Citrus Sinensis ID: 000790

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280---

MEKGAAAKLVDLDKTTQLLEPEITNGGGLFVPNKERPIFRAPGAKAQSGLGVRAVEKGGGSQIDDGFKVPRVASVAASIDEEEKSESSGIDEVVSNATNGKRSHASRRYRETSARDITDAENPMAVGRAGETAGTHRSNEHAYVEVSSSTGSSYSVLSTSSRHDRDDRGSERKYLKDDTRSESRGPSRRDNYDSKGRYRGREARDRDEPEYGGEYGRKRSKYDGTRRTPGRSDWDDGRWEWEDTPRREGYSNSSKRYQPSPSPMFVGASPDARLVSPLSTPRSNGYAASPWDHISPSPVPIRASGSSVKSSSSGYSRRSHQLTFSRESSQSFEDGVADETYSEEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQNKSRQRFWELAGSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSMLEHKKKQKESKTAMEEEMENLRKIQADEERENKAKEREKRVKERQQVSMPGWRQGSTTYLRPKKFGL

cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccccccccccEEcccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHcccccccccccccccHHHcHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEccccccccccccHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHcccccccccEEEEccccccccccEEEccHHHHHHHHccccccccccEEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHcccccEEEEccccccccEEEccccHHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHcccccccccEEEEEEcHHHHccccccEEEEEcccccccccccccccccEEEEEEcHHHHHccccccccccccccEEEcccHHHHHHHccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccccHHHHHccccccHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccEEEcccccEEEEccccccccccccccEEEEEHHHcccccHHHHcccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc

cccccccccccccccccEcccccccccEEEEccccEEEEcccccccHHcHHHHHHHHHHcHccccccccccEEEEEccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHcccEEcccccccccccccccEEEEEEccccccccccEEEcccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHcccccccccccHHHHHHHccccccccccccccHHHHHHHccHHHHHHHHHHHHHHccEEEEEEcccccHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccEEEEccccHHHHHHHccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHccccEEEEccccccEEEEEcccccHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEHccccHHHHHHHcccccccccEEEEEEEEEEEEEEEccEEEEEccccEEEEEccccccccEEEEcEccHHHHHHccccccccccccEEEEEEHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHccccEEEcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHHHHHHHHHHcccccEEEEccccEEEEcccHHHHcccccccEEEEEEEEEEcHHHHHHEEcccHHHHHHHccHHEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccccccccccccccccccc

MEKGAAAklvdldkttqllepeitnggglfvpnkerpifrapgakaqsglgvravekgggsqiddgfkvprVASVAASIdeeeksessgidevvsnatngkrshasrryretsarditdaenpmavgragetagthrsnehAYVEVssstgssysvlstssrhdrddrgserkylkddtrsesrgpsrrdnydskgryrgreardrdepeyggeygrkrskydgtrrtpgrsdwddgrwewedtprregysnsskryqpspspmfvgaspdarlvsplstprsngyaaspwdhispspvpirasgssvkssssgysrrshqltfsressqsfedgvadetyseehnyEITESMRLEmeynsdrawydreegttmfdtdsssfilgddasyQKKEVELAKRLVrkdgsrmslaQSKKLSQITADNHQWEERQLLRsgavrgtelstefddeeEHKVILLVhdtkppfldgrivftkqaepvmpikdptsdmaiISRKGSALVREIREKQTQNKSRQRFWELAGSqmgnilgvkktaeqvdadtavvgeqgeidfredakfsqhmkkgeavsdfaksktLAEQRQYLPIFSVRDELLQVIRENQVVVVVGetgsgkttQLTQYLLedgyttngivgctqPRRVAAMSVAKRVSEEMDTELGDKVGYAIRfedvtgpstlIKYMTDGVLLretlkdsdldkYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLnaqkfsdffgsvpifhipgrtfpvntlysktpceDYVEAAVKQAMTIhitsppgdiliFMTGQDEIEAACFALKERMEQLISSTtrevpellilpiysqLPADLQAKIFEKAKEGTRKCIVATniaetsltvdgIFYVIDTgygkmkvynpkmgmdalqvfpvsraaadqragragrtgpgtcyRLYTESAylnemlpspvpeiqrtnlGNVVLLLKSLkidnlldfdfmdpppqenilnSMYQLWVLGALnnvgaltdlgwkmvefpldpplaKMLLMGEQLGCLDEVLTIVSMlsvpsvffrpkdraeesDAAREKFFVQESDHLTLLYVYQQWKehqyrgdwceeHYLHVKSLRKAREVRSQLLDILKTLkipltssghdfdVVRKAICSAYFHNAArlkgvgeyincrngmpchlhpssaiyglgytpeyVVYHELILTTKEYMQCATavepqwlselgpmffsvkdsdtsmlehkKKQKESKTAMEEEMENLRKIQADEERENKAKEREKRVKERQqvsmpgwrqgsttylrpkkfgl

mekgaaaklvdldkttqllepeitnggglfvpNKERPIFRApgakaqsglgVRAVEKgggsqiddgfkvpRVASVAASideeeksessgidevvsnatngkrshasrryretsarditdaenpmAVGRAgetagthrsnEHAYVevssstgssysvlstssrhdrddrgserkylkddtrsesrgpsrrdnydskgryrgreardrdepeyggeygrkrskydgtrrtpgrsdwddgrwewedtprregysnsskryqpspsPMFVGASPDARLVSPLSTPRSNGYaaspwdhispspvpirasgssvkssssgysrrshqltfsressqsfedgvadetyseehnyeitesmrlemEYNSDRAWYDREEGTtmfdtdsssfilgddasyqKKEVELAKRlvrkdgsrmslaqskklsqitadnhQWEERQLLRSGAVRGTELstefddeeeHKVILLvhdtkppfldGRIVFTkqaepvmpikdptsdmaiISRKGSALVREIREKQTQNKSRQRFWELAGSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVvgetgsgkttqLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRvseemdtelgdkvgyairfedvtgpstlikYMTDGVLLretlkdsdldKYRVIVMdeaherslstdvLFGILKKVVARRRDFKLIVTSatlnaqkfsDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVatniaetsltvdgIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADqragragrtgpgtcYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTlkipltssghdfDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSMLEHKkkqkesktaMEEEMENLrkiqadeerenkakerekrvkerqqvsmpgwrqgsttylrpkkfgl

MEKGAAAKLVDLDKTTQLLEPEITNGGGLFVPNKERPIFRAPGAKAQSGLGVRAVEKGGGSQIDDGFKVPRVASVAASIDEEEKSESSGIDEVVSNATNGKRSHASRRYRETSARDITDAENPMAVGRAGETAGTHRSNEHAYVEvssstgssysvlstssRHDRDDRGSERKYLKDDTRSESRGPSRRDNYDSKGRYRGREARDRDEPEYGGEYGRKRSKYDGTRRTPGRSDWDDGRWEWEDTPRREGYSNSSKRYQPSPSPMFVGASPDARLVSPLSTPRSNGYAASPWDHISPSPVPIRAsgssvkssssgysrrsHQLTFSRESSQSFEDGVADETYSEEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQNKSRQRFWELAGSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQvvvvvGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSraaadqragragrtgpgtCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVlllkslkidnlldFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSMLEHKKKQKESKTAMEEEMENLRKIQADeerenkakerekrvkerQQVSMPGWRQGSTTYLRPKKFGL

**********************ITNGGGLFV********************************************************************************************************************************************************************************************************************************************************************************************************************************************AWY**************************************************************************************HKVILLVHDTKPPFLDGRIVFTKQA***************************************FWELAGSQMGNILGVKKTA**V***TAVV*********************************AEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRV****DTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRA**********RTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFR*************KFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSV**************************************************************************

**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************RAWYDREEGTT********************************************************RQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVF***********DPTSDMAIISRK*************************************************************************************RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERM*********EVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVF*****************FVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFS************************************************************************F**

MEKGAAAKLVDLDKTTQLLEPEITNGGGLFVPNKERPIFRAPGAKAQSGLGVRAVEKGGGSQIDDGFKVPRVASV***************DEVVSN*****************ARDITDAENPMAVGRAGETAGTHRSNEH**************************************************YDSKGRYRGREARDRDEPEYGGEYGRKRSK***********DWDDGRWEWEDTP**************SPSPMFVGASPDARLVSPLSTPRSNGYAASPWDHISPSPVP***************************************TYSEEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQNKSRQRFWELAGSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRA***********TGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPK*********REKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDS**********************ENLRKIQAD************************WRQGSTTYLRPKKFGL

*************KTTQLLEPEITNGGGLFVPNKERPIFRAPGAKAQSGLGVRAVEKGGG*********PR***************************************************************************************************************************************************************************************************************************************************************************************ESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKR*********************ADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQNKSRQRFWELAGSQMGNI*GVK******************************************SKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAA***********GPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDS***********************************************************************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MEKGAAAKLVDLDKTTQLLEPEITNGGGLFVPNKERPIFRAPGAKAQSGLGVRAVEKGGGSQIDDGFKVPRVASVAASIDEEEKSESSGIDEVVSNATNGKRSHASRRYRETSARDITDAENPMAVGRAGETAGTHRSNEHAYVEVSSSTGSSYSVLSTSSRHDRDDRGSERKYLKDDTRSESRGPSRRDNYDSKGRYRGREARDRDEPEYGGEYGRKRSKYDGTRRTPGRSDWDDGRWEWEDTPRREGYSNSSKRYQPSPSPMFVGASPDARLVSPLSTPRSNGYAASPWDHISPSPVPIRASGSSVKSSSSGYSRRSHQLTFSRESSQSFEDGVADETYSEEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQNKSRQRFWELAGSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSMLEHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVSMPGWRQGSTTYLRPKKFGL

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1283	2.2.26 [Sep-21-2011]
Q17R09		1227	Pre-mRNA-splicing factor	yes	no	0.734	0.768	0.549	0.0
Q92620		1227	Pre-mRNA-splicing factor	yes	no	0.738	0.772	0.559	0.0
P34498		1131	Probable pre-mRNA-splicin	yes	no	0.681	0.773	0.581	0.0
Q9P774		1173	Pre-mRNA-splicing factor	yes	no	0.713	0.780	0.511	0.0
Q54F05		1160	ATP-dependent RNA helicas	no	no	0.610	0.675	0.479	0.0
Q14562		1220	ATP-dependent RNA helicas	no	no	0.614	0.646	0.488	0.0
A2A4P0		1244	ATP-dependent RNA helicas	no	no	0.613	0.632	0.488	0.0
Q38953		1168	Probable pre-mRNA-splicin	no	no	0.641	0.704	0.462	0.0
Q09530		1200	Probable pre-mRNA-splicin	no	no	0.615	0.658	0.483	0.0
P15938		1071	Pre-mRNA-splicing factor	yes	no	0.552	0.661	0.515	0.0

>sp\|Q17R09\|PRP16_BOVIN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1	Back alignment and function desciption

 Score = 1132 bits (2927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1008 (54%), Positives = 727/1008 (72%), Gaps = 65/1008 (6%)

Query: 228  TPGRSDW---DDG-----RWEWEDTPRREGYSNSSKRYQPSPSPMFVGASPDARLVSPLS 279
            TP RS W   D G     R +WE       Y +S + ++PS               +PL 
Sbjct: 209  TPSRSTWEEEDSGYGSSRRSQWESPSPTPSYRDSERSHRPSSRDRDRSVRSRYSDDTPLP 268

Query: 280  TPRSNGYAASPWD----HISPSPVPIRASGSSVKSSSSGYSRRSHQLTFSRESSQSFEDG 335
            TP    Y  + W     H+  +P                      +L+  R   +  E+G
Sbjct: 269  TP---SYKYNEWADDRRHLGSTP----------------------RLSRGRGRREDGEEG 303

Query: 336  VADETYSEEHNYEITESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEV 395
            ++ +T  E   +E       + +  +DR WY  +EG   +D   +      D   +++E 
Sbjct: 304  ISFDTEEERQQWE-------DDQRQADRDWYMMDEG---YDEFHNPLAYSSDDYVRRREQ 353

Query: 396  ELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKV 455
             L K+  ++         S +  QI  DN +WE  ++L SG V   E+  +F+++   KV
Sbjct: 354  HLHKQKQKR--------ISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDSAAKV 405

Query: 456  ILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQNKSRQ 515
             L+VH+  PPFLDGRIVFTKQ EPV+P+KD TSD+AII+RKGS  VR+ RE++ + K++ 
Sbjct: 406  HLMVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQH 465

Query: 516  RFWELAGSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMKK-GEAVSDFAK 574
            + WELAG+++G+I+GVKK  E    D ++  E G++D+R + KF+ HMKK  EA S+FAK
Sbjct: 466  KHWELAGTKLGDIMGVKKEEE---PDKSLT-EDGKVDYRTEQKFADHMKKKSEASSEFAK 521

Query: 575  SKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVG 634
             K++ EQRQYLPIF+V+ ELL +IR+N +V+VVGETGSGKTTQLTQYL EDGYT  G++G
Sbjct: 522  KKSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIG 581

Query: 635  CTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDS 694
            CTQPRRVAAMSVAKRVSEEM   LG++VGYAIRFED T  STLIKYMTDG+LLRE+L+++
Sbjct: 582  CTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSESTLIKYMTDGILLRESLREA 641

Query: 695  DLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPI 754
            DLD Y  I+MDEAHERSL+TDVLFG+L++VVARR D KLIVTSAT++A+KF+ FFG+VPI
Sbjct: 642  DLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFASFFGNVPI 701

Query: 755  FHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALK 814
            FHIPGRTFPV+ L+SKTP EDYVEAAVKQ++ +H++  PGDILIFM GQ++IE     + 
Sbjct: 702  FHIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIV 761

Query: 815  ERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDG 874
            E +E+L        P L +LPIYSQLP+DLQAKIF+KA +G RKCIVATNIAETSLTVDG
Sbjct: 762  EHLEEL-----ENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDG 816

Query: 875  IFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLN 934
            I +VID+GY K+KV+NP++GMDALQ++P+S+A A+QR+GRAGRTGPG C+RLYT+SAY N
Sbjct: 817  IMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKN 876

Query: 935  EMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNV 994
            E+L + VPEIQRTNL NVVLLLKSL + +LL F FMDPPP++N+LNSMYQLW+LGAL+N 
Sbjct: 877  ELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNT 936

Query: 995  GALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDA 1054
            G LT  G  MVEFPLDP L+KML++   +GC  E+L IVSMLSVP++F+RPK R EESD 
Sbjct: 937  GGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQ 996

Query: 1055 AREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLK 1114
             REKF V ESDHL+ L VY QWK + Y   WC +H++H K++RK REVR+QL DI+   +
Sbjct: 997  IREKFAVPESDHLSYLNVYLQWKNNNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQR 1056

Query: 1115 IPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEY 1174
            + L S G D+D+VRK IC+AYFH AA+LKG+GEY+N R GMPCHLHP+S+++G+GYTP+Y
Sbjct: 1057 MSLASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDY 1116

Query: 1175 VVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSMLEHKKK 1222
            +VYHEL++TTKEYMQC TAV+ +WL+ELGPMF+SVK +  S  E++++
Sbjct: 1117 IVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRR 1164

Probable ATP-binding RNA helicase involved in pre-mRNA splicing.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3

>sp\|Q92620\|PRP16_HUMAN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2	Back alignment and function description

>sp\|P34498\|MOG1_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=1 SV=2	Back alignment and function description

>sp\|Q9P774\|PRP16_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp16 PE=3 SV=2	Back alignment and function description

>sp\|Q54F05\|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1	Back alignment and function description

>sp\|Q14562\|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1	Back alignment and function description

>sp\|A2A4P0\|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1	Back alignment and function description

>sp\|Q38953\|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2	Back alignment and function description

>sp\|Q09530\|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=1 SV=1	Back alignment and function description

>sp\|P15938\|PRP16_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP16 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1283
359473576		1289	PREDICTED: pre-mRNA-splicing factor ATP-	0.998	0.993	0.796	0.0
255572389		1269	ATP-dependent RNA helicase, putative [Ri	0.979	0.990	0.808	0.0
357454387		1269	Pre-mRNA-splicing factor ATP-dependent R	0.985	0.996	0.781	0.0
449462491		1298	PREDICTED: pre-mRNA-splicing factor ATP-	0.988	0.976	0.769	0.0
356547300		1270	PREDICTED: pre-mRNA-splicing factor ATP-	0.980	0.990	0.772	0.0
356557396		1272	PREDICTED: pre-mRNA-splicing factor ATP-	0.984	0.992	0.770	0.0
449521509		1178	PREDICTED: pre-mRNA-splicing factor ATP-	0.898	0.978	0.804	0.0
312282163		1255	unnamed protein product [Thellungiella h	0.971	0.993	0.759	0.0
334187649		1255	pre-mRNA-splicing factor ATP-dependent R	0.971	0.993	0.744	0.0
115472287		1280	Os07g0508000 [Oryza sativa Japonica Grou	0.978	0.980	0.727	0.0

>gi\|359473576\|ref\|XP_002264955.2\| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 2034 bits (5270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1028/1291 (79%), Positives = 1144/1291 (88%), Gaps = 10/1291 (0%)

Query: 1    MEK-GAAAKLVDLDKTTQLLEPEITNGGGLFVPNKERPIFRAPGAKAQSGLGVRAVEKGG 59
            MEK G  A  +DLD+ T   EP+   GGGL VP K+R +FR P  K+  GL V A  K G
Sbjct: 1    MEKRGVDAGPIDLDQATVTFEPDQGGGGGLHVPGKDRVVFRPPQRKSLLGLDVLADAKRG 60

Query: 60   GSQIDDGFKVPRV--ASVAASIDEEEKSESSGIDEVVSNATNGKRSHASRRYRETSARDI 117
            GS+ D  FKVPR   ASV AS+DEEE S SSGIDE +S   +G R+ + RRYRET+A + 
Sbjct: 61   GSKADGAFKVPREKGASVVASMDEEESSLSSGIDEEISTVISGVRNGSGRRYRETAASEA 120

Query: 118  TDAE-NPMAVGRAGETAGTHRSNEHAYVEV-SSSTGSSYSVLSTSSRHDRDDRGSERKYL 175
            +  E N    G   +T  THRSNE    E  ++S+GSS S  S SSR++RD+R SER+  
Sbjct: 121  SHLESNVTQEGAVSDTFETHRSNERMPSESPATSSGSSRSSWSRSSRYERDNRNSERRDY 180

Query: 176  KDDTRSESRGPSRRDNYDSKGRYRGREARDRDEPEYGGEYGRKRSKYDGTRRTPGRSDWD 235
            KDDTRSE+R    R +YD + + R  EAR R   EY G+YGRKRSKY+ +RRTPGRSDWD
Sbjct: 181  KDDTRSENRRVRHRYDYDDREQNREGEARGRYAQEYNGQYGRKRSKYEVSRRTPGRSDWD 240

Query: 236  DGRWEWEDTPRREGYSNSSKRYQPSPSPMFVGASPDARLVSPL---STPRSNGYAASPWD 292
            DGRWEWE+TP+R+G+SN+S+R+QPSPSPM VG+SPDARLVSP     TP + G AASPWD
Sbjct: 241  DGRWEWEETPQRDGHSNTSRRHQPSPSPMLVGSSPDARLVSPWFGGQTPHTTGSAASPWD 300

Query: 293  HISPSPVPIRASGSSVKSSSSGYSRRSHQLTFSRESSQSFEDGVADETYSEEHNYEITES 352
             ISPSPVPIRASG+SV+SSSS +S RSHQL FS E+ QSFED   D++Y    N EITES
Sbjct: 301  TISPSPVPIRASGASVRSSSSKHSGRSHQLNFSVENLQSFEDKEDDKSYLA--NQEITES 358

Query: 353  MRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLA 412
            MRLEMEYNSDRAWYDREEG TMFD  +SSF LGD+AS+QKKE ELAK+LVR+DG++M+LA
Sbjct: 359  MRLEMEYNSDRAWYDREEGNTMFDGGTSSFFLGDEASFQKKEAELAKKLVRRDGTKMTLA 418

Query: 413  QSKKLSQITADNHQWEERQLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIV 472
            QSKKLSQ+TADN QWE+RQLLRSGAVRGTE+ TEFDDEEE KVILLVHDTKPPFLDGR+V
Sbjct: 419  QSKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTEFDDEEERKVILLVHDTKPPFLDGRVV 478

Query: 473  FTKQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQNKSRQRFWELAGSQMGNILGVK 532
            FTKQAEP+MP+KDPTSDMAIISRKGSALVRE+ EKQ+ NKSRQRFWELAGS++G+ILGV+
Sbjct: 479  FTKQAEPIMPLKDPTSDMAIISRKGSALVREVHEKQSMNKSRQRFWELAGSKLGDILGVE 538

Query: 533  KTAEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRD 592
            KTAEQ+DADTAVVGE+GE+DF+EDAKF+QH+KK EAVS+FAKSKTLAEQRQYLPI+SVR+
Sbjct: 539  KTAEQIDADTAVVGEEGEVDFKEDAKFAQHLKKDEAVSEFAKSKTLAEQRQYLPIYSVRE 598

Query: 593  ELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSE 652
            ELLQVIRENQVVVVVGETGSGKTTQLTQYL EDGYTTNGIVGCTQPRRVAAMSVAKRVSE
Sbjct: 599  ELLQVIRENQVVVVVGETGSGKTTQLTQYLHEDGYTTNGIVGCTQPRRVAAMSVAKRVSE 658

Query: 653  EMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSL 712
            EM+TELGDKVGYAIRFEDVTGP+T IKYMTDGVL+RETLKDS+LDKYRV+VMDEAHERSL
Sbjct: 659  EMETELGDKVGYAIRFEDVTGPNTKIKYMTDGVLMRETLKDSELDKYRVVVMDEAHERSL 718

Query: 713  STDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTP 772
            +TDVLFGILKKVVA+RRDFKLIVTSATLNAQKFS+FFGSVPIFHIPGRTFPVN LYSKTP
Sbjct: 719  NTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNILYSKTP 778

Query: 773  CEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELL 832
            CEDYVE AVKQAMT+HITSPPGDILIFMTGQDEIEA C+AL ERMEQL+S+T + VP+L 
Sbjct: 779  CEDYVEGAVKQAMTVHITSPPGDILIFMTGQDEIEATCYALAERMEQLVSTTKKGVPKLS 838

Query: 833  ILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPK 892
            ILPIYSQLPADLQAKIF+KA++G RKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNP+
Sbjct: 839  ILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPR 898

Query: 893  MGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNV 952
            MGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNE+L SPVPEIQRTNLGNV
Sbjct: 899  MGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNELLASPVPEIQRTNLGNV 958

Query: 953  VLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPP 1012
            VLLLKSLKI+NLLDFDFMDPPPQ+NILNSMYQLWVLGALNNVG LT+LGWKMVEFPLDPP
Sbjct: 959  VLLLKSLKIENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTELGWKMVEFPLDPP 1018

Query: 1013 LAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHLTLLYV 1072
            LAKMLL+GEQL C++EVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFV ESDHLTLL V
Sbjct: 1019 LAKMLLIGEQLECINEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNV 1078

Query: 1073 YQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAIC 1132
            YQQWK +QYRGDWC +H+LHVK LRKAREVRSQLLDILKTLKIPLTS G D+DVVRKAIC
Sbjct: 1079 YQQWKANQYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCGPDWDVVRKAIC 1138

Query: 1133 SAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCAT 1192
            SAYFHNAARLKGVGEY+NCRNGMPCHLHPSSA+YGLGYTP+YVVYHELILT KEYMQCAT
Sbjct: 1139 SAYFHNAARLKGVGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELILTAKEYMQCAT 1198

Query: 1193 AVEPQWLSELGPMFFSVKDSDTSMLEHKKKQKESKTAMEEEMENLRKIQADEERENKAKE 1252
            AVEPQWL+ELGPMFFSVKDSDTSMLEHKK+QKE K+AMEEEMENLRK Q + ER++K KE
Sbjct: 1199 AVEPQWLAELGPMFFSVKDSDTSMLEHKKRQKEEKSAMEEEMENLRKEQEEAERKSKEKE 1258

Query: 1253 REKRVKERQQVSMPGWRQGSTTYLRPKKFGL 1283
            R+KR K++QQVSMPG RQGS+TYLRPKK GL
Sbjct: 1259 RKKRAKQQQQVSMPGLRQGSSTYLRPKKMGL 1289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255572389\|ref\|XP_002527133.1\| ATP-dependent RNA helicase, putative [Ricinus communis] gi\|223533556\|gb\|EEF35296.1\| ATP-dependent RNA helicase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|357454387\|ref\|XP_003597474.1\| Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Medicago truncatula] gi\|355486522\|gb\|AES67725.1\| Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449462491\|ref\|XP_004148974.1\| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356547300\|ref\|XP_003542053.1\| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Glycine max]	Back alignment and taxonomy information

>gi\|356557396\|ref\|XP_003547002.1\| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Glycine max]	Back alignment and taxonomy information

>gi\|449521509\|ref\|XP_004167772.1\| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|312282163\|dbj\|BAJ33947.1\| unnamed protein product [Thellungiella halophila]	Back alignment and taxonomy information

>gi\|334187649\|ref\|NP_196805.2\| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Arabidopsis thaliana] gi\|332004458\|gb\|AED91841.1\| pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|115472287\|ref\|NP_001059742.1\| Os07g0508000 [Oryza sativa Japonica Group] gi\|33146483\|dbj\|BAC79592.1\| putative DEAH-box RNA helicase [Oryza sativa Japonica Group] gi\|113611278\|dbj\|BAF21656.1\| Os07g0508000 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1283
UNIPROTKB\|Q17R09		1227	DHX38 "Pre-mRNA-splicing facto	0.856	0.895	0.494	6.6e-285
ZFIN\|ZDB-GENE-040426-1144		1258	dhx38 "DEAH (Asp-Glu-Ala-His)	0.946	0.965	0.464	5.5e-283
UNIPROTKB\|E2RC56		1226	DHX38 "Uncharacterized protein	0.856	0.896	0.494	2.7e-281
UNIPROTKB\|Q92620		1227	DHX38 "Pre-mRNA-splicing facto	0.843	0.881	0.498	1.2e-280
RGD\|1310345		1228	Dhx38 "DEAH (Asp-Glu-Ala-His)	0.854	0.892	0.493	1.6e-278
UNIPROTKB\|F1MVJ1		1226	DHX38 "Pre-mRNA-splicing facto	0.856	0.896	0.488	2.1e-277
FB\|FBgn0026713		1222	l(1)G0007 "lethal (1) G0007" [	0.850	0.892	0.492	1.1e-275
DICTYBASE\|DDB_G0285843		1387	helD "putative RNA splicing fa	0.700	0.648	0.547	1.3e-272
WB\|WBGene00003389		1131	mog-1 [Caenorhabditis elegans	0.692	0.785	0.555	2.6e-272
UNIPROTKB\|P34498		1131	mog-1 "Probable pre-mRNA-splic	0.692	0.785	0.555	2.6e-272

UNIPROTKB\|Q17R09 DHX38 "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

 Score = 2689 (951.6 bits), Expect = 6.6e-285, Sum P(2) = 6.6e-285
 Identities = 568/1149 (49%), Positives = 749/1149 (65%)

Query:   162 RHDRDDRGSERKYLKDDTRSESRGPSRRDNYDSKGRYRGREARDRDEPEYGGEYGRKRSK 221
             R  R DR    +  + +T S   G S  + +  + R R RE R+     Y      K  K
Sbjct:   102 RSGRKDR--HYRSARVETPSHPGGVS--EEFWERSRQRERERREHGV--YASSKDEKDRK 155

Query:   222 YDGTR-RTPGRS-DWDD-GRWEWEDTPRREGYSN-SSKRYQPSPSPMFVGASPDARLVSP 277
              + +R R   R  D D+  R        R+G S+ SS+R +P  SP       DA   S 
Sbjct:   156 KERSRDRDCDRKRDRDERDRSRHSGRSERDGGSDRSSRRNEPE-SPRH--RPKDAATPSR 212

Query:   278 LS-TPRSNGYAAS---PWDHISPSPVPIRAXXXXXXXXXXXXXXXXHQLTFSRESSQSFE 333
              +     +GY +S    W+  SPSP P                    +  +S ++     
Sbjct:   213 STWEEEDSGYGSSRRSQWE--SPSPTPSYRDSERSHRPSSRDRDRSVRSRYSDDTPLPTP 270

Query:   334 DGVADETYSEEHNYEITESM---RLEMEYNSDRAWYDREEGTTMFDTDSSS-----FILG 385
                 +E   +  +   T  +   R   E   +   +D EE    ++ D        +++ 
Sbjct:   271 SYKYNEWADDRRHLGSTPRLSRGRGRREDGEEGISFDTEEERQQWEDDQRQADRDWYMM- 329

Query:   386 DDASYQKKEVELAKR---LVRKDGSRMSLAQSKKLS----QITADNHQWEERQLLRSGAV 438
              D  Y +    LA      VR+    +   + K++S    QI  DN +WE  ++L SG V
Sbjct:   330 -DEGYDEFHNPLAYSSDDYVRRREQHLHKQKQKRISAQRRQINEDNERWETNRMLTSGVV 388

Query:   439 RGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGS 498
                E+  +F+++   KV L+VH+  PPFLDGRIVFTKQ EPV+P+KD TSD+AII+RKGS
Sbjct:   389 HRLEVDEDFEEDSAAKVHLMVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGS 448

Query:   499 ALVREIREKQTQNKSRQRFWELAGSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAK 558
               VR+ RE++ + K++ + WELAG+++G+I+GVKK  E    D ++  E G++D+R + K
Sbjct:   449 QTVRKHREQKERKKAQHKHWELAGTKLGDIMGVKKEEEP---DKSLT-EDGKVDYRTEQK 504

Query:   559 FSQHMKK-GEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQXXXXXGETGSGKTTQ 617
             F+ HMKK  EA S+FAK K++ EQRQYLPIF+V+ ELL +IR+N      GETGSGKTTQ
Sbjct:   505 FADHMKKKSEASSEFAKKKSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQ 564

Query:   618 LTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTL 677
             LTQYL EDGYT  G++GCTQPRRVAAMSVAKRVSEEM   LG++VGYAIRFED T  STL
Sbjct:   565 LTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSESTL 624

Query:   678 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 737
             IKYMTDG+LLRE+L+++DLD Y  I+MDEAHERSL+TDVLFG+L++VVARR D KLIVTS
Sbjct:   625 IKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTS 684

Query:   738 ATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDIL 797
             AT++A+KF+ FFG+VPIFHIPGRTFPV+ L+SKTP EDYVEAAVKQ++ +H++  PGDIL
Sbjct:   685 ATMDAEKFASFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVHLSGAPGDIL 744

Query:   798 IFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTR 857
             IFM GQ++IE     + E +E+L        P L +LPIYSQLP+DLQAKIF+KA +G R
Sbjct:   745 IFMPGQEDIEVTSDQIVEHLEEL-----ENAPALAVLPIYSQLPSDLQAKIFQKAPDGVR 799

Query:   858 KCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSXXXXXXXXXXXXX 917
             KCIVATNIAETSLTVDGI +VID+GY K+KV+NP++GMDALQ++P+S             
Sbjct:   800 KCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGR 859

Query:   918 XXXXXCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQEN 977
                  C+RLYT+SAY NE+L + VPEIQRTNL NVV             F FMDPPP++N
Sbjct:   860 TGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDN 919

Query:   978 ILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLS 1037
             +LNSMYQLW+LGAL+N G LT  G  MVEFPLDP L+KML++   +GC  E+L IVSMLS
Sbjct:   920 MLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLS 979

Query:  1038 VPSVFFRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLR 1097
             VP++F+RPK R EESD  REKF V ESDHL+ L VY QWK + Y   WC +H++H K++R
Sbjct:   980 VPAIFYRPKGREEESDQIREKFAVPESDHLSYLNVYLQWKNNNYSTIWCNDHFIHAKAMR 1039

Query:  1098 KAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPC 1157
             K REVR+QL DI+   ++ L S G D+D+VRK IC+AYFH AA+LKG+GEY+N R GMPC
Sbjct:  1040 KVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPC 1099

Query:  1158 HLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSML 1217
             HLHP+S+++G+GYTP+Y+VYHEL++TTKEYMQC TAV+ +WL+ELGPMF+SVK +  S  
Sbjct:  1100 HLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQ 1159

Query:  1218 EHKKKQKESKTAMEEEMENLRKIQADXXXXXXXXXXXXXXXXXQQVSMPGWR-QGS--TT 1274
             E++++ KE  +AMEEEM  L + Q                    ++  PG + QG   T 
Sbjct:  1160 ENRRRAKEEASAMEEEMA-LAEEQLRARRQEQEKRSPLGSVRSTKIYTPGRKEQGEPMTP 1218

Query:  1275 YLRPKKFGL 1283
                P +FGL
Sbjct:  1219 RRTPARFGL 1227

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN\|ZDB-GENE-040426-1144 dhx38 "DEAH (Asp-Glu-Ala-His) box polypeptide 38" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RC56 DHX38 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q92620 DHX38 "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1310345 Dhx38 "DEAH (Asp-Glu-Ala-His) box polypeptide 38" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MVJ1 DHX38 "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

FB\|FBgn0026713 l(1)G0007 "lethal (1) G0007" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0285843 helD "putative RNA splicing factor" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

WB\|WBGene00003389 mog-1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|P34498 mog-1 "Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1" [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9P774	PRP16_SCHPO	3, ., 6, ., 4, ., 1, 3	0.5110	0.7139	0.7809	yes	no
Q17R09	PRP16_BOVIN	3, ., 6, ., 4, ., 1, 3	0.5496	0.7349	0.7685	yes	no
P34498	MOG1_CAEEL	3, ., 6, ., 4, ., 1, 3	0.5813	0.6819	0.7736	yes	no
Q92620	PRP16_HUMAN	3, ., 6, ., 4, ., 1, 3	0.5593	0.7388	0.7726	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.13	0.914
3rd Layer	3.6.4	0.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1283
COG1643		845	COG1643, HrpA, HrpA-like helicases [DNA replicatio	0.0
TIGR01967		1283	TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H	1e-150
PRK11131		1294	PRK11131, PRK11131, ATP-dependent RNA helicase Hrp	1e-136
TIGR01970		819	TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H	9e-87
PRK11664		812	PRK11664, PRK11664, ATP-dependent RNA helicase Hrp	3e-72
pfam04408		91	pfam04408, HA2, Helicase associated domain (HA2)	2e-40
pfam07717		109	pfam07717, OB_NTP_bind, Oligonucleotide/oligosacch	5e-35
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	8e-31
smart00847		82	smart00847, HA2, Helicase associated domain (HA2)	1e-30
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	6e-27
PHA02653		675	PHA02653, PHA02653, RNA helicase NPH-II; Provision	5e-19
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	4e-13
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	1e-11
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	4e-11
pfam00270		169	pfam00270, DEAD, DEAD/DEAH box helicase	1e-04
pfam13191		154	pfam13191, AAA_16, AAA ATPase domain	3e-04
COG1205		851	COG1205, COG1205, Distinct helicase family with a	0.001
pfam13401		124	pfam13401, AAA_22, AAA domain	0.002
COG0513		513	COG0513, SrmB, Superfamily II DNA and RNA helicase	0.002
TIGR01642		509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	0.004

>gnl\|CDD\|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

 Score =  716 bits (1851), Expect = 0.0
 Identities = 283/702 (40%), Positives = 383/702 (54%), Gaps = 64/702 (9%)

Query: 568  AVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY 627
            A S  A    + E R  LP+ +VRDE+L+ I +NQVV++VGETGSGKTTQL Q+LLE+G 
Sbjct: 32   ARSRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL 91

Query: 628  TTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLL 687
               G +GCTQPRR+AA SVA+RV+EE+  +LG+ VGY+IRFE    P T IK MTDG+LL
Sbjct: 92   GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILL 151

Query: 688  RETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRR-DFKLIVTSATLNAQKFS 746
            RE   D  L  Y V+++DEAHERSL+TD+L G+LK ++ARRR D KLI+ SATL+A++FS
Sbjct: 152  REIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFS 211

Query: 747  DFFGSVPIFHIPGRTFPVNTLYSKTPCEDY-VEAAVKQAMTIHITSPPGDILIFMTGQDE 805
             +FG+ P+  I GRT+PV   Y      DY +  A+  A+ IH+    G IL+F+ GQ E
Sbjct: 212  AYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQRE 271

Query: 806  IEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNI 865
            IE     L++              +L ILP+Y  L A+ Q ++FE A  G RK ++ATNI
Sbjct: 272  IERTAEWLEKA---------ELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNI 322

Query: 866  AETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYR 925
            AETSLT+ GI YVID+G  K K Y+P+ G+  L+  P+S+A+ADQRAGRAGRTGPG CYR
Sbjct: 323  AETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYR 382

Query: 926  LYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKID-NLLDFDFMDPPPQENILNSMYQ 984
            LY+E  +L       +PEI RT+L  +VL LKSL I  ++  F F+DPPP+  I  ++  
Sbjct: 383  LYSEEDFL-AFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTL 441

Query: 985  LWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVP---SV 1041
            L  LGAL++ G LT LG +M   PLDP LA+MLL   + GCL E  TI SMLS     S 
Sbjct: 442  LQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESD 501

Query: 1042 FFRP-------KDRAEESDAAREKFFVQESDHLTLLYVYQQWKE------HQYRGDWCEE 1088
            F R          +       R        DHL LL  +              R + C  
Sbjct: 502  FSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRA 561

Query: 1089 HYLHVKSLRKAREVRSQLL-DILKTLKIPLTSSGHD------------------FDVVRK 1129
                 K+L +A  + + LL          L ++  D                  +D +R 
Sbjct: 562  MLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRG 621

Query: 1130 AICSAYFHNAARLKGVGE-YINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEY- 1187
            A+ +    N A+L+  G  Y+   +  P   HPSS +       E++ Y E + T K Y 
Sbjct: 622  ALAAGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSS-VRLGLVLLEWIKYAEFLRTRKGYL 680

Query: 1188 ----------MQCATAVEPQWLSELGP---MFFSVKDSDTSM 1216
                      +Q    +   WL E          +  +    
Sbjct: 681  REGRGERWPDVQTLIELLKLWLKEQVKGLRGLDGLTKAAMKQ 722

Length = 845

>gnl\|CDD\|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA	Back alignment and domain information

>gnl\|CDD\|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>gnl\|CDD\|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB	Back alignment and domain information

>gnl\|CDD\|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>gnl\|CDD\|218070 pfam04408, HA2, Helicase associated domain (HA2)	Back alignment and domain information

>gnl\|CDD\|219532 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional	Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|215832 pfam00270, DEAD, DEAD/DEAH box helicase	Back alignment and domain information

>gnl\|CDD\|221970 pfam13191, AAA_16, AAA ATPase domain	Back alignment and domain information

>gnl\|CDD\|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|222104 pfam13401, AAA_22, AAA domain	Back alignment and domain information

>gnl\|CDD\|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1283
KOG0924		1042	consensus mRNA splicing factor ATP-dependent RNA h	100.0
KOG0923		902	consensus mRNA splicing factor ATP-dependent RNA h	100.0
KOG0922		674	consensus DEAH-box RNA helicase [RNA processing an	100.0
KOG0925		699	consensus mRNA splicing factor ATP-dependent RNA h	100.0
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	100.0
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	100.0
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	100.0
KOG0926		1172	consensus DEAH-box RNA helicase [RNA processing an	100.0
KOG0920		924	consensus ATP-dependent RNA helicase A [RNA proces	100.0
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	100.0
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	100.0
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	100.0
PHA02653		675	RNA helicase NPH-II; Provisional	100.0
PRK01172		674	ski2-like helicase; Provisional	100.0
PRK02362		737	ski2-like helicase; Provisional	100.0
PRK00254		720	ski2-like helicase; Provisional	100.0
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	100.0
PTZ00110		545	helicase; Provisional	100.0
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	100.0
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	100.0
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	100.0
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	100.0
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	100.0
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	100.0
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	100.0
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	100.0
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	100.0
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	100.0
PTZ00424		401	helicase 45; Provisional	100.0
COG1204		766	Superfamily II helicase [General function predicti	100.0
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	100.0
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0343		758	consensus RNA Helicase [RNA processing and modific	100.0
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	100.0
COG1202		830	Superfamily II helicase, archaea-specific [General	100.0
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	100.0
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	100.0
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	100.0
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	100.0
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	100.0
PRK13767		876	ATP-dependent helicase; Provisional	100.0
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	100.0
KOG0334		997	consensus RNA helicase [RNA processing and modific	99.98
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	99.98
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	99.97
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	99.97
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.97
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.97
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.97
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.97
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	99.97
PRK10689		1147	transcription-repair coupling factor; Provisional	99.97
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	99.97
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.97
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	99.97
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	99.97
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.97
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.97
KOG0347		731	consensus RNA helicase [RNA processing and modific	99.97
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	99.96
KOG0346		569	consensus RNA helicase [RNA processing and modific	99.96
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.95
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.95
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.95
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	99.95
KOG4284		980	consensus DEAD box protein [Transcription]	99.95
COG1205		851	Distinct helicase family with a unique C-terminal	99.94
KOG0354		746	consensus DEAD-box like helicase [General function	99.94
PRK13766		773	Hef nuclease; Provisional	99.94
PHA02558		501	uvsW UvsW helicase; Provisional	99.94
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	99.93
PRK09401		1176	reverse gyrase; Reviewed	99.93
KOG0327		397	consensus Translation initiation factor 4F, helica	99.92
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.92
PRK14701		1638	reverse gyrase; Provisional	99.92
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	99.91
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.91
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	99.91
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	99.91
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	99.91
PRK05580		679	primosome assembly protein PriA; Validated	99.91
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	99.91
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.9
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.9
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	99.9
PRK09694		878	helicase Cas3; Provisional	99.9
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	99.9
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.89
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.89
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.89
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.87
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	99.87
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.86
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.86
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.84
KOG0353		695	consensus ATP-dependent DNA helicase [General func	99.83
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	99.81
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.8
PRK04914		956	ATP-dependent helicase HepA; Validated	99.8
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.78
PF07717		114	OB_NTP_bind: Oligonucleotide/oligosaccharide-bindi	99.77
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.77
PRK12904		830	preprotein translocase subunit SecA; Reviewed	99.75
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	99.72
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	99.71
PRK13107		908	preprotein translocase subunit SecA; Reviewed	99.7
PF04408		102	HA2: Helicase associated domain (HA2); InterPro: I	99.68
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	99.67
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	99.67
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	99.66
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.65
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	99.65
COG1198		730	PriA Primosomal protein N' (replication factor Y)	99.64
smart00847		92	HA2 Helicase associated domain (HA2) Add an annota	99.59
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.58
COG4096		875	HsdR Type I site-specific restriction-modification	99.56
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	99.54
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	99.52
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	99.51
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.47
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	99.45
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.43
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	99.42
PRK12326		764	preprotein translocase subunit SecA; Reviewed	99.42
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	99.38
PRK05298		652	excinuclease ABC subunit B; Provisional	99.37
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.37
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	99.36
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	99.36
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	99.33
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	99.33
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	99.33
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	99.29
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.26
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.25
CHL00122		870	secA preprotein translocase subunit SecA; Validate	99.23
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	99.19
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	99.15
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	99.12
PRK14873		665	primosome assembly protein PriA; Provisional	99.1
KOG1123		776	consensus RNA polymerase II transcription initiati	99.09
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.07
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	99.04
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	99.0
KOG0387		923	consensus Transcription-coupled repair protein CSB	98.98
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	98.95
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	98.84
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	98.8
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	98.78
COG4889		1518	Predicted helicase [General function prediction on	98.74
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	98.73
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	98.68
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	98.56
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	98.56
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	98.05
PF00448		196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.02
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	98.0
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	97.99
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.97
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	97.96
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	97.96
COG0610		962	Type I site-specific restriction-modification syst	97.92
COG1419		407	FlhF Flagellar GTP-binding protein [Cell motility	97.91
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	97.86
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	97.82
PRK11889		436	flhF flagellar biosynthesis regulator FlhF; Provis	97.77
TIGR02768		744	TraA_Ti Ti-type conjugative transfer relaxase TraA	97.75
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	97.72
PRK13889		988	conjugal transfer relaxase TraA; Provisional	97.68
TIGR01447		586	recD exodeoxyribonuclease V, alpha subunit. This f	97.67
PRK14722		374	flhF flagellar biosynthesis regulator FlhF; Provis	97.66
PRK05703		424	flhF flagellar biosynthesis regulator FlhF; Valida	97.66
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.65
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	97.61
PRK10875		615	recD exonuclease V subunit alpha; Provisional	97.61
PRK10536		262	hypothetical protein; Provisional	97.59
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	97.58
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	97.56
PF13245		76	AAA_19: Part of AAA domain	97.54
PRK12724		432	flagellar biosynthesis regulator FlhF; Provisional	97.5
KOG1803		649	consensus DNA helicase [Replication, recombination	97.49
PRK12726		407	flagellar biosynthesis regulator FlhF; Provisional	97.47
PRK06526		254	transposase; Provisional	97.44
PRK13826		1102	Dtr system oriT relaxase; Provisional	97.33
KOG2340		698	consensus Uncharacterized conserved protein [Funct	97.32
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	97.29
TIGR02760		1960	TraI_TIGR conjugative transfer relaxase protein Tr	97.29
PRK14974		336	cell division protein FtsY; Provisional	97.26
smart00382		148	AAA ATPases associated with a variety of cellular	97.23
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.22
PRK15483		986	type III restriction-modification system StyLTI en	97.2
PRK14723		767	flhF flagellar biosynthesis regulator FlhF; Provis	97.19
PRK08181		269	transposase; Validated	97.17
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	97.16
PRK12727		559	flagellar biosynthesis regulator FlhF; Provisional	97.15
PRK14721		420	flhF flagellar biosynthesis regulator FlhF; Provis	97.1
PF12340		229	DUF3638: Protein of unknown function (DUF3638); In	97.09
PRK06995		484	flhF flagellar biosynthesis regulator FlhF; Valida	97.06
PRK04296		190	thymidine kinase; Provisional	97.06
PF05729		166	NACHT: NACHT domain	96.99
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	96.97
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	96.97
PRK10416		318	signal recognition particle-docking protein FtsY;	96.9
PRK06731		270	flhF flagellar biosynthesis regulator FlhF; Valida	96.89
PF05970		364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	96.82
PF13173		128	AAA_14: AAA domain	96.8
PHA03333		752	putative ATPase subunit of terminase; Provisional	96.79
PRK07952		244	DNA replication protein DnaC; Validated	96.76
PF00580		315	UvrD-helicase: UvrD/REP helicase N-terminal domain	96.64
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.62
TIGR00064		272	ftsY signal recognition particle-docking protein F	96.6
KOG4439		901	consensus RNA polymerase II transcription terminat	96.6
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	96.55
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	96.54
PRK08727		233	hypothetical protein; Validated	96.51
PRK09183		259	transposase/IS protein; Provisional	96.47
COG1444		758	Predicted P-loop ATPase fused to an acetyltransfer	96.46
PRK06893		229	DNA replication initiation factor; Validated	96.45
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	96.44
PRK06835		329	DNA replication protein DnaC; Validated	96.38
TIGR00376		637	DNA helicase, putative. The gene product may repre	96.31
KOG1802		935	consensus RNA helicase nonsense mRNA reducing fact	96.29
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.28
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	96.24
cd01120		165	RecA-like_NTPases RecA-like NTPases. This family i	96.23
PRK08903		227	DnaA regulatory inactivator Hda; Validated	96.21
TIGR01425		429	SRP54_euk signal recognition particle protein SRP5	96.21
TIGR00959		428	ffh signal recognition particle protein. This mode	96.2
PRK00771		437	signal recognition particle protein Srp54; Provisi	96.13
PRK07764		824	DNA polymerase III subunits gamma and tau; Validat	96.11
PF01695		178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.08
PRK05642		234	DNA replication initiation factor; Validated	96.08
PHA02533		534	17 large terminase protein; Provisional	96.07
PRK14956		484	DNA polymerase III subunits gamma and tau; Provisi	96.06
PRK14949		944	DNA polymerase III subunits gamma and tau; Provisi	96.05
TIGR03499		282	FlhF flagellar biosynthetic protein FlhF.	96.04
PRK12402		337	replication factor C small subunit 2; Reviewed	96.02
PRK08084		235	DNA replication initiation factor; Provisional	96.02
PRK08691		709	DNA polymerase III subunits gamma and tau; Validat	96.0
cd01124		187	KaiC KaiC is a circadian clock protein primarily f	95.94
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	95.93
PRK12377		248	putative replication protein; Provisional	95.93
COG1484		254	DnaC DNA replication protein [DNA replication, rec	95.89
PRK14952		584	DNA polymerase III subunits gamma and tau; Provisi	95.85
PRK07994		647	DNA polymerase III subunits gamma and tau; Validat	95.85
PRK14958		509	DNA polymerase III subunits gamma and tau; Provisi	95.84
PRK14964		491	DNA polymerase III subunits gamma and tau; Provisi	95.84
PRK10867		433	signal recognition particle protein; Provisional	95.84
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	95.8
PRK09112		351	DNA polymerase III subunit delta'; Validated	95.78
PF05127		177	Helicase_RecD: Helicase; InterPro: IPR007807 This	95.75
PRK08116		268	hypothetical protein; Validated	95.75
PRK14961		363	DNA polymerase III subunits gamma and tau; Provisi	95.75
PRK14957		546	DNA polymerase III subunits gamma and tau; Provisi	95.74
cd03247		178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.7
PRK08939		306	primosomal protein DnaI; Reviewed	95.7
cd00267		157	ABC_ATPase ABC (ATP-binding cassette) transporter	95.65
cd03115		173	SRP The signal recognition particle (SRP) mediates	95.64
PRK06921		266	hypothetical protein; Provisional	95.63
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	95.61
PRK06645		507	DNA polymerase III subunits gamma and tau; Validat	95.59
PF05621		302	TniB: Bacterial TniB protein; InterPro: IPR008868	95.59
PRK14712		1623	conjugal transfer nickase/helicase TraI; Provision	95.57
PRK14960		702	DNA polymerase III subunits gamma and tau; Provisi	95.52
cd03221		144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.48
cd03222		177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.46
PRK14969		527	DNA polymerase III subunits gamma and tau; Provisi	95.45
TIGR02760		1960	TraI_TIGR conjugative transfer relaxase protein Tr	95.42
PRK14951		618	DNA polymerase III subunits gamma and tau; Provisi	95.41
COG1875		436	NYN ribonuclease and ATPase of PhoH family domains	95.4
TIGR02640		262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	95.39
PF00004		132	AAA: ATPase family associated with various cellula	95.37
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	95.3
KOG1002		791	consensus Nucleotide excision repair protein RAD16	95.3
COG3587		985	Restriction endonuclease [Defense mechanisms]	95.24
PRK09111		598	DNA polymerase III subunits gamma and tau; Validat	95.21
KOG0989		346	consensus Replication factor C, subunit RFC4 [Repl	95.2
PRK14962		472	DNA polymerase III subunits gamma and tau; Provisi	95.18
PRK05707		328	DNA polymerase III subunit delta'; Validated	95.16
cd03228		171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	95.16
CHL00181		287	cbbX CbbX; Provisional	95.15
COG0552		340	FtsY Signal recognition particle GTPase [Intracell	95.1
PRK13709		1747	conjugal transfer nickase/helicase TraI; Provision	95.07
PRK14959		624	DNA polymerase III subunits gamma and tau; Provisi	95.05
PRK00411		394	cdc6 cell division control protein 6; Reviewed	95.03
PHA02544		316	44 clamp loader, small subunit; Provisional	95.01
cd03229		178	ABC_Class3 This class is comprised of all BPD (Bin	95.01
PRK00149		450	dnaA chromosomal replication initiation protein; R	95.0
PTZ00112		1164	origin recognition complex 1 protein; Provisional	95.0
PRK14088		440	dnaA chromosomal replication initiation protein; P	94.96
PRK14963		504	DNA polymerase III subunits gamma and tau; Provisi	94.92
TIGR00678		188	holB DNA polymerase III, delta' subunit. At positi	94.91
PRK14955		397	DNA polymerase III subunits gamma and tau; Provisi	94.87
cd01130		186	VirB11-like_ATPase Type IV secretory pathway compo	94.85
cd01122		271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	94.84
COG3421		812	Uncharacterized protein conserved in bacteria [Fun	94.83
PF01637		234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	94.81
cd03246		173	ABCC_Protease_Secretion This family represents the	94.81
cd03238		176	ABC_UvrA The excision repair protein UvrA; Nucleot	94.72
cd03214		180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	94.71
PRK14965		576	DNA polymerase III subunits gamma and tau; Provisi	94.67
PRK14950		585	DNA polymerase III subunits gamma and tau; Provisi	94.65
cd03230		173	ABC_DR_subfamily_A This family of ATP-binding prot	94.62
PF13177		162	DNA_pol3_delta2: DNA polymerase III, delta subunit	94.6
cd03216		163	ABC_Carb_Monos_I This family represents the domain	94.58
PRK06067		234	flagellar accessory protein FlaH; Validated	94.57
PRK07471		365	DNA polymerase III subunit delta'; Validated	94.55
PRK04195		482	replication factor C large subunit; Provisional	94.54
PRK11823		446	DNA repair protein RadA; Provisional	94.53
PHA03368		738	DNA packaging terminase subunit 1; Provisional	94.53
TIGR03346		852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	94.44
TIGR00362		405	DnaA chromosomal replication initiator protein Dna	94.42
PF05496		233	RuvB_N: Holliday junction DNA helicase ruvB N-term	94.41
PLN03025		319	replication factor C subunit; Provisional	94.39
PF00931		287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	94.36
TIGR03345		852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	94.35
PRK07133		725	DNA polymerase III subunits gamma and tau; Validat	94.35
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	94.33
PRK05563		559	DNA polymerase III subunits gamma and tau; Validat	94.32
PRK09087		226	hypothetical protein; Validated	94.3
PRK06620		214	hypothetical protein; Validated	94.23
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	94.21
PRK05896		605	DNA polymerase III subunits gamma and tau; Validat	94.21
PF00437		270	T2SE: Type II/IV secretion system protein; InterPr	94.2
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	94.18
PTZ00293		211	thymidine kinase; Provisional	94.17
PF03354		477	Terminase_1: Phage Terminase ; InterPro: IPR005021	94.1
TIGR02868		529	CydC thiol reductant ABC exporter, CydC subunit. T	94.09
PRK14087		450	dnaA chromosomal replication initiation protein; P	94.06
KOG0058		716	consensus Peptide exporter, ABC superfamily [Intra	94.03
PRK08533		230	flagellar accessory protein FlaH; Reviewed	93.99
COG2256		436	MGS1 ATPase related to the helicase subunit of the	93.99
PF03266		168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	93.97
cd03223		166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	93.95
COG1122		235	CbiO ABC-type cobalt transport system, ATPase comp	93.91
TIGR02782		299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	93.91
KOG1805		1100	consensus DNA replication helicase [Replication, r	93.9
PRK14948		620	DNA polymerase III subunits gamma and tau; Provisi	93.89
COG2804		500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	93.86
PRK07940		394	DNA polymerase III subunit delta'; Validated	93.84
COG1435		201	Tdk Thymidine kinase [Nucleotide transport and met	93.79
PRK11054		684	helD DNA helicase IV; Provisional	93.79
PRK14953		486	DNA polymerase III subunits gamma and tau; Provisi	93.78
TIGR03877		237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	93.77
cd03239		178	ABC_SMC_head The structural maintenance of chromos	93.76
PRK12422		445	chromosomal replication initiation protein; Provis	93.75
PRK10919		672	ATP-dependent DNA helicase Rep; Provisional	93.74
PRK13833		323	conjugal transfer protein TrbB; Provisional	93.74
PRK10865		857	protein disaggregation chaperone; Provisional	93.66
PRK14954		620	DNA polymerase III subunits gamma and tau; Provisi	93.57
PRK08451		535	DNA polymerase III subunits gamma and tau; Validat	93.55
cd01393		226	recA_like RecA is a bacterial enzyme which has rol	93.54
TIGR02397		355	dnaX_nterm DNA polymerase III, subunit gamma and t	93.53
KOG2548		653	consensus SWAP mRNA splicing regulator [RNA proces	93.49
COG0542		786	clpA ATP-binding subunits of Clp protease and DnaK	93.46
PF00308		219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	93.43
PF01443		234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	93.42
PRK00440		319	rfc replication factor C small subunit; Reviewed	93.25
COG1132		567	MdlB ABC-type multidrug transport system, ATPase a	93.24
KOG2036		1011	consensus Predicted P-loop ATPase fused to an acet	93.21
PRK14970		367	DNA polymerase III subunits gamma and tau; Provisi	93.19
cd01125		239	repA Hexameric Replicative Helicase RepA. RepA is	93.15
COG1121		254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	93.14
cd03213		194	ABCG_EPDR ABCG transporters are involved in eye pi	93.13
PRK14086		617	dnaA chromosomal replication initiation protein; P	93.13
PRK13342		413	recombination factor protein RarA; Reviewed	93.11
COG1474		366	CDC6 Cdc6-related protein, AAA superfamily ATPase	92.97
COG2812		515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	92.95
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	92.95
PRK14971		614	DNA polymerase III subunits gamma and tau; Provisi	92.94
cd03215		182	ABC_Carb_Monos_II This family represents domain II	92.94
COG0470		325	HolB ATPase involved in DNA replication [DNA repli	92.93
PRK04841		903	transcriptional regulator MalT; Provisional	92.92
KOG0741		744	consensus AAA+-type ATPase [Posttranslational modi	92.9
PF12775		272	AAA_7: P-loop containing dynein motor region D3; P	92.9
PRK11174		588	cysteine/glutathione ABC transporter membrane/ATP-	92.9
COG0541		451	Ffh Signal recognition particle GTPase [Intracellu	92.86
cd03282		204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	92.86
TIGR01547		396	phage_term_2 phage terminase, large subunit, PBSX	92.75
PRK13851		344	type IV secretion system protein VirB11; Provision	92.72
cd03369		207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	92.71
PRK08769		319	DNA polymerase III subunit delta'; Validated	92.69
KOG2373		514	consensus Predicted mitochondrial DNA helicase twi	92.68
TIGR03375		694	type_I_sec_LssB type I secretion system ATPase, Ls	92.67
cd03263		220	ABC_subfamily_A The ABCA subfamily mediates the tr	92.65
PRK13894		319	conjugal transfer ATPase TrbB; Provisional	92.57
PRK11331		459	5-methylcytosine-specific restriction enzyme subun	92.54
cd03255		218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	92.45
PRK06647		563	DNA polymerase III subunits gamma and tau; Validat	92.42
TIGR01074		664	rep ATP-dependent DNA helicase Rep. Designed to id	92.41
cd01121		372	Sms Sms (bacterial radA) DNA repair protein. This	92.32
COG4555		245	NatA ABC-type Na+ transport system, ATPase compone	92.26
COG1134		249	TagH ABC-type polysaccharide/polyol phosphate tran	92.26
TIGR01075		715	uvrD DNA helicase II. Designed to identify uvrD me	92.24
PF05876		557	Terminase_GpA: Phage terminase large subunit (GpA)	92.21
PRK11773		721	uvrD DNA-dependent helicase II; Provisional	92.17
PRK13341		725	recombination factor protein RarA/unknown domain f	92.09
TIGR00602		637	rad24 checkpoint protein rad24. This family is bas	92.05
TIGR01642		509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	92.05
PRK13695		174	putative NTPase; Provisional	92.03
PRK13900		332	type IV secretion system ATPase VirB11; Provisiona	92.02
COG1120		258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	92.0
COG1131		293	CcmA ABC-type multidrug transport system, ATPase c	91.93
cd01131		198	PilT Pilus retraction ATPase PilT. PilT is a nucle	91.92
COG4962		355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	91.92
COG1702		348	PhoH Phosphate starvation-inducible protein PhoH,	91.91
TIGR03522		301	GldA_ABC_ATP gliding motility-associated ABC trans	91.91
PRK13541		195	cytochrome c biogenesis protein CcmA; Provisional	91.9
TIGR02858		270	spore_III_AA stage III sporulation protein AA. Mem	91.89
cd03233		202	ABC_PDR_domain1 The pleiotropic drug resistance (P	91.86
TIGR03689		512	pup_AAA proteasome ATPase. In the Actinobacteria,	91.83
TIGR00635		305	ruvB Holliday junction DNA helicase, RuvB subunit.	91.79
cd01129		264	PulE-GspE PulE/GspE The type II secretory pathway	91.79
PHA00149		331	DNA encapsidation protein	91.71
KOG1132		945	consensus Helicase of the DEAD superfamily [Replic	91.71
PTZ00243		1560	ABC transporter; Provisional	91.71
cd03227		162	ABC_Class2 ABC-type Class 2 contains systems invol	91.68
cd03232		192	ABC_PDR_domain2 The pleiotropic drug resistance-li	91.67
COG1618		179	Predicted nucleotide kinase [Nucleotide transport	91.65
TIGR02655		484	circ_KaiC circadian clock protein KaiC. Members of	91.6
PRK00080		328	ruvB Holliday junction DNA helicase RuvB; Reviewed	91.58
COG1119		257	ModF ABC-type molybdenum transport system, ATPase	91.52
PRK06964		342	DNA polymerase III subunit delta'; Validated	91.49
TIGR02525		372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	91.49
PF13555		62	AAA_29: P-loop containing region of AAA domain	91.48
KOG2228		408	consensus Origin recognition complex, subunit 4 [R	91.48
PF12846		304	AAA_10: AAA-like domain	91.38
TIGR02012		321	tigrfam_recA protein RecA. This model describes or	91.36
COG4608		268	AppF ABC-type oligopeptide transport system, ATPas	91.36
COG3973		747	Superfamily I DNA and RNA helicases [General funct	91.36
TIGR03864		236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	91.35
PRK06305		451	DNA polymerase III subunits gamma and tau; Validat	91.34
cd03237		246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	91.34
cd03226		205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	91.22
TIGR01271		1490	CFTR_protein cystic fibrosis transmembrane conduct	91.2
TIGR01189		198	ccmA heme ABC exporter, ATP-binding protein CcmA.	91.13
PRK15177		213	Vi polysaccharide export ATP-binding protein VexC;	91.11
cd01123		235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	91.09
cd03289		275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	91.08
TIGR02688		449	conserved hypothetical protein TIGR02688. Members	91.06
PRK08699		325	DNA polymerase III subunit delta'; Validated	91.05
TIGR01277		213	thiQ thiamine ABC transporter, ATP-binding protein	91.02
PRK13657		588	cyclic beta-1,2-glucan ABC transporter; Provisiona	91.01
PF03237		384	Terminase_6: Terminase-like family; InterPro: IPR0	90.91
PF14532		138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	90.89
cd03258		233	ABC_MetN_methionine_transporter MetN (also known a	90.88
PRK14257		329	phosphate ABC transporter ATP-binding protein; Pro	90.84
TIGR00957		1522	MRP_assoc_pro multi drug resistance-associated pro	90.84
PLN03232		1495	ABC transporter C family member; Provisional	90.8
PF00265		176	TK: Thymidine kinase; InterPro: IPR001267 Thymidin	90.79
TIGR02857		529	CydD thiol reductant ABC exporter, CydD subunit. U	90.79
PRK11160		574	cysteine/glutathione ABC transporter membrane/ATP-	90.77
TIGR02673		214	FtsE cell division ATP-binding protein FtsE. This	90.7
TIGR01166		190	cbiO cobalt transport protein ATP-binding subunit.	90.69
PRK09354		349	recA recombinase A; Provisional	90.67
KOG0738		491	consensus AAA+-type ATPase [Posttranslational modi	90.67
COG3854		308	SpoIIIAA ncharacterized protein conserved in bacte	90.65
TIGR03608		206	L_ocin_972_ABC putative bacteriocin export ABC tra	90.6
KOG1131		755	consensus RNA polymerase II transcription initiati	90.54
PLN03130		1622	ABC transporter C family member; Provisional	90.54
PRK13538		204	cytochrome c biogenesis protein CcmA; Provisional	90.54
TIGR01420		343	pilT_fam pilus retraction protein PilT. This model	90.47
KOG1969		877	consensus DNA replication checkpoint protein CHL12	90.46
TIGR02788		308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	90.43
cd03249		238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	90.41
cd03225		211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	90.39
PRK11176		582	lipid transporter ATP-binding/permease protein; Pr	90.33
PRK10436		462	hypothetical protein; Provisional	90.32
PRK06871		325	DNA polymerase III subunit delta'; Validated	90.32
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	90.3
cd03248		226	ABCC_TAP TAP, the Transporter Associated with Anti	90.27
cd03254		229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	90.25
PRK08058		329	DNA polymerase III subunit delta'; Validated	90.25
cd03259		213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	90.23
KOG4368		757	consensus Predicted RNA binding protein, contains	90.17
PRK10584		228	putative ABC transporter ATP-binding protein YbbA;	90.16
TIGR01846		694	type_I_sec_HlyB type I secretion system ABC transp	90.1
cd03245		220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	90.08
CHL00176		638	ftsH cell division protein; Validated	90.08
TIGR02982		220	heterocyst_DevA ABC exporter ATP-binding subunit,	90.04
PHA03311		828	helicase-primase subunit BBLF4; Provisional	89.99
CHL00095		821	clpC Clp protease ATP binding subunit	89.94
PRK07399		314	DNA polymerase III subunit delta'; Validated	89.92
TIGR01192		585	chvA glucan exporter ATP-binding protein. This mod	89.89
TIGR01642		509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	89.87
cd03276		198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	89.85
TIGR02974		329	phageshock_pspF psp operon transcriptional activat	89.82
cd03219		236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	89.77
TIGR00960		216	3a0501s02 Type II (General) Secretory Pathway (IIS	89.7
TIGR01193		708	bacteriocin_ABC ABC-type bacteriocin transporter.	89.68
PRK10789		569	putative multidrug transporter membrane\ATP-bindin	89.67
cd03300		232	ABC_PotA_N PotA is an ABC-type transporter and the	89.66
PHA00729		226	NTP-binding motif containing protein	89.63
COG2255		332	RuvB Holliday junction resolvasome, helicase subun	89.62
COG0593		408	DnaA ATPase involved in DNA replication initiation	89.55
PF10443		431	RNA12: RNA12 protein; InterPro: IPR018850 Mitochon	89.51
cd03251		234	ABCC_MsbA MsbA is an essential ABC transporter, cl	89.5

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=6.8e-206  Score=1761.17  Aligned_cols=874  Identities=65%  Similarity=1.088  Sum_probs=827.3

Q ss_pred             chhhcccccCCcccCCCCCCccCCChhHHHHHHHHHHHHHhhhcCCcchHHhhhhhhhhccChhHHHHHHHhhcCCcccc
Q 000790          362 DRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEERQLLRSGAVRGT  441 (1283)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~we~~~~~~~g~~~~~  441 (1283)
                      ||+|||+||+   +|+.+| ||...+     +|+++.++.+                .++.||++||.|||++|||+++.
T Consensus       169 dR~WYdnde~---~d~~~n-pf~~~~-----~E~~l~~~~~----------------ki~~dn~~we~nrl~~sgvv~~~  223 (1042)
T KOG0924|consen  169 DREWYDNDEG---GDEVHN-PFSELS-----REAELLEKIQ----------------KINNDNALWETNRLLTSGVVQRM  223 (1042)
T ss_pred             chhhhhcCCc---cccccC-chhcch-----hHHHHHHHHH----------------hhcchhhhhhhhcccchhhhhcc
Confidence            7999999999   566677 665433     6778877542                27889999999999999999999


Q ss_pred             CCCCCCCccccceeEEeecCCCCcccccchhhcccCCCccCCCCCCChHHHHHhhcChhHHHHHHHHHHHHHHhhhHhhh
Q 000790          442 ELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQNKSRQRFWELA  521 (1283)
Q Consensus       442 ~~~~~~~~~~e~~~~~~~~~~~p~fl~g~~~~~~~~~~~~~~k~~~~~~~~~a~~~s~~~~~~~~~~~~~k~~~~~~~~~  521 (1283)
                      +|..+|+.+++.+  ++||+++||||+|+.+++++.+||.||+||++++|+.|++||.+|+++|++++.+|..+..|+++
T Consensus       224 e~~~~f~~~e~~~--llv~~i~~~fld~r~~~~k~~~~v~pv~d~~sd~a~~a~~gs~lv~~~r~~~~~~k~~~~~~~~~  301 (1042)
T KOG0924|consen  224 EVISDFLSDEARE--LLVHNIVPPFLDGREVFTKQAEPVIPVRDPTSDLAISARRGSKLVRERREKEERKKAQKKHWKLA  301 (1042)
T ss_pred             cccCccchhhHHH--hhhhcccCCccccceeeecccccccccCCCchhhhhhhhccccHHHHHHHhhhhhhhhhhhhhhc
Confidence            9999998877666  89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccccccccccccccccCccccccchhhhhhhhccccchhhhhhHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 000790          522 GSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIREN  601 (1283)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~~LPi~~~Q~eil~~I~~~  601 (1283)
                      +++|||++|+++..+          +++..+++...+|..|+++.+..+.|+..+.+.+||++|||+.++.+++..|..|
T Consensus       302 ~~~lgn~~glek~~~----------ed~~~~~~~~~~~a~h~k~~~a~~~fa~~k~i~eqrq~LPvf~~R~~ll~~ir~n  371 (1042)
T KOG0924|consen  302 GTALGNVMGLEKKND----------EDGKVAYRGSVKFASHMKKSEAVSEFASKKSIREQRQYLPVFACRDQLLSVIREN  371 (1042)
T ss_pred             chhhccccccccCcc----------cccccccccchhhhhccccccccccccccchHHHHHhhcchHHHHHHHHHHHhhC
Confidence            999999999987643          4556777788889999998888899999999999999999999999999999999


Q ss_pred             CeEEEEccCCCChHHHHHHHHHHhcccCCCEEEEecchHHHHHHHHHHHHHHhccccCCeeeEEEeeeeccCCCceEEEe
Q 000790          602 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYM  681 (1283)
Q Consensus       602 qvvII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~LA~qvakrVa~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~  681 (1283)
                      ++|||+|+||||||||++|||++.+|..+|.|+||||+|++|++||++|++||+..+|..|||.|||++++++.|.|.||
T Consensus       372 ~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~Ikym  451 (1042)
T KOG0924|consen  372 QVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKIKYM  451 (1042)
T ss_pred             cEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCceeEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHccCCCCCCCceEEEcCCCcCCcchhHHHHHHHHHHHhcCCceEEEeccCcCHHHHHHHhCCCCeEeecCcc
Q 000790          682 TDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRT  761 (1283)
Q Consensus       682 T~G~LLr~ll~d~~L~~~s~IIIDEaHERsl~tD~ll~lLk~il~~r~dlklIlmSATld~e~fa~~f~~~pvi~i~gr~  761 (1283)
                      |+|+||++.+.+..|.+|++|||||||||++++|+|+++||.++..+.++|+|++|||||+++|++|||+||.|.|+||+
T Consensus       452 TDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p~f~IpGRT  531 (1042)
T KOG0924|consen  452 TDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCPQFTIPGRT  531 (1042)
T ss_pred             ccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCceeeecCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeeecCCChhhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCC
Q 000790          762 FPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLP  841 (1283)
Q Consensus       762 ~pV~i~y~~~~~~dyv~~~v~~~l~i~~~~~~G~ILVFl~g~~eIe~l~~~L~e~l~~l~~~~~~~~~~l~Il~LHs~L~  841 (1283)
                      |||++.|.+.+++||+++++++++.||+..++|+||||++|+++|+.+|..|.+.+.++....   ...+.|+|+|++||
T Consensus       532 yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~---~~~L~vlpiYSQLp  608 (1042)
T KOG0924|consen  532 YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAP---TTDLAVLPIYSQLP  608 (1042)
T ss_pred             cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCC---CCceEEEeehhhCc
Confidence            999999999999999999999999999999999999999999999999999999998875432   24899999999999


Q ss_pred             HHHHHHHHhHhcCCCeeEEEecCcccccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCC
Q 000790          842 ADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPG  921 (1283)
Q Consensus       842 ~~er~~I~~~f~~G~rKVLVATnIAEtGIdIp~V~~VIDsGl~K~~~yD~~~g~~~L~~~PiS~as~~QRaGRAGR~g~G  921 (1283)
                      .+.|.+||++.+.|.+|||||||||||+||||+|.|||||||+|.++|||+.||++|+++|||+|++.||+|||||+|||
T Consensus       609 ~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG  688 (1042)
T KOG0924|consen  609 ADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPG  688 (1042)
T ss_pred             hhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecChhhhhhhcCCCCcchhhccchhHHHHHHhhcccCcccCCCCCCCCChhhHHHHHHHHHHhcccccCCCCCHHH
Q 000790          922 TCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLG 1001 (1283)
Q Consensus       922 ~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~Lk~lgi~~l~~f~fldpP~~~~i~~al~~L~~lgaLd~~g~LT~lG 1001 (1283)
                      .||||||+..|.++|.+.++|||||+||.++||+||+||+++++.|+||||||.+.+..||++||.|||||+.|.||++|
T Consensus       689 ~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~g~LT~lG  768 (1042)
T KOG0924|consen  689 TCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNTGQLTPLG  768 (1042)
T ss_pred             ceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccCCccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCChHHHHHHHhhhhcCchHHHHHHHHHhcCCCcccCChhhHHHHHHHHHhhcccCccHHHHHHHHHHHHhhcc
Q 000790         1002 WKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQY 1081 (1283)
Q Consensus      1002 ~~ma~lPldp~lak~Ll~~~~~gc~~e~l~I~a~ls~~~~f~~p~~~~~~~~~~r~~f~~~~sDhltll~vf~~w~~~~~ 1081 (1283)
                      +.|++|||||.|+||||.|+.+||++|||+||+|||++.+|++|+++.++++++|+||++++||||||||||++|+++++
T Consensus       769 ~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~~~sDhLTlLNVf~qw~~~~~  848 (1042)
T KOG0924|consen  769 RKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQVPESDHLTLLNVFNQWRKNKY  848 (1042)
T ss_pred             HHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcCCCCchhhHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhcccchhhhhcccceeeeecCCcceeeCC
Q 000790         1082 RGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHP 1161 (1283)
Q Consensus      1082 ~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~~~~~~i~~~l~~g~~~nvA~~~~~g~y~~~~~~~~v~lHP 1161 (1283)
                      +..||++|||+.++|++|+++|.||+.||+.+++++.|| .+||+|++|||+|||+|+|++++.|.|+++++|.+|+|||
T Consensus       849 ~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~-~dwdivrKCIcs~~fhn~Arlkg~g~YV~~~tg~~c~lHP  927 (1042)
T KOG0924|consen  849 SSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISS-DDWDIVRKCICSAYFHNAARLKGIGEYVNLSTGIPCHLHP  927 (1042)
T ss_pred             chhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccC-chHHHHHHHHHHHHHHHHHHhccCceEEEccCCcceeecc
Confidence            999999999999999999999999999999999999999 8999999999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCceeeehhhcchhhhhhhccccCHHHHHhhCCcccccccCchhHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 000790         1162 SSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSMLEHKKKQKESKTAMEEEMENLRKIQ 1241 (1283)
Q Consensus      1162 sS~l~~~~~~p~~vvy~el~~tsk~y~r~vt~I~p~wL~e~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 (1283)
                      +|+|+++ +.|+||||||+++|+|+||+|||.|+|+||+|++|+||++++...+  ++|..+++++..||.+|.......
T Consensus       928 sS~L~g~-y~p~Yivyhel~~T~keym~cvT~v~~~wl~E~gp~~y~ik~~~~s--e~k~~~~ed~~~~e~~~~~~~~~~ 1004 (1042)
T KOG0924|consen  928 SSVLHGL-YTPDYIVYHELLMTTKEYMQCVTSVSPEWLAELGPMFYSIKEAVTS--EHKHPVVEDGSDMEEEMFKAARDL 1004 (1042)
T ss_pred             hHhhhcC-CCCCeeeehHHHHhHHHHHHHHhhCCHHHHHHhCceeEeccccccc--hhccccccccchhhhhHHHHHHHH
Confidence            9999998 8999999999999999999999999999999999999999987655  888899999999999998887666


Q ss_pred             HHHHHHHHHHHHHHhhhccceeeccCCCCCCCCccCccCC
Q 000790         1242 ADEERENKAKEREKRVKERQQVSMPGWRQGSTTYLRPKKF 1281 (1283)
Q Consensus      1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1281 (1283)
                      ...+.+.+..... ...+..+|.+||.+++. ++++|+|+
T Consensus      1005 ~~~~~~~~~~~~~-~~~~~~k~~~~~~~~e~-~~k~~~r~ 1042 (1042)
T KOG0924|consen 1005 VGRRLESKKASDK-NYKRSTKINEPGEKKEE-PPKKPRRI 1042 (1042)
T ss_pred             HHhhccchhcccc-chhhhhhhcCccccccC-CCCCCCCC
Confidence            6554444443332 25567899999999987 55666663

>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO)	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00847 HA2 Helicase associated domain (HA2) Add an annotation	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>PRK13889 conjugal transfer relaxase TraA; Provisional	Back alignment and domain information

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit	Back alignment and domain information

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>KOG1803 consensus DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>PRK13826 Dtr system oriT relaxase; Provisional	Back alignment and domain information

>KOG2340 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI	Back alignment and domain information

>PRK14974 cell division protein FtsY; Provisional	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length	Back alignment and domain information

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>PF05729 NACHT: NACHT domain	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>PRK10416 signal recognition particle-docking protein FtsY; Provisional	Back alignment and domain information

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins	Back alignment and domain information

>PF13173 AAA_14: AAA domain	Back alignment and domain information

>PHA03333 putative ATPase subunit of terminase; Provisional	Back alignment and domain information

>PRK07952 DNA replication protein DnaC; Validated	Back alignment and domain information

>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>TIGR00064 ftsY signal recognition particle-docking protein FtsY	Back alignment and domain information

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>PRK09183 transposase/IS protein; Provisional	Back alignment and domain information

>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]	Back alignment and domain information

>PRK06893 DNA replication initiation factor; Validated	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>PRK06835 DNA replication protein DnaC; Validated	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>cd01120 RecA-like_NTPases RecA-like NTPases	Back alignment and domain information

>PRK08903 DnaA regulatory inactivator Hda; Validated	Back alignment and domain information

>TIGR01425 SRP54_euk signal recognition particle protein SRP54	Back alignment and domain information

>TIGR00959 ffh signal recognition particle protein	Back alignment and domain information

>PRK00771 signal recognition particle protein Srp54; Provisional	Back alignment and domain information

>PRK07764 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif	Back alignment and domain information

>PRK05642 DNA replication initiation factor; Validated	Back alignment and domain information

>PHA02533 17 large terminase protein; Provisional	Back alignment and domain information

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR03499 FlhF flagellar biosynthetic protein FlhF	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>PRK08691 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK12377 putative replication protein; Provisional	Back alignment and domain information

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK07994 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK10867 signal recognition particle protein; Provisional	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis	Back alignment and domain information

>PRK08939 primosomal protein DnaI; Reviewed	Back alignment and domain information

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules	Back alignment and domain information

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes	Back alignment and domain information

>PRK06921 hypothetical protein; Provisional	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>PRK06645 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins	Back alignment and domain information

>PRK14712 conjugal transfer nickase/helicase TraI; Provisional	Back alignment and domain information

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth	Back alignment and domain information

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids	Back alignment and domain information

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI	Back alignment and domain information

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]	Back alignment and domain information

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN	Back alignment and domain information

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>PRK09111 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]	Back alignment and domain information

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK05707 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK13709 conjugal transfer nickase/helicase TraI; Provisional	Back alignment and domain information

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK00411 cdc6 cell division control protein 6; Reviewed	Back alignment and domain information

>PHA02544 44 clamp loader, small subunit; Provisional	Back alignment and domain information

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment	Back alignment and domain information

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed	Back alignment and domain information

>PTZ00112 origin recognition complex 1 protein; Provisional	Back alignment and domain information

>PRK14088 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR00678 holB DNA polymerase III, delta' subunit	Back alignment and domain information

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases	Back alignment and domain information

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases	Back alignment and domain information

>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP	Back alignment and domain information

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain	Back alignment and domain information

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion	Back alignment and domain information

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea	Back alignment and domain information

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity	Back alignment and domain information

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A	Back alignment and domain information

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)	Back alignment and domain information

>PRK06067 flagellar accessory protein FlaH; Validated	Back alignment and domain information

>PRK07471 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK04195 replication factor C large subunit; Provisional	Back alignment and domain information

>PRK11823 DNA repair protein RadA; Provisional	Back alignment and domain information

>PHA03368 DNA packaging terminase subunit 1; Provisional	Back alignment and domain information

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB	Back alignment and domain information

>TIGR00362 DnaA chromosomal replication initiator protein DnaA	Back alignment and domain information

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []	Back alignment and domain information

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family	Back alignment and domain information

>PRK07133 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>PRK05563 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK09087 hypothetical protein; Validated	Back alignment and domain information

>PRK06620 hypothetical protein; Validated	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PRK05896 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PTZ00293 thymidine kinase; Provisional	Back alignment and domain information

>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase)	Back alignment and domain information

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit	Back alignment and domain information

>PRK14087 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK08533 flagellar accessory protein FlaH; Reviewed	Back alignment and domain information

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]	Back alignment and domain information

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []	Back alignment and domain information

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome	Back alignment and domain information

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB	Back alignment and domain information

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PRK07940 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK11054 helD DNA helicase IV; Provisional	Back alignment and domain information

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family	Back alignment and domain information

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms	Back alignment and domain information

>PRK12422 chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK10919 ATP-dependent DNA helicase Rep; Provisional	Back alignment and domain information

>PRK13833 conjugal transfer protein TrbB; Provisional	Back alignment and domain information

>PRK10865 protein disaggregation chaperone; Provisional	Back alignment and domain information

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08451 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response	Back alignment and domain information

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau	Back alignment and domain information

>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]	Back alignment and domain information

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication	Back alignment and domain information

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases	Back alignment and domain information

>PRK00440 rfc replication factor C small subunit; Reviewed	Back alignment and domain information

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	Back alignment and domain information

>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]	Back alignment and domain information

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd01125 repA Hexameric Replicative Helicase RepA	Back alignment and domain information

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)	Back alignment and domain information

>PRK14086 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK13342 recombination factor protein RarA; Reviewed	Back alignment and domain information

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)	Back alignment and domain information

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK04841 transcriptional regulator MalT; Provisional	Back alignment and domain information

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A	Back alignment and domain information

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]	Back alignment and domain information

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes	Back alignment and domain information

>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family	Back alignment and domain information

>PRK13851 type IV secretion system protein VirB11; Provisional	Back alignment and domain information

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)	Back alignment and domain information

>PRK08769 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]	Back alignment and domain information

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family	Back alignment and domain information

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds	Back alignment and domain information

>PRK13894 conjugal transfer ATPase TrbB; Provisional	Back alignment and domain information

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional	Back alignment and domain information

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)	Back alignment and domain information

>PRK06647 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>TIGR01074 rep ATP-dependent DNA helicase Rep	Back alignment and domain information

>cd01121 Sms Sms (bacterial radA) DNA repair protein	Back alignment and domain information

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]	Back alignment and domain information

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>TIGR01075 uvrD DNA helicase II	Back alignment and domain information

>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA	Back alignment and domain information

>PRK11773 uvrD DNA-dependent helicase II; Provisional	Back alignment and domain information

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed	Back alignment and domain information

>TIGR00602 rad24 checkpoint protein rad24	Back alignment and domain information

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>PRK13695 putative NTPase; Provisional	Back alignment and domain information

>PRK13900 type IV secretion system ATPase VirB11; Provisional	Back alignment and domain information

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>cd01131 PilT Pilus retraction ATPase PilT	Back alignment and domain information

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	Back alignment and domain information

>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	Back alignment and domain information

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA	Back alignment and domain information

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>TIGR02858 spore_III_AA stage III sporulation protein AA	Back alignment and domain information

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters	Back alignment and domain information

>TIGR03689 pup_AAA proteasome ATPase	Back alignment and domain information

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit	Back alignment and domain information

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)	Back alignment and domain information

>PHA00149 DNA encapsidation protein	Back alignment and domain information

>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>PTZ00243 ABC transporter; Provisional	Back alignment and domain information

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport	Back alignment and domain information

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters	Back alignment and domain information

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR02655 circ_KaiC circadian clock protein KaiC	Back alignment and domain information

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed	Back alignment and domain information

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK06964 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ	Back alignment and domain information

>PF13555 AAA_29: P-loop containing region of AAA domain	Back alignment and domain information

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]	Back alignment and domain information

>PF12846 AAA_10: AAA-like domain	Back alignment and domain information

>TIGR02012 tigrfam_recA protein RecA	Back alignment and domain information

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]	Back alignment and domain information

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system	Back alignment and domain information

>PRK06305 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor	Back alignment and domain information

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota	Back alignment and domain information

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)	Back alignment and domain information

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA	Back alignment and domain information

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional	Back alignment and domain information

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B	Back alignment and domain information

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2	Back alignment and domain information

>TIGR02688 conserved hypothetical protein TIGR02688	Back alignment and domain information

>PRK08699 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional	Back alignment and domain information

>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []	Back alignment and domain information

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H	Back alignment and domain information

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport	Back alignment and domain information

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)	Back alignment and domain information

>PLN03232 ABC transporter C family member; Provisional	Back alignment and domain information

>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2	Back alignment and domain information

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit	Back alignment and domain information

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	Back alignment and domain information

>TIGR02673 FtsE cell division ATP-binding protein FtsE	Back alignment and domain information

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit	Back alignment and domain information

>PRK09354 recA recombinase A; Provisional	Back alignment and domain information

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group	Back alignment and domain information

>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PLN03130 ABC transporter C family member; Provisional	Back alignment and domain information

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>TIGR01420 pilT_fam pilus retraction protein PilT	Back alignment and domain information

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11	Back alignment and domain information

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1	Back alignment and domain information

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota	Back alignment and domain information

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional	Back alignment and domain information

>PRK10436 hypothetical protein; Provisional	Back alignment and domain information

>PRK06871 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules	Back alignment and domain information

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein	Back alignment and domain information

>PRK08058 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup	Back alignment and domain information

>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]	Back alignment and domain information

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional	Back alignment and domain information

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family	Back alignment and domain information

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters	Back alignment and domain information

>CHL00176 ftsH cell division protein; Validated	Back alignment and domain information

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family	Back alignment and domain information

>PHA03311 helicase-primase subunit BBLF4; Provisional	Back alignment and domain information

>CHL00095 clpC Clp protease ATP binding subunit	Back alignment and domain information

>PRK07399 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR01192 chvA glucan exporter ATP-binding protein	Back alignment and domain information

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains	Back alignment and domain information

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF	Back alignment and domain information

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine	Back alignment and domain information

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein	Back alignment and domain information

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter	Back alignment and domain information

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional	Back alignment and domain information

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D	Back alignment and domain information

>PHA00729 NTP-binding motif containing protein	Back alignment and domain information

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]	Back alignment and domain information

>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]	Back alignment and domain information

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1283
3kx2_B		767	Crystal Structure Of Prp43p In Complex With Adp Len		1e-152
2xau_A		773	Crystal Structure Of The Prp43p Deah-Box Rna Helica		1e-152
3i4u_A		270	Crystal Structure Analysis Of A Helicase Associated		5e-61
3llm_A		235	Crystal Structure Analysis Of A Rna Helicase Length		8e-27

>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767

Back alignment and structure

Iteration: 1

Score = 537 bits (1384), Expect = e-152, Method: Compositional matrix adjust. Identities = 275/646 (42%), Positives = 403/646 (62%), Gaps = 21/646 (3%) Query: 582 RQYLPIFSVRDELLQVIRENQXXXXXGETGSGKTTQLTQYLLED--GYTTNGIVGCTQPR 639 R+ LP+ + RDE L++ + NQ GETGSGKTTQ+ Q++L D + N V CTQPR Sbjct: 90 RRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149 Query: 640 RVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKY 699 RVAAMSVA+RV+EEMD +LG++VGY+IRFE+ T T++KYMTDG+LLRE ++D DL +Y Sbjct: 150 RVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRY 209 Query: 700 RVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPG 759 I++DEAHER+L+TD+L G+LK+VV RR D K+I+ SATL+A+KF +F P+ +PG Sbjct: 210 SCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPG 269 Query: 760 RTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQ 819 RT+PV Y+ DY+++A++ + IH T GDIL+F+TG+DEIE A + +Q Sbjct: 270 RTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQ 329 Query: 820 LISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGT-----RKCIVATNIAETSLTVDG 874 L+ L + P+Y LP Q +IFE A E RK +++TNIAETSLT+DG Sbjct: 330 LVREEG--CGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDG 387 Query: 875 IFYVIDTGYGKMKVYNPKMGMDALQVFPVSXXXXXXXXXXXXXXXXXXCYRLYTESAYLN 934 I YV+D G+ K KVYNP++ +++L V P+S C+RLYTE A+ Sbjct: 388 IVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQK 447 Query: 935 EMLPSPVPEIQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQENILNSMYQLWVLGALNNV 994 E++ PEI R+NL + V FDFMDPP E ++ ++ +L L L++ Sbjct: 448 ELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDE 507 Query: 995 GALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDA 1054 G LT LG +FPLDP LA ML+ + C E+LTIV+MLSVP+VF RP + +D Sbjct: 508 GNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADD 567 Query: 1055 AREKFFVQESDHLTLLYVYQQWKE---HQYR-GDWCEEHYLHVKSLRKAREVRSQLLDIL 1110 A+ F + DH+TLL VY +K ++Y WC +HYL+ +SL A +RSQL ++ Sbjct: 568 AKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLM 627 Query: 1111 KTLKIPLTSSGHD----FDVVRKAICSAYFHNAARLK-GVGEYINCRNGMPCHLHPSSAI 1165 + L ++ ++ FD +RKA+ S +F A+ + G YI ++ +HPS+ Sbjct: 628 NRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTV- 686 Query: 1166 YGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKD 1211 LG+ E+V+Y+E +LT+K Y++ T+V P+WL E+ P ++ + + Sbjct: 687 --LGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSN 730

PyMOL of 3kx2

>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773

Back alignment and structure

>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270

Back alignment and structure

>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase Length = 235

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1283
2xau_A		773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	0.0
3i4u_A		270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	1e-142
3llm_A		235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	1e-104
2v6i_A		431	RNA helicase; membrane, hydrolase, transmembrane,	1e-101
2z83_A		459	Helicase/nucleoside triphosphatase; hydrolase, mem	1e-100
2jlq_A		451	Serine protease subunit NS3; ribonucleoprotein, nu	3e-97
3o8b_A		666	HCV NS3 protease/helicase; ntpase, RNA, translocat	6e-89
2whx_A		618	Serine protease/ntpase/helicase NS3; transcription	8e-87
1yks_A		440	Genome polyprotein [contains: flavivirin protease	2e-83
2wv9_A		673	Flavivirin protease NS2B regulatory subunit, FLAV	2e-82
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-21
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-13
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	1e-04
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	2e-04
3pgw_S		437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	9e-04

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773	Back alignment and structure

 Score = 1135 bits (2937), Expect = 0.0
 Identities = 312/795 (39%), Positives = 469/795 (58%), Gaps = 43/795 (5%)

Query: 475  KQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQNKSRQRFWELAGSQMGNILGVKKT 534
            ++     P    TS     +     L ++      +        E  G Q          
Sbjct: 5    RRFSSEHPDPVETSIPEQAAEIAEELSKQHPLPSEEPLVHHDAGEFKGLQRH-------- 56

Query: 535  AEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDEL 594
                 A+ A   E G+I+     +F+             K   + + R+ LP+ + RDE 
Sbjct: 57   --HTSAEEAQKLEDGKINPFTGREFTP------------KYVDILKIRRELPVHAQRDEF 102

Query: 595  LQVIRENQVVVVVGETGSGKTTQLTQYLLED--GYTTNGIVGCTQPRRVAAMSVAKRVSE 652
            L++ + NQ++V VGETGSGKTTQ+ Q++L D   +  N  V CTQPRRVAAMSVA+RV+E
Sbjct: 103  LKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAE 162

Query: 653  EMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSL 712
            EMD +LG++VGY+IRFE+ T   T++KYMTDG+LLRE ++D DL +Y  I++DEAHER+L
Sbjct: 163  EMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTL 222

Query: 713  STDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTP 772
            +TD+L G+LK+VV RR D K+I+ SATL+A+KF  +F   P+  +PGRT+PV   Y+   
Sbjct: 223  ATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEF 282

Query: 773  CEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELL 832
              DY+++A++  + IH T   GDIL+F+TG+DEIE A   +    +QL+         L 
Sbjct: 283  QRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVRE--EGCGPLS 340

Query: 833  ILPIYSQLPADLQAKIFEKAKEG-----TRKCIVATNIAETSLTVDGIFYVIDTGYGKMK 887
            + P+Y  LP   Q +IFE A E       RK +++TNIAETSLT+DGI YV+D G+ K K
Sbjct: 341  VYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQK 400

Query: 888  VYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRT 947
            VYNP++ +++L V P+S+A+A QRAGRAGRT PG C+RLYTE A+  E++    PEI R+
Sbjct: 401  VYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRS 460

Query: 948  NLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEF 1007
            NL + VL LK L ID+L+ FDFMDPP  E ++ ++ +L  L  L++ G LT LG    +F
Sbjct: 461  NLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQF 520

Query: 1008 PLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHL 1067
            PLDP LA ML+   +  C  E+LTIV+MLSVP+VF RP    + +D A+  F   + DH+
Sbjct: 521  PLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHI 580

Query: 1068 TLLYVYQQWKEHQY----RGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHD 1123
            TLL VY  +K  +        WC +HYL+ +SL  A  +RSQL  ++    + L ++ ++
Sbjct: 581  TLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYE 640

Query: 1124 ----FDVVRKAICSAYFHNAARLK-GVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYH 1178
                FD +RKA+ S +F   A+ + G   YI  ++     +HPS+    LG+  E+V+Y+
Sbjct: 641  SPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTV---LGHDAEWVIYN 697

Query: 1179 ELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSMLEHKKKQKESKTAMEEEMENLR 1238
            E +LT+K Y++  T+V P+WL E+ P ++ + +     ++   ++ + K     E++  +
Sbjct: 698  EFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQKGDVKLSLERIKEKVDRLNELKQGK 757

Query: 1239 KIQADEERENKAKER 1253
              +  +  +      
Sbjct: 758  NKKKSKHSKKHHHHH 772

PyMOL of 2xau

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270	Back alignment and structure

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235	Back alignment and structure

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431	Back alignment and structure

>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459	Back alignment and structure

>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451	Back alignment and structure

>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666	Back alignment and structure

>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618	Back alignment and structure

>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440	Back alignment and structure

>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1283
d1yksa2		299	c.37.1.14 (A:325-623) YFV helicase domain {Yellow	2e-54
d2bmfa2		305	c.37.1.14 (A:178-482) Dengue virus helicase {Dengu	2e-52
d1a1va1		136	c.37.1.14 (A:190-325) HCV helicase domain {Human h	7e-28
d1yksa1		140	c.37.1.14 (A:185-324) YFV helicase domain {Yellow	4e-16
d2p6ra3		202	c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus	3e-05
d1wp9a2		286	c.37.1.19 (A:201-486) putative ATP-dependent RNA h	7e-05
d2fz4a1		206	c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc	0.002
d1lkxa_		684	c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli	0.003
d1br2a2		710	c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick	0.004
d2mysa2		794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	0.004
d1w7ja2		730	c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick	0.004

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

 Score =  189 bits (482), Expect = 2e-54
 Identities = 43/348 (12%), Positives = 88/348 (25%), Gaps = 60/348 (17%)

Query: 757  IPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKER 816
             P     +  + +  P E +            I +       F+           +L++ 
Sbjct: 6    FPHSNGEIEDVQTDIPSEPWNTGHDW------ILADKRPTAWFLPSIRAANVMAASLRKA 59

Query: 817  MEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIF 876
                            ++ +  +       + +   K+     I+AT+IAE    +  + 
Sbjct: 60   -------------GKSVVVLNRKTFE----REYPTIKQKKPDFILATDIAEMGANLC-VE 101

Query: 877  YVIDTGY-GKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNE 935
             V+D     K  + +    +       +S ++A QR GR GR  P      Y    Y   
Sbjct: 102  RVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRN-PNRDGDSYY---YSEP 157

Query: 936  MLPSPVPEIQRTN----LGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGAL 991
               +    +        L N+ +    +     ++       P E  L    +      +
Sbjct: 158  TSENNAHHVCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFRELV 217

Query: 992  NNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKD-RAE 1050
             N      L W++ +  L     K                          F  P++    
Sbjct: 218  RNCDLPVWLSWQVAKAGLKTNDRKWC------------------------FEGPEEHEIL 253

Query: 1051 ESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRK 1098
                   K          L   +    E           ++     R+
Sbjct: 254  NDSGETVKCRAPGGAKKPLRPRW--CDERVSSDQSALSEFIKFAEGRR 299

PyMOL of d1yksa2

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305	Back information, alignment and structure

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136	Back information, alignment and structure

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140	Back information, alignment and structure

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202	Back information, alignment and structure

>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286	Back information, alignment and structure

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206	Back information, alignment and structure

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684	Back information, alignment and structure

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710	Back information, alignment and structure

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794	Back information, alignment and structure

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1283
d2bmfa2		305	Dengue virus helicase {Dengue virus type 2 [TaxId:	100.0
d1yksa2		299	YFV helicase domain {Yellow fever virus [TaxId: 11	100.0
d2j0sa1		222	Probable ATP-dependent RNA helicase DDX48 {Human (	99.88
d2g9na1		218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	99.88
d1veca_		206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	99.88
d1t6na_		207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	99.86
d1qdea_		212	Initiation factor 4a {Baker's yeast (Saccharomyces	99.86
d2p6ra3		202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	99.86
d1hv8a1		208	Putative DEAD box RNA helicase {Archaeon Methanoco	99.85
d1oywa3		200	RecQ helicase domain {Escherichia coli [TaxId: 562	99.85
d1s2ma2		171	Putative ATP-dependent RNA helicase DHH1 {Baker's	99.84
d1s2ma1		206	Putative ATP-dependent RNA helicase DHH1 {Baker's	99.83
d2j0sa2		168	Probable ATP-dependent RNA helicase DDX48 {Human (	99.82
d1wrba1		238	putative ATP-dependent RNA helicase VlgB {Flatworm	99.82
d1hv8a2		155	Putative DEAD box RNA helicase {Archaeon Methanoco	99.82
d1c4oa2		174	Nucleotide excision repair enzyme UvrB {Thermus th	99.82
d1fuka_		162	Initiation factor 4a {Baker's yeast (Saccharomyces	99.82
d1q0ua_		209	Probable DEAD box RNA helicase YqfR {Bacillus stea	99.82
d2rb4a1		168	ATP-dependent RNA helicase DDX25 {Human (Homo sapi	99.81
d1t5ia_		168	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	99.81
d1t5la2		181	Nucleotide excision repair enzyme UvrB {Bacillus c	99.81
d1wp9a1		200	putative ATP-dependent RNA helicase PF2015 {Pyroco	99.78
d1gkub1		237	Helicase-like "domain" of reverse gyrase {Archaeon	99.77
d2p6ra4		201	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	99.77
d1a1va1		136	HCV helicase domain {Human hepatitis C virus (HCV)	99.77
d1oywa2		206	RecQ helicase domain {Escherichia coli [TaxId: 562	99.75
d1wp9a2		286	putative ATP-dependent RNA helicase PF2015 {Pyroco	99.74
d1yksa1		140	YFV helicase domain {Yellow fever virus [TaxId: 11	99.73
d1jr6a_		138	HCV helicase domain {Human hepatitis C virus (HCV)	99.68
d2fz4a1		206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	99.61
d2eyqa5		211	Transcription-repair coupling factor, TRCF {Escher	99.61
d1a1va2		299	HCV helicase domain {Human hepatitis C virus (HCV)	99.59
d1gm5a4		206	RecG helicase domain {Thermotoga maritima [TaxId:	99.59
d1rifa_		282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	99.58
d2eyqa3		233	Transcription-repair coupling factor, TRCF {Escher	99.48
d1gm5a3		264	RecG helicase domain {Thermotoga maritima [TaxId:	99.47
d2fwra1		200	DNA repair protein RAD25 {Archaeoglobus fulgidus [	99.4
d1gkub2		248	Helicase-like "domain" of reverse gyrase {Archaeon	99.29
d1z3ix1		346	Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI	99.13
d1z5za1		244	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	98.84
d1tf5a4		175	Translocation ATPase SecA, nucleotide-binding doma	98.75
d1z3ix2		298	Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI	98.67
d1w36d1		359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	98.67
d2qy9a2		211	GTPase domain of the signal recognition particle r	98.35
d1okkd2		207	GTPase domain of the signal recognition particle r	98.33
d1z63a1		230	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	98.32
d1vmaa2		213	GTPase domain of the signal recognition particle r	98.28
d1tf5a3		273	Translocation ATPase SecA, nucleotide-binding doma	98.16
d1ls1a2		207	GTPase domain of the signal sequence recognition p	98.15
d1nkta4		219	Translocation ATPase SecA, nucleotide-binding doma	98.09
d1nkta3		288	Translocation ATPase SecA, nucleotide-binding doma	98.08
d1j8yf2		211	GTPase domain of the signal sequence recognition p	97.97
d1uaaa1		306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	97.53
d1pjra1		318	DEXX box DNA helicase {Bacillus stearothermophilus	97.31
g1qhh.1		623	DEXX box DNA helicase {Bacillus stearothermophilus	97.31
d1sxjc2		227	Replication factor C3 {Baker's yeast (Saccharomyce	97.11
d1njfa_		239	delta prime subunit of DNA polymerase III, N-domai	97.07
d1a5ta2		207	delta prime subunit of DNA polymerase III, N-domai	97.06
d1ye8a1		178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.87
d1sxjb2		224	Replication factor C4 {Baker's yeast (Saccharomyce	96.73
d1sxje2		252	Replication factor C5 {Baker's yeast (Saccharomyce	96.72
d1iqpa2		231	Replication factor C {Archaeon Pyrococcus furiosus	96.61
d1gm5a3		264	RecG helicase domain {Thermotoga maritima [TaxId:	96.48
d2eyqa3		233	Transcription-repair coupling factor, TRCF {Escher	96.46
d1l8qa2		213	Chromosomal replication initiation factor DnaA {Aq	96.45
d2i3ba1		189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.37
d1g6oa_		323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.36
d2gnoa2		198	gamma subunit of DNA polymerase III, N-domain {The	96.22
d1p9ra_		401	Extracellular secretion NTPase EpsE {Vibrio choler	96.02
d1sgwa_		200	Putative ABC transporter PF0895 {Pyrococcus furios	96.0
d1sxjd2		237	Replication factor C2 {Baker's yeast (Saccharomyce	95.96
d2b8ta1		139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	95.95
d2pmka1		241	Haemolysin B ATP-binding protein {Escherichia coli	95.8
d1t5la1		413	Nucleotide excision repair enzyme UvrB {Bacillus c	95.67
d1fnna2		276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.5
d1xx6a1		141	Thymidine kinase, TK1, N-terminal domain {Clostrid	95.41
d1w36b1		485	Exodeoxyribonuclease V beta chain (RecB), N-termin	95.37
d1ny5a2		247	Transcriptional activator sigm54 (NtrC1), C-termin	95.22
d1ixza_		247	AAA domain of cell division protein FtsH {Thermus	95.19
d1r6bx2		268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.96
d1cr2a_		277	Gene 4 protein (g4p, DNA primase), helicase domain	94.83
d1e32a2		258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.77
d2hyda1		255	Putative multidrug export ATP-binding/permease pro	94.55
d3b60a1		253	Multidrug resistance ABC transporter MsbA, C-termi	94.46
d1e9ra_		433	Bacterial conjugative coupling protein TrwB {Esche	94.34
d2fnaa2		283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.27
d3adka_		194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	94.16
d2awna2		232	Maltose transport protein MalK, N-terminal domain	94.1
d1khta_		190	Adenylate kinase {Archaeon Methanococcus voltae [T	93.97
d1g41a_		443	HslU {Haemophilus influenzae [TaxId: 727]}	93.8
d1pzna2		254	DNA repair protein Rad51, catalytic domain {Archae	93.77
d1wb9a2		234	DNA repair protein MutS, the C-terminal domain {Es	93.77
d3dhwc1		240	Methionine import ATP-binding protein MetN {Escher	93.57
d1jbka_		195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.41
d1ly1a_		152	Polynucleotide kinase, kinase domain {Bacteriophag	93.1
d1oxxk2		242	Glucose transport protein GlcV, N-terminal domain	93.05
d1tf7a2		242	Circadian clock protein KaiC {Synechococcus sp. st	92.95
d1ofha_		309	HslU {Haemophilus influenzae [TaxId: 727]}	92.73
d1szpa2		251	DNA repair protein Rad51, catalytic domain {Baker'	92.7
d1xbta1		133	Thymidine kinase, TK1, N-terminal domain {Human (H	92.56
d1tf7a1		242	Circadian clock protein KaiC {Synechococcus sp. st	92.46
d1np6a_		170	Molybdopterin-guanine dinucleotide biosynthesis pr	92.32
d1ukza_		196	Uridylate kinase {Baker's yeast (Saccharomyces cer	92.04
d1qf9a_		194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	92.04
d1teva_		194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	92.04
d1r7ra3		265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.02
d1jj7a_		251	Peptide transporter Tap1, C-terminal ABC domain {H	91.99
d1zp6a1		176	Hypothetical protein Atu3015 {Agrobacterium tumefa	91.98
d1znwa1		182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	91.9
d1knqa_		171	Gluconate kinase {Escherichia coli [TaxId: 562]}	91.75
d1n0wa_		242	DNA repair protein Rad51, catalytic domain {Human	91.64
d1qhxa_		178	Chloramphenicol phosphotransferase {Streptomyces v	91.44
d1vpla_		238	Putative ABC transporter TM0544 {Thermotoga mariti	91.39
d2bdta1		176	Hypothetical protein BH3686 {Bacillus halodurans [	91.37
d1s3ga1		182	Adenylate kinase {Bacillus globisporus [TaxId: 145	91.2
d1ewqa2		224	DNA repair protein MutS, the C-terminal domain {Th	91.13
d1in4a2		238	Holliday junction helicase RuvB {Thermotoga mariti	91.13
d1um8a_		364	ClpX {Helicobacter pylori [TaxId: 210]}	91.09
d1s96a_		205	Guanylate kinase {Escherichia coli [TaxId: 562]}	90.97
d1ak2a1		190	Adenylate kinase {Cow (Bos taurus), mitochondrial	90.95
d1rkba_		173	Adenylate kinase {Human (Homo sapiens), isoenzyme	90.93
d1zaka1		189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	90.85
d1zina1		182	Adenylate kinase {Bacillus stearothermophilus [Tax	90.77
d1lw7a2		192	Transcriptional regulator NadR, ribosylnicotinamid	90.74
d1e4va1		179	Adenylate kinase {Escherichia coli [TaxId: 562]}	90.74
d1xjca_		165	Molybdopterin-guanine dinucleotide biosynthesis pr	90.68
d1sxja2		253	Replication factor C1 {Baker's yeast (Saccharomyce	90.6
d1br2a2		710	Myosin S1, motor domain {Chicken (Gallus gallus),	90.52
d1r0wa_		281	Cystic fibrosis transmembrane conductance regulato	90.49
d2i1qa2		258	DNA repair protein Rad51, catalytic domain {Archae	90.41
d1nksa_		194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	90.35
d1mv5a_		242	Multidrug resistance ABC transporter LmrA, C-termi	90.32
d1yj5a2		172	5' polynucleotide kinase-3' phosphatase, C-termina	90.19
d1v5wa_		258	Meiotic recombination protein DMC1/LIM15 homolog {	90.08
d1y63a_		174	Probable kinase LmjF30.1890 {Leishmania major [Tax	90.05
d1rz3a_		198	Hypothetical protein rbstp0775 {Bacillus stearothe	90.05
d2ak3a1		189	Adenylate kinase {Cow (Bos taurus), mitochondrial	89.99
d1nn5a_		209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	89.94
d1kaga_		169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	89.86
d1akya1		180	Adenylate kinase {Baker's yeast (Saccharomyces cer	89.63
d2cdna1		181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	89.62
d1c4oa1		408	Nucleotide excision repair enzyme UvrB {Thermus th	89.58
d1gvnb_		273	Plasmid maintenance system epsilon/zeta, toxin zet	89.47
d1l2ta_		230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	89.44
d1g2912		240	Maltose transport protein MalK, N-terminal domain	89.44
d1ixsb2		239	Holliday junction helicase RuvB {Thermus thermophi	89.41
d1d2na_		246	Hexamerization domain of N-ethylmalemide-sensitive	89.39
d1ckea_		225	CMP kinase {Escherichia coli [TaxId: 562]}	89.16
d1d0xa2		712	Myosin S1, motor domain {Dictyostelium discoideum	88.94
d1w7ja2		730	Myosin S1, motor domain {Chicken (Gallus gallus),	88.85
d1lkxa_		684	Myosin S1, motor domain {Dictyostelium discoideum,	88.81
d1e6ca_		170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	88.78
d1u94a1		263	RecA protein, ATPase-domain {Escherichia coli [Tax	88.78
d1gkya_		186	Guanylate kinase {Baker's yeast (Saccharomyces cer	88.46
d2mysa2		794	Myosin S1, motor domain {Chicken (Gallus gallus),	88.3
d3d31a2		229	Sulfate/molybdate ABC transporter, ATP-binding pro	88.24
d4tmka_		210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	88.21
d1w5sa2		287	CDC6-like protein APE0152, N-terminal domain {Aero	87.9
d2a5yb3		277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	87.74
d1v43a3		239	Hypothetical protein PH0022, N-terminal domain {Py	87.44
d1yrba1		244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	87.37
d1q3ta_		223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	87.27
d1kgda_		178	Guanylate kinase-like domain of Cask {Human (Homo	87.25
d1lvga_		190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	87.25
d1viaa_		161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	86.55
d1m8pa3		183	ATP sulfurylase C-terminal domain {Fungus (Penicil	86.38
d1kk8a2		789	Myosin S1, motor domain {Bay scallop (Aequipecten	86.32
d1nija1		222	Hypothetical protein YjiA, N-terminal domain {Esch	86.31
d1w1wa_		427	Smc head domain {Baker's yeast (Saccharomyces cere	85.9
d1nlfa_		274	Hexameric replicative helicase repA {Escherichia c	85.55
d1ji0a_		240	Branched chain aminoacid ABC transporter {Thermoto	85.53
d1lv7a_		256	AAA domain of cell division protein FtsH {Escheric	85.51
d1b0ua_		258	ATP-binding subunit of the histidine permease {Sal	85.22
d2onka1		240	Molybdate/tungstate import ATP-binding protein Wtp	85.15
g1xew.1		329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	84.86
d1gsia_		208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	84.84
d1g8pa_		333	ATPase subunit of magnesium chelatase, BchI {Rhodo	84.56
d1svma_		362	Papillomavirus large T antigen helicase domain {Si	84.04
d1bifa1		213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	83.86
d1l7vc_		231	ABC transporter involved in vitamin B12 uptake, Bt	83.66
d1uj2a_		213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	83.66
d1x6va3		195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	82.89
d2vp4a1		197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	82.67
d1g6ha_		254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	82.09
d1xp8a1		268	RecA protein, ATPase-domain {Deinococcus radiodura	81.82
d1mo6a1		269	RecA protein, ATPase-domain {Mycobacterium tubercu	81.5
d1tmka_		214	Thymidylate kinase {Baker's yeast (Saccharomyces c	81.24
d1p5zb_		241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	80.92
d2iyva1		165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	80.82
d1qvra2		387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	80.55
d2p6ra1		85	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	80.52

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=100.00  E-value=2.6e-41  Score=281.39  Aligned_cols=295  Identities=16%  Similarity=0.183  Sum_probs=216.3

Q ss_pred             HHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCC
Q ss_conf             99909939998148987689999999970226998999965258999999999999840213986669884321169970
Q 000790          597 VIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST  676 (1283)
Q Consensus       597 ~I~~~qvvII~apTGSGKTtqi~q~Lle~~~~~~~~IivtqPrR~lA~qvakrva~e~g~~lG~~VGy~ir~e~~~s~~t  676 (1283)
                      ++.+++++||.||||||||+++.+++++.....+.+++|++|+++||.|+++++....    +....  ..........+
T Consensus         5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~Ptr~La~q~~~~l~~~~----~~~~~--~~~~~~~~~~~   78 (305)
T d2bmfa2           5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLP----IRYQT--PAIRAEHTGRE   78 (305)
T ss_dssp             SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHTTTSC----CBCCC----------CCC
T ss_pred             HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCC----CCEEE--EEEEECCCCCC
T ss_conf             8646994999979999787999999999987269989998238999999999985487----52111--37850125765


Q ss_pred             EEEEECHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCEEE
Q ss_conf             09995506889987039999987329981899678661299999999997149954999525769989997728999373
Q 000790          677 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFH  756 (1283)
Q Consensus       677 ~I~~~T~G~LLr~l~~d~~L~~is~IIIDEaHERsl~tD~Ll~lLk~il~~r~dlkiIlmSATld~~~la~~f~~~pvi~  756 (1283)
                      .+.++|++.|...+.....+.++++|||||+|....+...++++++.+.. ++++++++||||++.....          
T Consensus        79 ~i~~~t~~~l~~~~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~-~~~~~~v~~SAT~~~~~~~----------  147 (305)
T d2bmfa2          79 IVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVE-MGEAAGIFMTATPPGSRDP----------  147 (305)
T ss_dssp             SEEEEEHHHHHHHHTSSSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-HTSCEEEEECSSCTTCCCS----------
T ss_pred             CCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCEEE----------
T ss_conf             30137748999998458531540089853011125205788899998416-6531389941578764334----------


Q ss_pred             ECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf             06863330145347980469999999999986139999799992999999999999999999852034689998189983
Q 000790          757 IPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPI  836 (1283)
Q Consensus       757 i~gr~~pV~i~y~~~~~~dyv~~~i~~~l~i~~~~~~G~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~Il~l  836 (1283)
                      .....+++.......+.....      ..........+++||||+++++++.++..|.+.             ++.+.++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-------------~~~~~~l  208 (305)
T d2bmfa2         148 FPQSNAPIMDEEREIPERSWN------SGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKN-------------GKKVIQL  208 (305)
T ss_dssp             SCCCSSCEEEEECCCCCSCCS------SCCHHHHSSCSCEEEECSCHHHHHHHHHHHHHH-------------TCCCEEC
T ss_pred             ECCCCCCCEEEEEECCHHHHH------HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC-------------CCCEEEE
T ss_conf             023478612799861588899------999999960799899963099999999999867-------------9989995


Q ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCE--ECCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             599999999999967059980599946731015788976699984885511--106878964333121599879998262
Q 000790          837 YSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMK--VYNPKMGMDALQVFPVSRAAADQRAGR  914 (1283)
Q Consensus       837 Hs~L~~~er~~If~~f~~G~rkVIVATnIaEtGItIp~I~~VIDsG~~K~~--~yd~~~g~~~L~~~PiS~as~~QRaGR  914 (1283)
                      |++++..    ....+..|.++++|||+++++|+|++ +.+|||+|.....  .||+..++..+...|+|.++|.||+||
T Consensus       209 ~~~~~~~----~~~~~~~~~~~~lvaT~~~~~G~~~~-~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR  283 (305)
T d2bmfa2         209 SRKTFDS----EYIKTRTNDWDFVVTTDISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGR  283 (305)
T ss_dssp             CTTCHHH----HGGGGGTSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTT
T ss_pred             CCCCHHH----HHHHHHCCCHHHHHHHHHHHHCCCCC-CCEEEECCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHCC
T ss_conf             7838477----77543100011355567887257888-408997587414657338987638804456998898324118


Q ss_pred             CCCCCCCE-EEEECCHHHH
Q ss_conf             59999978-9990284566
Q 000790          915 AGRTGPGT-CYRLYTESAY  932 (1283)
Q Consensus       915 AGR~g~G~-cyrLyte~~~  932 (1283)
                      |||.+.|. ...||.....
T Consensus       284 ~GR~~~~~~~~~~~~~~~~  302 (305)
T d2bmfa2         284 VGRNPKNENDQYIYMGEPL  302 (305)
T ss_dssp             SSCSSSCCCEEEEECSCCC
T ss_pred             CCCCCCCCEEEEEECCCCC
T ss_conf             6828999269999899888

PyMOL of d2bmfa2

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}	Back information, alignment and structure

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}	Back information, alignment and structure

>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}	Back information, alignment and structure

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}	Back information, alignment and structure

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}	Back information, alignment and structure

>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}	Back information, alignment and structure

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}	Back information, alignment and structure

>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}	Back information, alignment and structure

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}	Back information, alignment and structure

>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}	Back information, alignment and structure

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}	Back information, alignment and structure

>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}	Back information, alignment and structure

>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}	Back information, alignment and structure

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}	Back information, alignment and structure

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}	Back information, alignment and structure

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}	Back information, alignment and structure

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}	Back information, alignment and structure

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}	Back information, alignment and structure

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}	Back information, alignment and structure

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}	Back information, alignment and structure

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}	Back information, alignment and structure

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}	Back information, alignment and structure

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}	Back information, alignment and structure

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}	Back information, alignment and structure

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}	Back information, alignment and structure

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}	Back information, alignment and structure

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}	Back information, alignment and structure

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}	Back information, alignment and structure

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}	Back information, alignment and structure

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}	Back information, alignment and structure

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}	Back information, alignment and structure

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}	Back information, alignment and structure

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}	Back information, alignment and structure

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}	Back information, alignment and structure

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}	Back information, alignment and structure

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}	Back information, alignment and structure

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}	Back information, alignment and structure

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}	Back information, alignment and structure

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}	Back information, alignment and structure

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}	Back information, alignment and structure

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}	Back information, alignment and structure

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}	Back information, alignment and structure

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}	Back information, alignment and structure

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}	Back information, alignment and structure

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}	Back information, alignment and structure

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}	Back information, alignment and structure

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}	Back information, alignment and structure

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}	Back information, alignment and structure

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}	Back information, alignment and structure

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure