Citrus Sinensis ID: 000765

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290-----

MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSNDHPASAPNSTPPHTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRERGERQREREDWHRLKPHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHGVKDTHEQGNCGNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERWTSHKERDFNINSKSSSSLKFKEINKNSNGRTLETSKIPEEPATAVEPVDKQSPMADKKDGSNPENTKPVDDRHLDTVEKLKKRSERFKLPMPSEKDTLAIKKMESEPLPSTKSETAAGSEIKQERPARKRRWISN

cccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccEEEEEccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccHHHccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHcHHHHHHHHHHcHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccHHHHHHcccccHHHHccccHHHHHHHHHccHHHHHHHHccccccccccccccHHHHHcccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHccccHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHcccccccccccccccccccccccccccccccccc

ccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccHcccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEEEEHHHHcccccccccccHHHHHcccccHHHHHHHHHHHHHHHccccccccEEEEccccccccccccEEcccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHccccccHHHHccccccccHHHccccccccccHHHcccHHHHHHHHcccHHHHHcccccHHHHHHHcccHHHHcccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcHHHcccHHHHHHHHHHHHHcHHHccccccccHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHcHHHHHHHHcccccccHcHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHccHHHHHccHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHcccHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHcccccHHcHHHHccHHHHcccccccccHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHccccHHHccccHHHHHHHHccccHHHHHHHcccHHccccccccccccHHccccccHHHHHccHHHccccccHHcccccHHccHHHHHHHHHHHHHHcccccccccHHHHcccccccccccccccccHHHccccccHHHcccccc

medddefgdlytdvlrplsaasqsphqtspaaptslhrpidldlnlksndhpasapnstpphtlaptpplpsfhappradtdgeftdndndvkvKFDIEeanngisndddvpgieipgisqnsvensehqnrnegeageeaeddwesdsedDLQIVLnednhrpmlidggggdddddedgdplvIVADadasnhqglmveeqewggddapaqmgeggaekkegtgerangAAASAATAAAAAKIGysnhfayhnpyhsqfkyvrpgaapipgsatavaaggpgqvrplvnmgpaagrgrgdwrpagmktappmqkgfhpgfgmsasgvnmagrgleftlpshktifevdidgfeekpwkypgvditdffnfglneESWKDYCKQLEQHRLETTMQSKIRVyesgrdqptgraiqveggsgerlpsidtrpprirdsdAIIEIVCqdsvdddssagngdrdndlpredrrgendgaedemgpvdteyFDGFREAYDSRNRElvrheapfmnvahdnipegngllpfppeaplryrpgsrgptpkypgenigtsheqrrrpgrtgdrsprmtpsqspqirkfhdnqdeesvesmegkhsplsspvivRDARELSVEHKDAVhdelvlgdgssavekeetnavttsdsrkdgkalyspktkkinsqveqpelqefdeeedSRAArssenskarsgssrdnkkwregDEEVMQDRRstrmgsmkkhpeeneqsFRRKDREGRQEMERNRMVAIGregshprrdfdpslthdmqmkpegfdrrkerensdgvwqrredepysrknriEDTRKREREHLDEIGarhrgkareseridrdeylhsrkqldngsyrphydkdassrhrerddslKSRYEMVDDYISkrrkddeyvrrdhaekdeilhghrdltsrrkrerDDILDQRRREDQQRIREnfddhhpvrhkdenwsqreRGERQREredwhrlkpheeiLSKREreegrgavrsgrssedrawvgharvkdeykgsdkeyqvkDTVRHSEQLKrreriedesrpphrgredvyargnqisnedrksrqersgtrndrsantsdnnrvnekkhkessrknresevgnhnslvaskrnqedqsghgvkdtheqgncgnekpvhgnssrkekeeassddehqdsrrgrsklerwtshkerdfninsksssslkfkeinknsngrtletskipeepatavepvdkqspmadkkdgsnpentkpvddrhLDTVEKLKKRSerfklpmpsekdTLAIKKmeseplpstksetaagseikqerparkrrwisn

MEDDDEFGDLYTDVLRPlsaasqsphqtspaaptslhRPIDLDLNLKSNDHPASAPNSTPPHTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEAnngisndddvpgIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLettmqskirvyesgrdqptgraiqveggsgerlpsidtrpprirdSDAIIEIVCqdsvdddssagngdrdndlpredrrgendgaedemgpvdTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPtpkypgenigtsheqrrrpgrtgdrsprmtpsqspqirkfhdNQDEESVesmegkhsplsspVIVRDARELSVEHKDAVhdelvlgdgssavekeetnavttsdsrkdgkalyspktkkinsqveqpelqefdeeedsraarssenskarsgssrdnkkwregdeevmqdrrstrmgsmkkhpeeneqsfrrkdregrqeMERNRMvaigregshprrdfdpslthdmqmkpegfdrrkerensdgvwqrredepysrknriedtrkrerehldeigarhrgkareseridrdeylhsrkqldngsyrphydkdassrhrerddslksryemvddyiskrrkddeyvrrdhaekdeilhghrdltsrrkrerddildqrrredqqrirenfddhhpvrhkdenwsqrergerqreredwhrlkpheeilskrereegrgavrsgrssedrawvgharvkdeykgsdkeyqvkdtvrhseqlkrreriedesrpphrgredvyargnqisnedrksrqersgtrndrsantsdnnrvnekkhkessrknresevgnhnslvaskrnqedqsghgvkdtheqgncgnekpvhgnssrkekeeassddehqdsrrgrsklerwtshkerdfninsksssslkfkeinknsngrtletskipeepatavepvdkqspmadkkdgsnpentkpvddrhldTVEKLkkrserfklpmpsekdtlaikkmeseplpstksetaagseikqerparkrrwisn

MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSNDHPASAPNStpphtlaptpplpSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENSEHQNRNegeageeaeddwesdseddLQIVLNEDNHRPMLIdggggdddddedgdPLVIVADADASNHQGLMVEEQEWGGDDAPAQMgeggaekkegtgeRangaaasaataaaaaKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVeqpelqefdeeedsraarssensKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKrerddildqrrredqqrireNFDDHHPVRHKDENWSqrergerqrereDWHRLKPHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHGVKDTHEQGNCGNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERWTSHKERDFNINSKSSSSLKFKEINKNSNGRTLETSKIPEEPATAVEPVDKQSPMADKKDGSNPENTKPVDDRHLDTVEKLKKRSERFKLPMPSEKDTLAIKKMESEPLPSTKSETAAGSEIKQERPARKRRWISN

**********************************************************************************************************************************************************************************************************************************************AAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPI*********************************************************VNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL***********************************************AIIEIVC*****************************************YFDGFR****************FM******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

***DDEFGDLYTDVLR***************************************************PPLPSFHA*********************************DDVPGIEI**************************************IVL************************PLVIVADA***************************************************************HNPYHSQFKYV**********************************************************************GLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLE*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************W***

MEDDDEFGDLYTDVLRPLS***************SLHRPIDLDLNLKSND***********HTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNS****************************DLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQM***************************AAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSV**************LPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIG*************************************************SSPVIVRDARELSVEHKDAVHDELVLGDGSSAV************************************************************************************************************MERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGF*********************SRKNRIEDTRKREREHLDEIG************IDRDEYLHSRKQLDNGSYR*****************LKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKD****************DWHRLKPHEEILSKR******************AWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRR*************REDVYARGNQI***********************************************HNSLVAS******************GNCGNE*****************************KLERWTSHKERDFNINSKSSSSLKFKEINKNSNGRTLETSKIPEEPATAV*********************KPVDDRHLDTVEKLKKRSERFKLPMPSEKDTLAIKKME*******************************

*****EFGDLYTDVLRPLS***********************************************************************DVKVKFDIEEANNGISNDDDVPGI**********************************SEDDLQIVLNED******************DGDPLVIVADADASNHQGLMVEEQEW**D******************************AAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRD*P**RAIQ*E**SGERLPSIDTRPPRIRDSDAIIEIVCQDS****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************S***************************************************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1295	2.2.26 [Sep-21-2011]
Q5XJD3		570	Pre-mRNA 3'-end-processin	no	no	0.051	0.117	0.394	4e-11
Q9D824		581	Pre-mRNA 3'-end-processin	yes	no	0.057	0.129	0.376	8e-11
Q5U317		536	Pre-mRNA 3'-end-processin	yes	no	0.057	0.139	0.376	1e-10
Q5RAA7		588	Pre-mRNA 3'-end-processin	yes	no	0.050	0.110	0.405	1e-10
Q6UN15		594	Pre-mRNA 3'-end-processin	no	no	0.068	0.149	0.343	1e-10
Q09801		344	Pre-mRNA polyadenylation	yes	no	0.036	0.136	0.468	2e-09
Q6FJ55		327	Pre-mRNA polyadenylation	yes	no	0.065	0.259	0.340	1e-07
Q6C784		221	Pre-mRNA polyadenylation	yes	no	0.041	0.244	0.462	1e-07

>sp\|Q5XJD3\|FIP1_DANRE Pre-mRNA 3'-end-processing factor FIP1 OS=Danio rerio GN=fip1l1 PE=1 SV=1	Back alignment and function desciption

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 320 GFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWK 379
           G G    GV++   G    +P    + E D++ FEEKPW+ PG D++D+FN+G NE++WK
Sbjct: 140 GAGAKVKGVDLEAPGSINGVP----VLEADMESFEEKPWRKPGADLSDYFNYGFNEDTWK 195

Query: 380 DYCKQLEQHRL 390
            YC++ ++ R+
Sbjct: 196 AYCEKQKRLRM 206

Involved in mRNA processing.
Danio rerio (taxid: 7955)

>sp\|Q9D824\|FIP1_MOUSE Pre-mRNA 3'-end-processing factor FIP1 OS=Mus musculus GN=Fip1l1 PE=1 SV=1	Back alignment and function description

>sp\|Q5U317\|FIP1_RAT Pre-mRNA 3'-end-processing factor FIP1 OS=Rattus norvegicus GN=Fip1l1 PE=1 SV=1	Back alignment and function description

>sp\|Q5RAA7\|FIP1_PONAB Pre-mRNA 3'-end-processing factor FIP1 OS=Pongo abelii GN=FIP1L1 PE=2 SV=1	Back alignment and function description

>sp\|Q6UN15\|FIP1_HUMAN Pre-mRNA 3'-end-processing factor FIP1 OS=Homo sapiens GN=FIP1L1 PE=1 SV=1	Back alignment and function description

>sp\|Q09801\|FIP1X_SCHPO Pre-mRNA polyadenylation factor fip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22G7.10 PE=3 SV=1	Back alignment and function description

>sp\|Q6FJ55\|FIP1_CANGA Pre-mRNA polyadenylation factor FIP1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=FIP1 PE=3 SV=1	Back alignment and function description

>sp\|Q6C784\|FIP1_YARLI Pre-mRNA polyadenylation factor FIP1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=FIP1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1295
359484826		1417	PREDICTED: uncharacterized protein LOC10	0.909	0.831	0.592	0.0
255565011		1365	ATP binding protein, putative [Ricinus c	0.970	0.920	0.553	0.0
224091696		1336	predicted protein [Populus trichocarpa]	0.962	0.933	0.539	0.0
224142409		1433	predicted protein [Populus trichocarpa]	0.948	0.856	0.526	0.0
449457917		1399	PREDICTED: uncharacterized protein LOC10	0.965	0.893	0.507	0.0
147863604		1798	hypothetical protein VITISV_010335 [Viti	0.729	0.525	0.574	0.0
356533011		1316	PREDICTED: uncharacterized protein LOC10	0.935	0.920	0.492	0.0
356554872		1302	PREDICTED: uncharacterized protein LOC10	0.928	0.923	0.492	0.0
449521886		1174	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.667	0.736	0.544	0.0
297743639		824	unnamed protein product [Vitis vinifera]	0.458	0.720	0.573	0.0

>gi\|359484826\|ref\|XP_002276238.2\| PREDICTED: uncharacterized protein LOC100251960 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1262 bits (3265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 768/1297 (59%), Positives = 911/1297 (70%), Gaps = 119/1297 (9%)

Query: 82   DGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENS-----EHQNRNEGE 136
            D +F + D    V FDIEE + G + D  +  I IPG+S      S     E QNR +  
Sbjct: 157  DVDFMEKD----VNFDIEEVD-GEAGDVGLDPI-IPGLSAAPAIPSLDAPVEPQNREKTN 210

Query: 137  AGEEAEDDW-------ESDSEDDLQIVLNEDNHRPMLIDGGG--GDDDDDEDGDPLVIVA 187
                A DD        +SDSEDDLQIVLN++NH PM  +  G  G DD+DEDGDPLVIVA
Sbjct: 211  V--VARDDASVQGDDWDSDSEDDLQIVLNDNNHGPMAAERNGVMGSDDEDEDGDPLVIVA 268

Query: 188  DADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAA--KIG 245
            D D ++     +EEQEWG D A               GER  GA A+    A A   KIG
Sbjct: 269  DGDQTHPP---LEEQEWGEDTAV-------------DGERKEGADAAKVNGAIAGPPKIG 312

Query: 246  YSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPA 305
            YS+H  YH P+HSQFKYVRPGAAPIPG+A  V  G PGQVRPL N+GP  GRGRGDWRPA
Sbjct: 313  YSSH-GYH-PFHSQFKYVRPGAAPIPGAAAVVPGGTPGQVRPLANIGPVPGRGRGDWRPA 370

Query: 306  GMKTAPPMQKGFHPGFGMSASGVNMAGRG----LEFTLPSHKTIFEVDIDGFEEKPWKYP 361
            G+K APPMQK FH GFG  A G NMAGRG    LEFTLPSHKTIF+VDID FEEKPW++P
Sbjct: 371  GIKNAPPMQKNFHSGFGAPAWGGNMAGRGFGGGLEFTLPSHKTIFDVDIDSFEEKPWRHP 430

Query: 362  GVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQ-------------- 407
            GVDI+DFFNFG NEESWK YCKQLEQ RLE TMQ+KIRVYESGR +              
Sbjct: 431  GVDISDFFNFGFNEESWKQYCKQLEQLRLEATMQTKIRVYESGRTEQEYDPDLPPELAAA 490

Query: 408  ----------------------------------PTGRAIQVEGGSGERLPSIDTRPPRI 433
                                              PTGRAIQVEGG GERLPS+DTRPPR+
Sbjct: 491  VGIHDVSAENGNLGRADVGPSDLAKASARVRPPIPTGRAIQVEGGCGERLPSVDTRPPRV 550

Query: 434  RDSDAIIEIVCQDSVDDDSSAGNGDR---DNDLPREDRRGENDGAEDEMGPVDTEYFDGF 490
            RDSDAIIEI  Q S+DDDS  GNG     DNDLPRED R  N+  ED+    DTEYFD F
Sbjct: 551  RDSDAIIEITLQGSLDDDSPTGNGAPEPPDNDLPREDLRVGNE-VEDDAAQEDTEYFDSF 609

Query: 491  REAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIG 550
               Y  RNRELV   APFMN   D++P G+G+LPFPPEAP++YRPGSRG  P +PG N G
Sbjct: 610  STTYSGRNRELVGRSAPFMNSLRDDMPGGDGILPFPPEAPVQYRPGSRGQDPVHPGGNFG 669

Query: 551  TSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARE 610
            T HE R        +SP MTP QS +  +F D+Q EESVESM+ K    SSPV V   RE
Sbjct: 670  TPHEDR-----AHGKSPHMTPIQSTRDNRFLDSQKEESVESMDVK-GMTSSPVRVAPPRE 723

Query: 611  LSVEHKDAVHDELVLGDGSSAVEKEE--TNAVTTSDSRKDGKALYSPKTKKINSQVEQPE 668
             SVE KDA+   +VL DG+S +E+EE  +N +T++D+ KD   +   K +K++S+VEQP 
Sbjct: 724  PSVEKKDALDGGIVLADGTSGMEREELTSNTMTSTDALKDENLIPFGKKQKLSSRVEQPP 783

Query: 669  LQEFDEEEDSRAARSSENSKARSGSSRDNKKWREG-DEEVMQDRRSTRMGSMKKHPEENE 727
             QE D +ED +A RSSENSKARS SSRD +KW +G +EEV++D  S RMG+ K+H +E+E
Sbjct: 784  PQELDGDEDLKATRSSENSKARSESSRDLQKWHDGGEEEVIEDGSSVRMGNSKRHLDEDE 843

Query: 728  QSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGV 787
            QSFRRKDR+GRQEMER+RMV  GRE ++P RD+D    H   +K + FDRRKER++SDG 
Sbjct: 844  QSFRRKDRDGRQEMERSRMVVKGREDTYPHRDWDSIPNHHSHVKTDSFDRRKERDSSDGG 903

Query: 788  WQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSY 847
            WQRR+D+ + R+ R ED RK+ER   DE+G+RHR K RESER ++DE LHSRK LDNGS+
Sbjct: 904  WQRRDDDLHGRRIRPEDARKQERG--DEMGSRHRSKVRESERSNKDELLHSRKLLDNGSW 961

Query: 848  RPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSR 907
            R H DKD  SRHRERDD+LKSRY  +DD   KRRKD+EY+RRDHAEK+E LH HR+  SR
Sbjct: 962  RGHQDKDMGSRHRERDDNLKSRYGNLDDLHGKRRKDEEYLRRDHAEKEETLHSHRESASR 1021

Query: 908  RKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRERGERQREREDWHRLK-PHE 966
            RKRERDD+LDQR+R+DQ RIR+N DDHH VRHKDE W QRERGERQRERE+WHRL+ PHE
Sbjct: 1022 RKRERDDVLDQRKRDDQPRIRDNLDDHHSVRHKDEGWMQRERGERQREREEWHRLRQPHE 1081

Query: 967  EILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRER 1026
            E LSKREREEGRGAVRSGR +ED+AWV HAR KDEYKGSDK+YQ KDT RHSEQ KRR+R
Sbjct: 1082 ENLSKREREEGRGAVRSGRGAEDKAWVSHARGKDEYKGSDKDYQYKDTGRHSEQPKRRDR 1141

Query: 1027 IEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSR 1086
            +EDES   HRGREDVYARG+Q SNE+R+SRQERS  RND S+N SD+ RV++KKHKE++R
Sbjct: 1142 VEDESFSHHRGREDVYARGSQFSNEERRSRQERSSARNDHSSNASDHQRVHDKKHKENTR 1201

Query: 1087 KNRESEVGNHNSLVASKRNQEDQSGH-----GVKDTHEQGNCGNEKPVHGNSSRKEKEEA 1141
            KN+ESE  + ++L  SKRNQED +         K T EQGN  +E  VH   SRK +E+A
Sbjct: 1202 KNKESEGADISTLGPSKRNQEDHNSQRNETVISKGTSEQGNGEHEILVH-RQSRKHREDA 1260

Query: 1142 SSDDEHQDSRRGRSKLERWTSHKERDFNINSKSSSSLKFKEINKNSNGRTLETSKIPEEP 1201
            SSDDE QDS+RGRSKLERWTSHKERD+N+N K SSS+K KEI +N++G +  T K P+E 
Sbjct: 1261 SSDDEQQDSKRGRSKLERWTSHKERDYNLNIKPSSSIKVKEIERNNSGGSPLTGKFPDES 1320

Query: 1202 ATAVEPVDKQSPMADKKDGS---NPENTKPVDDRHLDTVEKLKKRSERFKLPMPSEKDTL 1258
            A  VE VD Q  + +K  G       + KP++DRHLDTV KLKKRSERFKLPMPSEK+ +
Sbjct: 1321 AKTVEAVDSQQHVEEKDAGDLELKDADMKPMEDRHLDTVAKLKKRSERFKLPMPSEKEAV 1380

Query: 1259 AIKKMESEPLPSTKSETAAGSEIKQERPARKRRWISN 1295
            A+KK+ SE LP   +ET A SEIKQERPARKRRW+ N
Sbjct: 1381 AVKKVGSEALPPAPTETPADSEIKQERPARKRRWVGN 1417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255565011\|ref\|XP_002523498.1\| ATP binding protein, putative [Ricinus communis] gi\|223537205\|gb\|EEF38837.1\| ATP binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224091696\|ref\|XP_002309330.1\| predicted protein [Populus trichocarpa] gi\|222855306\|gb\|EEE92853.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224142409\|ref\|XP_002324551.1\| predicted protein [Populus trichocarpa] gi\|222865985\|gb\|EEF03116.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449457917\|ref\|XP_004146694.1\| PREDICTED: uncharacterized protein LOC101212971 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|147863604\|emb\|CAN81922.1\| hypothetical protein VITISV_010335 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356533011\|ref\|XP_003535062.1\| PREDICTED: uncharacterized protein LOC100803769 [Glycine max]	Back alignment and taxonomy information

>gi\|356554872\|ref\|XP_003545766.1\| PREDICTED: uncharacterized protein LOC100799266 [Glycine max]	Back alignment and taxonomy information

>gi\|449521886\|ref\|XP_004167960.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101227301, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297743639\|emb\|CBI36522.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1295
TAIR\|locus:2155806		1196	FIP1[V] "homolog of yeast FIP1	0.420	0.454	0.386	6.8e-160
FB\|FBgn0031273		826	CG2839 [Drosophila melanogaste	0.364	0.571	0.217	3.5e-20
DICTYBASE\|DDB_G0288797		560	fip1l1 "cleavage and polyadeny	0.102	0.237	0.354	1.2e-18
UNIPROTKB\|E1BWP4		580	Gga.5511 "Uncharacterized prot	0.170	0.381	0.267	5.3e-16
MGI\|MGI:1914149		581	Fip1l1 "FIP1 like 1 (S. cerevi	0.162	0.361	0.297	6e-16
ZFIN\|ZDB-GENE-041010-138		570	fip1l1b "FIP1 like 1b (S. cere	0.051	0.117	0.394	1.2e-15
DICTYBASE\|DDB_G0291063		2110	thoc2 "putative THO2 protein"	0.464	0.285	0.202	5.4e-15
FB\|FBgn0037255		701	Fip1 [Drosophila melanogaster	0.061	0.114	0.385	1.1e-14
RGD\|1309336		536	Fip1l1 "FIP1 like 1 (S. cerevi	0.061	0.147	0.4	5.3e-14
UNIPROTKB\|Q5U317		536	Fip1l1 "Pre-mRNA 3'-end-proces	0.061	0.147	0.4	5.3e-14

TAIR\|locus:2155806 FIP1[V] "homolog of yeast FIP1 [V]" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 842 (301.5 bits), Expect = 6.8e-160, Sum P(2) = 6.8e-160
 Identities = 229/592 (38%), Positives = 318/592 (53%)

Query:   717 GSMKKHPEENEQSFRRKDREG-RQEMERNRMVAIGREGSHP---RRDFDPSLTHDM---Q 769
             G   K    +E S   K R G  ++ ++   V   +  S P   R+ +D +  H     Q
Sbjct:   607 GGESKTERSSESS---KARSGSHRDFQQEEDVIQDKHSSRPANNRKQYDNNAPHQSRKNQ 663

Query:   770 MKPEGFDRRKE-----RENSDGVWQRREDEPYSRKNRIEDTRKREREHLD-EIGAR---- 819
              + +  +R +      RENS+   +      YS  +R ED  KR+   +D  +  R    
Sbjct:   664 DRGKEMERTRAASKGGRENSNPHMELDSTYIYSIASR-EDFDKRKERDVDGAVWRRKEDD 722

Query:   820 ---HRGKARESERIDR--DEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVD 874
                 RG    S + DR  D     R ++     R   D+  S +H + D  +++ YE  D
Sbjct:   723 PYSRRGGDEGSRKRDREDDPGFRQRGKMRENEIRSKDDQVPSRKHMD-DAGMRNIYEP-D 780

Query:   875 DYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKXXXXXXXXXXXXXXXXXXXXNFDDH 934
             D+I+KRRKD+EY+RR   EK+EI +G R+  SR K                    +FDDH
Sbjct:   781 DHINKRRKDEEYLRRSRPEKNEISYGQRESMSRVKRERDDRLEHQKRDVQHKIRDDFDDH 840

Query:   935 HPVRHKDENWSXXXXXXXXXXXXDWHRLK-PHEEILSKREREEGRGAVRSGRSSEDRAWV 993
               +R +D+ +                +LK PHE+ +S R RE  + AVR  R SEDR+  
Sbjct:   841 GSLRQRDDIYMQRDGNERLRERDVLDKLKLPHEDGISARGRER-QVAVRGHRGSEDRS-- 897

Query:   994 GHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDR 1053
               +R+KDEYK SDKE+  KDT+RH++Q KRR+   +ES   HRG ED  AR + I N ++
Sbjct:   898 --SRMKDEYKASDKEHVTKDTLRHAKQTKRRDYPGEESSSHHRGHEDFSARTDNIVNNEK 955

Query:  1054 KSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSG-- 1111
             K RQER+G + D+  +T D  R+ ++KHK+S RK +E   G   SL  SK+ +++ S   
Sbjct:   956 KPRQERTGAKIDKFIDTLDGQRLQDRKHKDSRRKIKEQREGTE-SL--SKQGEQNGSSVV 1012

Query:  1112 HGVKDTHEQGNCGNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERWTSHKERDFNIN 1171
              G K T++  NC +E P   N++++ KE ASS DE  DS+RGR+KLERW SHKER+  ++
Sbjct:  1013 TGSKGTNDARNCRSEIPHQPNTAKRHKENASSGDEIHDSKRGRTKLERWASHKEREDAVS 1072

Query:  1172 SKSSS-SLKFKEINKNSNGRTLET--SKIPEEPATAVEPVDKQSPMADKKDGSNPENTKP 1228
             +KSSS S K +E   N+NGR  E     I +      E +     +AD KDGS     K 
Sbjct:  1073 AKSSSISSKLEEKENNTNGRLSEPVHGSIGKSRDVTEEKIGHD--LADTKDGSE----KG 1126

Query:  1229 VDDRHLDTVEKLKKRSERFKLPMPSEKDTLAIKKMESEPLPSTKSETAAGSE 1280
               DRHLDTVEKLKKRSERFKLPMP+EKDT  +KKMESE LPS K E    SE
Sbjct:  1127 PGDRHLDTVEKLKKRSERFKLPMPTEKDTTGVKKMESETLPSAKIEGPVDSE 1178

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0003723 "RNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006397 "mRNA processing" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

FB\|FBgn0031273 CG2839 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0288797 fip1l1 "cleavage and polyadenylation specificity factor FIP1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BWP4 Gga.5511 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1914149 Fip1l1 "FIP1 like 1 (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041010-138 fip1l1b "FIP1 like 1b (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0291063 thoc2 "putative THO2 protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0037255 Fip1 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

RGD\|1309336 Fip1l1 "FIP1 like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5U317 Fip1l1 "Pre-mRNA 3'-end-processing factor FIP1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00061262	hypothetical protein (1336 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1295
pfam05182		45	pfam05182, Fip1, Fip1 motif	6e-20
COG5213		266	COG5213, FIP1, Polyadenylation factor I complex, s	6e-08
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-04
PRK12678		672	PRK12678, PRK12678, transcription termination fact	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-04
PRK13875		440	PRK13875, PRK13875, conjugal transfer protein TrbL	0.002
TIGR00934		800	TIGR00934, 2a38euk, potassium uptake protein, Trk	0.003

>gnl\|CDD\|191218 pfam05182, Fip1, Fip1 motif	Back alignment and domain information

 Score = 83.8 bits (208), Expect = 6e-20
 Identities = 27/45 (60%), Positives = 37/45 (82%)

Query: 346 FEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL 390
           F+ D++ FEEKPW+ PG DI+D+FN+G NEE+WK YCK+ E+ RL
Sbjct: 1   FDYDLESFEEKPWRKPGADISDYFNYGFNEETWKLYCKKQERLRL 45

This short motif is about 40 amino acids in length. In the Fip1 protein that is a component of a yeast pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase. This region of Fip1 is needed for the interaction with the Th1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor. Length = 45

>gnl\|CDD\|227538 COG5213, FIP1, Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

 Score = 46.7 bits (110), Expect = 1e-04
 Identities = 93/624 (14%), Positives = 231/624 (37%), Gaps = 38/624 (6%)

Query: 631  AVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKAR 690
            A E ++      +++        + + K   ++ ++ E ++  +    +A    +  +A+
Sbjct: 1338 AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397

Query: 691  SGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIG 750
              +  D KK    DE         +    KK  EE     ++K  E +++ E  +     
Sbjct: 1398 KKAEEDKKK---ADELKKAAAAKKKADEAKKKAEE-----KKKADEAKKKAEEAKKADEA 1449

Query: 751  REGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKRER 810
            ++ +   +  + +     + K     ++K  E       +++ E    K + ++ +K   
Sbjct: 1450 KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE--EAKKKADEAKKAAE 1507

Query: 811  EHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRY 870
                   A+   +A++++   + E      +      +   D+   +   ++ +  K   
Sbjct: 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAE 1567

Query: 871  EMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDIL--DQRRREDQQRIR 928
            E      +K+ ++D+ +    AE+ +     R     +  E +  +  ++ ++ ++ +I+
Sbjct: 1568 E------AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621

Query: 929  -ENFDDHHPVRHKDENWSQRERGERQREREDWHRLKPHEEILSKREREEGRGAVRSGRSS 987
             E        + K E   ++E  E+++  E    LK  EE    +  EE + A    + +
Sbjct: 1622 AEELKKAEEEKKKVEQLKKKEAEEKKKAEE----LKKAEEENKIKAAEEAKKAEEDKKKA 1677

Query: 988  EDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQ 1047
            E+         +DE K ++   +  +  + +E+LK++E   +E +     ++       +
Sbjct: 1678 EE----AKKAEEDEKKAAEALKKEAEEAKKAEELKKKE--AEEKKKAEELKKAEEENKIK 1731

Query: 1048 ISNEDRKSRQERSGTRNDRSANTSDNN----RVNEKKHKESSRKNRESEVGNHNSLVASK 1103
                 +++ +++      +            +  E+K  E  RK +E+ +         K
Sbjct: 1732 AEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEK 1791

Query: 1104 RNQE-DQSGHGVKDTHEQGNCGNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERWTS 1162
            R  E D+    + D       G ++     +  KE E+++  +          + + +  
Sbjct: 1792 RRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEK 1851

Query: 1163 HKERDFNINSKSSSSLKFKEINKNSNGRTLETSKIPEEPATAVEPVDKQSPMADKKDGSN 1222
            HK    N N +  +    KE + N      E  +   E A  +E +DK     +  + + 
Sbjct: 1852 HKFNKNNENGEDGN----KEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNM 1907

Query: 1223 PENTKPVDDRHLDTVEKLKKRSER 1246
                  + D  LD  E +K+ +E 
Sbjct: 1908 AGKNNDIIDDKLDKDEYIKRDAEE 1931

Length = 2084

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

 Score = 45.1 bits (106), Expect = 3e-04
 Identities = 104/630 (16%), Positives = 237/630 (37%), Gaps = 51/630 (8%)

Query: 671  EFDEEEDSRAARSSENSKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSF 730
            +FD +ED+RA  ++E +  ++  ++  +  +  +E    +    +    +K  E  +   
Sbjct: 1080 DFDAKEDNRADEATEEAFGKAEEAKKTETGK-AEEARKAEEAKKKAEDARKAEEARKAED 1138

Query: 731  RRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQR 790
             RK  E R+  E  + V I R+    R+        +   K E   + +    ++ V + 
Sbjct: 1139 ARKAEEARKA-EDAKRVEIARKAEDARK-------AEEARKAEDAKKAEAARKAEEVRKA 1190

Query: 791  REDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPH 850
             E        + E  RK E E   E  AR    A+++E + + E      +         
Sbjct: 1191 EELRKAEDARKAEAARKAEEERKAE-EARKAEDAKKAEAVKKAEEAKKDAE--------- 1240

Query: 851  YDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKR 910
               +A     ER++    ++E        RR+    ++ + A K + L        ++  
Sbjct: 1241 ---EAKKAEEERNNEEIRKFEEARMAHFARRQ--AAIKAEEARKADEL--------KKAE 1287

Query: 911  ERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRERGERQREREDWHRLKPHEEILS 970
            E+    + ++ E++++  E        +  DE   + E  +++ +       K  EE   
Sbjct: 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAK----KKAEEAKK 1343

Query: 971  KRE--REEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIE 1028
              E  + E   A     ++E++A     + ++  K +D   +  +  + +++ K++   +
Sbjct: 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403

Query: 1029 DESRPPHRGREDVYARGNQI---SNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESS 1085
             +     +       + ++    + E +K+ + +      + A+ +       KK +E+ 
Sbjct: 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAK 1463

Query: 1086 RKNRESEVGNHNSLVASKRNQEDQSGHGVKDTHEQGNCGNEKPVHGNSSRKEKEEASSDD 1145
            +K  E++  +     A K+ +E +     K   E+     ++      ++K+ +EA   +
Sbjct: 1464 KKAEEAKKADE----AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE 1519

Query: 1146 EHQDSRRGRSKLERWTSHKERDFNINSKSSSSLKFKEINKNSNGRTLETSKIPEEPATAV 1205
            E + +   +   E   + + +      K+    K +E+ K    +  E +K  EE     
Sbjct: 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579

Query: 1206 EPVDKQSPMADKKDGSNP----ENTKPVDDRHLDTVEKLKKRSERFKLPMPSEKDTLAIK 1261
                +++  A++          E  K +        E+ K ++E  K     +K    +K
Sbjct: 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639

Query: 1262 KMESEPLPSTKSETAAGSE--IKQERPARK 1289
            K E+E     +    A  E  IK    A+K
Sbjct: 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669

Length = 2084

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

 Score = 44.0 bits (103), Expect = 6e-04
 Identities = 101/653 (15%), Positives = 253/653 (38%), Gaps = 53/653 (8%)

Query: 644  DSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKARSGSSRDNKKWREG 703
            D+RK  +A  +   KK  +  +  E+++ +E   +  AR +E ++      +  +  +  
Sbjct: 1162 DARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAE 1221

Query: 704  DEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPS 763
            D +  +  +  +    KK  EE +++   ++ E  ++ E  RM    R  +  + +   +
Sbjct: 1222 DAKKAEAVK--KAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE--EA 1277

Query: 764  LTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGK 823
               D   K E   +  E + ++   +  E +  + + +  D  K++ E   +     + K
Sbjct: 1278 RKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKK 1337

Query: 824  ARESERID---RDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKR 880
            A E+++     + E   +  + +    +    +      +++ D+ K + E       ++
Sbjct: 1338 AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE-------EK 1390

Query: 881  RKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHK 940
            +K DE  ++  AE+D             K++ D++  ++    +++  E        +  
Sbjct: 1391 KKADEAKKK--AEED-------------KKKADEL--KKAAAAKKKADEAKKKAEEKKKA 1433

Query: 941  DENWSQRERGERQREREDWHRLKPHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKD 1000
            DE    +++ E  ++ ++           +K++ EE + A  + + +E+      A+ K 
Sbjct: 1434 DE---AKKKAEEAKKADE-----------AKKKAEEAKKAEEAKKKAEEAKKADEAKKKA 1479

Query: 1001 EYKGSDKEYQVK--DTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQE 1058
            E      E + K  +  + +++ K+    + ++    +  E   A   + + E +K+ + 
Sbjct: 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539

Query: 1059 RSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHGVKDTH 1118
            +   + +      +  +  E K  E  +K  E++    +  +A ++ +E +     +   
Sbjct: 1540 K---KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEE 1596

Query: 1119 EQGNCGNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERWTSHKERDFNINSKSSSSL 1178
                   EK +    ++K +E     +E + +   + K+E+    +  +     +   + 
Sbjct: 1597 VMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAE 1656

Query: 1179 KFKEINKNSNGRTLETSKIPEEPATAVEPVDKQSPMADKK---DGSNPENTKPVDDRHLD 1235
            +  +I      +  E  K   E A   E  +K++  A KK   +    E  K  +     
Sbjct: 1657 EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716

Query: 1236 TVEKLKKRSERFKLPMPSEKDTLAIKKMESEPLPSTKSETAAGSEIKQERPAR 1288
              E+LKK  E  K+     K      K ++E     + E    + +K+E   +
Sbjct: 1717 KAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKK 1769

Length = 2084

>gnl\|CDD\|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	Back alignment and domain information

>gnl\|CDD\|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1295
KOG1049		538	consensus Polyadenylation factor I complex, subuni	100.0
PF05182		45	Fip1: Fip1 motif; InterPro: IPR007854 This short m	99.89
COG5213		266	FIP1 Polyadenylation factor I complex, subunit FIP	99.83
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	86.43

>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=1.4e-44  Score=403.53  Aligned_cols=500  Identities=21%  Similarity=0.244  Sum_probs=340.8

Q ss_pred             ccCCcccccccCCCccCceEEeccCCCCCccccCCCCCCCCCCCCCceEEEecCCCCCccCcchhhcccCCCCCcccCCC
Q 000765          136 EAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGE  215 (1295)
Q Consensus       136 ~~~~~~~ddwdSDSeDdlqiVlNd~~~~p~~~~r~~gdddddeD~d~lvivadg~~~~~~~~~~Eeq~Wg~~~a~~~~G~  215 (1295)
                      .+.++.++.|+.|.|+.+++|++...-+.|+..-   |-+|.+|++.++||++.+.+    ..++.++|..+.  ..-|.
T Consensus        24 ~~e~~~~~~e~~d~ee~~~~~~p~e~~~~~~~~~---~~~d~dDd~~~~~~~e~d~~----~~d~~s~~~~d~--~~~~~   94 (538)
T KOG1049|consen   24 EDEAETGASEDPDIEERVKSVSPGESKKFDVVAD---DSDDCDDDDEEMESLEPDPE----SLDSDSDDDEDS--SLKDE   94 (538)
T ss_pred             ccccccccccCccHHHhhcccCCccccccccccc---ccccCCchhhhhccCCCCcc----cccccccchhcc--ccCCc
Confidence            4566778899999999999999999876554211   12555667778888877766    788999998771  11111


Q ss_pred             CCcccccCcccccCcchhhhhhhcccccccccCCCCcCCCCCCcccccCCCCCCCCCCcccCCCCCCCccCCCccCCCCC
Q 000765          216 GGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAA  295 (1295)
Q Consensus       216 ~gaerk~ggge~~~~~~~~~g~a~~~~kiGys~~g~~~hp~HsqfKYVRPgaa~~pga~~~~~~g~pgqvrp~~~~~~~a  295 (1295)
                      .+        .+ .     ...++                     ||+.++.+..+++...+...+.+|+          
T Consensus        95 ~~--------~~-~-----~~~~~---------------------k~~~~~~a~~~~~~~~v~i~t~~~~----------  129 (538)
T KOG1049|consen   95 DD--------VA-V-----DESAV---------------------KTSDDQEASEGSSDQNVTIRTVKAT----------  129 (538)
T ss_pred             cc--------cc-c-----ccccc---------------------cccCccccccCCCcceeeecccccc----------
Confidence            11        11 0     00000                     8999999999998888877777766          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCccccccCCCCCcceeecCCCcCCCCCCCCCCCCcccccCCCCH
Q 000765          296 GRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNE  375 (1295)
Q Consensus       296 GrgrGdWrp~g~k~~~~~~k~~h~g~~~~~~G~~~~GrG~eF~lp~~k~IfdvDID~~eeKPWRkPGADISDYFNYGFnE  375 (1295)
                                   .++..++++|.     +|+-.+.|...      ..+||+||||.|++||||+|||||||||||||||
T Consensus       130 -------------~~~a~~kg~~~-----~~dld~~g~in------~v~I~evDldsfEdKPWRkPGADiSDYFNYGFNE  185 (538)
T KOG1049|consen  130 -------------NKSAAPKGKMS-----QVDLDTPGTIN------GVPIFEVDLDSFEDKPWRKPGADISDYFNYGFNE  185 (538)
T ss_pred             -------------ccccccccCcc-----cccccCCcccC------CccceeecHHHhccCcccCCCccchhhhccccCH
Confidence                         11223555553     34433333332      2389999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhccccchhhcccCC---CCCCCceeeecCCCCCCCCCCCCCCCCccCCC-CceEEEeccCccCC
Q 000765          376 ESWKDYCKQLEQHRLETTMQSKIRVYESGR---DQPTGRAIQVEGGSGERLPSIDTRPPRIRDSD-AIIEIVCQDSVDDD  451 (1295)
Q Consensus       376 ~TWr~Yc~kq~qlR~E~tmqsKI~~yESg~---~lptGRaIQVEgg~geR~PS~D~RpPR~rDSD-aIIeIv~qdS~Dd~  451 (1295)
                      +||++||++|++||.+|+++..+.+++..+   .+++.-.||..+-    .|.+       .... +-..++|.++.--.
T Consensus       186 eTWk~YC~rQkrlrie~~~~~~~~~~e~~r~~~~~~~~l~~q~~g~----~p~~-------~~ts~~~~~~~~~~~~~~~  254 (538)
T KOG1049|consen  186 ETWKAYCERQKRLRIEFAGGGLERTTEPLRRQRDLFGELKIQIPGP----GPVG-------NLTSRTSVGARGIDSNQRP  254 (538)
T ss_pred             HHHHHHHHHHhhhhhhhcccccccccccccccccCcchhhhccCCC----CCcc-------ccCCccccccccCCCCCCC
Confidence            999999999999999999988888887654   3444444444431    1111       1110 11112222111110


Q ss_pred             CCCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccccccccccchhhhcccccCcccccccCCCCCCCCC-------CC
Q 000765          452 SSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGL-------LP  524 (1295)
Q Consensus       452 ~s~~n~~q~n~~~r~d~r~~~~~~e~~M~~~~~ey~~gfpq~y~~r~~~~~~~~~P~mNs~~~n~pegd~~-------lp  524 (1295)
                              .+.                   +.+.+...-...+.|.     ....|+.|+-..++--|++.       .|
T Consensus       255 --------~~~-------------------~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~r~g~~~~~~~~~~~p  302 (538)
T KOG1049|consen  255 --------AND-------------------VPPSGGGRPLMSVTGS-----RPAEPSSNSQAPGARSGSGEPSGMSEPPP  302 (538)
T ss_pred             --------CCC-------------------CCCCCCCcccccccCC-----cCcCCCCCccCccccCCCCCCCCCCCCCC
Confidence                    000                   0001100000001100     11233333322233333322       23


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCCCCCCCCCchhhcccccchhhhhhhccCCCCCC-CCCc
Q 000765          525 FPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPL-SSPV  603 (1295)
Q Consensus       525 ~~~~~p~~~~~gsrg~~p~~~g~~~gtp~e~r~~~gr~~~~Sp~~tP~Qs~~~krf~Dsq~EEs~ESmdgk~s~~-sSPv  603 (1295)
                      +-...|.++.-..-|..++ |-.++-          .+..+.++++|.|+...+--|..+.|....|.++..|.. ..|.
T Consensus       303 ~~~a~p~~~~~~~~~~~~s-p~~~~t----------~Pg~~~ap~~p~~~~~~p~s~g~~~e~~~~s~~~~~s~~~~p~g  371 (538)
T KOG1049|consen  303 SMEAGPSQKERLPPGPEES-PPSNET----------APGASEAPSSPGDSGPPPSSLGPNEESDDYSTESGKSARTDPPG  371 (538)
T ss_pred             CcCCCCChhhccCCCcCCC-CCcCCC----------CCCcccCCCCCCCCCCCccccCcCCCCCCcccccccccccCCCc
Confidence            3333344444444443333 112222          245577888899988889899999999999999988887 7888


Q ss_pred             cccccccccccccccccccccccCCCcchhhcccccccccCcccCCCcccCcccccccccccCCccccCChhHHHHHhhc
Q 000765          604 IVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARS  683 (1295)
Q Consensus       604 ~v~dare~S~E~kD~~d~e~~~adgss~~~~dE~n~~T~~D~~kd~~l~hs~kkqK~~S~veQp~~qe~d~~~dska~rs  683 (1295)
                      .|+.+.. ++.-.+.....+  .++.       +                 .-..++.+...+...+. ++..-++.+|.
T Consensus       372 ~~~~pp~-~~h~~~~~~~s~--~~~~-------~-----------------~~~~~m~~~~~~~~~~~-r~~~rs~~~r~  423 (538)
T KOG1049|consen  372 EVRPPPQ-SAHLAAPEGPSP--KRGE-------S-----------------SPDMYMRHRSPHSRSRD-RDNGRSGYRRR  423 (538)
T ss_pred             ccCCCcc-ccccccCCCCCC--Cccc-------c-----------------CccccccCCCccccccc-ccccccchhhh
Confidence            8888766 555554311122  1111       1                 13346677777888888 77888889999


Q ss_pred             ccccccccCCcccchhhccCcccccccccccccCCcCCCCCccchhhhhhhhhhhHHHHhhhhhhc-ccCCCCCCCCCCC
Q 000765          684 SENSKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAI-GREGSHPRRDFDP  762 (1295)
Q Consensus       684 SenSkaRSgSskD~qk~~egeEeV~Qd~~S~r~g~~rrh~de~e~~~rRKdrd~r~emER~r~~~~-gRe~syp~rd~dp  762 (1295)
                      |+.+++++++.||.|.    +|-|++++.|.+.-++++|+..+....+||.+|.-.||||.|..+. +++..-+||-||-
T Consensus       424 ~~~~s~~~~~~rd~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~rk~~d~~REr~~rr~~~~~~~d~~~~~r~~~~  499 (538)
T KOG1049|consen  424 SRSRSPTRDPGRDKKP----GELVGLGRDSSKRWRNGPPRTLERDETSRKKVDRDREREHRRKESSVDKDRHREHRRWDE  499 (538)
T ss_pred             hhcccCCCCcccCCCC----CcccccccccChhhhccCCCccccccccccccchhhHHHHHHhhhccchhhcchhhhhhh
Confidence            9999999999999999    9999999999999999999999999999999999999999999998 8899999999999


Q ss_pred             CCcccccCCCCCccccccccCCcccccccccCcccccc
Q 000765          763 SLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKN  800 (1295)
Q Consensus       763 ~~~~~~~~~~e~~Dr~keren~d~~Wqrredd~~~rr~  800 (1295)
                      ..... ..+++.|++.|+++.....|..+....++++.
T Consensus       500 ~~e~s-~~r~~~~~kskr~~~~~~~~s~~~~~~e~~~~  536 (538)
T KOG1049|consen  500 NEESS-SGRREDHSKSKRSGTHLEEYSSRSSFDESQRN  536 (538)
T ss_pred             ccccc-cccchhcchhhhccccchhhccCCCccccccc
Confidence            87766 67889999999999999999999999998875

>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []	Back alignment and domain information

>COG5213 FIP1 Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1295
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 49.1 bits (116), Expect = 1e-05
 Identities = 66/494 (13%), Positives = 148/494 (29%), Gaps = 118/494 (23%)

Query: 850  HYDKDASS-RHRERDDSLKSRYEMVDDYISKRRKD------DEYVRR--DHAEKDEILH- 899
            H D +    +++ +D        ++  +      +       +  +      E D I+  
Sbjct: 6    HMDFETGEHQYQYKD--------ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS 57

Query: 900  GHRDLTSRR-------KRER------DDILDQRRREDQQRIRENFDDHHPVRHKDENWSQ 946
                  + R       K+E       +++L    +     I+       P         Q
Sbjct: 58   KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PSMMTRMYIEQ 115

Query: 947  RERGERQRER-EDWH--RLKPHEEI---LSKREREEG---RGAVRSGRSSEDRAWVGHAR 997
            R+R     +    ++  RL+P+ ++   L +    +     G + SG++     WV    
Sbjct: 116  RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-----WVALDV 170

Query: 998  VKDEYKGSDKEYQV-----KDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNE- 1051
                      ++++     K+       L+  +++  +  P    R D  +      +  
Sbjct: 171  CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 1052 -DRKSRQERSGTRNDRSANTS----DNNRVNEKKHKE----SSR---KNRESEVGNHNSL 1099
                 R  +S     +          N  V   K       S +     R  +V +   L
Sbjct: 231  QAELRRLLKS-----KPYENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTD--FL 281

Query: 1100 VASKRNQEDQSGHGVKDTHEQG-----NCGNEKPVHGNSSRKEKEEASSDDEHQDS---R 1151
             A+         H +  T ++         + +P      +    E  + +  + S    
Sbjct: 282  SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP------QDLPREVLTTNPRRLSIIAE 335

Query: 1152 RGRSKLERWTSHKERDFN-INSKSSSSLK----------FKEI---NKNSN--GRTLE-- 1193
              R  L  W + K  + + + +   SSL           F  +     +++     L   
Sbjct: 336  SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 1194 -TSKIPEEPATAVEPVDKQSPMADKKDGSNPENTKPVDDRHLDTVEKLKKRS-------E 1245
                I  +    V  + K S + +K+     E+T  +   +L+   KL+          +
Sbjct: 396  WFDVIKSDVMVVVNKLHKYS-LVEKQ---PKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 1246 RFKLPMPSEKDTLA 1259
             + +P   + D L 
Sbjct: 452  HYNIPKTFDSDDLI 465

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00