Citrus Sinensis ID: 000814

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------127
MVSEANPNPNYRKPLNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELEQVCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANISRQCFPILLECATKAIKEATDTESELPHLSGMSVITLEGLFSSLTYFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAELSLSIILTSGTLSPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAVVRKKRVKREGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSSMDQCKEVTKQNTQELNKSDHSGQNVQSISKYDPFSHQKSQGNFEVQTSLQTDQNNSCIEYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKYDSFPGLNLLDEVEVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSMPFSNEDPELLLVKETPAMDDNNTMASPGSLSKDGNSSSTIFQASTQSPDQLSVHSQSLTNPVRVPSSAQPEMVVTPEKEVTGDTSNLPPERDSSLSSSVNSHTQKRRKTMVSPSVDLMLMASREANRRIEFNSETNYVKNKSKTSNNCAESHLSSTPVMDKTLQISCSLCRSPLGLPENHLYVRCSVTSSAKAHLVSLLKQRQELCANVTSIPVIMTDISSVDQLLTNQSFGGASGQGIWCEEDGCVYNTLFCPFCSSPSNCLGVQIVASNALNFQLLNKILFYLDRLEIRIPESGKFKSEAKDSSPITHSAMDKVAAFSCIEKFSYSPILEDSGGWRSTKSKLRLPKKGRGS
ccccccccccccccccEEEEccEEEcccccccHHHHHHHHHHHHHHHHcccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccEEEEEcccHHHHHHHHHHHHHccccccEEEEcccccccccHHHHcccccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHcccccEEEEcccccccHHHHHHccccccccEEEEcccccHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEccccccccccccEEEEEcccHHHHHHHHHHcccEEEEcccccccHHHHHHHHccccccEEEccccccccccEEEEEEEEccccccEEEEEccccHHHHHHHHHHHHHHHccHHHHccccccEEEcccccHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHcccccEEEEEEEEcccccHHHHccccHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccEEcccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccHHHHHHHHHHcccccccccccccEEEEcHHHHHHHHHccccccccccccEEccccEEEEEEccccccccccEEEEEEEEcccccHHHcccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccEEEEccEEEEccccccHHHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHccccccEEEEccccccccccccccccccHHHHHHHHHHHcccccccccHHHcccccccccccccccEcHHHHHHHcccccccHHHHHHHHHHcccEEEEEcHHcccHHHHHHHcccccccEEEEEcHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccccccEEEEEEccHHHHHHHHHHcccEEEEEcccccccHHHHHHHccccEEEEEccEEEccccEEEEEEEcccccccEEcccccccccHHHHHHHHHHHHHcccHHHHHccccEEEEccccccccHHHHHHHHHHHHccccccEEEEEEEccccccEEEEHccccccccccccHHccccEEEEEEcccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHEcccccEEEEEEccHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHcHHHHHHccccccccHHHcccccccccccccHHcccccHccccccccccccccccccccccccHccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEccccccccccccEcccccccccccccccEEccccHcccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccHHcccccccccccHHHHcccccccccEcccccccccccccEEccccccccccccccccccccccccccccHccEEEEEHHHccccccccccccEEEEEEccccHHHHHHHcccccccccccccEEEEEEccHHHHHHHHccccccccccEEEEcccccEEEEEEcccccccccEEEEEEEEEcHHHHHHHHHEEEEcccEEEcccccccccHHccccccccccccccccccccHHHHccccccccccccccccccEEcccccccc
mvseanpnpnyrkplnayhvggiqvefpyqpygsqlVFMCRVISTLDraqrdghchallesptgtgksLSLLCSTLAWQQNcklknqlanishskpdteavtdplangggfipesqpstippstngqTAQVAMNNKnvkkkmtptIFYASRTHSQISQVISEYKKTAYRVPMAVLASRkhyctnkyvrdkenIDEECKLLlgdrnlgcpqfknvhkvrghpslqkggchevhdieDLVNVGQVVRGCSYYAARsmaddaqlvfcpysyiinpvirgamEVDIKGAILILDeahniediardagsvdidEDVLLKLQMELEQvcsvnpmiyQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANISRQCFPILLECATKAIKEAtdteselphlsgmsVITLEGLFSSLTYffsrngshvsDYQLALQKYIKrdsknpggnwthtlslwclnpavvfKDVAELSLSIILtsgtlspmnsfsselgvqfgtcleaphvidVDLQVLTSVistgpdnyplnasyktadGYKLMEKLCNRWRetgqwsrlnakkplfvepkggsqeDFEIVLKHYYNSISQGSKCAVVRKKRvkregnndlntiESQENANKKGASFLAVCRgkivvgipfpninDIQVSLKKKYNDTYRSsknllsgneWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWvgkkmfnglensdndvdhvssmdqcKEVTKQNTqelnksdhsgqnvqsiskydpfshqksqgnFEVQTSlqtdqnnscieyidlermndknnhsidsskgstrkenkklnsydnsgqklhssvkydsfpglnlldevEVQEFVQLDRVSSCKDYINTQCslqkssrcceassmpfsnedpelllvketpamddnntmaspgslskdgnssstifqastqspdqlsvhsqsltnpvrvpssaqpemvvtpekevtgdtsnlpperdsslsssvnshtqkrrktmvspSVDLMLMASREANRRIEfnsetnyvknksktsnncaeshlsstpvmdktlqiscslcrsplglpenhlyvRCSVTSSAKAHLVSLLKQRQELCANVTSIPVIMTDISSVDQlltnqsfggasgqgiwceedgcvyntlfcpfcsspsnclgvQIVASNALNFQLLNKILFYLDRleiripesgkfkseakdsspithsaMDKVAAFSciekfsyspiledsggwrstksklrlpkkgrgs
mvseanpnpnyrkpLNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFyasrthsqiSQVISEYKKTAYRVPMAvlasrkhyctnkyvrdkeNIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELEQVCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANISRQCFPILLECATKAIKEATdteselphlsGMSVITLEGLFSSLTYFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAELSLSIILTSGTLSPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVistgpdnyplnasyKTADGYKLMEKLCNRWretgqwsrlnakkplfvepkggSQEDFEIVLKHYynsisqgskcavvrKKRVkregnndlntiesqenankkGASFLAVCRGKIVVGipfpnindIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSSMDQCKEVTKQNtqelnksdhsgqnVQSISKYDPFSHQKSQGNFEVQTSLQTDQNNSCIEYIdlermndknnhsidsskgstrkenkklnsydnsgqklhSSVKYDSFPGLNLLDEVEVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSmpfsnedpelLLVKETPAMDDNNTMASPGSLSKDGNSSSTIFQASTQSPDQLSVHSQSLTNpvrvpssaqpemvvtpekevtgdtsnlpperdsslsssvnshtqkrrktmvspsvDLMLMASReanrriefnsetnyvknksktsnncaeshLSSTPVMDKTLQISCSLCRSPLGLPENHLYVRCSVTSSAKAHLVSLLKQRQELCANVTSIPVIMTDISSVDQLLTNQSFGGASGQGIWCEEDGCVYNTLFCPFCSSPSNCLGVQIVASNALNFQLLNKILFYLDRLEIRIPesgkfkseakdsspithSAMDKVAAFSCIEKFSyspiledsggwrstksklrlpkkgrgs
MVSEANPNPNYRKPLNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMnnknvkkkMTPTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELEQVCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANISRQCFPILLECATKAIKEATDTESELPHLSGMSVITLEGLFSSLTYFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAElslsiiltsgtlsPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAvvrkkrvkrEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSSMDQCKEVTKQNTQELNKSDHSGQNVQSISKYDPFSHQKSQGNFEVQTSLQTDQNNSCIEYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKYDSFPGLNLLDEVEVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSMPFSNEDPELLLVKETPAMDDNNTMASPGSLSKDGNSSSTIFQASTQSPDQLSVHSQSLTNPVRVPSSAQPEMVVTPEKEVTGDTSNLPPERDSSLSSSVNSHTQKRRKTMVSPSVDLMLMASREANRRIEFNSETNYVKNKSKTSNNCAESHLSSTPVMDKTLQISCSLCRSPLGLPENHLYVRCSVTSSAKAHLVSLLKQRQELCANVTSIPVIMTDISSVDQLLTNQSFGGASGQGIWCEEDGCVYNTLFCPFCSSPSNCLGVQIVASNALNFQLLNKILFYLDRLEIRIPESGKFKSEAKDSSPITHSAMDKVAAFSCIEKFSYSPILEDSGGWRSTKSKLRLPKKGRGS
**************LNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQLA******************************************************PTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELEQVCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANISRQCFPILLECATKAIKEATDT**ELPHLSGMSVITLEGLFSSLTYFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAELSLSIILTSGTLSPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAVVR*************************ASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNG*********************************************************************CIEYI*****************************************KYDSFPGLNLLDEVEVQEFVQLDRVSSCKDYINTQCSLQ***************************************************************************************************************************************************************************KTLQISCSLCRSPLGLPENHLYVRCSVTSSAKAHLVSLLKQRQELCANVTSIPVIMTDISSVDQLLTNQSFGGASGQGIWCEEDGCVYNTLFCPFCSSPSNCLGVQIVASNALNFQLLNKILFYLDRLEIRI**********************KVAAFSCIEKFSYSPIL**********************
*****************YHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHA**********SLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRD**N**E*****LG**N**CPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELEQVCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANISRQCFPILLECATKA******************VITLEGLFSSLTYFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAELSLSIILTSGTLSPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQ***************GNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFR*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************QISCSLCRSPLGLPENHLYVRCSVTSSAKAHLVSLLKQRQ*****VTSIPVIMTDISSV*****************WCEEDGCVYNTLFCPFCSSPSNCLGVQIVASNALNFQLLNKILFYLDR********************************SCIEKFSYS******************P******
********PNYRKPLNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELEQVCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANISRQCFPILLECATKAIKEATDTESELPHLSGMSVITLEGLFSSLTYFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAELSLSIILTSGTLSPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAVVRKKRVKREGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSSMDQ**********************QSISKYDPFSHQKSQGNFEVQTSLQTDQNNSCIEYIDLERMNDKNNHS***********************KLHSSVKYDSFPGLNLLDEVEVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSMPFSNEDPELLLVKETPAMDDNNTMA*********************************************EMVV************************************VSPSVDLMLMASREANRRIEFNSETNYVKNKSKTSNNCAESHLSSTPVMDKTLQISCSLCRSPLGLPENHLYVRCSVTSSAKAHLVSLLKQRQELCANVTSIPVIMTDISSVDQLLTNQSFGGASGQGIWCEEDGCVYNTLFCPFCSSPSNCLGVQIVASNALNFQLLNKILFYLDRLEIRIPESG************THSAMDKVAAFSCIEKFSYSPILEDSGGWRST*************
*************PLNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKN***NI**SKPDTEAVTDPLANG*******************************KKMTPTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELEQVCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANISRQCFPILLECATKAIKEATDTESELPHLSGMSVITLEGLFSSLTYFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAELSLSIILTSGTLSPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAVVRKKRVKREGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWV**********S*************************************************************************************************************************LDEVEVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSMPFSNEDPELLLVKETPAMDDNNTMA************************************************************N***ERDSSLSSSVNSHTQKRRKTMVSPSVDLMLMASRE***R*E***ET*****************LSSTPVMDKTLQISCSLCRSPLGLPENHLYVRCSVTSSAKAHLVSLLKQRQELCANVTSIPVIMTDISSVDQLLTNQSFGGASGQGIWCEEDGCVYNTLFCPFCSSPSNCLGVQIVASNALNFQLLNKILFYLDRLEIRI************************AAFSCIEKFSYSPIL**SGGWR***************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVSEANPNPNYRKPLNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELEQVCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANISRQCFPILLECATKAIKEATDTESELPHLSGMSVITLEGLFSSLTYFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAELSLSIILTSGTLSPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAVVRKKRVKREGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSSMDQCKEVTKQNTQELNKSDHSGQNVQSISKYDPFSHQKSQGNFEVQTSLQTDQNNSCIEYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKYDSFPGLNLLDEVEVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSMPFSNEDPELLLVKETPAMDDNNTMASPGSLSKDGNSSSTIFQASTQSPDQLSVHSQSLTNPVRVPSSAQPEMVVTPEKEVTGDTSNLPPERDSSLSSSVNSHTQKRRKTMVSPSVDLMLMASREANRRIEFNSETNYVKNKSKTSNNCAESHLSSTPVMDKTLQISCSLCRSPLGLPENHLYVRCSVTSSAKAHLVSLLKQRQELCANVTSIPVIMTDISSVDQLLTNQSFGGASGQGIWCEEDGCVYNTLFCPFCSSPSNCLGVQIVASNALNFQLLNKILFYLDRLEIRIPESGKFKSEAKDSSPITHSAMDKVAAFSCIEKFSYSPILEDSGGWRSTKSKLRLPKKGRGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1269 2.2.26 [Sep-21-2011]
Q3YK191252 Fanconi anemia group J pr yes no 0.454 0.460 0.367 1e-118
Q5SXJ31174 Fanconi anemia group J pr yes no 0.445 0.481 0.358 1e-116
Q9BX631249 Fanconi anemia group J pr yes no 0.480 0.488 0.340 1e-116
Q16X921010 Regulator of telomere elo N/A no 0.524 0.658 0.303 2e-89
Q5RJZ11274 Regulator of telomere elo no no 0.513 0.510 0.303 5e-85
B0W9F4978 Regulator of telomere elo N/A no 0.521 0.676 0.291 1e-84
B3MSG8994 Regulator of telomere elo N/A no 0.514 0.656 0.296 2e-84
B4PZB4985 Regulator of telomere elo N/A no 0.513 0.661 0.294 3e-84
Q0VGM91203 Regulator of telomere elo no no 0.508 0.536 0.300 2e-83
Q7QEI1991 Regulator of telomere elo yes no 0.516 0.660 0.289 6e-83
>sp|Q3YK19|FANCJ_CHICK Fanconi anemia group J protein homolog OS=Gallus gallus GN=BRIP1 PE=2 SV=1 Back     alignment and function desciption
 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 254/691 (36%), Positives = 374/691 (54%), Gaps = 114/691 (16%)

Query: 137 NVKKK------MTPTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRD 189
           N KKK        P IF+ +RTH QI+Q+  E K+TAY  VPM +L+SR + C +  V  
Sbjct: 240 NTKKKANGDQTFIPKIFFGTRTHKQIAQITRELKRTAYSGVPMTILSSRDYTCIHPVVSS 299

Query: 190 -KENIDEEC-KLLLGDRNLGCPQFKNVHKVRGHPSLQKG-GCHEVHDIEDLVNVGQVVRG 246
              N +E C +LL G     C  +  VHK+  H +LQ     ++  DIEDLV++G+ +R 
Sbjct: 300 SNSNRNELCVELLEGKHGKSCLYYHGVHKLSEHYALQSAHNTYQAWDIEDLVSLGKKLRA 359

Query: 247 CSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVD 306
           C Y+AAR +   A +VFCPY+Y+++P IR +ME+++KG ++ILDEAHNIED AR+A S  
Sbjct: 360 CPYFAARELMVGADIVFCPYNYLLDPQIRESMEINLKGQVVILDEAHNIEDSAREAVSYS 419

Query: 307 IDEDVLLKLQMELEQVC--SVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWT 364
           + E  L   + EL+ +   ++    ++ L  M   L  W+    + L +  ++     W+
Sbjct: 420 VTESQLNAAREELDFMVNNNIRQKDHEQLRAMCCSLTNWLRESSSQLVETGYETSCKVWS 479

Query: 365 GDKALRELQEANISRQCFPIL-------LECATKAIKEATDTESELPHLSGMSVITLEGL 417
           G + L    +  I+   FPIL       LE   K      +   E+P +S  + I L+GL
Sbjct: 480 GKEMLNHFHDMGITNISFPILQKHLSAVLEKEEKISMFGKEELVEIPIVSSATQIVLKGL 539

Query: 418 FSSLTYFFSRNGSHVSDYQLALQK-YIKRDSKNPGGNWT-------------------HT 457
           F  L Y F  N     DY++ALQ+ Y   +   P  + T                   H 
Sbjct: 540 FMVLLYLFKDNSRFADDYRVALQQTYAWTNDNQPDVSDTSAFFTKTKHKRNLRHKTVVHM 599

Query: 458 LSLWCLNPAVVFKDVAELSLSIILTSGTLSPMNSFSSELGVQFGTCLEAPHVIDVDLQVL 517
           L+ WCLNPAV F D+ ++  +++LTSGTLSPM+SFSSELGV+F   LEA HVI  + QV 
Sbjct: 600 LNFWCLNPAVAFSDLNDVR-TVVLTSGTLSPMDSFSSELGVKFSIQLEANHVIR-NSQVW 657

Query: 518 TSVISTGPDNYPLNASYKTAD----------------------------GYKLMEKLCNR 549
              I TGP+   L A+++  +                             YKL++KL +R
Sbjct: 658 VGTIGTGPNGRKLCATFQHTETFEFQDEVGALLLSVCQKVGQGILCFLPSYKLLDKLKDR 717

Query: 550 WRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAVVRKKRVKREGNND 609
           W  TG W  L   K +  EP+GG++ DF+ +LK YY++I              K +G  D
Sbjct: 718 WIHTGLWRNLELVKTVIAEPQGGAKSDFDELLKIYYDAI--------------KFKGEKD 763

Query: 610 LNTIESQENANKKGASFLAVCRGK---------------IVVGIPFPNINDIQVSLKKKY 654
                        GA  +AVCRGK               I +GIPFPN+ D+QV LK+KY
Sbjct: 764 -------------GALLIAVCRGKVSEGLDFCDENARAVITIGIPFPNVKDLQVELKRKY 810

Query: 655 NDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNR--AHI 712
           ND +++++ LL G++WY  QA+RALNQA+GRCIRHR D+GA+IL+D+RF+   N+    +
Sbjct: 811 NDQHKTTRGLLPGSQWYEIQAYRALNQALGRCIRHRSDWGALILVDDRFRNNPNKYITGL 870

Query: 713 SKWLRKSIKQYDSFDASLEGLKSFF-RDVKG 742
           SKW+R+ ++ +++F ++LE L +F  R+ KG
Sbjct: 871 SKWIRQQVQHHENFGSALESLHAFAERNQKG 901
DNA-dependent ATPase and 5' to 3' DNA helicase required for the maintenance of chromosomal stability. Acts late in the 'Fanconi anemia' pathway of DNA repair, after FANCD2 ubiquitination. Probably not involved in the repair of DNA double-strand breaks by homologous recombination.
Gallus gallus (taxid: 9031)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|Q5SXJ3|FANCJ_MOUSE Fanconi anemia group J protein homolog OS=Mus musculus GN=Brip1 PE=2 SV=1 Back     alignment and function description
>sp|Q9BX63|FANCJ_HUMAN Fanconi anemia group J protein OS=Homo sapiens GN=BRIP1 PE=1 SV=1 Back     alignment and function description
>sp|Q16X92|RTEL1_AEDAE Regulator of telomere elongation helicase 1 homolog OS=Aedes aegypti GN=AAEL008960 PE=3 SV=1 Back     alignment and function description
>sp|Q5RJZ1|RTEL1_RAT Regulator of telomere elongation helicase 1 OS=Rattus norvegicus GN=Rtel1 PE=2 SV=2 Back     alignment and function description
>sp|B0W9F4|RTEL1_CULQU Regulator of telomere elongation helicase 1 homolog OS=Culex quinquefasciatus GN=CPIJ003765 PE=3 SV=1 Back     alignment and function description
>sp|B3MSG8|RTEL1_DROAN Regulator of telomere elongation helicase 1 homolog OS=Drosophila ananassae GN=GF20802 PE=3 SV=1 Back     alignment and function description
>sp|B4PZB4|RTEL1_DROYA Regulator of telomere elongation helicase 1 homolog OS=Drosophila yakuba GN=GE16425 PE=3 SV=1 Back     alignment and function description
>sp|Q0VGM9|RTEL1_MOUSE Regulator of telomere elongation helicase 1 OS=Mus musculus GN=Rtel1 PE=2 SV=2 Back     alignment and function description
>sp|Q7QEI1|RTEL1_ANOGA Regulator of telomere elongation helicase 1 homolog OS=Anopheles gambiae GN=AGAP000634 PE=3 SV=5 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1269
2240618651183 predicted protein [Populus trichocarpa] 0.869 0.932 0.585 0.0
3594919141255 PREDICTED: Fanconi anemia group J protei 0.921 0.932 0.557 0.0
2977455661218 unnamed protein product [Vitis vinifera] 0.888 0.926 0.525 0.0
4495195831239 PREDICTED: Fanconi anemia group J protei 0.921 0.943 0.533 0.0
2555392561248 brca1 interacting protein helicase 1 bri 0.652 0.663 0.694 0.0
2402541291175 RAD3-like DNA-binding helicase protein [ 0.613 0.662 0.622 0.0
2978504921171 hypothetical protein ARALYDRAFT_889526 [ 0.736 0.798 0.525 0.0
4495195851041 PREDICTED: LOW QUALITY PROTEIN: Fanconi 0.608 0.741 0.639 0.0
4494557261042 PREDICTED: LOW QUALITY PROTEIN: Fanconi 0.608 0.740 0.629 0.0
1478653461261 hypothetical protein VITISV_018998 [Viti 0.753 0.758 0.495 0.0
>gi|224061865|ref|XP_002300637.1| predicted protein [Populus trichocarpa] gi|222842363|gb|EEE79910.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1398 bits (3618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 734/1253 (58%), Positives = 872/1253 (69%), Gaps = 150/1253 (11%)

Query: 6    NPNPNYRKPLNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGT 65
            NP+P       +YH+GGIQVEFPY+PYG+QL FM RVISTLDRAQRDGHCHALLESPTGT
Sbjct: 11   NPDPK-----KSYHIGGIQVEFPYKPYGTQLAFMGRVISTLDRAQRDGHCHALLESPTGT 65

Query: 66   GKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTN 125
            GKSLSLLCSTLAWQQN KLKNQ AN++HS P+ EA+TDPLA+GGGF+PES PS+  P+  
Sbjct: 66   GKSLSLLCSTLAWQQNYKLKNQYANLTHSTPNPEAITDPLAHGGGFVPESTPSSTEPTAA 125

Query: 126  GQTAQVAMNNKNVKKKMTPTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNK 185
             + AQ   +NK  KKK  P I+YASRTHSQISQV+SE++KT YRVPMAVLASRKHYCTN 
Sbjct: 126  VELAQKVASNK--KKKAVPKIYYASRTHSQISQVVSEFRKTTYRVPMAVLASRKHYCTNV 183

Query: 186  YVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVR 245
            +V  KENIDEECKLLL D+  GC QFKN +KVRGHPSLQKGGCHEVHDIEDLV VGQVV+
Sbjct: 184  HVNRKENIDEECKLLLKDKEAGCLQFKNANKVRGHPSLQKGGCHEVHDIEDLVKVGQVVK 243

Query: 246  GCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSV 305
            GCSYYAARSMADDAQLVFCPY+YIINPVIRGAMEVDI GAIL+LDEAHNIEDIARDAGSV
Sbjct: 244  GCSYYAARSMADDAQLVFCPYNYIINPVIRGAMEVDIIGAILVLDEAHNIEDIARDAGSV 303

Query: 306  DIDEDVLLKLQMELEQVCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTG 365
            D++EDVL KLQ EL+++C V+PMIYQPL EM QDL+ WIERRK  L KREFQH+ SCW G
Sbjct: 304  DVEEDVLQKLQTELQELCPVDPMIYQPLYEMAQDLLSWIERRKNKLEKREFQHYCSCWAG 363

Query: 366  DKALRELQEANISRQCFPILLECATKAIKEATDTESELPHLSGMSVITLEGLFSSLTYFF 425
            DKALRE QEANIS+QCFPILL+CA +AIK ATDTE+E  HLSGMSV+ LEGLFSSLTYFF
Sbjct: 364  DKALREFQEANISQQCFPILLDCAKQAIKAATDTEAEGSHLSGMSVVLLEGLFSSLTYFF 423

Query: 426  SRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAELSLSIILTSGT 485
            SRNG  VSD+QLAL++Y+KRD K   G+WT TLSLWCLNPAVVFKD+A+LSLS+ILTSGT
Sbjct: 424  SRNGCQVSDFQLALRRYVKRDGKK-AGDWTCTLSLWCLNPAVVFKDIADLSLSVILTSGT 482

Query: 486  LSPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTAD------- 538
            LSPMNSFSSELGVQFGTCLEAPHV+DV+ QV  SVIST PDNYPLNASYKTAD       
Sbjct: 483  LSPMNSFSSELGVQFGTCLEAPHVVDVESQVCVSVISTSPDNYPLNASYKTADCYTFQDA 542

Query: 539  ---------------------GYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDF 577
                                  YKLMEKL NRWRETGQWSRLNA+KPLFVEP+GGSQEDF
Sbjct: 543  LGKSLEEICKIVPAGSLVFFPSYKLMEKLSNRWRETGQWSRLNARKPLFVEPRGGSQEDF 602

Query: 578  EIVLKHYYNSISQGSKCAVVRKKRVKREGNNDLNTIESQENANKKGASFLAVCRGKIVVG 637
            + +LK YY+ I +  + A+ RK++VK+   N L+  ES +N+ K GA+FLAVCRGK+  G
Sbjct: 603  DSILKGYYDCIRRDKRPALGRKRKVKKVDANHLDGTESTDNSEKGGAAFLAVCRGKVSEG 662

Query: 638  IPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAII 697
            I F +        +KKYND Y++SKNLL GNEWYC QAFRALNQA+GRCIRH+FDYG+II
Sbjct: 663  IDFSDD-----YARKKYNDAYKTSKNLLGGNEWYCQQAFRALNQAVGRCIRHKFDYGSII 717

Query: 698  LLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSD- 756
            LLDER++EERNR +ISKWLRKSI+Q+++FD SLE L+SFFR+ K  VGK M   L NSD 
Sbjct: 718  LLDERYKEERNRVYISKWLRKSIQQHNNFDMSLEVLRSFFRNAKEKVGKNMEEFLLNSDT 777

Query: 757  NDVDHVSSMDQCKEVTKQNTQELNKSDHSGQNVQSISKYD-PFSHQKSQGNFEVQTSLQT 815
            N   ++  MDQ    T+  +Q+L+ SD  G+ + S++K +   S  KSQ + EVQ S Q 
Sbjct: 778  NKEKNIPRMDQIVGHTRNKSQKLSNSDQYGEKIVSLTKCEGAVSKLKSQDDVEVQASFQI 837

Query: 816  DQN-NSCIEYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKYDSFPGL 874
            D    S  E IDLE          DS  GS   E                   +   P +
Sbjct: 838  DDELESSQEIIDLE---------CDSHIGSRCSE-----------------ASFHEDPEI 871

Query: 875  NLLDEVEVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSMPFSNEDPELLLVKETPAM 934
             L+ E                              C  A+S  F ++D            
Sbjct: 872  TLVKETP------------------------GMGECGAAASPGFFSKD----------GN 897

Query: 935  DDNNTMASPGSLSKDGNSSSTIFQASTQSPDQLSVHSQSLTNPVRVPSSAQPEMVVTPEK 994
              +  M +P  L+  G  S       + +PD+                 +Q  M+VTPEK
Sbjct: 898  SSSTMMQAPNELADQGLVSLVSVTNQSAAPDK-----------------SQCSMLVTPEK 940

Query: 995  EVTGDTSNLPPERDSSLSSSVNSHTQKRRKTMVSPSVDLM-------------------- 1034
            E+T  T NL PE +SSL+ SVNSHTQKRRK+M    ++L                     
Sbjct: 941  ELTITTCNLRPEVESSLNLSVNSHTQKRRKSMDLSLINLQGEQSDTSYAETPGCVSFTRS 1000

Query: 1035 LMASREANRRIEFNSETNYVKNKSKTS------NNCAESHLSSTPVMDKTLQISCSLCRS 1088
             + S + NRRIEF  ETN  + +S         N+C  S  SS  +MDK LQISCSLC+S
Sbjct: 1001 SVTSGDTNRRIEFGLETNCRERQSTKHASPLLPNSCGTSCASSDSLMDKRLQISCSLCKS 1060

Query: 1089 PLGLPENHLYVRCSVTSSAKAHLVSLLKQRQELCA--NVTSIPVIMTDISSVDQLLTNQS 1146
            PLG PEN+LYV CS+TSS+K HL SL+K+R E CA    T +PV++TDISSVDQ L N +
Sbjct: 1061 PLGRPENNLYVECSLTSSSKVHLASLVKERMERCAKNKSTCVPVLVTDISSVDQRLCNIA 1120

Query: 1147 FGGASGQGIWCEEDGCVYNTLFCPFCSSPSNCLGVQIVASNALNFQLLNKILF 1199
               A  +G+W EEDGCV+N++FCPFCS  SNCLGV+I+A++A N QLLNK+ F
Sbjct: 1121 LQDAQQKGVWSEEDGCVFNSVFCPFCSM-SNCLGVKIMATDASNVQLLNKVGF 1172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359491914|ref|XP_002272718.2| PREDICTED: Fanconi anemia group J protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745566|emb|CBI40731.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449519583|ref|XP_004166814.1| PREDICTED: Fanconi anemia group J protein homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|255539256|ref|XP_002510693.1| brca1 interacting protein helicase 1 brip1, putative [Ricinus communis] gi|223551394|gb|EEF52880.1| brca1 interacting protein helicase 1 brip1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|240254129|ref|NP_173495.5| RAD3-like DNA-binding helicase protein [Arabidopsis thaliana] gi|332191893|gb|AEE30014.1| RAD3-like DNA-binding helicase protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297850492|ref|XP_002893127.1| hypothetical protein ARALYDRAFT_889526 [Arabidopsis lyrata subsp. lyrata] gi|297338969|gb|EFH69386.1| hypothetical protein ARALYDRAFT_889526 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449519585|ref|XP_004166815.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|449455726|ref|XP_004145602.1| PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|147865346|emb|CAN84083.1| hypothetical protein VITISV_018998 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1269
TAIR|locus:20304971175 AT1G20720 [Arabidopsis thalian 0.422 0.456 0.658 1.4e-304
UNIPROTKB|E1C1X91249 BRIP1 "Fanconi anemia group J 0.408 0.414 0.305 4.2e-110
ZFIN|ZDB-GENE-081107-111217 brip1 "BRCA1 interacting prote 0.234 0.244 0.356 2.2e-109
UNIPROTKB|Q3YK191252 BRIP1 "Fanconi anemia group J 0.407 0.412 0.302 1.2e-108
UNIPROTKB|J3QSE8994 BRIP1 "Fanconi anemia group J 0.280 0.358 0.324 8.1e-106
UNIPROTKB|J9NVZ81214 BRIP1 "Uncharacterized protein 0.275 0.288 0.319 2.1e-105
UNIPROTKB|D4ACW51170 Brip1 "Protein Brip1" [Rattus 0.234 0.254 0.340 3.4e-105
UNIPROTKB|E2RHN51244 BRIP1 "Uncharacterized protein 0.275 0.281 0.319 4.3e-105
MGI|MGI:24428361174 Brip1 "BRCA1 interacting prote 0.234 0.253 0.353 5.8e-105
UNIPROTKB|Q9BX631249 BRIP1 "Fanconi anemia group J 0.280 0.285 0.324 6.1e-104
TAIR|locus:2030497 AT1G20720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1888 (669.7 bits), Expect = 1.4e-304, Sum P(3) = 1.4e-304
 Identities = 360/547 (65%), Positives = 428/547 (78%)

Query:     4 EANPNPNYRKPLNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPT 63
             E     N + P N Y +GG+QVEFPYQPYG+QL FM RVISTLDRAQRDGHCHALLESPT
Sbjct:    13 EVKQTLNSKNPKNVYQIGGLQVEFPYQPYGTQLAFMSRVISTLDRAQRDGHCHALLESPT 72

Query:    64 GTGKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPS 123
             GTGKSLSLLCS LAWQQN K +    N+SHSK   EA TDPL +GGGFIPE+QPS  P S
Sbjct:    73 GTGKSLSLLCSVLAWQQNYKSRLLKGNLSHSKAAPEAATDPLNHGGGFIPETQPSDTPAS 132

Query:   124 TNGQTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCT 183
             TN + A+ A           PTI+YASRTHSQI+QVI EY+KT YRVPMAVLASRKHYCT
Sbjct:   133 TNVEKAETA----TKKRTKIPTIYYASRTHSQITQVIREYRKTGYRVPMAVLASRKHYCT 188

Query:   184 NKYVRDKENIDEECKLLLGDR-NLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQ 242
             N++V  K+N+D+EC+LLL D+ N+ C +FKNV+K+  HPSLQ  G +EVHDIEDLV VG+
Sbjct:   189 NRHVLGKDNVDDECRLLLKDKANIQCSEFKNVNKITSHPSLQPRGHNEVHDIEDLVKVGK 248

Query:   243 VVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDA 302
              VRGC Y+A+ SMA++AQLVFCPYSYI+NPVIR  +EVD+KGAI+I DEAHN+EDIAR+A
Sbjct:   249 NVRGCPYFASWSMAENAQLVFCPYSYIVNPVIRAGVEVDLKGAIIIFDEAHNMEDIAREA 308

Query:   303 GSVDIDEDVLLKLQMELEQVCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSC 362
             GS++++ED L KLQ ELEQ+    PMIYQPL E+ + L+ WI R+K +LAKR+FQH+FS 
Sbjct:   309 GSINLEEDTLFKLQNELEQMSVAQPMIYQPLCEVVEGLISWIGRKKDSLAKRDFQHYFSS 368

Query:   363 WTGDKALRELQEANISRQCFPILLECATKAI---KEATDTESELPHLSGMSVITLEGLFS 419
             WTGDKALREL+E+NI+R+CFPILLEC TKAI   KEA + ES++ +LSG+SV+TLE LFS
Sbjct:   369 WTGDKALRELEESNITRECFPILLECFTKAIRTSKEA-EMESDMLYLSGISVLTLEELFS 427

Query:   420 SLTYFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXX 479
             SLTYFFSRNGSH+ DYQL LQ+  KR   +P G WTHT SLWC+NPAVVFKD+A+     
Sbjct:   428 SLTYFFSRNGSHILDYQLGLQRSTKRG--DPSGTWTHTFSLWCMNPAVVFKDLADISLSV 485

Query:   480 XXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTADG 539
                     PMNSFSSELG+QFGT LEAPHVID ++QV    IS GP NYPLNASYKTAD 
Sbjct:   486 ILTSGTLSPMNSFSSELGMQFGTSLEAPHVIDPNMQVWAGAISNGPSNYPLNASYKTADA 545

Query:   540 YKLMEKL 546
             Y   + L
Sbjct:   546 YSFQDAL 552
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA
GO:0008026 "ATP-dependent helicase activity" evidence=IEA
GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA
GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
UNIPROTKB|E1C1X9 BRIP1 "Fanconi anemia group J protein homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081107-11 brip1 "BRCA1 interacting protein C-terminal helicase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q3YK19 BRIP1 "Fanconi anemia group J protein homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|J3QSE8 BRIP1 "Fanconi anemia group J protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9NVZ8 BRIP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D4ACW5 Brip1 "Protein Brip1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHN5 BRIP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2442836 Brip1 "BRCA1 interacting protein C-terminal helicase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BX63 BRIP1 "Fanconi anemia group J protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.13LOW CONFIDENCE prediction!
3rd Layer3.6.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1269
TIGR00604705 TIGR00604, rad3, DNA repair helicase (rad3) 2e-75
pfam06733168 pfam06733, DEAD_2, DEAD_2 4e-49
smart00488289 smart00488, DEXDc2, DEAD-like helicases superfamil 1e-48
COG1199654 COG1199, DinG, Rad3-related DNA helicases [Transcr 1e-43
pfam13307165 pfam13307, Helicase_C_2, Helicase C-terminal domai 5e-36
smart00491142 smart00491, HELICc2, helicase superfamily c-termin 7e-28
COG1199654 COG1199, DinG, Rad3-related DNA helicases [Transcr 3e-09
TIGR01407850 TIGR01407, dinG_rel, DnaQ family exonuclease/DinG 0.003
>gnl|CDD|233047 TIGR00604, rad3, DNA repair helicase (rad3) Back     alignment and domain information 
 Score =  265 bits (678), Expect = 2e-75
 Identities = 195/804 (24%), Positives = 314/804 (39%), Gaps = 223/804 (27%)

Query: 25  VEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCK 83
           V FPY+  Y  Q  +M  +  +LDR        A+LE P+GTGK++SLL   LA+Q    
Sbjct: 4   VYFPYEKIYPEQRSYMRDLKRSLDRGD-----EAILEMPSGTGKTISLLSLILAYQ---- 54

Query: 84  LKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMT 143
                                         + +P                          
Sbjct: 55  ------------------------------QEKPEVRK---------------------- 62

Query: 144 PTIFYASRTHSQISQVISEYKKT-AYRVP---------MAVLASRKHYCTNKYVRDKEN- 192
             I YASRTHSQ+ Q   E +K  +YR P            LASRK+ C +  V  +   
Sbjct: 63  --IIYASRTHSQLEQATEELRKLMSYRTPRIGEESPVSGLSLASRKNLCLHPEVSKERQG 120

Query: 193 --IDEECKLLLGDRN----------LGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNV 240
             ++ +C  L   +             C  ++N  ++R    L      E+ DIEDLV  
Sbjct: 121 KVVNGKCIKLTVSKIKEQRTEKPNVESCEFYENFDELREVEDLLLS---EIMDIEDLVEY 177

Query: 241 GQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIAR 300
           G+++  C Y+A R M   A +V  PY Y+++P IR A+ +++K +I+I DEAHN++++  
Sbjct: 178 GELLGLCPYFATRKMLPFANIVLLPYQYLLDPKIRSAVSIELKDSIVIFDEAHNLDNVCI 237

Query: 301 DAGSVDIDE-----------------------------DVLLKLQMELEQVCSVNPM-IY 330
            + S ++                               D L KL   L+Q   +    I+
Sbjct: 238 SSLSSNLSVRSLKRCSKEIAEYFEKIEERKEVDARKLLDELQKLVEGLKQEDLLTDEDIF 297

Query: 331 QPLIEMTQD-----LVGWIERRKATLAKREFQHFFS--CWTGDKALRELQEANISRQCFP 383
                + ++     + G I  R A +    F H  S        AL+ L   +     F 
Sbjct: 298 LANPVLPKEVLPEAVPGNI--RIAEI----FLHKLSRYLEYLKDALKVLGVVSELPDAFL 351

Query: 384 ILLECATKAIKEATDTESELPHLSGMSVITLEGLFSSLTYFFSRN---GSHVSDYQLALQ 440
             L+  T   +        L +L     IT    FS+L   F+      ++ + +   ++
Sbjct: 352 EHLKEKTFIDRPLRFCSERLSNLLRELEITHPEDFSALVLLFTFATLVLTYTNGFLEGIE 411

Query: 441 KYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAELSLSIILTSGTLSPMNSFSSELGVQF 500
            Y  +   NP       L   CL+P++  K + E   S+IL SGTLSP+++F   LG   
Sbjct: 412 PYENKTVPNP------ILKFMCLDPSIALKPLFERVRSVILASGTLSPLDAFPRNLGFNP 465

Query: 501 GTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYK---------------------TADG 539
            +     H++     +LT +++ G D  PL+++++                       DG
Sbjct: 466 VSQDSPTHILK-RENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKIIPDG 524

Query: 540 -------YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGS 592
                  Y  +E + + W+E G    +  KK +FVE K   +      L+ Y        
Sbjct: 525 IVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETS--DALERY-------- 574

Query: 593 KCAVVRKKRVKREGNNDLNTIESQENANKKGASFLAVCRGK---------------IVVG 637
                                  Q  +  +GA  L+V  GK               I+VG
Sbjct: 575 ----------------------KQAVSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVG 612

Query: 638 IPFPNINDIQVSLKKKY-NDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAI 696
           IP+       +  + ++  D Y   +N     ++Y   A RA+NQAIGR IRH+ DYG+I
Sbjct: 613 IPYEYTESRILLARLEFLRDQYPIREN----QDFYEFDAMRAVNQAIGRVIRHKDDYGSI 668

Query: 697 ILLDERFQEERNRAHISKWLRKSI 720
           +LLD+R+     R  + KW++ +I
Sbjct: 669 VLLDKRYARSNKRKKLPKWIQDTI 692

All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 705
>gnl|CDD|219153 pfam06733, DEAD_2, DEAD_2 Back     alignment and domain information
>gnl|CDD|214693 smart00488, DEXDc2, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|224120 COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|222037 pfam13307, Helicase_C_2, Helicase C-terminal domain Back     alignment and domain information
>gnl|CDD|214694 smart00491, HELICc2, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|224120 COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233398 TIGR01407, dinG_rel, DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1269
KOG1132945 consensus Helicase of the DEAD superfamily [Replic 100.0
KOG1133821 consensus Helicase of the DEAD superfamily [Replic 100.0
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 100.0
KOG1131755 consensus RNA polymerase II transcription initiati 100.0
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 100.0
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 100.0
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 100.0
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 100.0
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 100.0
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 100.0
smart00488289 DEXDc2 DEAD-like helicases superfamily. 100.0
smart00489289 DEXDc3 DEAD-like helicases superfamily. 100.0
PF06733174 DEAD_2: DEAD_2; InterPro: IPR010614 This represent 99.97
smart00491142 HELICc2 helicase superfamily c-terminal domain. 99.93
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 99.91
smart00492141 HELICc3 helicase superfamily c-terminal domain. 99.89
KOG1132945 consensus Helicase of the DEAD superfamily [Replic 99.04
PF04851184 ResIII: Type III restriction enzyme, res subunit; 98.8
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 98.76
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 98.69
smart00487201 DEXDc DEAD-like helicases superfamily. 98.49
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 98.49
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 98.49
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 98.48
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 98.46
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 98.39
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 98.36
TIGR00643630 recG ATP-dependent DNA helicase RecG. 98.36
PTZ00110545 helicase; Provisional 98.33
PTZ00424401 helicase 45; Provisional 98.31
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 98.31
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 98.3
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 98.21
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 98.14
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 98.13
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 98.12
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 98.09
PRK01172674 ski2-like helicase; Provisional 98.06
PRK09694878 helicase Cas3; Provisional 97.99
PRK13767876 ATP-dependent helicase; Provisional 97.96
PRK02362737 ski2-like helicase; Provisional 97.93
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 97.92
PRK106891147 transcription-repair coupling factor; Provisional 97.84
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 97.8
PRK00254720 ski2-like helicase; Provisional 97.79
PRK13766773 Hef nuclease; Provisional 97.72
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 97.7
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 97.69
PRK094011176 reverse gyrase; Reviewed 97.62
PRK05580679 primosome assembly protein PriA; Validated 97.54
PRK14701 1638 reverse gyrase; Provisional 97.51
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 97.5
TIGR010541171 rgy reverse gyrase. Generally, these gyrases are e 97.44
KOG0354746 consensus DEAD-box like helicase [General function 97.39
COG1204766 Superfamily II helicase [General function predicti 97.38
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 97.16
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 97.13
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 97.11
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 97.05
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 96.97
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 96.9
TIGR00595505 priA primosomal protein N'. All proteins in this f 96.77
PRK09200790 preprotein translocase subunit SecA; Reviewed 96.72
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 96.54
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 96.5
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 96.49
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 96.44
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 96.25
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 96.23
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 96.21
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 96.03
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 95.96
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 95.86
COG4889 1518 Predicted helicase [General function prediction on 95.64
PHA02558501 uvsW UvsW helicase; Provisional 95.57
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 95.44
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 95.3
PRK04914956 ATP-dependent helicase HepA; Validated 95.3
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 95.22
COG1201814 Lhr Lhr-like helicases [General function predictio 95.12
PRK12904830 preprotein translocase subunit SecA; Reviewed 95.06
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 95.04
COG1205851 Distinct helicase family with a unique C-terminal 94.94
PHA02653675 RNA helicase NPH-II; Provisional 94.51
KOG1803649 consensus DNA helicase [Replication, recombination 94.49
PF1324576 AAA_19: Part of AAA domain 94.4
COG45811041 Superfamily II RNA helicase [DNA replication, reco 93.85
KOG18051100 consensus DNA replication helicase [Replication, r 93.71
COG4096875 HsdR Type I site-specific restriction-modification 93.69
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 93.54
PLN031421033 Probable chromatin-remodeling complex ATPase chain 93.52
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 93.31
COG1200677 RecG RecG-like helicase [DNA replication, recombin 93.27
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 93.13
COG1202830 Superfamily II helicase, archaea-specific [General 93.02
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 93.0
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 92.85
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 92.08
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 91.41
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 91.32
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 90.74
TIGR00376637 DNA helicase, putative. The gene product may repre 90.57
PRK11664812 ATP-dependent RNA helicase HrpB; Provisional 90.23
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 89.91
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 89.5
KOG0346569 consensus RNA helicase [RNA processing and modific 89.39
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 89.26
TIGR01970819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 88.86
KOG0334997 consensus RNA helicase [RNA processing and modific 88.29
smart0049082 HELICc helicase superfamily c-terminal domain. 88.28
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 88.21
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 87.15
PHA02558501 uvsW UvsW helicase; Provisional 86.82
PRK10536262 hypothetical protein; Provisional 86.79
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 86.66
KOG0343758 consensus RNA Helicase [RNA processing and modific 85.78
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 85.75
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 85.14
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 85.02
PHA02244383 ATPase-like protein 84.44
PRK13531498 regulatory ATPase RavA; Provisional 83.46
COG0714329 MoxR-like ATPases [General function prediction onl 83.43
PRK13107908 preprotein translocase subunit SecA; Reviewed 83.27
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 82.82
PRK13407334 bchI magnesium chelatase subunit I; Provisional 82.47
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 82.41
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 82.22
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 81.81
COG11101187 Reverse gyrase [DNA replication, recombination, an 81.51
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 81.44
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 80.85
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 80.78
PRK15483986 type III restriction-modification system StyLTI en 80.57
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 80.54
COG11971139 Mfd Transcription-repair coupling factor (superfam 80.25
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=8.1e-131  Score=1176.42  Aligned_cols=830  Identities=40%  Similarity=0.672  Sum_probs=646.5

Q ss_pred             CCCCCCCCceeeCCeeecCCCCCCHHHHHHHHHHHHHHHhhhcCCcceEEEECCCCCchhHHHHHHHHHHHHHhhhhhhh
Q 000814            9 PNYRKPLNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQL   88 (1269)
Q Consensus         9 ~~~~~~~~~f~i~Gi~v~FPY~PYp~Q~e~M~~V~~aL~~~~~~G~~~~LlESPTGTGKTLalL~~ALaw~~~~k~~~~~   88 (1269)
                      +++.+|+.++.+ |+.|+|||+||+.|+.||.+|+++|++++     ++++||||||||||+|||++|+|+++++.+.+.
T Consensus         1 ~~s~~~~~~i~~-Gv~V~fP~qpY~~Q~a~M~rvl~~L~~~q-----~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~   74 (945)
T KOG1132|consen    1 LNSKMPKIVINI-GVPVEFPFQPYPTQLAFMTRVLSCLDRKQ-----NGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPK   74 (945)
T ss_pred             CCCCCcceEecc-CceeeccCCcchHHHHHHHHHHHHHHHhh-----hhhccCCCCCCccHHHHHHHHHHHHHhhccccc
Confidence            367888988888 99999999999999999999999999986     799999999999999999999999998877655


Q ss_pred             ccccCCCCCcccccCcCCCCCCCCCCCCCCCCCCCCchhhHHHhhhcccccccCCCeEEEeccchhhHHHHHHHHHhcCC
Q 000814           89 ANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFYASRTHSQISQVISEYKKTAY  168 (1269)
Q Consensus        89 ~~v~~~~~~~~~~~~p~~~~~~~~~e~~~St~~~s~~lq~~~~~~~~~~~~~k~~pKIiYaSRTHSQLsQvIrELRk~~~  168 (1269)
                      +.+.+.+             .+|+| +.++..+++.+.+..++     .+....+|||||+||||+||+|||+|||+|+|
T Consensus        75 ~~~s~~~-------------~~~~p-~~~s~~~g~~s~e~~e~-----~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y  135 (945)
T KOG1132|consen   75 GKISERK-------------AGFIP-TQPSDSGGEKSEEAGEP-----IACYTGIPKIYYASRTHSQLTQVVRELRRTGY  135 (945)
T ss_pred             cchhhhh-------------ccccC-CCCccCCCCchhhhcCc-----cccccCCceEEEecchHHHHHHHHHHHhhcCC
Confidence            5554433             13555 45555445544433221     12334699999999999999999999999999


Q ss_pred             CccEEEEcccccccccccccccc---ChHHHHHHhhcCCCCCCchhhhhhhhcCCCCcCCCCCCcccChhhHHhhccccc
Q 000814          169 RVPMAVLASRKHYCTNKYVRDKE---NIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVR  245 (1269)
Q Consensus       169 ~v~~~vL~SR~~~Cin~~v~~~e---~i~e~C~~L~~~~~~~C~yy~n~~~~~~~~~l~~~~~~~v~DiEdL~~~g~~~~  245 (1269)
                      +++|+||+||+|||+|++|++..   +.++.|+++..+  ..|.||......    .+....-.+++|||||+++|+...
T Consensus       136 ~vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~--~~C~f~~~~~~~----sl~~~l~~~i~DIEDLVk~Gk~~~  209 (945)
T KOG1132|consen  136 RVKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKS--RSCHFYKIVEEK----SLQPRLHDEIFDIEDLVKIGKKSR  209 (945)
T ss_pred             CCceEEeecchhhccCHHHhhhhcchhhhhHHHhhccc--cccccccccccc----ccccccCCCcccHHHHHHhCccCc
Confidence            99999999999999999887653   235789998853  679988554433    344434456999999999999999


Q ss_pred             CcHHHHHHHHhccCcEEEecccccccHhhhhhhccCCCccEEEecccccHHHHHHHhcccccCHHHHH---HHHHHHHHh
Q 000814          246 GCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLL---KLQMELEQV  322 (1269)
Q Consensus       246 ~CPYy~aR~~a~~ADIVV~nYnyLld~~iR~~l~i~l~~~ivIfDEAHNLed~a~d~~S~~IS~~~L~---~a~~eL~~l  322 (1269)
                      .||||.+|++.++|||||||||||+||.+|++++++++++|||||||||||+.|++..|++++..+|.   .+..++.+.
T Consensus       210 ~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~LknsIVIfDEAHNiEdic~esaS~~lts~~l~~~~~l~~e~~~~  289 (945)
T KOG1132|consen  210 GCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKNSIVIFDEAHNIEDICRESASFDLTSSDLASGLELINELEQA  289 (945)
T ss_pred             CCcchhhhhhcccCcEEEechhhhcCHhhhccccccccccEEEEeccccHHHHHhhcccccccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999966655   566777777


Q ss_pred             hccCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHccccchhHHHHHHHHHHHHHHhhccccc
Q 000814          323 CSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANISRQCFPILLECATKAIKEATDTESE  402 (1269)
Q Consensus       323 ~~~~~~i~~~L~ell~~Ll~~L~~~k~~l~k~~~~~~~~~~~g~~~l~~L~e~~is~~~~~~Lle~l~k~I~~~~~~e~~  402 (1269)
                      ....+.++.++.++..++..||+...+.+.+....+++..|.+++++..+...|++...+++|.+++.+++......+..
T Consensus       290 ~~~~~~~~~pl~ev~~~l~s~l~~~~e~La~l~~~~~~~~~~~d~~~~~~~~~giT~~~~~~l~e~~~~a~~t~e~~~~i  369 (945)
T KOG1132|consen  290 VTKAAAIYEPLREVSLDLISWLELELEDLAKLKEILLFLEEAIDKVLLPLDDSGITRPGSPILYEEFAKALITSETAEKI  369 (945)
T ss_pred             HhhhhhhcCchhhhhhccchhhhcchHHHHHHHHHHHHhhhhcchhccccccccccCCCcHHHHHHHHHhccCccccccc
Confidence            66666677888899999999998777778887777788889999888888888899888888888887654321111100


Q ss_pred             -------cCccCC---------chHHHHHHHHHHHHHHHh---cCCCcchhhHHHhhh---hee-cCC-----CCCCCCc
Q 000814          403 -------LPHLSG---------MSVITLEGLFSSLTYFFS---RNGSHVSDYQLALQK---YIK-RDS-----KNPGGNW  454 (1269)
Q Consensus       403 -------~~~ls~---------~s~~~Le~l~~~L~~~~s---~~~~~i~dy~~~l~r---~i~-~d~-----~~~~~~~  454 (1269)
                             ..++.+         .+...+  +.+.+.++++   .++....++.+....   |.. .+.     +.....|
T Consensus       370 ~~~~~~~v~~le~~~q~~~t~~~s~~~~--~~dlld~~fs~~~~~g~~~~~~~~~~e~s~~~~~~~d~~~~~~~~~~~v~  447 (945)
T KOG1132|consen  370 VDSLDIAVQHLEGEKQGTATNTGSLWCI--FADLLDISFSVILQNGSFSSDASFSVEQSYSFGNHLDAPHVINANLGDVW  447 (945)
T ss_pred             hhhHHHHHHHhhcccccchhcccchHHH--HHHHHHHHhhccccCCccccchhhhhhhhhcccccCCccccccccccccc
Confidence                   011110         011101  1233444444   333322222111111   100 000     0001112


Q ss_pred             ----------ceEEEEEecCHHHHHHHHHhc-cCeEEEecccCCChHhhHHhhCCCCCceeeCCCccCCCCcEEEEEccc
Q 000814          455 ----------THTLSLWCLNPAVVFKDVAEL-SLSIILTSGTLSPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVIST  523 (1269)
Q Consensus       455 ----------~~~L~l~CLdPs~~f~~l~~~-~rSVILTSGTLSPl~~F~~eLGl~f~~~Le~phvi~~e~qvlv~vvs~  523 (1269)
                                ...+++||++|+..|++++.+ .++||||||||+|++.|..+||++|+..+|+||+|+. .|+|+.+|.+
T Consensus       448 ~~~~s~~~~~~~vi~~wcf~p~~sf~d~~~k~vrsIiLtSGTLsP~~s~~~El~~~f~~~lEn~hii~~-~qv~~~vv~~  526 (945)
T KOG1132|consen  448 KGKSSRKLGNYPVINFWCFSPGYSFRDLLGKGVRSIILTSGTLSPMDSFASELGLEFKIQLENPHIINK-SQVWVGVVPK  526 (945)
T ss_pred             ccccccccCcccceeeeecCcchhHHHHhcccceeEEEecccccCchhHHHHhCCccceeeecchhccc-cceEEEeecc
Confidence                      145889999999999999987 7999999999999999999999999999999999985 5999999999


Q ss_pred             CCCCccccccccccc----------------------------hHHHHHHHHHHHHHcCccchhccCCcEEEecCCCCHH
Q 000814          524 GPDNYPLNASYKTAD----------------------------GYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQE  575 (1269)
Q Consensus       524 gP~n~~l~~Sy~~~d----------------------------sY~~Le~l~~~w~e~g~~srI~~~K~IFvEpr~~s~~  575 (1269)
                      ||.+..+..+|..++                            +|.+|+++.+.|+..+.|.++...|++++|||.  +.
T Consensus       527 Gp~~~ql~sty~nr~~~ey~~~lg~~i~~v~rvVp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr~--k~  604 (945)
T KOG1132|consen  527 GPDGAQLDSTYGNRFTPEYLSELGEAILNVARVVPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPRS--KS  604 (945)
T ss_pred             CCCccccccccccccCHHHHHHHHHHHHHHHhhcccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccCC--cc
Confidence            999999999887653                            299999999999999999999999999999995  45


Q ss_pred             HHHHHHHHHHHHhhcCCchhhhhhhhhhccCCCCcchhhhhhhcccCCcEEEEeeccceeecccCCCCCceEEEE-----
Q 000814          576 DFEIVLKHYYNSISQGSKCAVVRKKRVKREGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSL-----  650 (1269)
Q Consensus       576 e~e~vL~~f~~sI~qg~~~~~~~~~~~kk~~~~~~~~~e~~~~s~~~GAVLfAV~rGKfSEGIDF~dd~lR~VII-----  650 (1269)
                      +|.++|..|+++|. .                           +...|++||||||||+||||||+|+.+|+|||     
T Consensus       605 ~f~e~m~~y~~~i~-~---------------------------pes~ga~~~aVcRGKVSEGlDFsD~~~RaVI~tGlPy  656 (945)
T KOG1132|consen  605 EFTEVMSRYYNAIA-D---------------------------PESSGAVFFAVCRGKVSEGLDFSDDNGRAVIITGLPY  656 (945)
T ss_pred             chHHHHHHHHHHhh-C---------------------------ccccceEEEEEecccccCCCCccccCCceeEEecCCC
Confidence            79999999998772 1                           12359999999999999999999999999999     


Q ss_pred             ----------eccccchhhhhcc----cCCCCcchHHHHHHHHHHhcCcccccCCCeEEEEEEeccccchhhHhHHHHHH
Q 000814          651 ----------KKKYNDTYRSSKN----LLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWL  716 (1269)
Q Consensus       651 ----------K~~y~d~~~~sk~----~~~G~~wY~~~AmRaVNQAIGRvIRhk~DyGvIILLD~Rf~~~~yr~~Lp~Wl  716 (1269)
                                |+.|+|.+...+.    .+.|.+||..+|+|||||||||+|||++|||+|+|+|.||.+..-+..+|+|+
T Consensus       657 P~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D~Rfe~~~~~~~lskw~  736 (945)
T KOG1132|consen  657 PPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCDDRFENADARSQLSKWI  736 (945)
T ss_pred             CCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEeechhhcCccccccchhh
Confidence                      6678777665443    56799999999999999999999999999999999999999887777789997


Q ss_pred             HhhcccCCChhhhHHHHHHHHHHhhcccCccccccccCCCCCcCCCCccccchhhhhhcccccccCCCCCCcccccccCC
Q 000814          717 RKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSSMDQCKEVTKQNTQELNKSDHSGQNVQSISKYD  796 (1269)
Q Consensus       717 r~~l~~~~~f~~~l~~l~~FF~~~k~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  796 (1269)
                      |...                                                                            
T Consensus       737 r~~~----------------------------------------------------------------------------  740 (945)
T KOG1132|consen  737 RSVK----------------------------------------------------------------------------  740 (945)
T ss_pred             hccc----------------------------------------------------------------------------
Confidence            6300                                                                            


Q ss_pred             CCccccccCccceeccccccCCCchhhhhhhhhccCCCCCccccCCCCcccccccccCCCCCcccccccccccCCCCCCc
Q 000814          797 PFSHQKSQGNFEVQTSLQTDQNNSCIEYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKYDSFPGLNL  876 (1269)
Q Consensus       797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  876 (1269)
                                                                                                      
T Consensus       741 --------------------------------------------------------------------------------  740 (945)
T KOG1132|consen  741 --------------------------------------------------------------------------------  740 (945)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhhhhhhcccccccccccccccccCCCCccccccCCCCCCCCccccccccccCCCCCCcccCCCCcCCCCCCcchh
Q 000814          877 LDEVEVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSMPFSNEDPELLLVKETPAMDDNNTMASPGSLSKDGNSSSTI  956 (1269)
Q Consensus       877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  956 (1269)
                                               ||    +|+|+                                            
T Consensus       741 -------------------------~~----~~~~~--------------------------------------------  747 (945)
T KOG1132|consen  741 -------------------------CD----SRYCE--------------------------------------------  747 (945)
T ss_pred             -------------------------cc----ccccc--------------------------------------------
Confidence                                     00    11111                                            


Q ss_pred             hcccCCCCCccccccccccCCCCCCCCCCCCccccccccccCCCCCCCCCCCCccccccchhhhhhccCCCCCchhhhhh
Q 000814          957 FQASTQSPDQLSVHSQSLTNPVRVPSSAQPEMVVTPEKEVTGDTSNLPPERDSSLSSSVNSHTQKRRKTMVSPSVDLMLM 1036 (1269)
Q Consensus       957 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1269)
                                                                                                      
T Consensus       748 --------------------------------------------------------------------------------  747 (945)
T KOG1132|consen  748 --------------------------------------------------------------------------------  747 (945)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hcccccccccccccccccccccCCCCcccccccCCcccccccceeeeccccCCCCCCCCCeeeEEeecCchhHHHHHHHh
Q 000814         1037 ASREANRRIEFNSETNYVKNKSKTSNNCAESHLSSTPVMDKTLQISCSLCRSPLGLPENHLYVRCSVTSSAKAHLVSLLK 1116 (1269)
Q Consensus      1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1116 (1269)
                                                                  +.|++|+...++++|+-+-.|..+.+.+.+...|++
T Consensus       748 --------------------------------------------~~~~~~r~~r~~~~nn~~~~~~~~~~~~~~~l~~v~  783 (945)
T KOG1132|consen  748 --------------------------------------------VISSLARKFRTHRSNNSATLVTEQENNITSPLLLVK  783 (945)
T ss_pred             --------------------------------------------ccchhhhhhhcccccccccccchhhcccccchhhhh
Confidence                                                        223333333344444444444444444444444444


Q ss_pred             hhhccccCcccccEEeccchhhhhhhhccccCCCCCCcccccCCCeeeecccccCCCCCCCceee-EEEeecchhHHHHH
Q 000814         1117 QRQELCANVTSIPVIMTDISSVDQLLTNQSFGGASGQGIWCEEDGCVYNTLFCPFCSSPSNCLGV-QIVASNALNFQLLN 1195 (1269)
Q Consensus      1117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 1195 (1269)
                      ..-...+  ..++|.++++|.+||++|+ +++.+.++|.||..|||||++++||||+.||+|+|+ |||++|++|+|++.
T Consensus       784 ~t~~~p~--k~~~v~~s~~s~~~~~~a~-k~e~~~~~~~W~~~~~~~~~~~~k~~~s~P~~~~~~~~v~~~ds~~~q~~s  860 (945)
T KOG1132|consen  784 STEDSPS--KNVGVPQSECSRVEAPLAN-KAEKLNGQGKWVRQDGCVFLTILKPFGSIPNTCLGMKQVKSYDSEFVQFLS  860 (945)
T ss_pred             hcccCcc--cccccccchhhhhcchhhc-cchhcccccceeecCcccccccccccccCCccccchhheeeccCcchhhhh
Confidence            4333222  5788999999999999999 999999999999999999999999999999999998 99999999999999


Q ss_pred             hhhhhcccccccccCCccccccc--CCCCCccCccccchhhccccccccc-CccccCCCccccccc
Q 000814         1196 KILFYLDRLEIRIPESGKFKSEA--KDSSPITHSAMDKVAAFSCIEKFSY-SPILEDSGGWRSTKS 1258 (1269)
Q Consensus      1196 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 1258 (1269)
                      +|++|.|++|+++++++.-....  +.--|...-.+.++..+.+.|.++| ..+++-..||+..+.
T Consensus       861 ~il~f~~~~e~~~~a~~~~t~~l~~k~~~~~~~~~~~~S~~~~~~~~~~f~~~l~~~~~~~~~~~~  926 (945)
T KOG1132|consen  861 SILFFISVREVTISAAKENTTGLKKKSKLPESIKSALSSELLSSEDYKAFGTYLQQYKKGERKLKN  926 (945)
T ss_pred             hhHHHHhHHHhhccCCCcccccccccccCCcccccccchhhcCchhHHHHhHhHHHhcccccchhh
Confidence            99999999999999888444221  2211222334556678888999998 777888889988775

>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>PRK13531 regulatory ATPase RavA; Provisional Back     alignment and domain information
>COG0714 MoxR-like ATPases [General function prediction only] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK13407 bchI magnesium chelatase subunit I; Provisional Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1269
2vsf_A602 Structure Of Xpd From Thermoplasma Acidophilum Leng 6e-08
4a15_A620 Crystal Structure Of An Xpd Dna Complex Length = 62 7e-08
>pdb|2VSF|A Chain A, Structure Of Xpd From Thermoplasma Acidophilum Length = 602 Back     alignment and structure 
Iteration: 1

 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 25/205 (12%)
Query: 122 PSTNGQTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVISEYKK--TAYRVPMAVLASRK 179
           P+ +G+T                 + Y  RT+SQ  QVI E +   +  ++    +  R 
Sbjct: 12  PTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGRV 71
Query: 180 HYCT-NKYVRDKENIDEE-----CKL----LLGDRNLGCPQFKNVHKVRGHPSLQKGGCH 229
           + C   + V D   I+ E     C +    ++      CP F    K+R   + ++    
Sbjct: 72  NMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFN--FKIRSDET-KRFLFD 128
Query: 230 EVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAME-------VDI 282
           E+   E+  + G+    C Y + ++   DA +V  PY+Y +N   R   E       V  
Sbjct: 129 ELPTAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLN---RSVAEKFLSHWGVSR 185
Query: 283 KGAILILDEAHNIEDIARDAGSVDI 307
              ++ILDEAHN+ DI R  GS  I
Sbjct: 186 NQIVIILDEAHNLPDIGRSIGSFRI 210
>pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex Length = 620 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1269
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 1e-94
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 4e-81
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 1e-74
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 7e-04
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Length = 620 Back     alignment and structure
 Score =  316 bits (811), Expect = 1e-94
 Identities = 132/761 (17%), Positives = 228/761 (29%), Gaps = 203/761 (26%)

Query: 29  YQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQL 88
           Y+    Q+  +  + S+L ++         LESPTG+GK++  L S L +    K     
Sbjct: 2   YENRQYQVEAIDFLRSSLQKSY-----GVALESPTGSGKTIMALKSALQYSSERK----- 51

Query: 89  ANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFY 148
                                              TN Q  QV    +++          
Sbjct: 52  ---------------------------LKVLYLVRTNSQEEQVIKELRSLSS-------- 76

Query: 149 ASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVR------DKENIDEECKLLLG 202
                               ++    +  R + C    +       + E++ + C +   
Sbjct: 77  ------------------TMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKR 118

Query: 203 DRNLG----CPQFKN-VHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMAD 257
           +   G    CP F   +        L      E+   E+  + G+    C Y + ++   
Sbjct: 119 EVMAGNEAACPYFNFKIRSDETKRFLF----DELPTAEEFYDYGERNNVCPYESMKAALP 174

Query: 258 DAQLVFCPYSYIINPVIR----GAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLL 313
           DA +V  PY+Y +N  +         V     ++ILDEAHN+ DI R  GS  I  + L 
Sbjct: 175 DADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLN 234

Query: 314 KLQMELEQVCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQ 373
           +   E +           P +     +   IE       +   Q   S   G   +R   
Sbjct: 235 RADREAQA-------YGDPELSQKIHVSDLIEM-----IRSALQSMVSERCGKGDVRIRF 282

Query: 374 EANISRQCFPILLECATKAIKEATDTESELPHLSGMSVITLEGLFSSLTYFFSRNGSH-V 432
           +  +      I+ + + + I+   +    L           E +      + S   S  +
Sbjct: 283 QEFMEY--MRIMNKRSEREIRSLLN---YLYLFGEYVENEKEKVGKVPFSYCSSVASRII 337

Query: 433 SDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAELSLSIILTSGTLSPMNSF 492
           +      +KY    S   GG     +   CL+P+ + + + E     I  SGTL P + +
Sbjct: 338 AFSDQDEEKYAAILSPEDGG----YMQAACLDPSGILEVLKE--SKTIHMSGTLDPFDFY 391

Query: 493 SSELGVQFGTCLEAPHVID---VDLQVLTSVISTGPDNYP----------LNASYKTADG 539
           S   G +     +   +       +     V S                  +   K    
Sbjct: 392 SDITGFEI-PFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKN 450

Query: 540 -------YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGS 592
                  Y LM+++ NR                  E +G  Q++   +LK +        
Sbjct: 451 TIVYFPSYSLMDRVENRVSF-----------EHMKEYRGIDQKELYSMLKKFR------- 492

Query: 593 KCAVVRKKRVKREGNNDLNTIESQENANKKGASFLAVCRGK---------------IVVG 637
                                       +   +  AV  G+               I+ G
Sbjct: 493 ----------------------------RDHGTIFAVSGGRLSEGINFPGNELEMIILAG 524

Query: 638 IPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAII 697
           +PFP  + I  SL   Y   Y                    + Q IGR IR   D GA +
Sbjct: 525 LPFPRPDAINRSLFDYYERKYGK-----GWEYSVVYPTAIKIRQEIGRLIRSAEDTGACV 579

Query: 698 LLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFR 738
           +LD+R  + R      K++    K  D        + +FF 
Sbjct: 580 ILDKRAGQFR------KFIPDMKKTSDPASD----IYNFFI 610
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Length = 551 Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Length = 540 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1269
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 98.86
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 98.75
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 98.66
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 98.58
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 98.54
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 98.53
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 98.35
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 98.33
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 98.28
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 98.26
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 98.16
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 98.14
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 98.0
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 97.9
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 97.8
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 97.75
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 97.67
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 97.63
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 97.54
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 97.02
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 95.79
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 94.69
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 94.66
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 93.2
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 92.9
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 92.69
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 92.03
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 90.72
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 90.46
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 89.16
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 88.99
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 88.14
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 87.35
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 87.31
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 86.92
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 85.99
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 85.7
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 84.21
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 84.0
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 82.93
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 82.8
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 82.73
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 82.71
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 80.92
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 80.36
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.86  E-value=1.1e-08  Score=71.46  Aligned_cols=68  Identities=19%  Similarity=0.238  Sum_probs=50.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99998999999999999985210796108997778984468999999999998110110001247999852235767799
Q 000814           29 YQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLANG  108 (1269)
Q Consensus        29 y~pYp~Q~e~M~~V~~aL~~~~~~G~~~allESPTGTGKTLALL~sALa~~~~~k~~~~~~~v~~~k~~~~~~~~p~~~~  108 (1269)
                      ++||+.|++.+...    ..      .+.|+.+|||+|||+..+.++......                           
T Consensus         8 ~~pr~~Q~~~~~~~----~~------~n~lv~~pTGsGKT~i~~~~~~~~~~~---------------------------   50 (200)
T d1wp9a1           8 IQPRIYQEVIYAKC----KE------TNCLIVLPTGLGKTLIAMMIAEYRLTK---------------------------   50 (200)
T ss_dssp             HCCCHHHHHHHHHG----GG------SCEEEECCTTSCHHHHHHHHHHHHHHH---------------------------
T ss_pred             CCCCHHHHHHHHHH----HC------CCEEEEECCCCCHHHHHHHHHHHHHHH---------------------------
T ss_conf             89889999999999----63------996999189972889999999999970---------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHC
Q ss_conf             9988888999999999603578852100111369994999645544699999999830
Q 000814          109 GGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFYASRTHSQISQVISEYKKT  166 (1269)
Q Consensus       109 ~~~~~e~~~St~~~t~~lq~~~~~~~~~~~~~~~~pkIiYaSRTHSQLsQvI~ELRkl  166 (1269)
                                                       ...+++|.+.|.+-..|..+++++.
T Consensus        51 ---------------------------------~~~~il~i~P~~~L~~q~~~~~~~~   75 (200)
T d1wp9a1          51 ---------------------------------YGGKVLMLAPTKPLVLQHAESFRRL   75 (200)
T ss_dssp             ---------------------------------SCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred             ---------------------------------CCCCEEEECCCHHHHHHHHHHHHHH
T ss_conf             ---------------------------------6981899737057777889999986
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure