Citrus Sinensis ID: 000783

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------129

MAAVPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANNSRPEAEQQSMHHVGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIKFENTVSAFETLPQRGV

cccccHHHHHHHccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcEEEEEEcccccccHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHcccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHEEccccccccccccccccccccHHHHHHHHHHcccccHHHccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc

cccccHHHHHHHHHcccccccccccccccEEEEEccccccccccHHcHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHEEEEEEEEEEEEEcccHHHHHHHHHHccHHHHHHHHHccccEcccccccccHHHHHHHcccccccccccccccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccHHHHHHHHHccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccHHHHHHHHHHHHcccccEEEccccccEEccccccccccccccccccccEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccccccccHHHHHHHHHHccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccHHcccccccccccccccHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcHccHHHccccHHHHHHHHHHHHHHHcccccccccccccEEEccccHHHHHHHHHHHHEEEcccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEcccccHcHHHccccccc

MAAVPVEEAIAALSTfsledeqpevqgpsvlvstergataspieysdvnayRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSCVkalpqlpnsmkhsqadLYLETYQVLDLEMSRLREIQRWQASAASKLAADMqrfsrperringptITHLWSMLKLLDVLVQLDHLknakasipndfswykRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLAtssekdsesLYKRVKINRLInifksdpvipafpdlhlspAAILKELSMYFQKFSAQtrlltlpaphelppreaqDYQRHYLIANHiggiraehdDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWkfsrpykdavpsetneasasysdyekVVRYNYSAEERKALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSadwmannsrpeaeqqsmhhvgeesrgnifypravaptaaQVHCLQFLIYEVVsggnlrkpgglfgntgseipvnELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSrviqfpiecslpwmLVDHVLESqnagllesvmmpfdiYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAaselldpsflfssdngekysvqpMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMqsdflpnfilcnttqrfirsskvplasvqkpsvpyakpsfycgtqdlnsAHQSFARLhsgffgipHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQetlpksigllhfdsgVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREvdtthfmqtapwlgflpgadgqisyhqdggdspvvnLFKSATAAivsnpgcpnptsfhtMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYcskwsatpktgfidittskdfyRIYSGLQIGyleessqspsnnhkvlgdsvawGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEaisvpqsqkhphfgQGWEALIEAMKKARRLNNHVFSMLkarcpledktacaikqsgaplhrikfentvsafetlpqrgv

MAAVPVEEAIAALstfsledeqpevQGPSVLVStergataspieysdVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKlaadmqrfsrperrinGPTITHLWSMLKLLDVLVQLDHLKNAKasipndfswykRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLatssekdseslykrVKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSrpykdavpsetneasasysdyeKVVRYNYSAEERKALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLrttfrkkkdlsrILSDMRTLSADWMANNSRPEAEQQSMHHVGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCSKwsatpktgfidittsKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKqsgaplhrikfentvsafetlpqrgv

MAAVPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVFAVESLELDFALLFPERHIllrvlpvlvvlATSSEKDSESLYKRVKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANNSRPEAEQQSMHHVGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIKFENTVSAFETLPQRGV

********************************************YSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQA*******************INGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATS*****ESLYKRVKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPA*********QDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYK*************YSDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILS********************************NIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSN*****************AADLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYL***********KVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIKFENTV***********

***VPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSC*******************LETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFT****************DDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKD*******VKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQ***********************YLIANHIGGIRAEHDDFTIRFASAMNQLL*****************GNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPY***************SDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSAD*******************************VAPTAAQVHCLQFLI***************************LKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFI**********************YCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGAD****************LFKSATAAIVS********************DLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVE**************QGWEALIEAMKKARRLNNHVFSMLKARC***********QSGAPLHRIK***********P****

MAAVPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPY**************YSDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANNS**************ESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYLE*********HKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIKFENTVSAFETLPQRGV

**AVPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANN*****************RGNIFYPRAVAPTAAQVHCLQFLIYEVVSGG*************SEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACA**QSGAPLHRIKFENTVSAFET******

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1287	2.2.26 [Sep-21-2011]
Q5S2C3		1282	Protein PIR OS=Arabidopsi	yes	no	0.993	0.997	0.857	0.0
Q6UK63		1336	Protein pirA OS=Dictyoste	yes	no	0.926	0.892	0.317	1e-176
Q90YM8		1253	Cytoplasmic FMR1-interact	yes	no	0.919	0.944	0.302	1e-152
Q5SQX6		1253	Cytoplasmic FMR1-interact	yes	no	0.919	0.944	0.298	1e-150
Q6GQD1		1253	Cytoplasmic FMR1-interact	N/A	no	0.919	0.944	0.297	1e-149
Q5R414		1253	Cytoplasmic FMR1-interact	yes	no	0.919	0.944	0.298	1e-149
Q7L576		1253	Cytoplasmic FMR1-interact	no	no	0.939	0.964	0.295	1e-148
Q7TMB8		1253	Cytoplasmic FMR1-interact	no	no	0.925	0.950	0.295	1e-147
Q96F07		1278	Cytoplasmic FMR1-interact	yes	no	0.926	0.932	0.295	1e-147
Q299G2		1291	Cytoplasmic FMR1-interact	yes	no	0.913	0.910	0.284	1e-143

>sp\|Q5S2C3\|PIR_ARATH Protein PIR OS=Arabidopsis thaliana GN=PIR PE=1 SV=2	Back alignment and function desciption

 Score = 2298 bits (5954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1102/1285 (85%), Positives = 1198/1285 (93%), Gaps = 6/1285 (0%)

Query: 3    AVPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKAL 62
            AVPVEEAIAALSTFSLEDEQPEVQGP+V+VS ER AT SPIEYSDV AYRLSLSEDTKAL
Sbjct: 2    AVPVEEAIAALSTFSLEDEQPEVQGPAVMVSAERAATDSPIEYSDVAAYRLSLSEDTKAL 61

Query: 63   NQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQ 122
            NQLNTLIQEGKEMAS+LYTYRSCVKALPQLP SMKHSQADLYLETYQVLDLEMSRLREIQ
Sbjct: 62   NQLNTLIQEGKEMASILYTYRSCVKALPQLPESMKHSQADLYLETYQVLDLEMSRLREIQ 121

Query: 123  RWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFS 182
            RWQ+SA++KLAADMQRFSRPERRINGPT+THLWSMLKLLDVLVQLDHLKNAKASIPNDFS
Sbjct: 122  RWQSSASAKLAADMQRFSRPERRINGPTVTHLWSMLKLLDVLVQLDHLKNAKASIPNDFS 181

Query: 183  WYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVF 242
            WYKRTFTQVS QWQDTD+MREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVF
Sbjct: 182  WYKRTFTQVSAQWQDTDTMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVF 241

Query: 243  AVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKSDPVIP 302
             VESLELDFALLFPER+ILLRVLPVLVVLAT SEKD+E+LYKRVK+NRLINIFK+DPVIP
Sbjct: 242  IVESLELDFALLFPERYILLRVLPVLVVLATPSEKDTEALYKRVKLNRLINIFKNDPVIP 301

Query: 303  AFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIR 362
            AFPDLHLSPAAILKELS+YFQKFS+QTRLLTLPAPHELPPREA +YQRHYLI NHIG +R
Sbjct: 302  AFPDLHLSPAAILKELSVYFQKFSSQTRLLTLPAPHELPPREALEYQRHYLIVNHIGALR 361

Query: 363  AEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQC 422
            AEHDDFTIRFAS+MNQLLLLKS D A  EWC+EVKGNMYDMV+EGFQLLS+WTARIWEQC
Sbjct: 362  AEHDDFTIRFASSMNQLLLLKSNDGAYTEWCREVKGNMYDMVVEGFQLLSRWTARIWEQC 421

Query: 423  AWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSD 482
            AWKFSRP +DA   ET EAS SYSDYEKVVR+NY+AEERKALVELV YIK++GSM+ R D
Sbjct: 422  AWKFSRPCRDA--GETPEASGSYSDYEKVVRFNYTAEERKALVELVGYIKSVGSMLQRCD 479

Query: 483  TLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANNSRPEA 542
            TLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMA N+RPE 
Sbjct: 480  TLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMA-NTRPEH 538

Query: 543  EQQSMHHVGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIP 602
            E  S  H  +ESRGN FYPR VAPTAAQVHCLQFLIYEVVSGGNLR+PGG FGN GSEIP
Sbjct: 539  EMPSSQHGNDESRGNFFYPRPVAPTAAQVHCLQFLIYEVVSGGNLRRPGGFFGNNGSEIP 598

Query: 603  VNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWM 662
            VN+LKQLE+FFYKLSFFLHILDY+A++  LTDLGFLWFREFYLESSRVIQFPIECSLPWM
Sbjct: 599  VNDLKQLETFFYKLSFFLHILDYSASIGILTDLGFLWFREFYLESSRVIQFPIECSLPWM 658

Query: 663  LVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLC 722
            L+D++LE+QN+GLLESV++PFDIYNDSAQQALVVL+QRFLYDEIEAEVDH FDIFVSRL 
Sbjct: 659  LIDYILEAQNSGLLESVLLPFDIYNDSAQQALVVLRQRFLYDEIEAEVDHGFDIFVSRLS 718

Query: 723  ETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIA 782
            E+IFTYYKSW+ASELLDPSFLF+ DNGEK+S+QP+R +ALFKMT+VK+LGR+INLRSLIA
Sbjct: 719  ESIFTYYKSWSASELLDPSFLFALDNGEKFSIQPVRFTALFKMTKVKILGRTINLRSLIA 778

Query: 783  ERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQ 842
            +RMN++FRENLEFLFDRFESQDLCA+VELEKL+DILKH+HELLS+DLSID F L+LNEMQ
Sbjct: 779  QRMNRIFRENLEFLFDRFESQDLCAVVELEKLIDILKHSHELLSQDLSIDPFSLMLNEMQ 838

Query: 843  ENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSF 902
            ENISLVSFSSRLA+QIWSEMQSDFLPNFILCNTTQRF+RSSKVP    QKPSVP AKPSF
Sbjct: 839  ENISLVSFSSRLATQIWSEMQSDFLPNFILCNTTQRFVRSSKVP--PTQKPSVPSAKPSF 896

Query: 903  YCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPL 962
            YCGTQDLN+AHQSFARLHSGFFGIPH+FSIV+LLGSRSLPWLIRALLDH+SNKITTLEP+
Sbjct: 897  YCGTQDLNAAHQSFARLHSGFFGIPHLFSIVKLLGSRSLPWLIRALLDHISNKITTLEPM 956

Query: 963  IMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGL 1022
            I GLQE LPKSIGLL FD GVTGCM+L++EQLNWGTKSELK+EVL GIKEIGSV+Y MGL
Sbjct: 957  ISGLQEALPKSIGLLSFDGGVTGCMKLIREQLNWGTKSELKSEVLRGIKEIGSVIYTMGL 1016

Query: 1023 LDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPN 1082
            LDIVLREVDT  FMQTAPWLG +PGA+GQI   QD G+SP+VNL KSAT+A+VS+PGC N
Sbjct: 1017 LDIVLREVDTKRFMQTAPWLGLIPGAEGQIVNAQD-GESPLVNLLKSATSAVVSSPGCLN 1075

Query: 1083 PTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGFIDITTS 1142
            P +F+TMSKQAEAADLLYKANMN GSVLEY LAFTSA+LDKYCSKWSA PKTGF+DITTS
Sbjct: 1076 PAAFYTMSKQAEAADLLYKANMNGGSVLEYTLAFTSASLDKYCSKWSAPPKTGFVDITTS 1135

Query: 1143 KDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVL 1202
            KDFYRIY GLQIGYLEE +   S  H+VLGDS+AWGGCTIIYLLGQQLHFELFDFSYQVL
Sbjct: 1136 KDFYRIYGGLQIGYLEEITAPQSAQHEVLGDSIAWGGCTIIYLLGQQLHFELFDFSYQVL 1195

Query: 1203 NVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQ 1262
            NV+EVE +S   + ++P   QGWE L+E MKKARRLNNHVFSMLKARCPLEDKTACAIKQ
Sbjct: 1196 NVSEVETVSASHTHRNPQIHQGWEGLLEGMKKARRLNNHVFSMLKARCPLEDKTACAIKQ 1255

Query: 1263 SGAPLHRIKFENTVSAFETLPQRGV 1287
            SGAPL R++FENTVSAFETLPQ+G 
Sbjct: 1256 SGAPLPRVRFENTVSAFETLPQKGT 1280

Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the ARP2/3 complex. Interacts with the active form of RHO-family GTPases.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q6UK63\|PIRA_DICDI Protein pirA OS=Dictyostelium discoideum GN=pirA PE=1 SV=1	Back alignment and function description

>sp\|Q90YM8\|CYFP1_DANRE Cytoplasmic FMR1-interacting protein 1 homolog OS=Danio rerio GN=cyfip1 PE=2 SV=1	Back alignment and function description

>sp\|Q5SQX6\|CYFP2_MOUSE Cytoplasmic FMR1-interacting protein 2 OS=Mus musculus GN=Cyfip2 PE=1 SV=2	Back alignment and function description

>sp\|Q6GQD1\|CYFP2_XENLA Cytoplasmic FMR1-interacting protein 2 OS=Xenopus laevis GN=cyfip2 PE=2 SV=1	Back alignment and function description

>sp\|Q5R414\|CYFP2_PONAB Cytoplasmic FMR1-interacting protein 2 OS=Pongo abelii GN=CYFIP2 PE=2 SV=1	Back alignment and function description

>sp\|Q7L576\|CYFP1_HUMAN Cytoplasmic FMR1-interacting protein 1 OS=Homo sapiens GN=CYFIP1 PE=1 SV=1	Back alignment and function description

>sp\|Q7TMB8\|CYFP1_MOUSE Cytoplasmic FMR1-interacting protein 1 OS=Mus musculus GN=Cyfip1 PE=1 SV=1	Back alignment and function description

>sp\|Q96F07\|CYFP2_HUMAN Cytoplasmic FMR1-interacting protein 2 OS=Homo sapiens GN=CYFIP2 PE=1 SV=2	Back alignment and function description

>sp\|Q299G2\|CYFIP_DROPS Cytoplasmic FMR1-interacting protein OS=Drosophila pseudoobscura pseudoobscura GN=Sra-1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1287
225430654		1677	PREDICTED: protein PIR-like [Vitis vinif	0.997	0.765	0.886	0.0
296085165		1300	unnamed protein product [Vitis vinifera]	0.998	0.988	0.874	0.0
356506020		1277	PREDICTED: protein PIR-like [Glycine max	0.989	0.996	0.882	0.0
356573167		1277	PREDICTED: protein PIR-like [Glycine max	0.989	0.996	0.881	0.0
186523916		1282	protein PIR [Arabidopsis thaliana] gi\|34	0.993	0.997	0.857	0.0
221272636		1277	121F-specific p53 inducible RNA [Lotus j	0.989	0.996	0.869	0.0
186523914		1283	protein PIR [Arabidopsis thaliana] gi\|55	0.993	0.996	0.855	0.0
297812017		1286	protein pir [Arabidopsis lyrata subsp. l	0.993	0.994	0.853	0.0
357512427		1334	121F-specific p53 inducible RNA [Medicag	0.985	0.950	0.834	0.0
449435856		1292	PREDICTED: LOW QUALITY PROTEIN: protein	0.993	0.989	0.849	0.0

>gi\|225430654\|ref\|XP_002268225.1\| PREDICTED: protein PIR-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 2358 bits (6110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1138/1284 (88%), Positives = 1214/1284 (94%)

Query: 3    AVPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKAL 62
            AVPVEEAIAALSTFSLED+QPEVQGP+V +STERGAT SPIEY+DV+AYRLSLSEDTKAL
Sbjct: 2    AVPVEEAIAALSTFSLEDDQPEVQGPAVWISTERGATQSPIEYTDVSAYRLSLSEDTKAL 61

Query: 63   NQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQ 122
            NQLN+LIQEGKEMASVLYTYRSCVKALPQLP+SMK SQADLYLETYQVLDLEMSRLREIQ
Sbjct: 62   NQLNSLIQEGKEMASVLYTYRSCVKALPQLPDSMKQSQADLYLETYQVLDLEMSRLREIQ 121

Query: 123  RWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFS 182
            RWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFS
Sbjct: 122  RWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFS 181

Query: 183  WYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVF 242
            WYKRTFTQVSV WQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVF
Sbjct: 182  WYKRTFTQVSVHWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVF 241

Query: 243  AVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKSDPVIP 302
            AVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFK+DPVIP
Sbjct: 242  AVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKNDPVIP 301

Query: 303  AFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIR 362
            AFPDLHLSPAAILKEL+MYFQKFS QTRLLTLP+PHELPPREAQDYQRHYLI NHIG IR
Sbjct: 302  AFPDLHLSPAAILKELAMYFQKFSTQTRLLTLPSPHELPPREAQDYQRHYLIINHIGAIR 361

Query: 363  AEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQC 422
            +EHDDFT+RFA ++NQLLLLKS+D+AD+EWCKEVKGNMYDMV+EGFQLLS+WTARIWEQC
Sbjct: 362  SEHDDFTVRFALSLNQLLLLKSSDSADVEWCKEVKGNMYDMVVEGFQLLSRWTARIWEQC 421

Query: 423  AWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSD 482
            AWKFSRP K +VP E+ EAS S+SDYEKVVRYNYSAEERK LVELVSYIK+IGSMM R D
Sbjct: 422  AWKFSRPCKVSVPMESYEASGSFSDYEKVVRYNYSAEERKGLVELVSYIKSIGSMMQRCD 481

Query: 483  TLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANNSRPEA 542
            TLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMAN SRPE+
Sbjct: 482  TLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANTSRPES 541

Query: 543  EQQSMHHVGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIP 602
            + Q + H GEESRG  F+PR VAPT+AQVHCLQFLIYEVVSGGNLRKPGGLFGN+GSEIP
Sbjct: 542  DLQPLQHGGEESRGTFFHPRPVAPTSAQVHCLQFLIYEVVSGGNLRKPGGLFGNSGSEIP 601

Query: 603  VNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWM 662
            VN+LKQLE+FFYKLSFFLH+LDYT TV+TLTDLGFLWFREFYLESSRVIQFPIECSLPWM
Sbjct: 602  VNDLKQLETFFYKLSFFLHVLDYTVTVATLTDLGFLWFREFYLESSRVIQFPIECSLPWM 661

Query: 663  LVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLC 722
            LVDHVL+SQNAGLLES++MPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVS+LC
Sbjct: 662  LVDHVLDSQNAGLLESILMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSKLC 721

Query: 723  ETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIA 782
            + IFTYYKSWAASELLDPSFLF+ DNGEKYS+QPMR +AL KMTRVKLLGR+I+LRSLIA
Sbjct: 722  DNIFTYYKSWAASELLDPSFLFALDNGEKYSIQPMRFTALLKMTRVKLLGRTIDLRSLIA 781

Query: 783  ERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQ 842
            ERMNKVFRENLEFLFDRFESQDLC IVELEKLLD+LKH HELLSKDL +D+F L+L+EMQ
Sbjct: 782  ERMNKVFRENLEFLFDRFESQDLCCIVELEKLLDVLKHAHELLSKDLLMDAFNLMLSEMQ 841

Query: 843  ENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSF 902
            ENISLVS+SSRLASQIW EM++DFLPNFILCNTTQRF+RSSKVP   VQ+PSVP AKP+F
Sbjct: 842  ENISLVSYSSRLASQIWMEMRNDFLPNFILCNTTQRFVRSSKVPSVPVQRPSVPSAKPNF 901

Query: 903  YCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPL 962
            YCGTQDLNSAHQ+FA+LHSGFFG+ HMFSIVRLLGSRSLPWLIRALLDH+SNKI TLEP+
Sbjct: 902  YCGTQDLNSAHQTFAQLHSGFFGMAHMFSIVRLLGSRSLPWLIRALLDHISNKIATLEPM 961

Query: 963  IMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGL 1022
            I GLQE LPKSIGLL FD GVTGCMRLV+E LNW +K ELK EVL GIKEIGSVLYWMGL
Sbjct: 962  ITGLQEALPKSIGLLPFDGGVTGCMRLVRENLNWASKPELKCEVLRGIKEIGSVLYWMGL 1021

Query: 1023 LDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPN 1082
            LDIVLRE+DTTHFMQTAPWLG +PG DGQI   QD GDSPVV LFKSATAAIVSNPGC +
Sbjct: 1022 LDIVLRELDTTHFMQTAPWLGLIPGVDGQILQGQDCGDSPVVTLFKSATAAIVSNPGCLD 1081

Query: 1083 PTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGFIDITTS 1142
            PTSFHT+SKQAEAADLL KANMNTGSVLEYALAFTSAALDKYCSKWSA PKTGF+DITTS
Sbjct: 1082 PTSFHTLSKQAEAADLLCKANMNTGSVLEYALAFTSAALDKYCSKWSAAPKTGFLDITTS 1141

Query: 1143 KDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVL 1202
            KDFYRI+SGLQIG+LEES Q P NNH++LGDSVAWGGCTIIYLLGQQLHFELFDFSYQVL
Sbjct: 1142 KDFYRIFSGLQIGHLEESVQLPPNNHEILGDSVAWGGCTIIYLLGQQLHFELFDFSYQVL 1201

Query: 1203 NVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQ 1262
            NVAEVE  ++ Q+ K+PH  QGWE L+EAMKKARRLNNHVFSMLKARCPLEDK ACAIKQ
Sbjct: 1202 NVAEVEVAALIQTHKNPHLAQGWECLLEAMKKARRLNNHVFSMLKARCPLEDKVACAIKQ 1261

Query: 1263 SGAPLHRIKFENTVSAFETLPQRG 1286
            SGAPLHRIKFENTVSAFETLPQ+G
Sbjct: 1262 SGAPLHRIKFENTVSAFETLPQKG 1285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296085165\|emb\|CBI28660.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356506020\|ref\|XP_003521786.1\| PREDICTED: protein PIR-like [Glycine max]	Back alignment and taxonomy information

>gi\|356573167\|ref\|XP_003554735.1\| PREDICTED: protein PIR-like [Glycine max]	Back alignment and taxonomy information

>gi|186523916|ref|NP_974801.2| protein PIR [Arabidopsis thaliana] gi|341941255|sp|Q5S2C3.2|PIR_ARATH RecName: Full=Protein PIR; AltName: Full=PIR of plants; AltName: Full=Protein KLUNKER; Short=AtSRA1; AltName: Full=Protein PIROGI gi|45861654|gb|AAS78644.1| ARP2/3 regulatory protein subunit PIRP [Arabidopsis thaliana] gi|50236403|gb|AAT71307.1| PIROGI [Arabidopsis thaliana] gi|51922059|tpg|DAA04564.1| TPA_exp: PIRP [Arabidopsis thaliana] gi|332005174|gb|AED92557.1| protein PIR [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|221272636\|emb\|CAQ17049.1\| 121F-specific p53 inducible RNA [Lotus japonicus] gi\|221272638\|emb\|CAQ17050.1\| 121F-specific p53 inducible RNA [Lotus japonicus]	Back alignment and taxonomy information

>gi\|186523914\|ref\|NP_197342.3\| protein PIR [Arabidopsis thaliana] gi\|55774576\|gb\|AAV64873.1\| PIR [Arabidopsis thaliana] gi\|332005173\|gb\|AED92556.1\| protein PIR [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297812017\|ref\|XP_002873892.1\| protein pir [Arabidopsis lyrata subsp. lyrata] gi\|297319729\|gb\|EFH50151.1\| protein pir [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357512427\|ref\|XP_003626502.1\| 121F-specific p53 inducible RNA [Medicago truncatula] gi\|355501517\|gb\|AES82720.1\| 121F-specific p53 inducible RNA [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449435856\|ref\|XP_004135710.1\| PREDICTED: LOW QUALITY PROTEIN: protein PIR-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1287
DICTYBASE\|DDB_G0287855		1336	pirA "component of SCAR regula	0.632	0.609	0.355	3.2e-175
UNIPROTKB\|F1PMM7		1310	CYFIP2 "Uncharacterized protei	0.668	0.656	0.318	1.1e-146
UNIPROTKB\|F1NE09		1256	CYFIP2 "Uncharacterized protei	0.668	0.684	0.317	1.4e-146
MGI\|MGI:1924134		1253	Cyfip2 "cytoplasmic FMR1 inter	0.668	0.686	0.318	2.3e-146
UNIPROTKB\|E7EVF4		1253	CYFIP2 "Cytoplasmic FMR1-inter	0.668	0.686	0.318	2.9e-146
UNIPROTKB\|Q5R414		1253	CYFIP2 "Cytoplasmic FMR1-inter	0.668	0.686	0.318	3.7e-146
ZFIN\|ZDB-GENE-080724-2		1253	cyfip2 "cytoplasmic FMR1 inter	0.668	0.686	0.314	2.3e-144
ZFIN\|ZDB-GENE-030131-8557		1257	cyfip1 "cytoplasmic FMR1 inter	0.928	0.950	0.296	3.6e-137
UNIPROTKB\|Q299G2		1291	Sra-1 "Cytoplasmic FMR1-intera	0.445	0.444	0.321	1.5e-126
FB\|FBgn0038320		1291	Sra-1 "specifically Rac1-assoc	0.445	0.444	0.323	3.2e-126

DICTYBASE\|DDB_G0287855 pirA "component of SCAR regulatory complex" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

 Score = 1300 (462.7 bits), Expect = 3.2e-175, Sum P(2) = 3.2e-175
 Identities = 309/868 (35%), Positives = 496/868 (57%)

Query:   403 MVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERK 462
             + + G ++LS WT+R+ +Q AWK+S+P  D  P+     SA++ DYE+VV++NY+ EER 
Sbjct:   397 ITLMGLRILSDWTSRVLQQSAWKYSKPNND--PT----ISATF-DYERVVKFNYTKEERT 449

Query:   463 ALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFR---KKKDL 519
             ALV+L++ IK++ S+M++S+TL+   L +TIH E+Q+FVQ  L   +++  +   KKKD 
Sbjct:   450 ALVQLIAMIKSLASLMMKSETLLQPILRKTIHQELQEFVQINLKETIKSFVKNNPKKKDN 509

Query:   520 SRI-LSDMRTLSADWMANNSRPEAEQQSMHHVGEESRGNIFYP-RAVAPTAAQVHCLQFL 577
              ++ +S ++ +S DW +     EA         EE    +  P RAV P+  Q+     L
Sbjct:   510 IKLEMSQLKNISVDWFSGFEPAEAVPNKKSKEVEEK---VQIPARAVPPSPTQLE----L 562

Query:   578 IYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGF 637
             I  +VS    +K          +   ++ +  E+F  K  F+ ++L  ++++ ++TDL  
Sbjct:   563 ILTLVSSLMDKK---------KDFSSDQYRDFEAFSSKAFFYRYLLSLSSSIISITDLAD 613

Query:   638 LWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVL 697
             LW+REFYLE +  +QFPIE SLPW+L DH+LES +  L+E +  P  +YND+AQ+AL+ L
Sbjct:   614 LWYREFYLELNNRVQFPIETSLPWILTDHILESDDPSLIEHLFYPLGLYNDTAQRALLSL 673

Query:   698 KQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSD----NGEKYS 753
              QRFLYDEIEAE++ CFD  + +L   ++T++K+ A+S LLD  +    +    NG+ ++
Sbjct:   674 NQRFLYDEIEAELNLCFDQLLYKLSGKVYTHFKTQASSILLDKPYKTQLELAHFNGKLHT 733

Query:   754 VQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEK 813
              +  R   L +   + LLGRSI+L  L+A+R N   R+NL++   RFE+ DL +IVELE 
Sbjct:   734 PKS-RFDVLLRQKHITLLGRSIDLCGLLAQRQNNTIRQNLDYAISRFEACDLTSIVELET 792

Query:   814 LLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILC 873
              +  +K TH+LLS+   ID F  I NE+ E+ SLVS+  R+   I  E+ +DF PN+   
Sbjct:   793 QIANIKLTHKLLSEYFDIDPFESIFNEINESTSLVSYHGRIVLHIIFELVADFAPNYTFN 852

Query:   874 NTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIV 933
             + TQRFI++       +++ ++P   P F  G + LN+A+ +   L+  F G+PH+ SI+
Sbjct:   853 SITQRFIKAPYTFTEELKRDALPKTNPVFLFGNKYLNAAYANSIELYKNFIGVPHIQSIL 912

Query:   934 RLLGSRSLPWLIRALLDHMSNKITT-LEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKE 992
             R++G ++LP ++  +L ++  KIT  L P +  L + +P S  L  +D G  G     + 
Sbjct:   913 RIVGKKNLPLIVAEVLRNIEIKITNVLSPYVSELLQGMPASTKLPIYDYGTEGGYGYFQL 972

Query:   993 QL-NWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGA--D 1049
             +L +     +L+ EVL   +E+G+ L +M LLD V+ + D+ +F + AP+LG  P    D
Sbjct:   973 KLKDIYIYPDLRPEVLQTFRELGNSLVFMNLLDQVITQTDSYNFAKAAPFLGITPETWKD 1032

Query:  1050 GQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPT-SFHTMSKQAEAADLLYKANMNTGS 1108
              + S       SP+ +  +     + S P     + S + M   A  AD  Y+ +    S
Sbjct:  1033 LEPSTEDPTLQSPLYSQLQKLAQLLESRPEVAKSSQSLNDMVANAWRADKFYRPSEQNFS 1092

Query:  1109 VLEYALAFTSAALDKYCSKWS-ATPKTGFIDITTSKDFYRIYSGLQIGYLEE-SSQSPSN 1166
             + +  L   S+ L+     WS A P  G I + +S +FYR++S LQ       S+++  +
Sbjct:  1093 LFKSVLQRFSSILNIVRHDWSGAPPDNGVICVDSSTEFYRLWSALQFVICWPLSNENDKS 1152

Query:  1167 NHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWE 1226
              H++ GD + W GC++I+ LGQQ  FELFDF Y +LNV E  A+   +S K P       
Sbjct:  1153 FHELFGDGLMWAGCSLIHFLGQQYRFELFDFCYHILNVEEAAAV---RSDK-P------- 1201

Query:  1227 ALIEAMKKA---RRLNNHVFSMLKARCP 1251
             AL    K A   + +NN +FS+L   CP
Sbjct:  1202 ALKNFFKNAQIIKDINNQIFSILNTYCP 1229

GO:0031209 "SCAR complex" evidence=IDA

GO:0030835 "negative regulation of actin filament depolymerization" evidence=IMP

GO:0006928 "cellular component movement" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0032433 "filopodium tip" evidence=IC

GO:0031252 "cell leading edge" evidence=IC

GO:0031143 "pseudopodium" evidence=IC

GO:0005911 "cell-cell junction" evidence=IC

GO:0005737 "cytoplasm" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB\|F1PMM7 CYFIP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NE09 CYFIP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1924134 Cyfip2 "cytoplasmic FMR1 interacting protein 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E7EVF4 CYFIP2 "Cytoplasmic FMR1-interacting protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5R414 CYFIP2 "Cytoplasmic FMR1-interacting protein 2" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-080724-2 cyfip2 "cytoplasmic FMR1 interacting protein 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-8557 cyfip1 "cytoplasmic FMR1 interacting protein 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q299G2 Sra-1 "Cytoplasmic FMR1-interacting protein" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]	Back alignment and assigned GO terms

FB\|FBgn0038320 Sra-1 "specifically Rac1-associated protein 1" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q90YM8	CYFP1_DANRE	No assigned EC number	0.3021	0.9199	0.9449	yes	no
Q5S2C3	PIR_ARATH	No assigned EC number	0.8575	0.9937	0.9976	yes	no
Q6UK63	PIRA_DICDI	No assigned EC number	0.3178	0.9261	0.8922	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PIR121	PIR121; transcription activator; distorted trichomes and exhibits a diffuse actin cytoskeleton ; Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the ARP2/3 complex. Interacts with the active form of RHO-family GTPases (1283 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	GRL	GRL (GNARLED); transcription activator; Component of the WAVE protein complex which act as acti [...] (1425 aa)	•	•	•	•	0.999
	ROP2	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2); GTP binding; Member of the Rho GTPase family. Functio [...] (195 aa)		•		•	0.999
	BRK1	BRK1 (BRICK1); Component of the WAVE protein complex which act as activators of ARP2/3 complex [...] (85 aa)		•	•	•	0.996
	SCAR2	SCAR2 (SCAR HOMOLOG 2); Encodes a subunit of the WAVE complex. The WAVE complex is required for [...] (1399 aa)	•		•	•	0.987
	WAVE2	WAVE2; Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex. [...] (1020 aa)	•		•	•	0.978
	ATSCAR4	ATSCAR4; Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) comple [...] (1170 aa)			•	•	0.977
	WAVE1	WAVE1; actin monomer binding; Encodes a member of the SCAR family.These proteins are part of a [...] (821 aa)			•	•	0.965
	ARAC5	ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5); GTP binding / GTPase; Belongs to the plant-specific ROP [...] (196 aa)		•		•	0.936
	ARAC3	ARAC3 (ARABIDOPSIS RAC-LIKE 3); GTP binding / GTPase; A member of ROP GTPase gene family; Encod [...] (198 aa)		•		•	0.932
	ARP2	ARP2 (ACTIN RELATED PROTEIN 2); protein binding / structural constituent of cytoskeleton; encod [...] (389 aa)				•	0.919

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1287
PLN03099		1232	PLN03099, PIR, Protein PIR; Provisional	0.0
pfam05994		815	pfam05994, FragX_IP, Cytoplasmic Fragile-X interac	1e-144

>gnl\|CDD\|215574 PLN03099, PIR, Protein PIR; Provisional	Back alignment and domain information

 Score = 2160 bits (5597), Expect = 0.0
 Identities = 943/1288 (73%), Positives = 1069/1288 (82%), Gaps = 62/1288 (4%)

Query: 3    AVPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKAL 62
            AVPVEEA+AALSTFSLEDEQP+VQG +V +S  R AT SPI+YSDV AY+LSLSEDTKA+
Sbjct: 2    AVPVEEAVAALSTFSLEDEQPDVQGLAVTLSAGRAATESPIDYSDVAAYQLSLSEDTKAI 61

Query: 63   NQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQ 122
            NQLNTLIQEGKEM S+LYTYRSCVKALPQLP SMKHSQADLYLETYQVLDLE+ RLREIQ
Sbjct: 62   NQLNTLIQEGKEMVSILYTYRSCVKALPQLPESMKHSQADLYLETYQVLDLEIGRLREIQ 121

Query: 123  RWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFS 182
            RWQ+SAASKLAADMQRFSRPERRINGPT+TH+WSMLKLLDVL+QLDHLKNAKASIPNDFS
Sbjct: 122  RWQSSAASKLAADMQRFSRPERRINGPTVTHMWSMLKLLDVLLQLDHLKNAKASIPNDFS 181

Query: 183  WYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVF 242
            WYKRTFTQVS QW DTD+MREELDDLQIFLSTRWAILLNL  EMFRVNNVEDILQVLIVF
Sbjct: 182  WYKRTFTQVSTQWPDTDTMREELDDLQIFLSTRWAILLNLQAEMFRVNNVEDILQVLIVF 241

Query: 243  AVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKSDPVIP 302
             +ESLE DF LL+ ERHILLRVLPVLVVLATSSEK+ ESL+KR+KINRLINIF       
Sbjct: 242  CLESLESDFVLLYSERHILLRVLPVLVVLATSSEKEGESLFKRIKINRLINIF------- 294

Query: 303  AFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIR 362
                                                          QR YLI NH+G IR
Sbjct: 295  ----------------------------------------------QREYLIVNHMGAIR 308

Query: 363  AEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQC 422
            AEHDDF IRFASAMNQL LLKS D  D  W +E+K NMYD+V+EGFQLLS+WT RIWEQC
Sbjct: 309  AEHDDFCIRFASAMNQLQLLKSADGVDTAWSREIKENMYDVVVEGFQLLSEWTGRIWEQC 368

Query: 423  AWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSD 482
            AWKFSRP KDA  +   E S S +DYEKVVR NY+AEERKALVEL+ YIK +GSM+ R D
Sbjct: 369  AWKFSRPAKDA--TPDPERSGSVTDYEKVVRCNYTAEERKALVELIGYIKGVGSMLERCD 426

Query: 483  TLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANNSRPEA 542
            TLVADALWETIHA+VQDFVQN LATMLRTTFRKKK+LSRILSDMRT++ADWMAN   PE 
Sbjct: 427  TLVADALWETIHAQVQDFVQNKLATMLRTTFRKKKELSRILSDMRTIAADWMANTR-PEE 485

Query: 543  EQQSMHHVGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIP 602
            +  S     +ESR N FYPR VAPTAAQ+HCLQFLI+E+VSGG+ +KPGG FGN GSEIP
Sbjct: 486  KMPSRQRENDESRPNFFYPRPVAPTAAQLHCLQFLIHELVSGGSPKKPGGFFGNNGSEIP 545

Query: 603  VNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWM 662
            VN+LKQLE+FF KL+FF HILDY AT+  LTDLGFLWFREFYLE+SRVIQFPIECSLPWM
Sbjct: 546  VNDLKQLETFFNKLAFFPHILDYRATIGHLTDLGFLWFREFYLETSRVIQFPIECSLPWM 605

Query: 663  LVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLC 722
            LVD++LESQ+AGLLESV++PFDIYNDSAQ AL VLKQRFLYDEIEAEVD CFD  VS+L 
Sbjct: 606  LVDYILESQDAGLLESVLLPFDIYNDSAQHALRVLKQRFLYDEIEAEVDLCFDQLVSKLS 665

Query: 723  ETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIA 782
            E+IFTYYKS AAS+LLDPSFL + DNGEK+SVQP R  ALFKM RVK+LGR+I+L SLIA
Sbjct: 666  ESIFTYYKSRAASKLLDPSFLAAVDNGEKFSVQPKRYDALFKMRRVKILGRTIDLASLIA 725

Query: 783  ERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQ 842
            +RMNK+FRENL+FLF+RFESQDLC++VEL++L++IL+ THELLS+ LSID F L+L EMQ
Sbjct: 726  QRMNKIFRENLDFLFERFESQDLCSVVELQRLVEILRLTHELLSEHLSIDPFSLMLGEMQ 785

Query: 843  ENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSF 902
            ENISLVSFSSRLASQIWSEMQ+DFLPNFILCNTTQRF+RSSKVP    ++PSVP AKPSF
Sbjct: 786  ENISLVSFSSRLASQIWSEMQNDFLPNFILCNTTQRFVRSSKVPQRPTRRPSVPSAKPSF 845

Query: 903  YCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPL 962
             CGTQDLN AHQSFA LHS FFG+PHMF+IV+LLGSRSLPWLIRALLDH+S KITTLEP+
Sbjct: 846  LCGTQDLNMAHQSFAELHSKFFGLPHMFAIVKLLGSRSLPWLIRALLDHLSQKITTLEPM 905

Query: 963  IMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGL 1022
            I  L+E +PK+IGL  FD GV GCM++ +EQL WGTK E K+EVL G+KEIGS+++WM L
Sbjct: 906  IEDLREAMPKAIGLPSFDGGVAGCMKIFREQLQWGTKYEGKSEVLRGLKEIGSLIFWMSL 965

Query: 1023 LDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPN 1082
            LDI +REV+T  FMQ APWLG +PG +GQ+    D  +SP+V+LFK AT+A+VS+PGC N
Sbjct: 966  LDIAMREVETVQFMQVAPWLGLVPGKEGQLQ-QADDNESPLVSLFKEATSAVVSSPGCLN 1024

Query: 1083 PTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGFIDITTS 1142
            P++F +MSKQAE ADLLYK+N+NTGSVLEY LAFTSA LD++ SKWSA PKTGFIDITTS
Sbjct: 1025 PSAFVSMSKQAEVADLLYKSNLNTGSVLEYTLAFTSAVLDRHRSKWSAPPKTGFIDITTS 1084

Query: 1143 KDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVL 1202
            KDFYRIYSGLQ  YLEE S   S  H+ LGDSVAWGGCTI+YLLGQQL FEL DF Y VL
Sbjct: 1085 KDFYRIYSGLQYVYLEEISAEGSAFHERLGDSVAWGGCTIVYLLGQQLRFELLDFIYHVL 1144

Query: 1203 NVAEVEAISVPQSQ-----KHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTA 1257
            +V+EVE+ S   +      K P + QGWE  +E  +KARRLNNHVFS+L+ARCPLEDK A
Sbjct: 1145 SVSEVESASASHTHRNERLKSPSYHQGWEGFLENARKARRLNNHVFSLLRARCPLEDKLA 1204

Query: 1258 CAIKQSGAPLHRIKFENTVSAFETLPQR 1285
              IKQSGAP+HR+K+ NT SAFETLPQ+
Sbjct: 1205 SMIKQSGAPVHRVKYPNTPSAFETLPQK 1232

Length = 1232

>gnl\|CDD\|218846 pfam05994, FragX_IP, Cytoplasmic Fragile-X interacting family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1287
PLN03099		1232	PIR Protein PIR; Provisional	100.0
KOG3534		1253	consensus p53 inducible protein PIR121 [General fu	100.0
PF05994		820	FragX_IP: Cytoplasmic Fragile-X interacting family	100.0
PF07159		303	DUF1394: Protein of unknown function (DUF1394); In	100.0
KOG3951		321	consensus Uncharacterized conserved protein [Funct	100.0
PF14745		567	WASH-7_N: WASH complex subunit 7, N-terminal	98.76
PF09735		1116	Nckap1: Membrane-associated apoptosis protein; Int	97.99
PF14744		350	WASH-7_mid: WASH complex subunit 7	90.0

>PLN03099 PIR Protein PIR; Provisional	Back alignment and domain information

Probab=100.00  E-value=0  Score=3505.17  Aligned_cols=1226  Identities=77%  Similarity=1.203  Sum_probs=1193.9

Q ss_pred             ccCHHHHHhhcccCCCCCCCccccCCcceEeeccCCCCCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000783            3 AVPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTY   82 (1287)
Q Consensus         3 ~v~~~~av~~L~~~~l~d~qP~ie~~~~~l~y~~~~~~~~tnf~Dr~a~~t~~~eE~e~~~~ln~vLeeg~~~l~~LytY   82 (1287)
                      |||++|||++|++||||||||||||+|++|.-+|+++||||||+||+||+||++||++++++||++|+||++++++||||
T Consensus         2 ~~~~~~av~~L~~~~l~d~QP~Ie~~~~~i~~~~y~~~~~tnf~D~~Ay~~~~aEea~~~~~ln~ll~eG~e~a~~LYT~   81 (1232)
T PLN03099          2 AVPVEEAVAALSTFSLEDEQPDVQGLAVTLSAGRAATESPIDYSDVAAYQLSLSEDTKAINQLNTLIQEGKEMVSILYTY   81 (1232)
T ss_pred             CCcHHHHHHHHhcCCCCCCCccccCCCcceecccccccCCCcccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            79999999999999999999999999999995555789999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCchHHHHHHHHHHH
Q 000783           83 RSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLD  162 (1287)
Q Consensus        83 RscsraIpqaisn~qpn~~eiye~t~~vL~PeV~KLk~F~~Fs~~a~~~l~~~l~~l~h~E~~q~~~se~~L~~La~iLd  162 (1287)
                      |||||||||+++|+|||++||||+|++||+|||+||++||+||++|+.+||++|++|||+|||+++|+|+||++|+++||
T Consensus        82 RsCsrAlPq~k~~~q~nr~eiYe~t~eVLepEi~KL~~fm~fq~~Ai~~f~~e~krl~~~Ekrk~f~Sea~l~tl~k~ln  161 (1232)
T PLN03099         82 RSCVKALPQLPESMKHSQADLYLETYQVLDLEIGRLREIQRWQSSAASKLAADMQRFSRPERRINGPTVTHMWSMLKLLD  161 (1232)
T ss_pred             HHHHhhcCCCCccccccHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhhhccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccCCCCCcchhHHhhhHhhhhhccCCchhHHHHhhhcchhccchhhHHHHHHHhhcccCChHhHHHHHHHH
Q 000783          163 VLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIVF  242 (1287)
Q Consensus       163 f~l~lD~LK~~k~sIqNDFS~YRRa~sr~~~~~~d~~~v~~E~~~LSlFlA~~~pil~~L~~al~~i~~~edvL~t~anv  242 (1287)
                      |+++||+|||||+||+||||+|||||.++.++|+|++++++|+++|||||||+|.|+.+|++++..|+||||+|++++|+
T Consensus       162 mfa~LD~LKNmKAsi~NDfS~ykRAf~qfl~~~~d~~~~~e~~q~Ls~FLatqn~I~~~Lk~~l~~i~gyediL~~ivn~  241 (1232)
T PLN03099        162 VLLQLDHLKNAKASIPNDFSWYKRTFTQVSTQWPDTDTMREELDDLQIFLSTRWAILLNLQAEMFRVNNVEDILQVLIVF  241 (1232)
T ss_pred             HHHHHHHHhhhhccccccHHHHHHHHHHHHHhcCCchhHHHHHhhHHHHhcchHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            99999999999999999999999999888888999999997789999999999999999999999999999999999999


Q ss_pred             HHHhhhcccccCCccchhhheeeceeeeeecCCCCchhhHHhHhchhHHHhhhhcCCccccCCCcccCHHHHHhhhchhh
Q 000783          243 AVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYF  322 (1287)
Q Consensus       243 C~~mlE~~~y~~p~ek~~lLRVM~~~iiL~D~v~~~~~ni~Kri~l~r~~kifK~~pVVPlfgDm~i~~~~~~k~~~~~~  322 (1287)
                      |++|+|+++|++|+|||+|||||+|+++|+|++++++...+|||||+|++|||                           
T Consensus       242 C~~~yE~~~yl~p~EKH~LlrVm~f~l~L~ds~~k~~~~~~Kri~i~rldkiF---------------------------  294 (1232)
T PLN03099        242 CLESLESDFVLLYSERHILLRVLPVLVVLATSSEKEGESLFKRIKINRLINIF---------------------------  294 (1232)
T ss_pred             HHHHhccCceecCccceeEEEeeeeeEEEecccccchHHHhhhccHHHHHHHh---------------------------
Confidence            99999999999999999999999999999998777766678999999999998                           


Q ss_pred             hhhhhhcccccCCCCCCCCcchhhcccchhHHhhhhhhHHhhHHHHHHHHHHHhhHHHHhhcCCCcchhhhHhhhhhhHH
Q 000783          323 QKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYD  402 (1287)
Q Consensus       323 ~~~~~~~~~~~~p~~~~~~~~e~~~~~~~~~i~~~l~~ir~~~~~~~~~la~~~n~~~~~~~~~~~~~~~~~~~~~~~~~  402 (1287)
                                                ++||+|++||++||+||++|++|||+++|+++++++.+++|.++++.+++++|+
T Consensus       295 --------------------------~~~y~I~~~m~~iR~dh~~f~~~~A~~~N~~~~~~~~~~~d~e~~~~~k~~~~d  348 (1232)
T PLN03099        295 --------------------------QREYLIVNHMGAIRAEHDDFCIRFASAMNQLQLLKSADGVDTAWSREIKENMYD  348 (1232)
T ss_pred             --------------------------cchHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhcCCccchhhhhhhhHHHHH
Confidence                                      247899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhHHHHHHHhhhhcccCCCCCCCCCCcccCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000783          403 MVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSD  482 (1287)
Q Consensus       403 l~l~GlqlLs~Wt~~V~Eq~aWKl~hP~~~~~~~~~~~~p~~~~~YEravRyNYs~~E~~alveiIamIK~l~~lL~~~e  482 (1287)
                      +||+||||||+||++|||||||||+||++++.  .|++||+++++||||||||||+|||+||||+||||||++++|.++|
T Consensus       349 ~~l~GlqLLS~WT~~V~Eq~aWKl~~P~~~~~--~n~e~p~~~eeYEravRyNYt~eEr~aLvelIsmIK~l~~ll~~~e  426 (1232)
T PLN03099        349 VVVEGFQLLSEWTGRIWEQCAWKFSRPAKDAT--PDPERSGSVTDYEKVVRCNYTAEERKALVELIGYIKGVGSMLERCD  426 (1232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCccccc--cCCCCCCchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999996555  5789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhcCCCCCchhhhhccccCCCCCCccccCC
Q 000783          483 TLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANNSRPEAEQQSMHHVGEESRGNIFYPR  562 (1287)
Q Consensus       483 ~~l~~~i~~~I~~~~Q~Fvq~~L~~~L~~a~KkKk~~~~il~~iR~~~~DW~~g~~~~~~~~~~~~k~~~~~~~~~~~~r  562 (1287)
                      ++++++||++||+++|||||++|++|||+++||||++++||++||++++||++|.+|.++++.++ ++++...+++++||
T Consensus       427 t~i~~ai~~~I~~~lQdFvQ~~L~~~Lr~~~kkKk~l~~il~~iR~~~~DW~~g~~p~~~~~~~~-~~~~~~~~~~i~pr  505 (1232)
T PLN03099        427 TLVADALWETIHAQVQDFVQNKLATMLRTTFRKKKELSRILSDMRTIAADWMANTRPEEKMPSRQ-RENDESRPNFFYPR  505 (1232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhccCCCcccchhhcC-CCCCCCCCcccCcC
Confidence            99999999999999999999999999999999999999999999999999999998888876443 33344567889999


Q ss_pred             CCCCChhHHHHHHHHHHhhhcCCCccccCCccCCCCCCCCchhHHHHHHHHHhhhhhHhhhChHHHHHhhccccchhhhh
Q 000783          563 AVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFRE  642 (1287)
Q Consensus       563 ~v~Ps~tQL~ml~~li~~~~s~~~~~k~~g~f~~~r~~l~~~~~~~i~~F~~~s~~~~~LLn~s~tL~~~~DLS~LWfRE  642 (1287)
                      +||||+|||||+|+||+++++||+.+|++|+||.++++++++++++|++||++|+||+|||||++||++|||||||||||
T Consensus       506 ~v~psstQL~~lr~~l~slis~~s~kk~~g~F~~s~~~i~~~~i~~ie~Fl~~S~~f~~LL~~s~tL~~~~Dls~LWFRE  585 (1232)
T PLN03099        506 PVAPTAAQLHCLQFLIHELVSGGSPKKPGGFFGNNGSEIPVNDLKQLETFFNKLAFFPHILDYRATIGHLTDLGFLWFRE  585 (1232)
T ss_pred             CCCCcHHHHHHHHHHHHHHhCCCCcccccccccccccCCChHHHHHHHHHHHHhhhHHHHhchHHHHHHhhhhHHHHHHH
Confidence            99999999999999999999998888889999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCeeeccCcCcchHHHHHHHhhcCCcchhhhhcccccccchHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHHHHH
Q 000783          643 FYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLC  722 (1287)
Q Consensus       643 fyLEl~~~iQFPIe~SLPWILtdhiL~s~~~~l~E~ilyPLdLYNDAA~~AL~~lk~qfLYDEIEAEvnLCFDqlv~kLS  722 (1287)
                      ||||++++||||||||||||||||||++++|+|+|+||||||||||||++||++||||||||||||||||||||||||||
T Consensus       586 fyLE~~~~iQFPIe~SLPwIL~dhiL~~~~~~L~E~IfyPLdiYNDAA~~AL~~lk~qfLYDEIEAEv~LCfDqlv~kls  665 (1232)
T PLN03099        586 FYLETSRVIQFPIECSLPWMLVDYILESQDAGLLESVLLPFDIYNDSAQHALRVLKQRFLYDEIEAEVDLCFDQLVSKLS  665 (1232)
T ss_pred             HHHhhcceeecchhcCccHHHHHHHHcCCChhhhhhhhcchhhhhhHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhccCccccccccCCCCcccCChhHHHHhhcccceecccccchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 000783          723 ETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFES  802 (1287)
Q Consensus       723 d~iF~~yK~~Aas~lLd~~f~~~~~~~~~~~~~~~Ry~~LL~QrhvqLLGRsIDL~~LItQRln~~~~~~l~~ai~rfEs  802 (1287)
                      |+||+|||++|+|++||++|+++|++|.++++||+||++|||||||+||||+||||+||+||||++|+++||.||+||||
T Consensus       666 d~iF~~yK~~A~s~~Ld~~f~~~~~~~~~~~~~p~Ry~~LlqQr~v~lLGr~IDL~~LItQRlN~~~~~~Le~~i~rfEs  745 (1232)
T PLN03099        666 ESIFTYYKSRAASKLLDPSFLAAVDNGEKFSVQPKRYDALFKMRRVKILGRTIDLASLIAQRMNKIFRENLDFLFERFES  745 (1232)
T ss_pred             HHHHHHHHHHHHHHhhCHHHHhhhhccccCCCChHHHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccccccccccCcccccC
Q 000783          803 QDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRS  882 (1287)
Q Consensus       803 ~dl~~iveLe~ll~v~R~TH~LLse~L~LdpF~~ml~Ean~~~s~~s~~gRIt~hv~~eL~~D~~pNy~yn~~t~RFvrs  882 (1287)
                      +|||+||||+++|||||+||+||||+|+|||||+||+||||++|++|++||||+||||||++||+||||||++||||||+
T Consensus       746 ~dL~~ivele~ll~ilr~TH~LLse~L~LdpFd~m~~Ean~~~s~~S~~sri~~hv~~el~~Df~PNy~~n~~T~RFVrs  825 (1232)
T PLN03099        746 QDLCSVVELQRLVEILRLTHELLSEHLSIDPFSLMLGEMQENISLVSFSSRLASQIWSEMQNDFLPNFILCNTTQRFVRS  825 (1232)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHhccCCccchhhHHHHHHHHHHhccccccceecCccchhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCcceecchhhHHHHHHHHhhcCCCCCchhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhHHH
Q 000783          883 SKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPL  962 (1287)
Q Consensus       883 ~~~~~~~~~r~~~P~~~~~~l~Gsk~Ln~A~~~i~~l~~~FvG~pH~~ai~rLLg~~gia~vi~ell~~~~~~i~~~~~~  962 (1287)
                      +.+++++++|+++|+++|+|+||||+||+||++|+++|++|||.|||+|||||||||||||||+||||+++++|+++.||
T Consensus       826 ~~~~~~~~~Re~~P~~~~~~~~Gtk~Ln~A~~~~~~ly~~f~G~pH~~ai~rLlG~~~la~vi~~lL~~i~~~i~~l~~~  905 (1232)
T PLN03099        826 SKVPQRPTRRPSVPSAKPSFLCGTQDLNMAHQSFAELHSKFFGLPHMFAIVKLLGSRSLPWLIRALLDHLSQKITTLEPM  905 (1232)
T ss_pred             ccCcccccccCCCCCCCcceeecchHHHHHHHHHHHHHhcccCcHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCcccCccCCCccchhHHHHHHHHhccccccchHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhHHHHhhcccc
Q 000783          963 IMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWL 1042 (1287)
Q Consensus       963 v~~l~~~mP~~~~lp~~dyG~~g~~~~~~~~l~~~~~~dlk~~v~~~frElGN~i~~~~lle~aL~q~e~~d~~~aaPf~ 1042 (1287)
                      |++|+++|||+|+||++|||++||++||++||+|++.||||+||||+||||||+|+||+|||+||+|+|++||+|||||+
T Consensus       906 v~~L~~~mPk~~~Lp~~dyG~~g~~~~~~~qL~~~~~yelk~ev~q~fREiGn~i~f~~Lld~aL~qee~~~~~~aAPfl  985 (1232)
T PLN03099        906 IEDLREAMPKAIGLPSFDGGVAGCMKIFREQLQWGTKYEGKSEVLRGLKEIGSLIFWMSLLDIAMREVETVQFMQVAPWL  985 (1232)
T ss_pred             HHHHHHhCccccCCCccccCchHHHHHHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999855999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccCCCCCCchhhhhhHHHHhhhcCCCCCCCchhhhhhHhhhHHhhhhhhccccccHHHHHHHHHHHHHc
Q 000783         1043 GFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALD 1122 (1287)
Q Consensus      1043 gi~P~~~~~~~~~~~~~~~~~~~l~~~a~~~v~~~~~~~~~~~~~~~~~~a~~~d~l~~~~l~~gs~f~~~L~~~~~~L~ 1122 (1287)
                      |++|+++||. ++++++|+|++++++++..+|+++|||++|.+|.+|.+||.+||+|||+||||||+||++|+|++++|+
T Consensus       986 gi~P~~~gq~-~~~~~~ys~~~~~~~~~~~~~v~~~~~~~~~~~~~~~kq~~~adlL~kerl~~GSvfe~~L~~~~~~L~ 1064 (1232)
T PLN03099        986 GLVPGKEGQL-QQADDNESPLVSLFKEATSAVVSSPGCLNPSAFVSMSKQAEVADLLYKSNLNTGSVLEYTLAFTSAVLD 1064 (1232)
T ss_pred             cCCCCCchhh-hhhhcccchHHHHHHHHhhhhhcCcccCCchhhcchhhhhhhhhHHHHhhcccccHHHHHHHHHHHHHh
Confidence            9999998876 679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccccCCCCCeeeecccchHhhhhhhhhceecccCCCCCCCcccccCCcccchHHHHHHHhccccccccccchhhhh
Q 000783         1123 KYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVL 1202 (1287)
Q Consensus      1123 ~~~~~W~g~p~ngv~~id~~~ef~RlwSalqf~~c~p~~~~e~~~~e~fGdgl~waGc~ii~LLgQq~rFe~lDF~yhil 1202 (1287)
                      ++|++|++||+||||+||||+||||||||||||||+|++++|+++||+|||||+|||||||+|||||+|||+||||||||
T Consensus      1065 ~~~~~W~~~P~nGvi~Id~~~eFhRlwSalQfv~c~p~~~~e~~~ee~fGDgl~WaGctii~lLgQq~rFe~lDF~yhiL 1144 (1232)
T PLN03099       1065 RHRSKWSAPPKTGFIDITTSKDFYRIYSGLQYVYLEEISAEGSAFHERLGDSVAWGGCTIVYLLGQQLRFELLDFIYHVL 1144 (1232)
T ss_pred             cccCcccCCCCCCeEecccchHHHHHHHhhhheeeccCCCCcccHHHHhccccccccchHHhhhcchhhhhHHHHHHHHH
Confidence            99999999899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccCC-----CCCCCCCCCcCHHHHHHHHHHHHHHhHHHHHHHhhcCCCCcchhhhhccCCCCcccccCCCchh
Q 000783         1203 NVAEVEAISVP-----QSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIKFENTVS 1277 (1287)
Q Consensus      1203 ~v~~~d~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~ln~~iF~~L~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~s 1277 (1287)
                      ||+++|++|+.     ++.++|+.|++|++||+||||||+|||||||+|++|||++|+.||+|||||+||||||||||||
T Consensus      1145 ~V~e~d~~~~~~~~~~~~~k~~~~~~~l~~~~e~~rr~r~LNnqVFs~L~~~~~~~d~~~~~~k~~g~~~~~~~~~~t~s 1224 (1232)
T PLN03099       1145 SVSEVESASASHTHRNERLKSPSYHQGWEGFLENARKARRLNNHVFSLLRARCPLEDKLASMIKQSGAPVHRVKYPNTPS 1224 (1232)
T ss_pred             HHHHHhcccchhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccccccCCCcceeeecCCChH
Confidence            99999999983     4556689999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCC
Q 000783         1278 AFETLPQR 1285 (1287)
Q Consensus      1278 ~~~~~~~~ 1285 (1287)
                      +|+||||+
T Consensus      1225 ~~~~lp~~ 1232 (1232)
T PLN03099       1225 AFETLPQK 1232 (1232)
T ss_pred             HHhccCCC
Confidence            99999986

>KOG3534 consensus p53 inducible protein PIR121 [General function prediction only]	Back alignment and domain information

>PF05994 FragX_IP: Cytoplasmic Fragile-X interacting family; InterPro: IPR008081 Cytoplasmic fragile X mental retardation protein (FMRP) interacting protein belongs to a highly conserved but, as yet, functionally uncharacterised family	Back alignment and domain information

>PF07159 DUF1394: Protein of unknown function (DUF1394); InterPro: IPR009828 This family consists of several hypothetical eukaryotic proteins of around 320 residues in length	Back alignment and domain information

>KOG3951 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14745 WASH-7_N: WASH complex subunit 7, N-terminal	Back alignment and domain information

>PF09735 Nckap1: Membrane-associated apoptosis protein; InterPro: IPR019137 Nck-associated protein 1 is part of lamellipodial complex that controls Rac-dependent actin remodeling	Back alignment and domain information

>PF14744 WASH-7_mid: WASH complex subunit 7	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1287
3p8c_A		1253	Structure And Control Of The Actin Regulatory Wave		1e-146

>pdb|3P8C|A Chain A, Structure And Control Of The Actin Regulatory Wave Complex Length = 1253

Back alignment and structure

Iteration: 1

Score = 515 bits (1326), Expect = e-146, Method: Compositional matrix adjust. Identities = 378/1299 (29%), Positives = 631/1299 (48%), Gaps = 90/1299 (6%) Query: 2 AAVPVEEAIAA---LSTFSLEDEQPEVQGP-SVLVSTERGATASPIEYSDVNAYRLSLS- 56 A V +E+A++ L L D+QP ++ P S L+ T + D NA+ ++ Sbjct: 3 AQVTLEDALSNVDLLEELPLPDQQPCIEPPPSSLLYQPNFNT----NFEDRNAFVTGIAR 58 Query: 57 --EDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLE 114 E + +N +++EG+E A +LYT+RSC +A+PQ+ + + ++ ++Y +T +VL+ E Sbjct: 59 YIEQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPE 118 Query: 115 MSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAK 174 +++L +Q +A + +++R ERR + + +L ++ K +++ LD LKN K Sbjct: 119 VTKLMNFMYFQRNAIERFCGEVRRLCHAERRKDFVSEAYLITLGKFINMFAVLDELKNMK 178 Query: 175 ASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVED 234 S+ ND S YKR Q + D S++E +L +FL+ I +L ++ ++ E+ Sbjct: 179 CSVKNDHSAYKRA-AQFLRKMADPQSIQES-QNLSMFLANHNKITQSLQQQLEVISGYEE 236 Query: 235 ILQVLIVFAVESLELDFALLFPERHIXXXXXXXXXXXATSSEKDSESL--YKRVKINRLI 292 +L ++ V+ E L E+H+ S + L KR+ ++++ Sbjct: 237 LLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLMDGSVSNIYKLDAKKRINLSKID 296 Query: 293 NIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHY 352 FK V+P F D+ + A +K + Y + S T + +P Y Sbjct: 297 KYFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWTCTSSGSSPQ-------------Y 343 Query: 353 LIANHIGGIRAEHDDFTIRFASAMNQLLLLKS----TDNADIEWCKEVKGNMYDMVIEGF 408 I + IR +H F A N ++ S D E+ K ++D+ ++G Sbjct: 344 NICEQMIQIREDHMRFISELARYSNSEVVTGSGRQEAQKTDAEYRK-----LFDLALQGL 398 Query: 409 QLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELV 468 QLLS+W+A + E +WK P + S +YE+ RYNY++EE+ ALVE++ Sbjct: 399 QLLSQWSAHVMEVYSWKLVHPTDKY---SNKDCPDSAEEYERATRYNYTSEEKFALVEVI 455 Query: 469 SYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKD-LSRILSDMR 527 + IK + +M R +++ A+ T++A +QDF Q TL LR +KKK+ + +L +R Sbjct: 456 AMIKGLQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPLRQAIKKKKNVIQSVLQAIR 515 Query: 528 TLSADWMANNSRPEAEQQSMHHVGEESRGNIFYPR-AVAPTAAQVHCLQFLIYEVVSGGN 586 DW + P + +S +I PR AV P++ Q++ ++ ++ +++ + Sbjct: 516 KTVCDWETGHE-PFNDPALRGEKDPKSGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKS 574 Query: 587 LRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLE 646 K G I E ESFFY H+++++ T+ DL LWFREF+LE Sbjct: 575 GSKKTLRSSLEGPTILDIEKFHRESFFYT-----HLINFSETLQQCCDLSQLWFREFFLE 629 Query: 647 SS--RVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYD 704 + R IQFPIE S+PW+L DH+LE++ A ++E V+ D+YNDSA AL ++FLYD Sbjct: 630 LTMGRRIQFPIEMSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYD 689 Query: 705 EIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDN-GEKYSVQPM-RLSAL 762 EIEAEV+ CFD FV +L + IF YYK A S LLD N G + P R L Sbjct: 690 EIEAEVNLCFDQFVYKLADQIFAYYKVMAGSLLLDKRLRSECKNQGATIHLPPSNRYETL 749 Query: 763 FKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTH 822 K V+LLGRSI+L LI +R++ ++LE RFES+DL +IVEL+ LL+I + TH Sbjct: 750 LKQRHVQLLGRSIDLNRLITQRVSAAMYKSLELAIGRFESEDLTSIVELDGLLEINRMTH 809 Query: 823 ELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRS 882 +LLS+ L++D F + E N+S + R+ ++ E+ DFLPN+ +T RF+R+ Sbjct: 810 KLLSRYLTLDGFDAMFREANHNVS--APYGRITLHVFWELNYDFLPNYCYNGSTNRFVRT 867 Query: 883 SKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLP 942 Q+ P A+P + G++ LN A+ S + F G PH I RLLG + + Sbjct: 868 VLPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIA 927 Query: 943 WLIRALLDHMSNKIT-TLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQL-NWGTKS 1000 ++ LL + + + T+ + L E +PK L + G G + QL + + Sbjct: 928 VVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYA 987 Query: 1001 ELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGD 1060 ELK ++E+G+ + + L++ L + + AP+ LP + D Sbjct: 988 ELKTVCFQNLREVGNAILFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKM 1047 Query: 1061 SPVVNLFKS-ATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTG-SVLEYALAFTS 1118 + + + ++ G P + A DLL K + G S+ E L Sbjct: 1048 KRLESKYAPLHLVPLIERLGTPQQIAI------AREGDLLTKERLCCGLSMFEVILTRIR 1101 Query: 1119 AALDKYCSKWSAT-PKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAW 1177 + LD W P G + + +F+R++S +Q Y + GD + W Sbjct: 1102 SFLDD--PIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHW 1159 Query: 1178 GGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQ-----GWEALIEAM 1232 GC II LLGQQ F + DF Y +L V QKH + + ++E + Sbjct: 1160 AGCMIIVLLGQQRRFAVLDFCYHLLKV-----------QKHDGKDEIIKNVPLKKMVERI 1208 Query: 1233 KKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIK 1271 +K + LN+ + ++L DK + G P+ ++ Sbjct: 1209 RKFQILNDEIITIL-------DKYLKSGDGEGTPVEHVR 1240

PyMOL of 3p8c

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1287
3p8c_A		1253	Cytoplasmic FMR1-interacting protein 1; actin poly	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens} Length = 1253	Back alignment and structure

 Score = 1142 bits (2954), Expect = 0.0
 Identities = 364/1287 (28%), Positives = 623/1287 (48%), Gaps = 64/1287 (4%)

Query: 2    AAVPVEEAIA---ALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLS-- 56
            A V +E+A++    L    L D+QP ++ P   +  +         + D NA+   ++  
Sbjct: 3    AQVTLEDALSNVDLLEELPLPDQQPCIEPPPSSLLYQ---PNFNTNFEDRNAFVTGIARY 59

Query: 57   -EDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEM 115
             E     + +N +++EG+E A +LYT+RSC +A+PQ+  + + ++ ++Y +T +VL+ E+
Sbjct: 60   IEQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEV 119

Query: 116  SRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKA 175
            ++L     +Q +A  +   +++R    ERR +  +  +L ++ K +++   LD LKN K 
Sbjct: 120  TKLMNFMYFQRNAIERFCGEVRRLCHAERRKDFVSEAYLITLGKFINMFAVLDELKNMKC 179

Query: 176  SIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDI 235
            S+ ND S YKR   Q   +  D  S++E   +L +FL+    I  +L  ++  ++  E++
Sbjct: 180  SVKNDHSAYKRAA-QFLRKMADPQSIQES-QNLSMFLANHNKITQSLQQQLEVISGYEEL 237

Query: 236  LQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLY--KRVKINRLIN 293
            L  ++   V+  E    L   E+H+LL+V+   + L   S  +   L   KR+ ++++  
Sbjct: 238  LADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLMDGSVSNIYKLDAKKRINLSKIDK 297

Query: 294  IFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYL 353
             FK   V+P F D+ +  A  +K  + Y +  S  T   +  +P              Y 
Sbjct: 298  YFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWTCTSSGSSPQ-------------YN 344

Query: 354  IANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSK 413
            I   +  IR +H  F    A   N  ++  S      +   E +  ++D+ ++G QLLS+
Sbjct: 345  ICEQMIQIREDHMRFISELARYSNSEVVTGSGRQEAQKTDAEYR-KLFDLALQGLQLLSQ 403

Query: 414  WTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKN 473
            W+A + E  +WK   P          +   S  +YE+  RYNY++EE+ ALVE+++ IK 
Sbjct: 404  WSAHVMEVYSWKLVHPTD---KYSNKDCPDSAEEYERATRYNYTSEEKFALVEVIAMIKG 460

Query: 474  IGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKD-LSRILSDMRTLSAD 532
            +  +M R +++   A+  T++A +QDF Q TL   LR   +KKK+ +  +L  +R    D
Sbjct: 461  LQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPLRQAIKKKKNVIQSVLQAIRKTVCD 520

Query: 533  WMANNSRPEAEQQSMHHVGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGG 592
            W   +              +         RAV P++ Q++ ++ ++  +++  +     G
Sbjct: 521  WETGHEPFNDPALRGEKDPKSGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKS-----G 575

Query: 593  LFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESS--RV 650
                  S +    +  +E F  +  F+ H+++++ T+    DL  LWFREF+LE +  R 
Sbjct: 576  SKKTLRSSLEGPTILDIEKFHRESFFYTHLINFSETLQQCCDLSQLWFREFFLELTMGRR 635

Query: 651  IQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEV 710
            IQFPIE S+PW+L DH+LE++ A ++E V+   D+YNDSA  AL    ++FLYDEIEAEV
Sbjct: 636  IQFPIEMSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYDEIEAEV 695

Query: 711  DHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQP--MRLSALFKMTRV 768
            + CFD FV +L + IF YYK  A S LLD        N       P   R   L K   V
Sbjct: 696  NLCFDQFVYKLADQIFAYYKVMAGSLLLDKRLRSECKNQGATIHLPPSNRYETLLKQRHV 755

Query: 769  KLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKD 828
            +LLGRSI+L  LI +R++    ++LE    RFES+DL +IVEL+ LL+I + TH+LLS+ 
Sbjct: 756  QLLGRSIDLNRLITQRVSAAMYKSLELAIGRFESEDLTSIVELDGLLEINRMTHKLLSRY 815

Query: 829  LSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLA 888
            L++D F  +  E   N+S  +   R+   ++ E+  DFLPN+    +T RF+R+      
Sbjct: 816  LTLDGFDAMFREANHNVS--APYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQ 873

Query: 889  SVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRAL 948
              Q+   P A+P +  G++ LN A+ S    +  F G PH   I RLLG + +  ++  L
Sbjct: 874  EFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEEL 933

Query: 949  LDHMSNKIT-TLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNW-GTKSELKAEV 1006
            L  + + +  T+   +  L E +PK   L   + G  G +     QL      +ELK   
Sbjct: 934  LKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVC 993

Query: 1007 LHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNL 1066
               ++E+G+ + +  L++  L   +    +  AP+   LP    +     D     + + 
Sbjct: 994  FQNLREVGNAILFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESK 1053

Query: 1067 FKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTG-SVLEYALAFTSAALDKYC 1125
            +    A +   P      +       A   DLL K  +  G S+ E  L    + LD   
Sbjct: 1054 Y----APLHLVPLIERLGT-PQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSFLDDPI 1108

Query: 1126 SKWSATPKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYL 1185
                  P  G + +    +F+R++S +Q  Y            +  GD + W GC II L
Sbjct: 1109 -WRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVL 1167

Query: 1186 LGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSM 1245
            LGQQ  F + DF Y +L V + +                 + ++E ++K + LN+ + ++
Sbjct: 1168 LGQQRRFAVLDFCYHLLKVQKHDGKDEIIKNVP------LKKMVERIRKFQILNDEIITI 1221

Query: 1246 LKARCPLEDKTACAIKQSGAPLHRIKF 1272
            L       DK   +    G P+  ++ 
Sbjct: 1222 L-------DKYLKSGDGEGTPVEHVRC 1241

PyMOL of 3p8c

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00