674)
T KOG0951|consen  299 WNQPAFFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQ  378 (1674)
T ss_pred             hhhhhcccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998888888999999999999999999


Q ss_pred             HHHHHHhhhcccCCcEEEEEeCCCccchhhhccceEEEECcchHHHHHhhcCCCcccccccEEEEecccccccCChhHHH
Q 000756          565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE  644 (1300)
Q Consensus       565 q~~~~~~~~l~~~gi~V~~ltGd~~~~~~~~~~~~IIV~TPekld~l~r~~~~~~~l~~v~liIiDEaH~l~d~rg~~le  644 (1300)
                      +++..|++++..+|++|.++|||.+.+.+++.+++||||||||||+++|+..++.+.+.|+++||||+|++||+|||++|
T Consensus       379 E~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLE  458 (1674)
T KOG0951|consen  379 EMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLE  458 (1674)
T ss_pred             HHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCeeEEEEcccCCChHHHHHHHhccccCceEEecCCcccccceeeEeeeecCchhHHHHHHHHHHH
Q 000756          645 SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCY  724 (1300)
Q Consensus       645 ~iv~rl~~~~~~~~~~~riV~LSATlpn~~dva~~L~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~  724 (1300)
                      +|++|+.+..+.....+|+||||||||||+||+.||++++ .++|+|+++||||||.|+|+|+++++..+++++||+.||
T Consensus       459 SIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~y  537 (1674)
T KOG0951|consen  459 SIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACY  537 (1674)
T ss_pred             HHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc-ccccccCcccCcCCccceEeccccCCchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999997 899999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEEcChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcccchhhhhhhcCCeEEecCCC
Q 000756          725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM  804 (1300)
Q Consensus       725 ~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~L~~ll~~gv~~~Hagl  804 (1300)
                      ++++++++++|||||||||++|.++|+.|++.+.+.+.+..|+++++.+++++..+++..++..|+++|++|+|+|||||
T Consensus       538 eKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl  617 (1674)
T KOG0951|consen  538 EKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGL  617 (1674)
T ss_pred             HHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhCCCccEEEeccccccccCCCCcEEEEecceeccCCCCCcccCCHHHHHHhhhccCCCCCCCceEEEE
Q 000756          805 TRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII  884 (1300)
Q Consensus       805 ~~~dR~~ve~~F~~g~i~VLVaT~tla~GVdlPav~vVI~~t~~yd~~~g~~~~~S~~d~lQr~GRAGR~g~d~~G~~ii  884 (1300)
                      ++.+|..++++|++|+++|||||+|+|||||+|+++|||+||++|||++|+|.++|+.+.+||+|||||||||+.|+++|
T Consensus       618 ~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegii  697 (1674)
T KOG0951|consen  618 NRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGII  697 (1674)
T ss_pred             CcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcHHHHHHhhcCCCCcccchhHhHHHHHHHHHHhccccCHHHHHHHHHhhHHHHHHhcCCcccCCCccccccchhh
Q 000756          885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITL  964 (1300)
Q Consensus       885 l~~~~~~~~y~~ll~~~lPiES~l~~~l~d~lnaEI~~g~i~~~~d~~~wL~~T~ly~r~~~nP~~y~~~~~~~~~~~~l  964 (1300)
                      ++.+++.+||++++++|+||||++.++|.|.|||||++| +++..|+++||+|||||+||.+||.+||++++  .+|..+
T Consensus       698 it~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~--~~d~~l  774 (1674)
T KOG0951|consen  698 ITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPE--ASDRLL  774 (1674)
T ss_pred             ccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcc--cchHHH
Confidence            999999999999999999999999999999999999999 99999999999999999999999999999998  458999


Q ss_pred             hhHHHHHHHHHHHHHHHCCCccccccCCceeeccccccccccccccccHHHHHhhcCCCCChHHHHHHhcCCcccccCcC
Q 000756          965 GERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTV 1044 (1300)
Q Consensus       965 ~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~ias~~yi~~~T~~~~~~~l~~~~~~~~il~ils~s~EF~~i~v 1044 (1300)
                      ++++.+++|+|+..|+++|+|.|++++|.+++|++|+|||+|||.+.+|..|++.|+++|++++++++|+.|.||+++.+
T Consensus       775 e~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~sv  854 (1674)
T KOG0951|consen  775 EQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSV  854 (1674)
T ss_pred             HHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHhcCCCCCCCCCCChhHHHHHHHHHHHhCcCCCCCcchhhHHHHHHhHHHHHHHHHHHHHHhCcHHHHH
Q 000756         1045 RQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAE 1124 (1300)
Q Consensus      1045 R~~E~~eL~~L~~~~p~pvk~~~~~~~~Kv~iLLQa~isr~~l~~~~L~~D~~~I~q~a~RLlral~eI~~~~g~~~~a~ 1124 (1300)
                      |++|+.+|.+|++++|||+++.+++|.+|+|+|||+|+|+++++||+|.+||+||.|+|+|++||+|||++.+||++++.
T Consensus       855 r~~ek~el~~l~~~vpIpire~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~  934 (1674)
T KOG0951|consen  855 REEEKMELAKLLERVPIPIRENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQ  934 (1674)
T ss_pred             cHHHHHHhhhhcccCCcCchhccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCccccccccCCCHHHHHHHHhCCCcchhhccCChHHHhhhhcCCcchHHHHHHHhcCCceeEEEE
Q 000756         1125 KALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAH 1204 (1300)
Q Consensus      1125 ~~l~L~k~i~q~~W~~~~pL~Q~p~i~~~~i~~le~~~~~~~~l~~l~~~el~~ll~~~~~g~~i~~~~~~~P~l~v~~~ 1204 (1300)
                      .+|.+|||+.++||+.++|||||++++.++++++|++.++|.++++|++.|++++++.+++|+.++.++++||++.++++
T Consensus       935 ~~l~~ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~k~~~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~~ 1014 (1674)
T KOG0951|consen  935 MALNLCKMVEKRMWPTQTPLRQFKGCPKEVLRRLEKKELPWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSAH 1014 (1674)
T ss_pred             HHHHhHhHhhhhcccccCchhhcCCCCHHHHHHHHhccCcchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeecCceEEEEEEEecCCccCCCCccccccEEEEEEcCCCCeEEEEeEEEeeeccccceEEEEEEEecCCCCCceEEEE
Q 000756         1205 VQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIR 1284 (1300)
Q Consensus      1205 vqpit~~~l~v~l~i~~~~~w~~~~h~~~e~~wi~v~D~~~~~il~~~~~~l~~~~~~~~~~l~F~vp~~~p~~~~~~v~ 1284 (1300)
                      +|||||++++|+|+++|+|.|++++|+..++||++|||.++++|+|+++|.++++    +|.+.|++|+++| ||+|||+
T Consensus      1015 vqpitr~~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dge~il~~e~~~~~k~----~~~v~ft~~~~~~-pP~~fi~ 1089 (1674)
T KOG0951|consen 1015 VQPITRSVYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDGEKILHHEFFLLKKK----EHTVNFTVPLFEP-PPQYFIR 1089 (1674)
T ss_pred             eeeeeeeEEEEEEEEeecccchhhhcccccceEEEEEccCccceeeeeeEEeccC----ceEEEEEeecCCC-CCceEEE
Confidence            9999999999999999999999999999999999999999999999999999983    8999999999999 9999999


Q ss_pred             EEecCccccceEEECC
Q 000756         1285 VVSDKWLGVLVCVWLN 1300 (1300)
Q Consensus      1285 ~iSD~wlg~d~~~~i~ 1300 (1300)
                      ++||+|+|+++++||+
T Consensus      1090 lvSd~wl~s~~~~Pvs 1105 (1674)
T KOG0951|consen 1090 LVSDRWLHSETVLPVS 1105 (1674)
T ss_pred             EeeccccCCCcccccc
Confidence            9999999999999986

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins Back     alignment and domain information
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>KOG2340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR01074 rep ATP-dependent DNA helicase Rep Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK06904 replicative DNA helicase; Validated Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PRK13851 type IV secretion system protein VirB11; Provisional Back     alignment and domain information
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only] Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>PRK05748 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PRK08760 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>TIGR00665 DnaB replicative DNA helicase Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PRK05636 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13900 type IV secretion system ATPase VirB11; Provisional Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07004 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length Back     alignment and domain information
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK05595 replicative DNA helicase; Provisional Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>PRK10436 hypothetical protein; Provisional Back     alignment and domain information
>PRK08506 replicative DNA helicase; Provisional Back     alignment and domain information
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK08840 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB Back     alignment and domain information
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>PRK08006 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA03372 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] Back     alignment and domain information
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB Back     alignment and domain information
>PRK10263 DNA translocase FtsK; Provisional Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>COG4626 Phage terminase-like protein, large subunit [General function prediction only] Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK06321 replicative DNA helicase; Provisional Back     alignment and domain information
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>PHA00350 putative assembly protein Back     alignment and domain information
>PF12846 AAA_10: AAA-like domain Back     alignment and domain information
>TIGR02533 type_II_gspE general secretory pathway protein E Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 Back     alignment and domain information
>PRK13764 ATPase; Provisional Back     alignment and domain information
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PRK09165 replicative DNA helicase; Provisional Back     alignment and domain information
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation Back     alignment and domain information
>PRK07773 replicative DNA helicase; Validated Back     alignment and domain information
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 Back     alignment and domain information
>TIGR00416 sms DNA repair protein RadA Back     alignment and domain information
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B Back     alignment and domain information
>CHL00195 ycf46 Ycf46; Provisional Back     alignment and domain information
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging [] Back     alignment and domain information
>cd01125 repA Hexameric Replicative Helicase RepA Back     alignment and domain information
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09519 recA DNA recombination protein RecA; Reviewed Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PHA02542 41 41 helicase; Provisional Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type Back     alignment and domain information
>TIGR00708 cobA cob(I)alamin adenosyltransferase Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues Back     alignment and domain information
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein Back     alignment and domain information
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response [] Back     alignment and domain information
>PRK13897 type IV secretion system component VirD4; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1300
4f91_B 1724 Brr2 Helicase Region Length = 1724 0.0
4f92_B 1724 Brr2 Helicase Region S1087l Length = 1724 0.0
2va8_A715 Dna Repair Helicase Hel308 Length = 715 6e-37
2p6r_A702 Crystal Structure Of Superfamily 2 Helicase Hel308 1e-34
2zj2_A720 Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt 5e-31
4a4z_A997 Crystal Structure Of The S. Cerevisiae Dexh Helicas 2e-14
3im1_A328 Structure Of The C-Terminal Sec63 Unit Of Yeast Brr 1e-12
2q0z_X339 Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. 2e-12
3hib_A318 Crystal Structure Of The Second Sec63 Domain Of Yea 1e-10
2xgj_A1010 Structure Of Mtr4, A Dexh Helicase Involved In Nucl 8e-10
3l9o_A1108 Crystal Structure Of Mtr4, A Co-Factor Of The Nucle 1e-09
>pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 Back     alignment and structure 
Iteration: 1

 Score = 1235 bits (3196), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/876 (65%), Positives = 714/876 (81%)
Query: 418  LGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLI 477
            L  RQ+LDL+ L F QG  FMAN++C LP+GS R   KGYEE+HVPA+K KP    E+L+
Sbjct: 2    LAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLL 61
Query: 478  KISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLA 537
             + ++P++AQ  F+G   LNR+QS++Y++AL + +N+LLCAPTGAGKTNVA++ +L+++ 
Sbjct: 62   PVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIG 121
Query: 538  LNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEE 597
             + N DG+ N  ++KI+Y+APM++LV E+VG+   RL  Y + V EL+GD  L +++I  
Sbjct: 122  KHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISA 181
Query: 598  TQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETT 657
            TQIIV TPEKWDIITRK G+RTYTQLV+            +RGPVLE++VAR +R IE T
Sbjct: 182  TQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMT 241
Query: 658  KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717
            +E +RL+GLSATLPNYEDVA FLRV+  KGLFYFDNS+RPVPL Q Y+GI  KK ++RFQ
Sbjct: 242  QEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQ 301
Query: 718  LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREIL 777
            +MN++ YEK++  AGK+QVL+FVHSRKET KTARAIRD  LE DTLG FL+E S S E+L
Sbjct: 302  IMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVL 361
Query: 778  QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837
            ++  +  K+ +LKDLLPYGFAIHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLP
Sbjct: 362  RTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLP 421
Query: 838  AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897
            AHTVIIKGTQ+Y+PEKG WTEL  LDI+QMLGRAGRPQYD+ GEGI+IT H EL+YYLSL
Sbjct: 422  AHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSL 481
Query: 898  MNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEV 957
            +NQQLPIESQ VSKL D LNAEIVLG VQNAK+A NW+GY YLYIRMLR+P LYG++ + 
Sbjct: 482  LNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDD 541
Query: 958  LKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYN 1017
            LK D  L +RR DLVHTAA +LD+NNLVKYD+K+G FQVT+LGRIAS+YYI++ T+ TYN
Sbjct: 542  LKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYN 601
Query: 1018 EHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVL 1077
            + LKPT+ +IEL R+FSLS EFK +TVR++EK+EL KLL+RVPIPVKES+EEPSAKINVL
Sbjct: 602  QLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVL 661
Query: 1078 LQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRM 1137
            LQA+ISQLKLEG +L +DMV++TQSAGRL+RA+FEIVL RGWAQL +K LNL KM+ KRM
Sbjct: 662  LQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRM 721
Query: 1138 WSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFP 1197
            W    PLRQF  +P E++ K+EKK+F +ER YDL+  E+GELIR PKMG+T+HK+VH FP
Sbjct: 722  WQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFP 781
Query: 1198 KLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLK 1257
            KL L+ H+QPITR+ LKVELTITPDF WD+KVHG  E FW++VED D E ILHHEYF+LK
Sbjct: 782  KLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLK 841
Query: 1258 KQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGV 1293
             +Y +++H + F VP++EPLPPQYFIRVVSD+WL  
Sbjct: 842  AKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSC 877
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 Back     alignment and structure
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 Back     alignment and structure
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 Back     alignment and structure
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 Length = 720 Back     alignment and structure
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 Back     alignment and structure
>pdb|3IM1|A Chain A, Structure Of The C-Terminal Sec63 Unit Of Yeast Brr2, P212121 Form Length = 328 Back     alignment and structure
>pdb|2Q0Z|X Chain X, Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. Northeast Structural Genomics Target Hr1979 Length = 339 Back     alignment and structure
>pdb|3HIB|A Chain A, Crystal Structure Of The Second Sec63 Domain Of Yeast Brr2 Length = 318 Back     alignment and structure
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010 Back     alignment and structure
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1300
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 0.0
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 0.0
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 0.0
2q0z_X339 Protein Pro2281; SEC63, SEC, NESG, HR1979, structu 1e-58
3im1_A328 Protein SNU246, PRE-mRNA-splicing helicase BRR2; A 2e-51
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 1e-38
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 3e-38
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 8e-26
3b6e_A216 Interferon-induced helicase C domain-containing P; 3e-25
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 3e-25
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 3e-24
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 2e-22
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 5e-21
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 2e-12
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 2e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 2e-13
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 2e-10
1yks_A440 Genome polyprotein [contains: flavivirin protease 5e-08
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 6e-07
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 9e-07
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 2e-06
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 3e-06
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 5e-06
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 8e-06
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 1e-05
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 1e-05
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 2e-05
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 8e-05
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 1e-04
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 2e-04
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 4e-04
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 4e-04
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 8e-04
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
 Score =  714 bits (1844), Expect = 0.0
 Identities = 173/770 (22%), Positives = 303/770 (39%), Gaps = 90/770 (11%)

Query: 477  IKISE--MPEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTI 532
            +++ E  + E  +   K  G+      Q+   KS +    N L+  PT +GKT +A + +
Sbjct: 1    MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAM 60

Query: 533  LQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592
            + ++               K VY+ P+KAL  E         +   ++V   +GD     
Sbjct: 61   VHRILTQG----------GKAVYIVPLKALAEEKFQEFQ-DWEKIGLRVAMATGDYDSKD 109

Query: 593  QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTV 651
            + + +  II+ T EK+D + R     ++ + VK+L+ DEIHL+   +RG  LE I+A   
Sbjct: 110  EWLGKYDIIIATAEKFDSLLRHG--SSWIKDVKILVADEIHLIGSRDRGATLEVILAHM- 166

Query: 652  RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG----I 707
                      +++GLSAT+ N E++A +L   L        + +RPV L +         
Sbjct: 167  ------LGKAQIIGLSATIGNPEELAEWLNAEL------IVSDWRPVKLRRGVFYQGFVT 214

Query: 708  QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
                 + RF    +L Y+ +     K   LIFV+ R++  + A  +        T     
Sbjct: 215  WEDGSIDRFSSWEELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKSLLTK---- 267

Query: 768  KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST 827
             E     E+  S  +   +  L   +  G A HHAG+ R +R LVE+ F  G ++ +V+T
Sbjct: 268  PEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVAT 327

Query: 828  ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887
             TL+ G+N PA  VII+    Y+        +  +++ QMLGRAGRP+YD  GEGII++ 
Sbjct: 328  PTLSAGINTPAFRVIIRDIWRYSD--FGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVST 385

Query: 888  HSELR--YYLSLMNQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
              + R      +  +   + SQ    S L  Q+ A I        +E   +I  T+    
Sbjct: 386  SDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAY- 444

Query: 944  MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
              +    Y L                + +      L  N  ++        +   LG   
Sbjct: 445  --QRKDTYSL---------------EEKIRNILYFLLENEFIEI-SLEDKIRPLSLGIRT 486

Query: 1004 SYYYISHGTISTYNEHLKPTMGDI---ELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVP 1060
            +  YI   T   + + ++  + D     +  L SL+ +       + E   L +      
Sbjct: 487  AKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFK 546

Query: 1061 -------------IPVKESLEEPSAKINVLLQAYISQLKLEGLS-----LTSDMVFITQS 1102
                          P  E     + K  ++L A+I+++    +         D+  I ++
Sbjct: 547  DRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVET 606

Query: 1103 AGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 1162
            A  L+ +L EI    G  ++ +    L   V   +     PL Q   +       L    
Sbjct: 607  AEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSG 666

Query: 1163 FAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTV 1212
            F      D+S     EL++   +G    + + +F    +    +P   T+
Sbjct: 667  F--RSIEDISQARPEELLKIEGIGVKTVEAIFKFLGKNVKISEKPRKSTL 714
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Length = 339 Back     alignment and structure
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Length = 328 Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1300
d2q0zx1176 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo 2e-44
d2p6ra4201 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob 3e-30
d2p6ra3202 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus 3e-17
d2p6ra185 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobu 1e-16
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 2e-11
d1hv8a1208 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase 2e-10
d1gkub1237 c.37.1.16 (B:1-250) Helicase-like "domain" of reve 2e-09
d1yksa1140 c.37.1.14 (A:185-324) YFV helicase domain {Yellow 1e-08
d1wp9a1200 c.37.1.19 (A:1-200) putative ATP-dependent RNA hel 2e-08
d1oywa2206 c.37.1.19 (A:1-206) RecQ helicase domain {Escheric 3e-07
d1a1va1136 c.37.1.14 (A:190-325) HCV helicase domain {Human h 6e-07
d1rifa_282 c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 3e-05
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 1e-04
d1qdea_212 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 0.003
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 176 Back     information, alignment and structure

class: All alpha proteins
fold: Sec63 N-terminal domain-like
superfamily: Sec63 N-terminal domain-like
family: Sec63 N-terminal domain
domain: Protein pro2281
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  157 bits (397), Expect = 2e-44
 Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 4/173 (2%)

Query: 1028 ELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-SLEEPSAKINVLLQAYISQLK 1086
             L  + S + E++ + +R  E   L +L  +VP  +      +P  K N+LLQA++S+++
Sbjct: 5    GLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQ 64

Query: 1087 LEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQ 1146
            L    L SD   I   A RL++A  +++   GW   A  A+ L++MVT+ MWS  + L+Q
Sbjct: 65   LSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQ 123

Query: 1147 FNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRF-PKMGRTLHKFVHQFP 1197
                 +E + +   K   +     ++  +E   L++        + +F +++P
Sbjct: 124  LPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP 176
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 85 Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1300
d2q0zx1176 Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 100.0
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 100.0
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.96
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.95
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.95
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.94
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.94
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.94
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.94
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 99.94
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.93
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.91
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 99.9
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.88
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.86
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.86
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.84
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.83
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.83
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.82
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.81
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.81
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.8
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.78
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.77
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.77
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.68
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.66
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.66
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.65
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.65
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.62
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.54
d2q0zx2114 Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 99.53
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.52
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.47
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.46
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.46
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.39
d2p6ra185 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.35
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 99.23
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.08
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.07
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.99
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.88
d2p6ra2198 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.5
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.37
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 98.35
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 98.29
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 98.07
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 97.86
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 97.55
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 97.54
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 97.54
d1ls1a2207 GTPase domain of the signal sequence recognition p 96.84
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 96.68
d2qy9a2211 GTPase domain of the signal recognition particle r 96.16
d1vmaa2213 GTPase domain of the signal recognition particle r 95.94
d1okkd2207 GTPase domain of the signal recognition particle r 95.8
d1j8yf2211 GTPase domain of the signal sequence recognition p 95.59
d1w36b1485 Exodeoxyribonuclease V beta chain (RecB), N-termin 94.97
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 94.73
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 94.57
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 94.57
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 94.44
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 94.16
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 94.03
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 93.91
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 93.81
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 93.71
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 93.39
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 92.85
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 91.53
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 91.21
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 90.44
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 90.16
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 90.11
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 89.87
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 89.85
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 89.3
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 88.48
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 88.46
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 87.93
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 87.43
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 87.11
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 85.95
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 85.32
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 84.68
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 84.34
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 83.82
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 82.52
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 82.18
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 81.0
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 80.77
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 80.05
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 80.04
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Sec63 N-terminal domain-like
superfamily: Sec63 N-terminal domain-like
family: Sec63 N-terminal domain
domain: Protein pro2281
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-36  Score=267.39  Aligned_cols=173  Identities=26%  Similarity=0.433  Sum_probs=165.0

Q ss_pred             CCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             8967899884077221338579047999999870299877799-997158999999999827577987301219999994
Q 000756         1024 MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES-LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQS 1102 (1300)
Q Consensus      1024 ~~~~~il~ils~s~EF~~i~vR~~E~~eL~~L~~~~p~pvk~~-~~~~~~Kv~iLLqa~isr~~l~~~~L~~D~~~I~q~ 1102 (1300)
                      +...++|+++|.|.||.++++|++|+.++.+|...+|+|++++ ++.|+.|+++||||||+|.+++ .+|.+|+.||+++
T Consensus         1 t~~k~lL~~ls~a~EF~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~~Llqa~l~r~~l~-~sl~~D~~~I~~~   79 (176)
T d2q0zx1           1 TKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSK   79 (176)
T ss_dssp             CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
T ss_conf             958899999818686622887845899999999868987766665777899999999998489898-8999999999998


Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCC-CCHHHCCCCHHHHHHHHC
Q ss_conf             9999999999999807199999999999999731257743332346889899999981798-511001499588720102
Q 000756         1103 AGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIR 1181 (1300)
Q Consensus      1103 a~RLlral~eI~l~~~w~~~a~~~l~L~k~i~q~~W~~~spL~Qlp~i~~~~i~~le~~~~-~~~~l~~l~~~e~~~ll~ 1181 (1300)
                      ++||++||+|||+.+||+.++.++++|||||+||+|++.+||+||||++++.+++++++++ +++++.++++.|++.+++
T Consensus        80 ~~Rll~al~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~~~~~~~~kl~~~~i~sl~~l~~~~~~e~~~ll~  159 (176)
T d2q0zx1          80 AIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQ  159 (176)
T ss_dssp             HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHC
T ss_conf             99999999999987787899999999999999864999997439786999999999877999899998599999999976


Q ss_pred             C-CCCHHHHHHHHHCCC
Q ss_conf             8-710479999982199
Q 000756         1182 F-PKMGRTLHKFVHQFP 1197 (1300)
Q Consensus      1182 ~-~~~~~~i~~~~~~~P 1197 (1300)
                      . ++++.+|.++++.||
T Consensus       160 ~~~~~~~~i~~~~~~~P  176 (176)
T d2q0zx1         160 LTDSQIADVARFCNRYP  176 (176)
T ss_dssp             CCHHHHHHHHHHHTTSC
T ss_pred             CCHHHHHHHHHHHHHCC
T ss_conf             99999999999997582
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure