Citrus Sinensis ID: 000847

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250-----
MFTPQRRPIPATKLTPRGTEAQSSGAISNARNIKGKAVAFAETQSVPPPPPVNSLLDYNSGSATVFPAESEDDWRRFREAGLLDEATMERKDREALMEKVSKLEKELYDYQYNMGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSGGHMSWLRKCTSKIFSISPIKKSEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGYSIPEDEPQSSFRLVNDSTNREMDDEYAPSVDGHSYMDSKVEDVAEDSQQSELRSGKRRPGRKRKSGVNRTRSVKAAVEDAKLFLGESPEGAGLNASFQAHEDSQGISSHTQEASNMAKKRRRPQTSKTTQSEKDGADSEGYSDSVTAGGGRRKRHQTVATVSQTPGERRYNLRRHKTSSAVLALEASADLSKANKTVAEVTNPVEVVSNPKSASTFPPAVLNENGKSTHLVQVTSVKSMELSRDRAVRFKSTTNIVDENADAPKSIENTVLSEEVNGTSEYVDEDENGGRVLEDEEDDDDDSDHPGEASIGKKLWNFFTS
ccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHccccccccccccccHHHHHHccccccccHHHcccccccccccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHcHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHcccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHcHcHccccccccccccccHHHHccccccccccHHHHHHHHHHHHccccHHcccccHHcccccccccccccHHHHHHHccccccHHHHHHHHcccccccccHHHHccccccEEEEccccccHHHHcccHHHHccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccHcccccccccccccccccccccccccccHHHHHHcccHHHcEEHcccccccccccccccccccHHHHHEEccccccccccccEcccccccHcHHHHHHHcccHHHHcHcHccccccccccccccccccccccccccccccEEEEEEEEcccccccccccEcccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHHHHHHccc
mftpqrrpipatkltprgteaqssgaisnaRNIKGKAVAFaetqsvpppppvnslldynsgsatvfpaesedDWRRFREaglldeatMERKDREALMEKVSKLEKELYDYQYNMGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANtllggiegkslEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKERVGFLAYLIYLLYFICAyslpsfsynVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISnlqlpddearndiplpqvAERClgnrqgdvaapydsnisnshggmnlgradsgghmswlrKCTSkifsispikksehistsmleeeepqsavptimqekaegpgvlvskeaigysipedepqssfrlvndstnremddeyapsvdghsymdskvedvAEDSQQSelrsgkrrpgrkrksgvnrtRSVKAAVEDAKLflgespegaglnasfqahedsqgissHTQEASNmakkrrrpqtskttqsekdgadsegysdsvtagggrrkrhqtvatvsqtpgerrynlrrhktSSAVLALEASADLSKANKTvaevtnpvevvsnpksastfppavlnengkstHLVQVTSVKSMELSRDRAVRFKsttnivdenadapksientvlseevngtseyvdedenggrvledeedddddsdhpgeasigKKLWNFFTS
mftpqrrpipatkltprgteaqssgaisnaRNIKGKAVAFAETQSVPPPPPVNSLLDYNSGSAtvfpaeseddwRRFREaglldeatmerkdREALMEKVSKLEKELYDYQYNMGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERaqtklfsektltdanTLLGGIEGKSLEVEEKFHAAEAKlaevnrksselemklqelesresvikrerlslvtereaheaafykqredlREWEKKLQIGDERLSELrrtlnqrevkanenerilkqkerdleelekkidlsssklkeredeinsrlaelvvkERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMrskisaldqqefeishreeklerreqaldkksdrvkekendlaarlksvkerekfvkaeekklelekqkliadkeslQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSaeerlkkeecamRDYVQREIEAIRLDKEAFEATMrheqlvlsekaknDRRKMLEEFEMQRMNQEaellnrrdKMEKELQErtrtfeekrervlNDIAHLKEVAEGEIQEIKSERdqlekekhevkvnreklqeqqlgmrkdidelDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSGGHMSWLRKCTSKifsispikksEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGysipedepqssfrLVNDSTNREMDDEYAPSVDGHSYMDSKVEDVAedsqqselrsgkrrpgrkrksgvnrtrsvkaaVEDAKLFLGESPEGAGLNASFQAHEDSQGISSHTqeasnmakkrrrpqtskttqsekdgadsegysdsvtagggrrkrhqtvatvsqtpgerrynlrrHKTSSAVLALEASADLSKANKTVAEvtnpvevvsnpksastfppavlnengksTHLVQVTsvksmelsrdravrfksttnivdenadapksientvlseevngtseyvdedenggrVLEDeedddddsdhpgeasigkklwnffts
MFTPQRRPIPATKLTPRGTEAQSSGAISNARNIKGKAVAFAETQSvpppppvNSLLDYNSGSATVFPAESEDDWRRFREAGLLDEATMERKDREALMEKVSKLEKELYDYQYNMGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKERVGflayliyllyficaySLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAkqqefeleleekrksieeemrsKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKERekfvkaeekklelekqklIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQertrtfeekrerVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSGGHMSWLRKCTskifsispikksEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGYSIPEDEPQSSFRLVNDSTNREMDDEYAPSVDGHSYMDSKVEDVAEDSQQSELrsgkrrpgrkrksgVNRTRSVKAAVEDAKLFLGESPEGAGLNASFQAHEDSQGISSHTQEASNMAKKRRRPQTSKTTQSEKDGADSEGYSDSVTAGGGRRKRHQTVATVSQTPGERRYNLRRHKTSSAVLALEASADLSKANKTVAEVTNPVEVVSNPKSASTFPPAVLNENGKSTHLVQVTSVKSMELSRDRAVRFKSTTNIVDENADAPKSIENTVLSEEVNGTSEYVDEDENGGRVLedeedddddsdHPGEASIGKKLWNFFTS
******************************************************************************************************LEKELYDYQYNMGLLLIEKKEWTSKIE**************************************************************************TLLGG*************************************************************************************************************************************RLAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLD**********************************************************************************************************ILKV*******************************************************************************************************************DYVQREIEAIRLD******************************************************************************************************************DIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQL*****************C*********************************MSWLRKCTSKIFSI*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KLWNFFTS
MFTPQRRPIPATKL*************SNARNIKGKAVAFAETQSVPPPPPVNSLLDYNSGSATVFPAESEDDWRRFREAGLLDEATMERKDREALMEKVSKLEKELYDYQYNMGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLS**********INSRLAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISH*************************LAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSGGHMSWLRKCTSKIFSISPIKKSEHI*************VPTIMQEKAEGPGVLVSKEAIGYSIPEDEPQSSFRLVNDSTNREMDDEYAPSVDGHSYMDSK*********************************VKAAVEDAKLFLGESPEGAGLNASF*******************************************************************PGERRYNLRRHKTSSAVLALEASADLSKANKTVAEVTNPVEVVSNPKSASTFPPAVLNENGKSTHLVQVTSVKSMELSRDRAVRFKSTTNIVDENADAPKSIENTVLSEEVNGTSEYVDEDENGGRVL*************GEASIGKKLWNFFTS
*******************************NIKGKAVAFAETQSVPPPPPVNSLL*******TVFPAESEDDWRRFREAGLLDEATMERKDREALMEKVSKLEKELYDYQYNMGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIP*********G******************************HMSWLRKCTSKIFSIS**************************************************************NREMD****************************************************************************************************************************************T****P**********KT*S*V********************************************KSTHLVQVTSVKSMEL*RDRAVRFKSTTNIVD*************************************************EASIGKKLWNFFTS
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFTPQRRPIPATKLTPRGTEAQSSGAISNARNIKGKAVAFAETQSVPPPPPVNSLLDYNSGSATVFPAESEDDWRRFREAGLLDExxxxxxxxxxxxxxxxxxxxxxxxxxxxMGLLLIExxxxxxxxxxxxxxxxxxxxxxxxxxxxHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRLSLVTEREAHEAAFYKQREDxxxxxxxxxxxxxxxxxxxxxLNQREVKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxINSRLAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKxxxxxxxxxxxxxxxxxxxxxKISALDQQEFEISHRxxxxxxxxxxxxxxxxxxxxxxxxLAARxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSGGHMSWLRKCTSKIFSISPIKKSEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGYSIPEDEPQSSFRLVNDSTNREMDDEYAPSVDGHSYMDSKVEDVAEDSQQSELRSGKRRPGRKRKSGVNRTRSVKAAVEDAKLFLGESPEGAGLNASFQAHEDSQGISSHTQEASNMAKKRRRPQTSKTTQSEKDGADSEGYSDSVTAGGGRRKRHQTVATVSQTPGERRYNLRRHKTSSAVLALEASADLSKANKTVAEVTNPVEVVSNPKSASTFPPAVLNENGKSTHLVQVTSVKSMELSRDRAVRFKSTTNIVDENADAPKSIENTVLSEEVNGTSEYVDEDENGGRVLEDEEDDDDDSDHPGEASIGKKLWNFFTS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1255 2.2.26 [Sep-21-2011]
Q9FLH01042 Putative nuclear matrix c no no 0.670 0.808 0.294 2e-77
>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1 Back     alignment and function desciption
 Score =  291 bits (745), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 262/891 (29%), Positives = 468/891 (52%), Gaps = 49/891 (5%)

Query: 46  VPPPPPVNSLLDYNSGSATVFPAESEDDWRRFREAGLLDEATMERKDREALMEKVSKLEK 105
            P     N L    +      P   E  W+R ++AG  DE +++ +D+ AL+  ++KLE 
Sbjct: 13  TPSTAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGF-DEQSIKNRDKAALIAYIAKLES 71

Query: 106 ELYDYQYNMGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRR 165
           E+YDYQ+NMGLLL+EK E +S+ EE++ S +E+     RE+SA++ A +EA+KRE++L++
Sbjct: 72  EVYDYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKK 131

Query: 166 ALSMEKQCVADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEA 225
            + + K+C++ LEK L +M  E A+TK+ +  T+++A+ ++     K  + E K  AAEA
Sbjct: 132 DVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEA 191

Query: 226 KLAEVNRKSSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQI 285
             AE NR     E KL+E+ESRE  + R   S  +E E  E     +R+ L E  K LQ 
Sbjct: 192 LQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQ 251

Query: 286 GDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKE-------REDE 338
             ERL + + +LNQRE      + I   + ++L ELEK +D + +  +E       ++  
Sbjct: 252 EHERLLDAQVSLNQRE------DHIF-ARSQELAELEKGLDTAKTTFEEERKAFEDKKSN 304

Query: 339 INSRLAELVVKERVGFLAYLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEK 398
           +   LA    +E V F ++   LL+ +  Y          +    +E+  L+     KE+
Sbjct: 305 LEIALALCAKREEVCFYSH-NSLLFLVLHYRSSKKFLGDKIAVSERESSLLK-----KEQ 358

Query: 399 RLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQ 458
            LL  EEK+ ++E   IQ +L +Q  IL  ++ + E ELE K KS+E E+ SK  A + +
Sbjct: 359 ELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELR 418

Query: 459 EFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKL 518
           E +I  RE+ +  +E  L+ +S  + EKE D+  +  ++ E+EK + A E+ +  +   L
Sbjct: 419 EVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTML 478

Query: 519 IADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYR 578
             +KE L+ L +E+ Q  +    +  ++    QKL+  + E SEL  L+ +LK++++  R
Sbjct: 479 EDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLR 538

Query: 579 HQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLK 638
            Q+  +L E + L+ ++ KFE EWE +D KR+E+ KE E I  +++          + +K
Sbjct: 539 AQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIK 598

Query: 639 KEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAE 698
           +E  A+R+  + ++E++  ++E F   M  E      K + +R   L   EMQ+   E  
Sbjct: 599 EERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYC 658

Query: 699 LLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKV 758
           + N+R+++E   ++R + FE++++     I  LKE+AE E++ ++ E  +L+ E+ E+K+
Sbjct: 659 IENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKL 718

Query: 759 NREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAF 818
           +RE+ + +   ++  ++EL +   +L   R   + E++     +E+    +N    +   
Sbjct: 719 DRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDM 778

Query: 819 VISNLQLPDDEARNDIPLPQVAERCLGNRQGDVAAPYD-------SNISNSHGGMNLG-- 869
            ++ +QL +        L +  E+    +Q  V+   +       S +SNS  G N    
Sbjct: 779 SMAKMQLSN--------LERSWEKVSALKQKVVSRDDELDLQNGVSTVSNSEDGYNSSME 830

Query: 870 -----RADSGGHMSWLRKCTSKIFSISPIKKSEHISTSMLEEEEPQSAVPT 915
                   S    SW+++CT+ IF  SP K      ++++   E +  VP+
Sbjct: 831 RQNGLTPSSATPFSWIKRCTNLIFKTSPEK------STLMHHYEEEGGVPS 875

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1255
3594730061213 PREDICTED: putative nuclear matrix const 0.941 0.973 0.547 0.0
1478157391234 hypothetical protein VITISV_038920 [Viti 0.944 0.960 0.544 0.0
2555668091172 ATP binding protein, putative [Ricinus c 0.920 0.985 0.518 0.0
2977378811122 unnamed protein product [Vitis vinifera] 0.882 0.986 0.513 0.0
2241016671008 predicted protein [Populus trichocarpa] 0.795 0.990 0.536 0.0
3565024951210 PREDICTED: putative nuclear matrix const 0.941 0.976 0.457 0.0
4494588071169 PREDICTED: putative nuclear matrix const 0.920 0.988 0.447 0.0
3565266071191 PREDICTED: putative nuclear matrix const 0.866 0.912 0.442 0.0
4495256321204 PREDICTED: LOW QUALITY PROTEIN: putative 0.917 0.955 0.419 0.0
3565266091190 PREDICTED: putative nuclear matrix const 0.865 0.912 0.440 0.0
>gi|359473006|ref|XP_002278531.2| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1137 bits (2942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 705/1287 (54%), Positives = 919/1287 (71%), Gaps = 106/1287 (8%)

Query: 1    MFTPQRRPIPATKLTPRGTEAQSSG--AISNARNI-KGKAVAFAETQSVPPPPPVNSLLD 57
            MFTPQR+      LTPR +EAQ SG  A+SN  N  KGK+VAF +     PPPP+ SL  
Sbjct: 1    MFTPQRKAWTGLSLTPR-SEAQKSGGGAVSNPVNGGKGKSVAFVDG----PPPPLGSL-- 53

Query: 58   YNSGSATVFPAESED--DWRRFREAGLLDEATMERKDREALMEKVSKLEKELYDYQYNMG 115
              SG A +   +  D  DWRR REAGLLDEA MERKDREAL+EKVSKL+ EL+DYQY+MG
Sbjct: 54   --SGKAMLTGIDGGDMEDWRRLREAGLLDEAAMERKDREALVEKVSKLQNELFDYQYSMG 111

Query: 116  LLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVA 175
            LLLIEKKEWTSK EEL Q+  E QEILKRE+SAH IA SE EKRE+NLR+AL +E+QCVA
Sbjct: 112  LLLIEKKEWTSKYEELSQALAEAQEILKREKSAHFIAISEVEKREENLRKALGVERQCVA 171

Query: 176  DLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRKSS 235
            +LEKAL ++  E +Q KL SE  L+DAN L+  IE +SLEVEEK  AA+AKLAE +RKSS
Sbjct: 172  ELEKALGEIHAEHSQIKLSSETKLSDANALVAKIEKRSLEVEEKLLAADAKLAEASRKSS 231

Query: 236  ELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRR 295
            ELE KLQE+E+RESV++RERLSL  EREAHEA F+KQ+EDLREWE+KLQ G+ERL E RR
Sbjct: 232  ELERKLQEVEARESVLRRERLSLNAEREAHEATFHKQKEDLREWERKLQEGEERLCEGRR 291

Query: 296  TLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKERVGFL 355
             +NQRE KANE +R LK KER+LEE +KKIDL S  +K +ED+IN+RLAEL VKE+    
Sbjct: 292  IINQREEKANEIDRTLKLKERNLEEAQKKIDLDSLNVKVKEDDINNRLAELTVKEK---- 347

Query: 356  AYLIYLLYFICAYSLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEI 415
                                         +A+ +R  +E+KEK L+ ++EKL+ARERVEI
Sbjct: 348  -----------------------------QAESMRGILEVKEKELIVLQEKLSARERVEI 378

Query: 416  QKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQA 475
            QKLLD+ RAILD K+QEFELE+E+KR S++EE+RSK+  ++Q+E E+ HREEKL +REQA
Sbjct: 379  QKLLDEHRAILDTKKQEFELEMEQKRNSVDEELRSKVHEVEQKEVEVLHREEKLGKREQA 438

Query: 476  LDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQI 535
            L+K+ +RVKEKE +L A+LK++KE+EK +KAEEK++E EK++++ADKESL +LK E+++I
Sbjct: 439  LEKRLERVKEKEKELEAKLKTLKEKEKSLKAEEKRVEGEKKQMLADKESLHLLKDELEKI 498

Query: 536  ESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDR 595
             ++  +QELQI EE ++LK+ EEE+SE  RLQ +LKQ+I+  RHQ+E+L KE EDL+Q+R
Sbjct: 499  RADITEQELQIHEETERLKVTEEERSEHHRLQLELKQEIDKCRHQEEMLQKEREDLKQER 558

Query: 596  EKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAI 655
              FEK+WE LDEKR  I KE  +I DEK+KLEKL  S EERLKKE+ AM +++QRE+EA+
Sbjct: 559  IMFEKDWEALDEKRAVITKEMREIGDEKEKLEKLHLSEEERLKKEKLAMEEHIQRELEAV 618

Query: 656  RLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTR 715
            R++KE+F A M+HEQL          RK   E EMQ         NR+D+++K LQER R
Sbjct: 619  RIEKESFAAIMKHEQL----------RKRDLEIEMQ---------NRQDEIQKRLQERER 659

Query: 716  TFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDID 775
             FEE+RER LN+I HLKEVA  EI+E+K+ER ++EKEK EV +N+ +L+  QL MRKDID
Sbjct: 660  AFEEERERELNNINHLKEVARREIEEMKTERRRIEKEKQEVLLNKRQLEGHQLEMRKDID 719

Query: 776  ELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIP 835
            EL IL R+L   REQF +E++RFL FV+KH +CKNCGE+ R FV+++LQLP+ E     P
Sbjct: 720  ELGILSRKLKDQREQFIKERDRFLTFVDKHKTCKNCGEITREFVLNDLQLPEMEVEA-FP 778

Query: 836  LPQVAERCLGNRQGDVAAPYDSNISNSHGGMNLGRADSGGHMSWLRKCTSKIFSISPIKK 895
            LP +A+  L + QG++AA   +N+  S G ++L  + SGG MS+LRKC +KIF++SP KK
Sbjct: 779  LPNLADEFLNSPQGNMAASDGTNVKISTGEIDLVSSGSGGRMSFLRKCATKIFNLSPSKK 838

Query: 896  SEHISTSMLEEEEPQSAVPTIMQEKAEGPGVLVSKEAIGYSIPEDEPQSSFRLVNDSTN- 954
            SEH+   +L EE P   +   + EKAEGP +      +G SI EDE + SF + NDS + 
Sbjct: 839  SEHVGVQVLREESPLLDLQVNL-EKAEGPSI------VGQSIAEDELEPSFGIANDSFDI 891

Query: 955  ---------REMDDEYAPSVDGHSYMDSKVEDVAEDSQQSELRSGKRRPGRKRKSGVNRT 1005
                     RE+D  +A SVDG S M SK ++  EDSQQSEL+SG+R+PGRKR++GV+RT
Sbjct: 892  QQLHSDSVMREVDGGHAQSVDGVSNMGSKEQEGPEDSQQSELKSGRRKPGRKRRTGVHRT 951

Query: 1006 RSVKAAVEDAKLFLGESPEGAGLNA------SFQAHEDSQGISSHTQE-ASNMAKKRRRP 1058
            RSVK  VEDAK FLGE+PE   LN       S   +E+ +  +SH ++ AS + +KR+R 
Sbjct: 952  RSVKNVVEDAKAFLGETPEIPELNGDERPNDSTYTNEEGERETSHAEKAASTITRKRQRA 1011

Query: 1059 QTSKTTQSEKDGADSEGYSDSVTAGGGRRKRHQTVATVSQTPGERRYNLRRHKTSSAVLA 1118
             +S+ T+SE+D ADSEG SDSVTA GGR KR QTVA V QTPGE+RYNLRRHKT+  V  
Sbjct: 1012 PSSRITESEQDAADSEGRSDSVTA-GGRGKRRQTVAPVVQTPGEKRYNLRRHKTAGTVAT 1070

Query: 1119 LEASADLSKANK--TVAEVTNPVEVVSNPKSASTFPPAVLNENGKSTHLVQVTSVKSMEL 1176
             +ASA+L K ++        N ++  +NPK+AS+ P    ++N K+T LV VT++KS+E+
Sbjct: 1071 AQASANLPKRDEKGGDGGDDNTLQTKANPKAASS-PSLADSDNPKTTPLVHVTTLKSVEI 1129

Query: 1177 ---SRDRAVRFKSTTNIVDENADAPKSIENTVLSEEVNG----TSEYVDEDENGGRV-LE 1228
               S DR VRFK T +IV  N D+ +  EN  L +E+ G    T  Y  EDENG     E
Sbjct: 1130 REYSPDRVVRFK-TVDIVGGNNDSARLAENMELRQEIPGNPGDTPGY--EDENGSMSHEE 1186

Query: 1229 DEEDDDDDSDHPGEASIGKKLWNFFTS 1255
            D+  D+D+S+HPG+ASIGKKLWNFFT+
Sbjct: 1187 DDNSDEDESEHPGDASIGKKLWNFFTT 1213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147815739|emb|CAN74873.1| hypothetical protein VITISV_038920 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255566809|ref|XP_002524388.1| ATP binding protein, putative [Ricinus communis] gi|223536349|gb|EEF37999.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297737881|emb|CBI27082.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224101667|ref|XP_002312375.1| predicted protein [Populus trichocarpa] gi|222852195|gb|EEE89742.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356502495|ref|XP_003520054.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|449458807|ref|XP_004147138.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356526607|ref|XP_003531908.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|449525632|ref|XP_004169820.1| PREDICTED: LOW QUALITY PROTEIN: putative nuclear matrix constituent protein 1-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356526609|ref|XP_003531909.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like isoform 2 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1255
TAIR|locus:20318751128 LINC2 "LITTLE NUCLEI2" [Arabid 0.636 0.708 0.345 2.5e-119
TAIR|locus:20124231085 LINC3 "LITTLE NUCLEI3" [Arabid 0.498 0.576 0.352 1e-115
TAIR|locus:20195291132 LINC1 "AT1G67230" [Arabidopsis 0.779 0.863 0.293 1.1e-110
TAIR|locus:21699501042 LINC4 "LITTLE NUCLEI4" [Arabid 0.757 0.912 0.256 1.6e-86
ZFIN|ZDB-GENE-050208-3171422 tnks1bp1 "tankyrase 1 binding 0.467 0.412 0.230 5.7e-23
ZFIN|ZDB-GENE-030616-5831376 acin1a "apoptotic chromatin co 0.447 0.408 0.244 3.6e-21
DICTYBASE|DDB_G02880691082 DDB_G0288069 [Dictyostelium di 0.452 0.524 0.223 1.2e-21
UNIPROTKB|Q07283 1943 TCHH "Trichohyalin" [Homo sapi 0.286 0.184 0.229 2.5e-15
GENEDB_PFALCIPARUM|PF11_04862055 PF11_0486 "MAEBL, putative" [P 0.533 0.325 0.218 2.4e-21
UNIPROTKB|Q8IHP32055 PF11_0486 "MAEBL, putative" [P 0.533 0.325 0.218 2.4e-21
TAIR|locus:2031875 LINC2 "LITTLE NUCLEI2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1054 (376.1 bits), Expect = 2.5e-119, Sum P(2) = 2.5e-119
 Identities = 291/843 (34%), Positives = 440/843 (52%)

Query:   137 ETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQCVADLEKALRDMGEERAQTKLFSE 196
             E +E++ + +  +  AF EA+   + L+R  S     +  +E+      EE  +  L  E
Sbjct:   109 ENKELVSKHEQLNQ-AFQEAQ---EILKREQSSHLYALTTVEQR-----EENLRKALGLE 159

Query:   197 KT-LTDANTLLGGIEGKSLEV----EEKFHAAEAKLAEVNRKSSELEMKLQELESR--ES 249
             K  + +    L  I+ ++ ++    E K   A A +A VN +SS++E K+   ES+  E+
Sbjct:   160 KQCVQELEKALREIQEENSKIRLSSEAKLVEANALVASVNGRSSDVENKIYSAESKLAEA 219

Query:   250 VIKRERLSL-VTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENE 308
               K   L L + E E  E+    Q+E L  + K+ +  +    + R  LN+ E K    E
Sbjct:   220 TRKSSELKLRLKEVETRESVL--QQERL-SFTKERESYEGTFQKQREYLNEWEKKLQGKE 276

Query:   309 RILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKERVGXXXXXXXXXXXXXXX 368
               + +++R+L + E+K++    KLK +E E+           +V                
Sbjct:   277 ESITEQKRNLNQREEKVNEIEKKLKLKEKELEEW------NRKVDLSMSKSKETEEDITK 330

Query:   369 SLPSFSYNVLLNFFFQEADCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDA 428
              L   +         +EA  L+ T+  KE  L   EEKL ARE  EIQKL+DDQ+ +L +
Sbjct:   331 RLEELTTKE------KEAHTLQITLLAKENELRAFEEKLIAREGTEIQKLIDDQKEVLGS 384

Query:   429 XXXXXXXXXXXXXXXXXXXXXXKISALDQQEFEISHREEKLERREQALDKKSDRVKEKEN 488
                                   KI  L++Q+ EI H EEKLE+R QA++KK DRV EKE 
Sbjct:   385 KMLEFELECEEIRKSLDKELQRKIEELERQKVEIDHSEEKLEKRNQAMNKKFDRVNEKEM 444

Query:   489 DLAARLKSVKERXXXXXXXXXXXXXXXXXXIADKESLQILKVEIDQIESENAQQELQIQE 548
             DL A+LK++KER                  ++DKESL+ L+ EI++I +E  ++E  I+E
Sbjct:   445 DLEAKLKTIKEREKIIQAEEKRLSLEKQQLLSDKESLEDLQQEIEKIRAEMTKKEEMIEE 504

Query:   549 ECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEK 608
             EC+ L+I +EE+ E LRLQS+LK QIE  R  +E L KE E+L+Q++E+FEKEWE+LDEK
Sbjct:   505 ECKSLEIKKEEREEYLRLQSELKSQIEKSRVHEEFLSKEVENLKQEKERFEKEWEILDEK 564

Query:   609 RDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRH 668
             +   NKE+ +I++EK+K E+ Q    ERLKKEE A+R  + +E++ IRL +E+FEA M H
Sbjct:   565 QAVYNKERIRISEEKEKFERFQLLEGERLKKEESALRVQIMQELDDIRLQRESFEANMEH 624

Query:   669 EQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQXXXXXXXXXXXXVLNDI 728
             E+  L EK K ++ K++++ EM R N E EL  R+++ EK+L              L+DI
Sbjct:   625 ERSALQEKVKLEQSKVIDDLEMMRRNLEIELQERKEQDEKDLLDRMAQFEDKRMAELSDI 684

Query:   729 AHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDR 788
              H K+    E++E+ S+R  L+KE  E+  +++KL+EQQ+ M  DI EL  L   L   R
Sbjct:   685 NHQKQALNREMEEMMSKRSALQKESEEIAKHKDKLKEQQVEMHNDISELSTLSINLKKRR 744

Query:   789 EQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLP-DDEARNDIPLPQVAERCLGNR 847
             E F RE+ RFL FV+K   C +CG+++  FV+S+LQLP +DE      LP +    L + 
Sbjct:   745 EVFGRERSRFLAFVQKLKDCGSCGQLVNDFVLSDLQLPSNDEVAI---LPPIG--VLNDL 799

Query:   848 QGDVAAPYDSNISNSHGGMNLGRADSGG-HMSWLRKCTXXXXXXXXXXXXEH-ISTSMLE 905
              G   A    NI  S  G   G   S    MS L+KCT            EH I T    
Sbjct:   800 PGSSNASDSCNIKKSLDGDASGSGGSRRPSMSILQKCTSIIFSPSKRV--EHGIDTGK-P 856

Query:   906 EEEPQSAVPTIMQEKAEGP-GVLVSKEAIGYSIPEDEPQSSFRLVNDSTNREMDDEYAPS 964
             E+   S+V   M+ K E P  V +       SIPE++ + +   V +++      E+  S
Sbjct:   857 EQRLSSSVAVGMETKGEKPLPVDLRLRPSSSSIPEEDEEYTDSRVQETSEGSQLSEFQSS 916

Query:   965 VDG 967
               G
Sbjct:   917 RRG 919
GO:0005634 "nucleus" evidence=ISM
GO:0005654 "nucleoplasm" evidence=IDA
GO:0006997 "nucleus organization" evidence=IGI
GO:0006342 "chromatin silencing" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0010050 "vegetative phase change" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0016572 "histone phosphorylation" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
TAIR|locus:2012423 LINC3 "LITTLE NUCLEI3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019529 LINC1 "AT1G67230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169950 LINC4 "LITTLE NUCLEI4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030616-583 acin1a "apoptotic chromatin condensation inducer 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288069 DDB_G0288069 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q07283 TCHH "Trichohyalin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF11_0486 PF11_0486 "MAEBL, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IHP3 PF11_0486 "MAEBL, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1255
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 8e-17
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-16
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-16
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 8e-15
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 1e-14
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-14
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 8e-14
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 1e-13
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-13
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 2e-13
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-13
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 9e-13
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-12
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-12
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-12
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-12
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-11
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-11
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 1e-11
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-11
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-11
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-10
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-10
TIGR006061311 TIGR00606, rad50, rad50 9e-10
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-09
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-09
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-09
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-09
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-09
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-09
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 5e-09
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-08
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 1e-08
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 1e-08
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 1e-08
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 1e-08
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-08
pfam121281198 pfam12128, DUF3584, Protein of unknown function (D 2e-08
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-08
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-08
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 3e-08
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 4e-08
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 4e-08
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 4e-08
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-08
TIGR03319514 TIGR03319, RNase_Y, ribonuclease Y 7e-08
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 8e-08
pfam121281198 pfam12128, DUF3584, Protein of unknown function (D 9e-08
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-07
COG50221463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 2e-07
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-07
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-07
pfam07888546 pfam07888, CALCOCO1, Calcium binding and coiled-co 4e-07
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 8e-07
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 1e-06
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 1e-06
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 1e-06
PRK00106535 PRK00106, PRK00106, hypothetical protein; Provisio 2e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-06
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 3e-06
COG0610962 COG0610, COG0610, Type I site-specific restriction 5e-06
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 7e-06
TIGR006181042 TIGR00618, sbcc, exonuclease SbcC 7e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 9e-06
TIGR006181042 TIGR00618, sbcc, exonuclease SbcC 1e-05
pfam13166713 pfam13166, AAA_13, AAA domain 1e-05
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-05
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 2e-05
PRK05771646 PRK05771, PRK05771, V-type ATP synthase subunit I; 2e-05
COG4372499 COG4372, COG4372, Uncharacterized protein conserve 2e-05
TIGR006181042 TIGR00618, sbcc, exonuclease SbcC 3e-05
PRK05771646 PRK05771, PRK05771, V-type ATP synthase subunit I; 3e-05
PRK00409782 PRK00409, PRK00409, recombination and DNA strand e 3e-05
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 4e-05
pfam12128 1198 pfam12128, DUF3584, Protein of unknown function (D 5e-05
COG1269660 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su 6e-05
COG2268548 COG2268, COG2268, Uncharacterized protein conserve 6e-05
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 7e-05
TIGR03185650 TIGR03185, DNA_S_dndD, DNA sulfur modification pro 7e-05
pfam01496707 pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni 8e-05
PRK01156895 PRK01156, PRK01156, chromosome segregation protein 9e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-04
TIGR00606 1311 TIGR00606, rad50, rad50 1e-04
TIGR006061311 TIGR00606, rad50, rad50 1e-04
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 1e-04
PRK12705508 PRK12705, PRK12705, hypothetical protein; Provisio 1e-04
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 2e-04
pfam13166713 pfam13166, AAA_13, AAA domain 2e-04
PRK05771646 PRK05771, PRK05771, V-type ATP synthase subunit I; 2e-04
PRK12705508 PRK12705, PRK12705, hypothetical protein; Provisio 2e-04
pfam12072201 pfam12072, DUF3552, Domain of unknown function (DU 2e-04
pfam06785401 pfam06785, UPF0242, Uncharacterized protein family 2e-04
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 2e-04
COG52714600 COG5271, MDN1, AAA ATPase containing von Willebran 2e-04
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-04
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 4e-04
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 4e-04
PLN02939977 PLN02939, PLN02939, transferase, transferring glyc 4e-04
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 5e-04
pfam05557722 pfam05557, MAD, Mitotic checkpoint protein 6e-04
COG5281833 COG5281, COG5281, Phage-related minor tail protein 7e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-04
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 8e-04
PTZ001081388 PTZ00108, PTZ00108, DNA topoisomerase 2-like prote 8e-04
pfam121281198 pfam12128, DUF3584, Protein of unknown function (D 0.001
pfam13166713 pfam13166, AAA_13, AAA domain 0.001
COG5185622 COG5185, HEC1, Protein involved in chromosome segr 0.001
TIGR006061311 TIGR00606, rad50, rad50 0.002
PRK12704520 PRK12704, PRK12704, phosphodiesterase; Provisional 0.002
TIGR03319514 TIGR03319, RNase_Y, ribonuclease Y 0.002
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 0.002
COG4372499 COG4372, COG4372, Uncharacterized protein conserve 0.002
COG1269660 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su 0.002
TIGR03185650 TIGR03185, DNA_S_dndD, DNA sulfur modification pro 0.002
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 0.002
COG1293564 COG1293, COG1293, Predicted RNA-binding protein ho 0.002
pfam04156186 pfam04156, IncA, IncA protein 0.002
PRK00409782 PRK00409, PRK00409, recombination and DNA strand e 0.003
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 0.003
pfam05557722 pfam05557, MAD, Mitotic checkpoint protein 0.003
pfam04156186 pfam04156, IncA, IncA protein 0.003
COG4372499 COG4372, COG4372, Uncharacterized protein conserve 0.004
PRK01156895 PRK01156, PRK01156, chromosome segregation protein 0.004
pfam05262489 pfam05262, Borrelia_P83, Borrelia P83/100 protein 0.004
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 0.004
COG1579239 COG1579, COG1579, Zn-ribbon protein, possibly nucl 0.004
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information 
 Score = 86.3 bits (214), Expect = 8e-17
 Identities = 98/403 (24%), Positives = 180/403 (44%), Gaps = 35/403 (8%)

Query: 396  KEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISAL 455
            + + +  +EEK+   E    +  L+   A L  + +E E ELE+ RK   EE+  +ISAL
Sbjct: 675  RRREIEELEEKIEELEEKIAE--LEKALAELRKELEELEEELEQLRK-ELEELSRQISAL 731

Query: 456  DQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEK 515
             +    +    E+LE R   L K+   ++ +  +L  RL+  +  E+  +AE +  ELE 
Sbjct: 732  RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE--EAEEELAEAEAEIEELE- 788

Query: 516  QKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIE 575
             ++   KE L+ L+  +D++ +E      +     ++L+  E   +   R    L++QIE
Sbjct: 789  AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848

Query: 576  TYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEE 635
                  E L  E E+L++  E+ E E E L  +R  + +    +  E ++L +     E 
Sbjct: 849  ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908

Query: 636  RLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQ 695
            +  +      + ++ ++  + L  E  E  + + Q  LSE+        LEE E      
Sbjct: 909  KRSELR-RELEELREKLAQLELRLEGLEVRIDNLQERLSEEY----SLTLEEAE------ 957

Query: 696  EAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHE 755
               L N+ +  E+E + R +  E K    + ++  +   A  E +E+K   D L  +K +
Sbjct: 958  --ALENKIEDDEEEARRRLKRLENK----IKELGPVNLAAIEEYEELKERYDFLTAQKED 1011

Query: 756  VKVNREKLQEQQLGMRKDIDELDILCRRLYGD-----REQFKR 793
            +   +E L+E        I+E+D   R  + D      E F+R
Sbjct: 1012 LTEAKETLEEA-------IEEIDREARERFKDTFDQVNENFQR 1047

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|129694 TIGR00606, rad50, rad50 Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC Back     alignment and domain information
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD Back     alignment and domain information
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family Back     alignment and domain information
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|129694 TIGR00606, rad50, rad50 Back     alignment and domain information
>gnl|CDD|129694 TIGR00606, rad50, rad50 Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552) Back     alignment and domain information
>gnl|CDD|219176 pfam06785, UPF0242, Uncharacterized protein family (UPF0242) Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein Back     alignment and domain information
>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function unknown] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain Back     alignment and domain information
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|129694 TIGR00606, rad50, rad50 Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription] Back     alignment and domain information
>gnl|CDD|217933 pfam04156, IncA, IncA protein Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein Back     alignment and domain information
>gnl|CDD|217933 pfam04156, IncA, IncA protein Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1255
PRK02224880 chromosome segregation protein; Provisional 99.49
PRK02224880 chromosome segregation protein; Provisional 99.45
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 99.41
TIGR006061311 rad50 rad50. This family is based on the phylogeno 99.32
TIGR006061311 rad50 rad50. This family is based on the phylogeno 99.3
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 99.11
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 99.08
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 99.07
PRK01156895 chromosome segregation protein; Provisional 99.05
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 99.03
PRK03918880 chromosome segregation protein; Provisional 99.01
PRK03918880 chromosome segregation protein; Provisional 98.95
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 98.93
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 98.92
COG11961163 Smc Chromosome segregation ATPases [Cell division 98.85
PRK01156895 chromosome segregation protein; Provisional 98.84
KOG46741822 consensus Uncharacterized conserved coiled-coil pr 98.48
COG11961163 Smc Chromosome segregation ATPases [Cell division 98.39
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 98.36
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 98.33
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 98.0
PF10174775 Cast: RIM-binding protein of the cytomatrix active 97.98
KOG09961293 consensus Structural maintenance of chromosome pro 97.9
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 97.86
PF10174775 Cast: RIM-binding protein of the cytomatrix active 97.81
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 97.79
KOG10291118 consensus Endocytic adaptor protein intersectin [S 97.75
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 97.73
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 97.55
PRK04863 1486 mukB cell division protein MukB; Provisional 97.53
KOG46741822 consensus Uncharacterized conserved coiled-coil pr 97.43
PRK11637428 AmiB activator; Provisional 97.37
KOG0018 1141 consensus Structural maintenance of chromosome pro 97.24
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 97.13
PRK12704520 phosphodiesterase; Provisional 97.09
PF00038312 Filament: Intermediate filament protein; InterPro: 96.91
KOG10291118 consensus Endocytic adaptor protein intersectin [S 96.85
PF12072201 DUF3552: Domain of unknown function (DUF3552); Int 96.85
KOG0964 1200 consensus Structural maintenance of chromosome pro 96.84
PRK00106535 hypothetical protein; Provisional 96.76
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 96.74
PRK11637428 AmiB activator; Provisional 96.59
PHA02562562 46 endonuclease subunit; Provisional 96.59
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 96.58
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.57
KOG09331174 consensus Structural maintenance of chromosome pro 96.57
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 96.55
KOG06121317 consensus Rho-associated, coiled-coil containing p 96.48
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 96.27
PRK00106535 hypothetical protein; Provisional 96.2
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 96.01
PRK12704520 phosphodiesterase; Provisional 95.97
KOG00181141 consensus Structural maintenance of chromosome pro 95.89
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 95.61
PRK04863 1486 mukB cell division protein MukB; Provisional 95.59
PHA02562562 46 endonuclease subunit; Provisional 95.49
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.39
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 95.15
PF13851201 GAS: Growth-arrest specific micro-tubule binding 94.66
PRK09039343 hypothetical protein; Validated 94.57
KOG09641200 consensus Structural maintenance of chromosome pro 94.55
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 94.55
PRK12705508 hypothetical protein; Provisional 94.52
PF00038312 Filament: Intermediate filament protein; InterPro: 94.45
COG4942420 Membrane-bound metallopeptidase [Cell division and 94.04
KOG46431195 consensus Uncharacterized coiled-coil protein [Fun 93.92
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 93.53
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 93.14
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 93.02
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 92.73
PF09731582 Mitofilin: Mitochondrial inner membrane protein; I 92.44
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 92.35
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 92.2
KOG09621294 consensus DNA repair protein RAD50, ABC-type ATPas 90.76
PF05701522 WEMBL: Weak chloroplast movement under blue light; 90.21
PRK12705508 hypothetical protein; Provisional 89.98
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 89.84
PF12072201 DUF3552: Domain of unknown function (DUF3552); Int 89.64
PF05701522 WEMBL: Weak chloroplast movement under blue light; 89.49
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 89.25
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 88.92
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 88.48
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 88.47
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 87.95
PF05262489 Borrelia_P83: Borrelia P83/100 protein; InterPro: 87.07
KOG06121317 consensus Rho-associated, coiled-coil containing p 86.95
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 86.86
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 86.25
PRK09039343 hypothetical protein; Validated 85.83
PF13863126 DUF4200: Domain of unknown function (DUF4200) 85.74
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 85.34
PRK102461047 exonuclease subunit SbcC; Provisional 84.79
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 83.07
KOG05791187 consensus Ste20-like serine/threonine protein kina 82.84
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 81.54
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 80.03
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information 
Probab=99.49  E-value=2e-07  Score=113.86  Aligned_cols=54  Identities=24%  Similarity=0.430  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 000847          565 RLQSQLKQQIETYRHQQELLLK-----EHEDLQQDREKFEKEWEVLDEKRDEINKEQEK  618 (1255)
Q Consensus       565 ~LqseLKeEIe~~R~Qke~Llk-----Eae~Lk~ekekFE~EWE~LDEKR~el~KE~~~  618 (1255)
                      .+..+|+++|...|.+...|.+     ..+.|.....+.+..-+.+..+..++..+...
T Consensus       620 ~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~  678 (880)
T PRK02224        620 ELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDD  678 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344777777777777777743     23444444444444444444443333333333

>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF13863 DUF4200: Domain of unknown function (DUF4200) Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK10246 exonuclease subunit SbcC; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1255
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-22
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-21
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-18
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-18
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-18
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-15
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-14
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-12
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-15
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-14
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-13
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 9e-11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 8e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 1e-09
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 4e-08
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 8e-08
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-06
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 3e-04
1sjj_A863 Actinin; 3-helix bundle, calponin homology domain, 2e-08
1sjj_A863 Actinin; 3-helix bundle, calponin homology domain, 1e-06
1sjj_A863 Actinin; 3-helix bundle, calponin homology domain, 8e-05
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 8e-07
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 1e-06
2zuo_A861 MVP, major vault protein; repeat domains, protein- 9e-07
2zuo_A861 MVP, major vault protein; repeat domains, protein- 1e-05
2zuo_A861 MVP, major vault protein; repeat domains, protein- 4e-05
2zuo_A861 MVP, major vault protein; repeat domains, protein- 3e-04
2zuo_A861 MVP, major vault protein; repeat domains, protein- 3e-04
2zuo_A861 MVP, major vault protein; repeat domains, protein- 4e-04
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 3e-06
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 3e-06
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 2e-05
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 3e-05
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 1e-04
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 4e-04
2xs1_A704 Programmed cell death 6-interacting protein; prote 3e-06
2xs1_A704 Programmed cell death 6-interacting protein; prote 2e-05
2xs1_A704 Programmed cell death 6-interacting protein; prote 3e-05
2i1j_A575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 1e-05
1w1w_A430 Structural maintenance of chromosome 1; cohesin, c 2e-05
2w00_A1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 3e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 4e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 5e-05
1yvl_A683 Signal transducer and activator of transcription 1 2e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 2e-04
2ve7_A315 Kinetochore protein HEC1, kinetochore protein SPC; 4e-04
1bg1_A596 Protein (transcription factor STAT3B); protein-DNA 9e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score =  104 bits (261), Expect = 1e-22
 Identities = 65/370 (17%), Positives = 141/370 (38%), Gaps = 19/370 (5%)

Query: 408  NARERVEIQKLLDDQRAILDAKQQEFEL-ELEEKRKSIEEEMRSKISALDQQEFEISHRE 466
                      L      +L   +QE E+   +E+ +  +E  +   + L + E + +   
Sbjct: 832  MNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLC 891

Query: 467  EKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQ 526
            E+    ++ L  +++   E E          +E E+ +   E ++E E+       E  Q
Sbjct: 892  EEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEE-------ERSQ 944

Query: 527  ILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLK 586
             L+ E  +++ +    E Q++EE    +  + EK            +I+       ++  
Sbjct: 945  QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV-------TADGKIKKMEDDILIMED 997

Query: 587  EHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRD 646
            ++  L ++R+  E+    L     E  ++ + +   K K E +    E RLKKEE + ++
Sbjct: 998  QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1057

Query: 647  YVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKM 706
              + + +      +  E     +  +   KA+  +++   +  + R+  E    N   K 
Sbjct: 1058 LEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117

Query: 707  EKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQ 766
             +EL+      +E  E            AE + +++  E + L+ E  +        QE 
Sbjct: 1118 IRELESHISDLQEDLESEKAARNK----AEKQKRDLSEELEALKTELEDTLDTTATQQEL 1173

Query: 767  QLGMRKDIDE 776
            +    KD D+
Sbjct: 1174 RGSDYKDDDD 1183
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 Back     alignment and structure
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 Back     alignment and structure
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 Back     alignment and structure
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430 Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Length = 1038 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} Length = 683 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C* Length = 315 Back     alignment and structure
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A Length = 596 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00