Citrus Sinensis ID: 000849

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250----
MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYGRKSGYFQSEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMSAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFFLGKPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEAGEE
ccHHHHHHHHHHHHccccEEEEEccccccccccccEEEEEccccccccccccEEEccHHHHHHHHcccccccccccEEEEEEEccccHHHHHHHHcccccEEEccHHHHHHHHHHHHHHcccccHHHHHHHHHHccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccccccccEEEEEEEEcccccccccccccEEEEEEEEccccccEEEEEEEEEEEccccccccEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEccHHHHHHHHHHHHHHHHccccccEEEEEcccccccHHHcccccEEEEcHHHHHHHHHcccccccccEEEEEEEEcEEEcccccccHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHcccccccccccccccccccEEEEEEEcccccHHHHHHHcHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHHHccccHHHHHcccccccccccccccHHHHHHHHHccEEEEEccccHHHHHHHHHHHHccccEEEEEccccccccccccEEEEEEEEEcHHHHHHHcccccccccccccEEEEEccccHHHHHHHHHcccccEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEcccccEEccHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccccHHHHHcccHHHHHHHHcccHHHHHHHHHHHcccccEEEEEEEEcccccccccccEEEEEEEEEEcccccccccEEcccccccccccEEEEEEEccccEEEEEEEEEcccccEEEEEEEEEcccccEEEEEEEEEcccccccEEEEEEEEEEccccc
ccHHHHHHHHHHHHcccEEEEEEEHHHHcccccccEEEEEEccEEEcccccccEEccHHHHHHHHHcccccccccccEEEEEEcHHHHHHHHHHHHccccHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHcccccccccHHHccHHHHHHHHHHHHHHHHHHHHcccEEEEcccccEcHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccHHHHHcHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccHHccccccHHHHHHHHHcccccccccccEEEEEEEEEcccccEcccccccccEEEEEEEcccccEEEEEHEEEEEHccccccEEEEEEEEcccccccccccccccccccccccccccccHHHcccHHHHHHHcccccccHHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHcccEEEEccccccEEEccccccHHHHEEEEEEEEHHHEccccccHHHHHHHHHHHHHHHHccccEEEEEEccccHcHHHHHHHHcccccccEEccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccHHHHHHHHcccEEEcccccHHHHHHHHHHHHcccEEEEEEEcHEEcccccccEEEEEEccccHHHHHHHHHcccccccccccEEEEEEcHHHHHHHHHHHHccccHHHHHHHHHHHHccHEEEEcccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEcccccEccccHHHHHHEEEEEHHHHHHHHHHccccccHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHccccccHHHHHHHHHcccccHHcHHHHcccccHHHHHHHcccHHHHHHHHHHHHHcccEEEEEEEEccccccccccEEEEEEEEEEccccccccccEEcccccccccccEEEEEEcccccEEEEEEEEEEEEEEEEEEEEEcccccccccEEEEEEEccHcccccEEEEEEEEEccccc
mkrgdrqlVEDLFCDGHVQVLVSTanlawgvnlpahtviikgtqvynpekgawtelsPLDIMQMLgragrpqydsygegiiITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLrnpvlyglspevldiTLGERITDLIHTAANvldrnnlvkygrksgyfqSEKIKMELAKLldrvpipvkesleepsAKINVLLQTYISQLKLeglsltsdmsagRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSvqtplrqfngipnEILMKLEkkdfflgkpitrTVLRVELtitpdfqwddkvhGYVELFWVIVedndgdyilHHEYFLLKKqyteedhslnftvpiyeplppqhlilpekfppptelldlqllpvtalqnpsyeALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLqlaptgsgktICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELhliggqggpVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEwigasshgvfnfppgvrpvpleiqiqgVDITNFEARMKAMTKPTYTAIMQHAknekpalvfvpsrkyaRLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGylheglnksdQEVVSTLFEAGKIKVCVMsssmcwevpltahlaTGRKMLILTTLLQMMghagrplldnsekcvilchaphkeYYKKFLyeafpveshlhhflhdnFNAEIVAGVIENKQDAVDYLTWTFrltqnpnyynlqgvshrhLSDHLSELVENTISDLEATRSIImeddmdlcpsnygmiASYYYISYKTIecfsssltskTKMKGLLEVLASASeyaqlpirpgEEELVRRLINHqrfsfanpkctdphVKANALLQAHFSARhmegnlkldqEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMwehdsmllqlpHFTKDLAKRcqenpgrsieTVFDLLEMEDDERRELLQMSDVQLLDIARFCnrfpnidmsykvqdsenvraggedttLQVVLERdlggrtelgpvysnrypkakeegWWLVVDDAKTNQLLAIKRVSLQRKsrakldfaapveggkktytldfmcdsymgcdqeysfTVDVKEAGEE
MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTaanvldrnnlvkygrksgyfqseKIKMELAKLLDRVPIPVkesleepsakINVLLQTYISQLKLEGLSLTSDMSAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMwsvqtplrqfngipNEILMKLEKKDFFLGKPITRTVLRVELTitpdfqwddkvHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMsykvqdsenvraggedttlqvvlerdlggrtelgpvysnrypkakeeGWWLVVDDAKTNQLLAIKrvslqrksrakldfaapveggkktYTLDFMCDSYMGCDQEYSFTVDVKEAGEE
MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYGRKSGYFQSEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMSAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFFLGKPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFdllemedderrellQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEAGEE
*******LVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDI*****************GIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYGRKSGYFQSEKIKMELAKLLDRVPIPVKESL**PSAKINVLLQTYISQLKLEGLSLTSDMSAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFFLGKPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEM*****RELLQMSDVQLLDIARFCNRFPNIDMSYKVQD***VRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVD*******
****DRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYGRKSGYFQSEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMSAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFFLGKPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLP***LILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEV***V*IIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTV*VK*****
MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYGRKSGYFQSEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMSAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFFLGKPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEAGEE
*K*GDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYGRKSGYFQSEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMSAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFFLGKPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKE****
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNLVKYGRKSGYFQSEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMSAGRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFFLGKPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHLATGRKMLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEAGEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1254 2.2.26 [Sep-21-2011]
O756432136 U5 small nuclear ribonucl yes no 0.959 0.563 0.544 0.0
Q9VUV92142 Putative U5 small nuclear yes no 0.964 0.564 0.514 0.0
Q9U2G02145 Putative U5 small nuclear yes no 0.967 0.565 0.469 0.0
Q55CI82237 Activating signal cointeg yes no 0.961 0.539 0.445 0.0
Q9UT242176 Pre-mRNA-splicing factor yes no 0.960 0.553 0.429 0.0
F1NTD62211 Activating signal cointeg yes no 0.964 0.547 0.397 0.0
E1BNG32201 Activating signal cointeg no no 0.968 0.551 0.399 0.0
Q8N3C02202 Activating signal cointeg no no 0.968 0.551 0.392 0.0
E9PZJ82198 Activating signal cointeg no no 0.968 0.552 0.391 0.0
F1LPQ22197 Activating signal cointeg no no 0.967 0.552 0.387 0.0
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2 Back     alignment and function desciption
 Score = 1483 bits (3840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 757/1389 (54%), Positives = 950/1389 (68%), Gaps = 186/1389 (13%)

Query: 1    MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
            M R DR LVEDLF D H+QVLVSTA LAWGVNLPAHTVIIKGTQVY+PEKG WTEL  LD
Sbjct: 789  MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALD 848

Query: 61   IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
            I+QMLGRAGRPQYD+ GEGI+IT H ELQYYLSL+NQQLPIESQ VSKL ++LNAEIVLG
Sbjct: 849  ILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLG 908

Query: 121  TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
             VQNAK+A NW+ Y YLY RMLR+P LYG+S + L  D  L +R  DL+HTAA +LD+NN
Sbjct: 909  NVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNN 968

Query: 179  LVKYGRKSGYFQ------------------------------------------------ 190
            LVKY +K+G FQ                                                
Sbjct: 969  LVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNIT 1028

Query: 191  -SEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SA 244
              E+ K+EL KLL+RVPIPVKES+EEPSAKINVLLQ +ISQLKLEG +L +DM     SA
Sbjct: 1029 VREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSA 1088

Query: 245  GRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 304
            GRL RA+FEIVL RGW+QL +K L L KM+ KRMW    PLRQF  +P E++ K+EKK+F
Sbjct: 1089 GRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNF 1148

Query: 305  --------------------FLGK-------------------PITRTVLRVELTITPDF 325
                                 +GK                   PITR+ L+VELTITPDF
Sbjct: 1149 PFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDF 1208

Query: 326  QWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQ--- 382
            QWD+KVHG  E FW++VED D + ILHHEYFLLK +Y +++H + F VP++EPLPPQ   
Sbjct: 1209 QWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFI 1268

Query: 383  -------------------HLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQN-YKLF 422
                               HLILPEK+PPPTELLDLQ LPV+AL+N ++E+LYQ+ +  F
Sbjct: 1269 RVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFF 1328

Query: 423  NPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTI 482
            NPIQTQVF  +YN++DNV V A                              PTGSGKTI
Sbjct: 1329 NPIQTQVFNTVYNSDDNVFVGA------------------------------PTGSGKTI 1358

Query: 483  CAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD 542
            CAEFAILR   ++SE    R VYI P+EALA+Q Y DW  KF   L   VV LT ET+ D
Sbjct: 1359 CAEFAILRMLLQSSEG---RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTD 1415

Query: 543  LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMR 602
            LKLL KG IIISTPEKWD LSRRWKQRK VQ ++LF++DE+HLIGG+ GPVLEVI +RMR
Sbjct: 1416 LKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMR 1475

Query: 603  YIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNF 662
            YI+SQ+E  IRIVALS+SL+NAKD+  W+G S+   FNF P VRPVPLE+ IQG +I++ 
Sbjct: 1476 YISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHT 1535

Query: 663  EARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCS 722
            + R+ +M KP Y AI +H+  +KP +VFVPSRK  RLTA+D++  +C    Q+  FL C+
Sbjct: 1536 QTRLLSMAKPVYHAITKHSP-KKPVIVFVPSRKQTRLTAIDILT-TCAADIQRQRFLHCT 1593

Query: 723  AKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWE 782
             K++ P++  + +  L+ TL  GVGYLHEGL+  ++ +V  LF +G I+V V S S+CW 
Sbjct: 1594 EKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWG 1653

Query: 783  VPLTAHLATGRKMLILTT-----------------LLQMMGHAGRPLLDNSEKCVILCHA 825
            + + AHL     ++I+ T                 +LQM+GHA RPL D+  +CVI+C  
Sbjct: 1654 MNVAAHL-----VIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQG 1708

Query: 826  PHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNP 882
              K+++KKFLYE  PVESHL H +HD+FNAEIV   IENKQDAVDYLTWTF   R+TQNP
Sbjct: 1709 SKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNP 1768

Query: 883  NYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKT 942
            NYYNLQG+SHRHLSDHLSELVE T+SDLE ++ I +ED+MD+ P N GMIA+YYYI+Y T
Sbjct: 1769 NYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTT 1828

Query: 943  IECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPH 1002
            IE FS SL +KTK++GL+E++++A+EY  +PIR  E+ L+R+L         NPK  DPH
Sbjct: 1829 IELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPH 1888

Query: 1003 VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQM 1062
            VK N LLQAH S   +   L+ D E++L  A RL+QA VDV+SSNGWLS AL AME++QM
Sbjct: 1889 VKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQM 1948

Query: 1063 VTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLL 1122
            VTQ MW  DS L QLPHFT +  KRC +   + +E+VFD++EMED+ER  LLQ++D Q+ 
Sbjct: 1949 VTQAMWSKDSYLKQLPHFTSEHIKRCTD---KGVESVFDIMEMEDEERNALLQLTDSQIA 2005

Query: 1123 DIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKE 1182
            D+ARFCNR+PNI++SY+V D +++R+GG    L V LER+       GPV +  +P+ +E
Sbjct: 2006 DVARFCNRYPNIELSYEVVDKDSIRSGGPVVVL-VQLERE---EEVTGPVIAPLFPQKRE 2061

Query: 1183 EGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEY 1242
            EGWW+V+ DAK+N L++IKR++LQ+K++ KLDF AP  G    YTL FM D+YMGCDQEY
Sbjct: 2062 EGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGA-HNYTLYFMSDAYMGCDQEY 2120

Query: 1243 SFTVDVKEA 1251
             F+VDVKEA
Sbjct: 2121 KFSVDVKEA 2129
Putative RNA helicase involved in the second step of RNA splicing. May promote one or more conformational changes in the dynamic network of RNA-RNA interactions in the spliceosome. Appears to catalyze an ATP-dependent unwinding of U4/U6 RNA duplices.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4 Back     alignment and function description
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1 Back     alignment and function description
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1 Back     alignment and function description
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brr2 PE=1 SV=1 Back     alignment and function description
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus GN=ascc3 PE=3 SV=2 Back     alignment and function description
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus GN=ascc3 PE=3 SV=1 Back     alignment and function description
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens GN=ASCC3 PE=1 SV=3 Back     alignment and function description
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus GN=Ascc3 PE=2 SV=1 Back     alignment and function description
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus norvegicus GN=Ascc3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1254
255555253 1809 U520, putative [Ricinus communis] gi|223 0.972 0.674 0.742 0.0
225433894 2177 PREDICTED: U5 small nuclear ribonucleopr 0.972 0.559 0.744 0.0
147802492 2144 hypothetical protein VITISV_042645 [Viti 0.972 0.568 0.744 0.0
224136151 2157 predicted protein [Populus trichocarpa] 0.972 0.565 0.736 0.0
357451431 2223 U5 small nuclear ribonucleoprotein 200 k 0.971 0.547 0.716 0.0
356556951 2183 PREDICTED: U5 small nuclear ribonucleopr 0.972 0.558 0.726 0.0
449459768 2175 PREDICTED: U5 small nuclear ribonucleopr 0.972 0.560 0.726 0.0
356525813 2183 PREDICTED: U5 small nuclear ribonucleopr 0.972 0.558 0.726 0.0
449517355 2175 PREDICTED: LOW QUALITY PROTEIN: U5 small 0.972 0.560 0.726 0.0
297850522 2171 EMB1507 [Arabidopsis lyrata subsp. lyrat 0.972 0.561 0.703 0.0
>gi|255555253|ref|XP_002518663.1| U520, putative [Ricinus communis] gi|223542044|gb|EEF43588.1| U520, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 2056 bits (5328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1027/1384 (74%), Positives = 1120/1384 (80%), Gaps = 164/1384 (11%)

Query: 1    MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
            M R DRQLVEDLF DGHVQVLVSTA LAWGVNLPAHTVIIKGTQ+YNPEKGAWTELSPLD
Sbjct: 453  MTRADRQLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD 512

Query: 61   IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
            +MQMLGRAGRPQYDSYGEGIIITGH+ELQYYLSLMNQQLPIESQFVSKLA+ LNAEIVLG
Sbjct: 513  VMQMLGRAGRPQYDSYGEGIIITGHTELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLG 572

Query: 121  TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
            TVQNA+EACNW+ YTYLY RMLRNP LYGL+P+VL  DITL ER  DLIH++A +LD+NN
Sbjct: 573  TVQNAREACNWLGYTYLYIRMLRNPTLYGLAPDVLTRDITLEERRADLIHSSATILDKNN 632

Query: 179  LVKYGRKSGYFQ----------------------------------------SEKIK--- 195
            LVKY RKSGYFQ                                        SE+ K   
Sbjct: 633  LVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVT 692

Query: 196  ------MELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SA 244
                  MELAKLLDRVPIP+KESLEEPSAKINVLLQ YISQLKLEGLSLTSDM     SA
Sbjct: 693  VRQDEKMELAKLLDRVPIPIKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSA 752

Query: 245  GRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 304
            GRL RALFEIVLKRGW+QL EKAL L KM+ KRMWSVQTPLRQFNGIPNEILMKLEKKD 
Sbjct: 753  GRLLRALFEIVLKRGWAQLTEKALNLCKMINKRMWSVQTPLRQFNGIPNEILMKLEKKDL 812

Query: 305  F--------------------LGK-------------------PITRTVLRVELTITPDF 325
                                 +G+                   PITRTVLRVELTITPDF
Sbjct: 813  AWERYYDLSSQEIGELIRFPKMGRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDF 872

Query: 326  QWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQ--- 382
            QW+DKVHGYVE FWVIVEDNDG+YILHHEYF+LKKQY +EDH+LNFTVPIYEPLPPQ   
Sbjct: 873  QWEDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFI 932

Query: 383  -------------------HLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFN 423
                               HLILPEK+PPPTELLDLQ LPVTAL+NPSYEALYQ++K FN
Sbjct: 933  RVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFN 992

Query: 424  PIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTIC 483
            P+QTQVF VLYNT+DNVLVAA                              PTGSGKTIC
Sbjct: 993  PVQTQVFTVLYNTDDNVLVAA------------------------------PTGSGKTIC 1022

Query: 484  AEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDL 543
            AEFAILRNHQ+  ++ V RAVYIAP+EA+AK+RY DWERKFG+ LGM VVELT ETA DL
Sbjct: 1023 AEFAILRNHQKGPDS-VTRAVYIAPLEAIAKERYRDWERKFGRGLGMRVVELTGETATDL 1081

Query: 544  KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRY 603
            KLLEK QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP+LEVIV+RMRY
Sbjct: 1082 KLLEKSQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPILEVIVSRMRY 1141

Query: 604  IASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFE 663
            IASQ+ENKIRIVALS+SLANAKDLGEWIGA+SHG+FNFPPGVRPVPLEI IQGVDI NFE
Sbjct: 1142 IASQIENKIRIVALSSSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANFE 1201

Query: 664  ARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSA 723
            ARM+AMTKPTYTAI+QHAKN KPA+VFVP+RK+ RLTAVDLM YS  DS +K AF++ S 
Sbjct: 1202 ARMQAMTKPTYTAIVQHAKNGKPAIVFVPTRKHVRLTAVDLMTYSSADSGEKPAFMMRSI 1261

Query: 724  KEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEV 783
            +E+EP V  +Q+EMLR+TLR GVGYLHEGL+  DQEVVS LFEAG I+VCVMSSSMCW V
Sbjct: 1262 EELEPFVGRVQDEMLRSTLRQGVGYLHEGLSSLDQEVVSQLFEAGWIQVCVMSSSMCWGV 1321

Query: 784  PLTAHLAT--------GRKM----LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYY 831
            PL AHL          GR+       +T LLQMMGHA RPLLDNS KCVILCHAP KEYY
Sbjct: 1322 PLAAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYY 1381

Query: 832  KKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQ 888
            KKFLYEAFPVESHLHHFLHDNFNAE+VAGVIENKQDAVDYLTWTF   RLTQNPNYYNLQ
Sbjct: 1382 KKFLYEAFPVESHLHHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQ 1441

Query: 889  GVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSS 948
            GVSHRHLSDHLSELVENT+SDLEA++ + +E+DMDL P N GMIASYYYISY TIE FSS
Sbjct: 1442 GVSHRHLSDHLSELVENTLSDLEASKCVAIEEDMDLSPLNLGMIASYYYISYTTIERFSS 1501

Query: 949  SLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANAL 1008
            SLTSKT+MKGLLE+LASASEYAQLPIRPGEEE++RRLINHQRFSF NP+ +DPHVKAN L
Sbjct: 1502 SLTSKTRMKGLLEILASASEYAQLPIRPGEEEVLRRLINHQRFSFENPRYSDPHVKANVL 1561

Query: 1009 LQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMW 1068
            LQAHFS   + GNL LDQ +VLLS+SRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMW
Sbjct: 1562 LQAHFSRHSVGGNLALDQREVLLSSSRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMW 1621

Query: 1069 EHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFC 1128
            E DSMLLQLPHFTK+LAK+CQENPG+SIETVFDL+EMEDDERRELLQMS+ +LLD+ RFC
Sbjct: 1622 ERDSMLLQLPHFTKELAKKCQENPGKSIETVFDLVEMEDDERRELLQMSNSELLDVVRFC 1681

Query: 1129 NRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLV 1188
            NRFPNIDMSY+V D E+VR  G+D TLQV LERDL GRTE+GPV + RYPKAKEEGWWLV
Sbjct: 1682 NRFPNIDMSYEVMDGEDVRM-GDDITLQVTLERDLEGRTEVGPVDAARYPKAKEEGWWLV 1740

Query: 1189 VDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDV 1248
            V D K+NQLLAIKRVSLQRKS+ KL+FAAP E G+K+YTL FMCDSY+GCDQEYSF VDV
Sbjct: 1741 VGDTKSNQLLAIKRVSLQRKSKVKLEFAAPSETGRKSYTLYFMCDSYLGCDQEYSFNVDV 1800

Query: 1249 KEAG 1252
            KEAG
Sbjct: 1801 KEAG 1804

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225433894|ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera] Back     alignment and taxonomy information
>gi|147802492|emb|CAN75158.1| hypothetical protein VITISV_042645 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224136151|ref|XP_002322252.1| predicted protein [Populus trichocarpa] gi|222869248|gb|EEF06379.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357451431|ref|XP_003595992.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago truncatula] gi|355485040|gb|AES66243.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356556951|ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] Back     alignment and taxonomy information
>gi|449459768|ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356525813|ref|XP_003531516.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] Back     alignment and taxonomy information
>gi|449517355|ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297850522|ref|XP_002893142.1| EMB1507 [Arabidopsis lyrata subsp. lyrata] gi|297338984|gb|EFH69401.1| EMB1507 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1254
TAIR|locus:20373752171 emb1507 "embryo defective 1507 0.744 0.430 0.702 0.0
TAIR|locus:20599692172 AT2G42270 [Arabidopsis thalian 0.740 0.427 0.672 0.0
UNIPROTKB|O756432136 SNRNP200 "U5 small nuclear rib 0.732 0.430 0.520 0.0
UNIPROTKB|E1BH782136 LOC100850262 "Uncharacterized 0.732 0.430 0.518 0.0
UNIPROTKB|F1LNJ22139 Ascc3l1 "Protein Ascc3l1" [Rat 0.732 0.429 0.520 0.0
ZFIN|ZDB-GENE-081105-642134 si:ch211-251j10.5 "si:ch211-25 0.736 0.432 0.516 0.0
FB|FBgn02635992142 l(3)72Ab "lethal (3) 72Ab" [Dr 0.725 0.424 0.449 0.0
DICTYBASE|DDB_G02700422237 ascc3l "U5 small nuclear ribon 0.357 0.200 0.451 1.7e-309
ASPGD|ASPL00000512972208 AN10194 [Emericella nidulans ( 0.487 0.276 0.438 2.7e-271
POMBASE|SPAC9.03c2176 brr2 "U5 snRNP complex subunit 0.730 0.420 0.388 5.5e-271
TAIR|locus:2037375 emb1507 "embryo defective 1507" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3359 (1187.5 bits), Expect = 0., Sum P(3) = 0.
 Identities = 675/961 (70%), Positives = 766/961 (79%)

Query:   308 KPITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDH 367
             +PITRTVL VELT+TPDF WD+K+H YVE FW+IVEDNDG+ ILHHEYFLLKKQY +EDH
Sbjct:  1215 QPITRTVLNVELTVTPDFLWDEKIHKYVEPFWIIVEDNDGEKILHHEYFLLKKQYIDEDH 1274

Query:   368 SLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQT 427
             +L+FTVPI+EPLPPQ+ +   +      L    +LPV+       E      +L + +Q 
Sbjct:  1275 TLHFTVPIFEPLPPQYFV---RVVSDKWLGSETVLPVSFRHLILPEKYPPPTELLD-LQP 1330

Query:   428 QVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNII-LVLQLAPTGSGKTICAEF 486
                  L N    +L         F   P + ++   L N    VL  APTGSGKTICAEF
Sbjct:  1331 LPVTALRNPNYEILYQDFKH---FN--PVQTQVFTVLYNTNDNVLVAAPTGSGKTICAEF 1385

Query:   487 AILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMDLKLL 546
             AILRNH    +   MR VYIAP+EA+AK+++  WE KFGK LG+ VVELT ETA+DLKLL
Sbjct:  1386 AILRNHHEGPDA-TMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGETALDLKLL 1444

Query:   547 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIAS 606
             EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI+DELHLIGGQ GPVLEVIV+RMRYI+S
Sbjct:  1445 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQHGPVLEVIVSRMRYISS 1504

Query:   607 QVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARM 666
             QV NKIRIVALSTSLANAKDLGEWIGASSHG+FNFPPGVRPVPLEI IQGVDI++FEARM
Sbjct:  1505 QVINKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGVDISSFEARM 1564

Query:   667 KAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEV 726
             +AMTKPTYTAI+QHAKN+KPA+VFVP+RK+ RLTAVDLM YS  D+ Q   FLL   +E+
Sbjct:  1565 QAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPDFLLGKLEEL 1624

Query:   727 EPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLT 786
             +P V  I+EE L+ TL  G+GYLHEGL+  DQE+V+ LFEAG+I+VCVMSSS+CW  PLT
Sbjct:  1625 DPFVEQIREETLKETLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLT 1684

Query:   787 AHLAT--------GRKM----LILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKKF 834
             AHL          GR+       +  LLQMMG A RPLLDN+ KCVI CHAP KEYYKKF
Sbjct:  1685 AHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCHAPRKEYYKKF 1744

Query:   835 LYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVS 891
             LYEAFPVES L HFLHDNFNAE+VAGVIENKQDAVDYLTWTF   RL QNPNYYNLQGVS
Sbjct:  1745 LYEAFPVESQLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNLQGVS 1804

Query:   892 HRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLT 951
             HRHLSDHLSELVENT+SDLEA++ I +ED+M+L P N GMIASYYYISY TIE FSS L+
Sbjct:  1805 HRHLSDHLSELVENTLSDLEASKCIEVEDEMELSPLNLGMIASYYYISYTTIERFSSLLS 1864

Query:   952 SKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQA 1011
             SKTKMKGLLE+L SASEY  +PIRPGEE+ VRRLINHQRFSF NPKCTDPHVKANALLQA
Sbjct:  1865 SKTKMKGLLEILTSASEYDMIPIRPGEEDTVRRLINHQRFSFENPKCTDPHVKANALLQA 1924

Query:  1012 HFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHD 1071
             HFS +++ GNL +DQ  VLLSA+RLLQAMVDVISSNGWL+LALLAMEVSQMVTQGMWE D
Sbjct:  1925 HFSRQNIGGNLAMDQRDVLLSATRLLQAMVDVISSNGWLNLALLAMEVSQMVTQGMWERD 1984

Query:  1072 SMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLLDIARFCNRF 1131
             SMLLQLPHFTKDLAKRCQENPG++IETVF              +MSD QLLDIARFCNRF
Sbjct:  1985 SMLLQLPHFTKDLAKRCQENPGKNIETVFDLVEMEDEERQELLKMSDAQLLDIARFCNRF 2044

Query:  1132 PNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDD 1191
             PNID++Y++  SE V  G E  TLQV+LERD+ GRTE+GPV S RYPK KEEGWWLVV D
Sbjct:  2045 PNIDLTYEIVGSEEVNPGKE-VTLQVMLERDMEGRTEVGPVDSLRYPKTKEEGWWLVVGD 2103

Query:  1192 AKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEYSFTVDVKEA 1251
              KTNQLLAIKRVSLQRK + KLDF AP E G+K+YTL FMCDSY+GCDQEYSF+VDVK +
Sbjct:  2104 TKTNQLLAIKRVSLQRKVKVKLDFTAPSEPGEKSYTLYFMCDSYLGCDQEYSFSVDVKGS 2163

Query:  1252 G 1252
             G
Sbjct:  2164 G 2164
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
GO:0005730 "nucleolus" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006259 "DNA metabolic process" evidence=RCA
GO:0007126 "meiosis" evidence=RCA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0033044 "regulation of chromosome organization" evidence=RCA
TAIR|locus:2059969 AT2G42270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O75643 SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa helicase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BH78 LOC100850262 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LNJ2 Ascc3l1 "Protein Ascc3l1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081105-64 si:ch211-251j10.5 "si:ch211-251j10.5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0263599 l(3)72Ab "lethal (3) 72Ab" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270042 ascc3l "U5 small nuclear ribonucleoprotein 200 kDa helicase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000051297 AN10194 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAC9.03c brr2 "U5 snRNP complex subunit Brr2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.130.824
3rd Layer3.6.40.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1254
smart00611312 smart00611, SEC63, Domain of unknown function in S 1e-105
pfam02889309 pfam02889, Sec63, Sec63 Brl domain 1e-105
smart00973314 smart00973, Sec63, Sec63 Brl domain 7e-84
COG1204766 COG1204, COG1204, Superfamily II helicase [General 1e-73
COG1204766 COG1204, COG1204, Superfamily II helicase [General 9e-66
pfam02889309 pfam02889, Sec63, Sec63 Brl domain 3e-61
smart00611312 smart00611, SEC63, Domain of unknown function in S 3e-56
smart00973314 smart00973, Sec63, Sec63 Brl domain 3e-50
PRK02362737 PRK02362, PRK02362, ski2-like helicase; Provisiona 9e-31
PRK00254720 PRK00254, PRK00254, ski2-like helicase; Provisiona 1e-30
PRK01172674 PRK01172, PRK01172, ski2-like helicase; Provisiona 2e-30
pfam00270169 pfam00270, DEAD, DEAD/DEAH box helicase 3e-26
PRK00254720 PRK00254, PRK00254, ski2-like helicase; Provisiona 4e-19
COG1201814 COG1201, Lhr, Lhr-like helicases [General function 7e-17
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 9e-17
PRK02362737 PRK02362, PRK02362, ski2-like helicase; Provisiona 6e-16
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 1e-15
COG1202830 COG1202, COG1202, Superfamily II helicase, archaea 2e-15
PRK01172674 PRK01172, PRK01172, ski2-like helicase; Provisiona 2e-14
COG45811041 COG4581, COG4581, Superfamily II RNA helicase [DNA 3e-12
COG1205851 COG1205, COG1205, Distinct helicase family with a 6e-11
smart0049082 smart00490, HELICc, helicase superfamily c-termina 3e-10
COG1202830 COG1202, COG1202, Superfamily II helicase, archaea 1e-09
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 9e-09
COG45811041 COG4581, COG4581, Superfamily II RNA helicase [DNA 3e-08
TIGR04121803 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA 3e-07
PRK09751 1490 PRK09751, PRK09751, putative ATP-dependent helicas 1e-06
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 7e-06
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 6e-05
cd00268203 cd00268, DEADc, DEAD-box helicases 7e-05
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 4e-04
PRK13767876 PRK13767, PRK13767, ATP-dependent helicase; Provis 0.002
>gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins Back     alignment and domain information 
 Score =  334 bits (858), Expect = e-105
 Identities = 135/326 (41%), Positives = 184/326 (56%), Gaps = 21/326 (6%)

Query: 926  PSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRL 985
            P++ G IASYYYISY TI  F+  L  K   K LL +L+ +SE+ Q+P+R  E+ L+  L
Sbjct: 4    PTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEEL 63

Query: 986  INHQRFSFANPKCTDPHVKANALLQAHFSARHMEG-NLKLDQEKVLLSASRLLQAMVDVI 1044
                     NP   DPHVKAN LLQAH S   +    L+ D   VL +A RLLQAMVD+ 
Sbjct: 64   AEKLPIRLENPSLDDPHVKANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIA 123

Query: 1045 SSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLE 1104
               GWLS AL A+ +SQM+ Q +W  DS LLQLPH  +++ KR ++     + ++ DLLE
Sbjct: 124  LERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPEEILKRLEKKK---VLSLEDLLE 180

Query: 1105 MEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLG 1164
            +ED+ER ELL + D +   + +  +R P +++   ++       G E  TL V L  D  
Sbjct: 181  LEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVE-VTLTVDLTWD-- 237

Query: 1165 GRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRKSR---AKLDFAAPVEG 1221
                            K+EGWWLV+ D+  N+LL I+R SL +K+     KLDF AP   
Sbjct: 238  -----------DEIHGKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATE 286

Query: 1222 GKKTYTLDFMCDSYMGCDQEYSFTVD 1247
            G   YTL  + DSY+GCDQEY  + D
Sbjct: 287  GNYQYTLRLVSDSYLGCDQEYPLSFD 312

Length = 312
>gnl|CDD|217270 pfam02889, Sec63, Sec63 Brl domain Back     alignment and domain information
>gnl|CDD|214946 smart00973, Sec63, Sec63 Brl domain Back     alignment and domain information
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] Back     alignment and domain information
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] Back     alignment and domain information
>gnl|CDD|217270 pfam02889, Sec63, Sec63 Brl domain Back     alignment and domain information
>gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins Back     alignment and domain information
>gnl|CDD|214946 smart00973, Sec63, Sec63 Brl domain Back     alignment and domain information
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase Back     alignment and domain information
>gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional Back     alignment and domain information
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated Back     alignment and domain information
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases Back     alignment and domain information
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1254
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 100.0
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 100.0
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 100.0
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 100.0
PRK02362737 ski2-like helicase; Provisional 100.0
PRK00254720 ski2-like helicase; Provisional 100.0
PRK01172674 ski2-like helicase; Provisional 100.0
COG1204766 Superfamily II helicase [General function predicti 100.0
smart00611312 SEC63 Domain of unknown function in Sec63p, Brr2p 100.0
PF02889314 Sec63: Sec63 Brl domain; InterPro: IPR004179 This 100.0
COG1202830 Superfamily II helicase, archaea-specific [General 100.0
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 100.0
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 100.0
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 100.0
PRK13767876 ATP-dependent helicase; Provisional 100.0
COG1201814 Lhr Lhr-like helicases [General function predictio 100.0
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 100.0
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG09471248 consensus Cytoplasmic exosomal RNA helicase SKI2, 100.0
PTZ00110545 helicase; Provisional 100.0
KOG4434520 consensus Molecular chaperone SEC63, endoplasmic r 100.0
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 100.0
PRK02362737 ski2-like helicase; Provisional 100.0
KOG09481041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 100.0
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 100.0
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 100.0
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 100.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 100.0
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 100.0
PTZ00424401 helicase 45; Provisional 100.0
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 100.0
TIGR01970819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 100.0
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 100.0
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 100.0
PRK11664812 ATP-dependent RNA helicase HrpB; Provisional 100.0
KOG0343758 consensus RNA Helicase [RNA processing and modific 100.0
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 100.0
PRK00254720 ski2-like helicase; Provisional 100.0
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 100.0
COG45811041 Superfamily II RNA helicase [DNA replication, reco 100.0
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 100.0
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 100.0
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 100.0
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 100.0
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 100.0
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK01172674 ski2-like helicase; Provisional 100.0
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 100.0
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 100.0
COG1200677 RecG RecG-like helicase [DNA replication, recombin 100.0
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 100.0
TIGR00643630 recG ATP-dependent DNA helicase RecG. 100.0
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 100.0
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 100.0
KOG0347731 consensus RNA helicase [RNA processing and modific 100.0
COG1204766 Superfamily II helicase [General function predicti 100.0
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 100.0
PRK106891147 transcription-repair coupling factor; Provisional 100.0
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 100.0
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 100.0
KOG0346569 consensus RNA helicase [RNA processing and modific 100.0
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 100.0
COG1205851 Distinct helicase family with a unique C-terminal 100.0
PHA02653675 RNA helicase NPH-II; Provisional 100.0
KOG4284 980 consensus DEAD box protein [Transcription] 100.0
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.98
KOG0334997 consensus RNA helicase [RNA processing and modific 99.98
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.97
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.97
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.97
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 99.97
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.97
KOG0327397 consensus Translation initiation factor 4F, helica 99.97
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.97
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 99.96
KOG09261172 consensus DEAH-box RNA helicase [RNA processing an 99.96
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.96
PHA02558501 uvsW UvsW helicase; Provisional 99.96
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 99.96
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 99.95
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.95
KOG0354746 consensus DEAD-box like helicase [General function 99.95
PRK05580679 primosome assembly protein PriA; Validated 99.95
PRK13766773 Hef nuclease; Provisional 99.94
KOG0353695 consensus ATP-dependent DNA helicase [General func 99.94
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.94
PRK09694878 helicase Cas3; Provisional 99.94
PRK14701 1638 reverse gyrase; Provisional 99.93
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.93
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.93
PRK09401 1176 reverse gyrase; Reviewed 99.93
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.93
smart00611312 SEC63 Domain of unknown function in Sec63p, Brr2p 99.92
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.92
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.92
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.91
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.91
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 99.9
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.89
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.89
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.87
PF02889314 Sec63: Sec63 Brl domain; InterPro: IPR004179 This 99.86
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.86
PRK04914956 ATP-dependent helicase HepA; Validated 99.85
COG1198730 PriA Primosomal protein N' (replication factor Y) 99.85
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.84
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.84
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.82
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.81
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.8
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.78
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.78
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.76
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 99.76
KOG09471248 consensus Cytoplasmic exosomal RNA helicase SKI2, 99.74
KOG41501034 consensus Predicted ATP-dependent RNA helicase [RN 99.72
COG4096875 HsdR Type I site-specific restriction-modification 99.7
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.69
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.68
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.68
COG5407610 SEC63 Preprotein translocase subunit Sec63 [Intrac 99.67
KOG09481041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 99.67
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.66
PLN031421033 Probable chromatin-remodeling complex ATPase chain 99.65
COG1202830 Superfamily II helicase, archaea-specific [General 99.62
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 99.61
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 99.6
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.59
PRK05298652 excinuclease ABC subunit B; Provisional 99.58
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.53
KOG1123776 consensus RNA polymerase II transcription initiati 99.52
PRK14873665 primosome assembly protein PriA; Provisional 99.52
smart00487201 DEXDc DEAD-like helicases superfamily. 99.52
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.5
COG45811041 Superfamily II RNA helicase [DNA replication, reco 99.48
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 99.44
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 99.44
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 99.43
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.42
KOG0921 1282 consensus Dosage compensation complex, subunit MLE 99.42
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 99.41
PRK13767876 ATP-dependent helicase; Provisional 99.4
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 99.4
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.36
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.34
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.34
PRK097511490 putative ATP-dependent helicase Lhr; Provisional 99.33
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 99.33
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 99.31
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 99.29
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 99.26
COG4889 1518 Predicted helicase [General function prediction on 99.26
CHL00122870 secA preprotein translocase subunit SecA; Validate 99.18
PRK12903925 secA preprotein translocase subunit SecA; Reviewed 99.17
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 99.15
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.11
PRK12902939 secA preprotein translocase subunit SecA; Reviewed 99.11
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 99.09
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 99.08
PTZ00424401 helicase 45; Provisional 99.08
PF02399824 Herpes_ori_bp: Origin of replication binding prote 99.07
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 99.05
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.05
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.05
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 99.05
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.03
smart0049082 HELICc helicase superfamily c-terminal domain. 99.02
COG1201814 Lhr Lhr-like helicases [General function predictio 99.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 98.99
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 98.95
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 98.94
KOG0387923 consensus Transcription-coupled repair protein CSB 98.94
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 98.9
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 98.88
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 98.88
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 98.88
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 98.87
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 98.82
PTZ00110545 helicase; Provisional 98.8
smart0049082 HELICc helicase superfamily c-terminal domain. 98.78
TIGR00643630 recG ATP-dependent DNA helicase RecG. 98.76
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 98.75
smart00488289 DEXDc2 DEAD-like helicases superfamily. 98.75
smart00489289 DEXDc3 DEAD-like helicases superfamily. 98.75
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 98.72
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 98.7
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 98.68
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 98.62
COG0610962 Type I site-specific restriction-modification syst 98.6
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 98.59
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 98.56
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 98.55
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 98.55
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 98.53
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 98.48
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 98.39
PRK106891147 transcription-repair coupling factor; Provisional 98.37
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 98.34
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 98.28
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 98.28
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 98.27
KOG4439901 consensus RNA polymerase II transcription terminat 98.26
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 98.25
TIGR01970819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 98.16
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 98.14
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 98.1
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 98.09
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 98.08
COG1200677 RecG RecG-like helicase [DNA replication, recombin 98.08
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 98.06
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 98.04
PRK05298652 excinuclease ABC subunit B; Provisional 97.99
KOG0353695 consensus ATP-dependent DNA helicase [General func 97.99
COG4098441 comFA Superfamily II DNA/RNA helicase required for 97.98
PHA02653675 RNA helicase NPH-II; Provisional 97.97
PRK11664812 ATP-dependent RNA helicase HrpB; Provisional 97.96
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 97.94
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 97.92
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 97.91
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 97.88
PRK04914956 ATP-dependent helicase HepA; Validated 97.87
PRK111311294 ATP-dependent RNA helicase HrpA; Provisional 97.87
KOG4434520 consensus Molecular chaperone SEC63, endoplasmic r 97.85
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 97.85
PRK15483 986 type III restriction-modification system StyLTI en 97.84
TIGR019671283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 97.79
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 97.77
COG1205851 Distinct helicase family with a unique C-terminal 97.77
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 97.77
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 97.76
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 97.75
KOG0343758 consensus RNA Helicase [RNA processing and modific 97.74
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 97.72
KOG1002791 consensus Nucleotide excision repair protein RAD16 97.69
PRK13766773 Hef nuclease; Provisional 97.69
PRK09200790 preprotein translocase subunit SecA; Reviewed 97.65
KOG0354746 consensus DEAD-box like helicase [General function 97.62
PHA02558501 uvsW UvsW helicase; Provisional 97.61
PRK10536262 hypothetical protein; Provisional 97.61
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 97.6
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 97.6
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 97.6
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 97.56
KOG41501034 consensus Predicted ATP-dependent RNA helicase [RN 97.54
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 97.54
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 97.52
KOG4284980 consensus DEAD box protein [Transcription] 97.5
PF1324576 AAA_19: Part of AAA domain 97.49
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 97.45
PRK05580679 primosome assembly protein PriA; Validated 97.42
TIGR00595505 priA primosomal protein N'. All proteins in this f 97.39
KOG2340698 consensus Uncharacterized conserved protein [Funct 97.38
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 97.38
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 97.34
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 97.3
COG3421812 Uncharacterized protein conserved in bacteria [Fun 97.2
KOG0327397 consensus Translation initiation factor 4F, helica 97.16
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 97.12
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 97.12
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 97.12
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 97.09
COG11971139 Mfd Transcription-repair coupling factor (superfam 97.09
PRK10875615 recD exonuclease V subunit alpha; Provisional 97.08
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 97.07
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 97.06
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 97.05
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 97.03
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 96.99
KOG0347731 consensus RNA helicase [RNA processing and modific 96.96
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 96.93
KOG1132945 consensus Helicase of the DEAD superfamily [Replic 96.87
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 96.84
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 96.82
KOG0334997 consensus RNA helicase [RNA processing and modific 96.72
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 96.72
PRK09694878 helicase Cas3; Provisional 96.67
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 96.58
PHA02533534 17 large terminase protein; Provisional 96.5
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 96.43
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 96.33
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 96.3
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 96.26
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 96.24
COG3587985 Restriction endonuclease [Defense mechanisms] 96.2
KOG1803649 consensus DNA helicase [Replication, recombination 96.12
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 95.91
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 95.89
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 95.87
KOG18051100 consensus DNA replication helicase [Replication, r 95.81
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 95.71
PF05127177 Helicase_RecD: Helicase; InterPro: IPR007807 This 95.69
PRK14974336 cell division protein FtsY; Provisional 95.68
TIGR00376637 DNA helicase, putative. The gene product may repre 95.61
PRK06526254 transposase; Provisional 95.52
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 95.5
PRK04296190 thymidine kinase; Provisional 95.49
PRK13889988 conjugal transfer relaxase TraA; Provisional 95.44
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 95.34
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 95.34
TIGR01075715 uvrD DNA helicase II. Designed to identify uvrD me 95.31
PRK11054684 helD DNA helicase IV; Provisional 95.3
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 95.26
PRK10919672 ATP-dependent DNA helicase Rep; Provisional 95.13
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 95.12
PRK138261102 Dtr system oriT relaxase; Provisional 95.12
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 95.12
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 95.05
PRK11773721 uvrD DNA-dependent helicase II; Provisional 95.02
TIGR01547396 phage_term_2 phage terminase, large subunit, PBSX 94.99
PRK14087450 dnaA chromosomal replication initiation protein; P 94.98
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 94.94
smart00382148 AAA ATPases associated with a variety of cellular 94.88
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 94.87
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 94.84
PRK05973237 replicative DNA helicase; Provisional 94.83
PRK08181269 transposase; Validated 94.83
PRK08727233 hypothetical protein; Validated 94.81
COG1198730 PriA Primosomal protein N' (replication factor Y) 94.79
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 94.77
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 94.74
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 94.72
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 94.71
PRK12377248 putative replication protein; Provisional 94.67
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 94.66
PRK147011638 reverse gyrase; Provisional 94.62
cd01124187 KaiC KaiC is a circadian clock protein primarily f 94.59
PRK07952244 DNA replication protein DnaC; Validated 94.53
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 94.52
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 94.5
COG1444758 Predicted P-loop ATPase fused to an acetyltransfer 94.5
PLN031421033 Probable chromatin-remodeling complex ATPase chain 94.49
smart00492141 HELICc3 helicase superfamily c-terminal domain. 94.42
PHA03333752 putative ATPase subunit of terminase; Provisional 94.41
PF04408102 HA2: Helicase associated domain (HA2); InterPro: I 94.39
PHA03368738 DNA packaging terminase subunit 1; Provisional 94.39
PRK08903227 DnaA regulatory inactivator Hda; Validated 94.31
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 94.31
PRK14723767 flhF flagellar biosynthesis regulator FlhF; Provis 94.22
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 93.94
PRK11823446 DNA repair protein RadA; Provisional 93.92
PRK08084235 DNA replication initiation factor; Provisional 93.89
PRK08116268 hypothetical protein; Validated 93.89
TIGR01074664 rep ATP-dependent DNA helicase Rep. Designed to id 93.89
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 93.86
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 93.72
PRK00149450 dnaA chromosomal replication initiation protein; R 93.69
PTZ001121164 origin recognition complex 1 protein; Provisional 93.63
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 93.6
PRK06893229 DNA replication initiation factor; Validated 93.6
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 93.59
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 93.53
KOG1001674 consensus Helicase-like transcription factor HLTF/ 93.53
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 93.48
PF03796259 DnaB_C: DnaB-like helicase C terminal domain; Inte 93.46
TIGR00064272 ftsY signal recognition particle-docking protein F 93.45
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 93.43
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 93.41
PRK04328249 hypothetical protein; Provisional 93.4
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 93.4
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 93.37
CHL00181287 cbbX CbbX; Provisional 93.35
TIGR00362405 DnaA chromosomal replication initiator protein Dna 93.31
PF00004132 AAA: ATPase family associated with various cellula 93.29
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 93.28
PRK00771437 signal recognition particle protein Srp54; Provisi 93.28
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 93.25
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 93.2
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 93.17
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 93.16
smart00492141 HELICc3 helicase superfamily c-terminal domain. 93.15
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 93.04
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 92.97
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 92.95
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 92.93
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 92.91
TIGR01073726 pcrA ATP-dependent DNA helicase PcrA. Designed to 92.87
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 92.84
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 92.84
KOG2373514 consensus Predicted mitochondrial DNA helicase twi 92.81
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 92.79
COG4626546 Phage terminase-like protein, large subunit [Gener 92.77
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 92.75
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 92.55
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 92.52
PRK12766232 50S ribosomal protein L32e; Provisional 92.47
PRK06067234 flagellar accessory protein FlaH; Validated 92.46
TIGR02237209 recomb_radB DNA repair and recombination protein R 92.43
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 92.35
PRK14088440 dnaA chromosomal replication initiation protein; P 92.31
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 92.31
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 92.31
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 92.27
PLN03025319 replication factor C subunit; Provisional 92.24
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 92.17
cd01393226 recA_like RecA is a bacterial enzyme which has rol 92.16
COG1484254 DnaC DNA replication protein [DNA replication, rec 92.15
COG1702348 PhoH Phosphate starvation-inducible protein PhoH, 92.03
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 91.99
PRK06904472 replicative DNA helicase; Validated 91.99
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 91.96
PRK14086617 dnaA chromosomal replication initiation protein; P 91.95
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 91.94
smart0084792 HA2 Helicase associated domain (HA2) Add an annota 91.92
PRK12904830 preprotein translocase subunit SecA; Reviewed 91.92
PRK05748448 replicative DNA helicase; Provisional 91.91
PRK12422445 chromosomal replication initiation protein; Provis 91.89
PRK13107908 preprotein translocase subunit SecA; Reviewed 91.86
PRK06835329 DNA replication protein DnaC; Validated 91.83
PRK05642234 DNA replication initiation factor; Validated 91.82
COG0556663 UvrB Helicase subunit of the DNA excision repair c 91.81
PF03354477 Terminase_1: Phage Terminase ; InterPro: IPR005021 91.8
TIGR02012321 tigrfam_recA protein RecA. This model describes or 91.78
COG2256436 MGS1 ATPase related to the helicase subunit of the 91.76
PRK00411394 cdc6 cell division control protein 6; Reviewed 91.63
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 91.61
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 91.6
PRK10416318 signal recognition particle-docking protein FtsY; 91.57
PRK13833323 conjugal transfer protein TrbB; Provisional 91.49
cd00983325 recA RecA is a bacterial enzyme which has roles in 91.42
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 91.38
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 91.35
PRK09354349 recA recombinase A; Provisional 91.26
TIGR03600421 phage_DnaB phage replicative helicase, DnaB family 91.21
PRK08533230 flagellar accessory protein FlaH; Reviewed 91.19
COG0593408 DnaA ATPase involved in DNA replication initiation 91.19
PRK08506472 replicative DNA helicase; Provisional 91.18
KOG0346569 consensus RNA helicase [RNA processing and modific 91.08
KOG1133821 consensus Helicase of the DEAD superfamily [Replic 91.08
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 91.01
PRK09361225 radB DNA repair and recombination protein RadB; Pr 91.01
PF05729166 NACHT: NACHT domain 90.98
PRK06921266 hypothetical protein; Provisional 90.97
TIGR02785 1232 addA_Gpos recombination helicase AddA, Firmicutes 90.8
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 90.74
PRK147121623 conjugal transfer nickase/helicase TraI; Provision 90.73
TIGR00665434 DnaB replicative DNA helicase. This model describe 90.6
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 90.58
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 90.58
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 90.52
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 90.52
smart00491142 HELICc2 helicase superfamily c-terminal domain. 90.48
TIGR02928365 orc1/cdc6 family replication initiation protein. M 90.45
PRK12402337 replication factor C small subunit 2; Reviewed 90.43
PRK07004460 replicative DNA helicase; Provisional 90.41
PRK05707328 DNA polymerase III subunit delta'; Validated 90.32
PRK08760476 replicative DNA helicase; Provisional 90.24
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 90.24
COG3973747 Superfamily I DNA and RNA helicases [General funct 90.15
PRK137091747 conjugal transfer nickase/helicase TraI; Provision 90.04
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 90.04
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 89.95
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 89.92
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 89.89
COG0466782 Lon ATP-dependent Lon protease, bacterial type [Po 89.87
PRK13894319 conjugal transfer ATPase TrbB; Provisional 89.85
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 89.53
cd01394218 radB RadB. The archaeal protein radB shares simila 89.51
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 89.5
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 89.46
cd03115173 SRP The signal recognition particle (SRP) mediates 89.43
PRK05636505 replicative DNA helicase; Provisional 89.4
PRK07940394 DNA polymerase III subunit delta'; Validated 89.32
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 89.31
PRK14873665 primosome assembly protein PriA; Provisional 89.3
PF13871278 Helicase_C_4: Helicase_C-like 89.25
PRK04195482 replication factor C large subunit; Provisional 89.12
COG0552340 FtsY Signal recognition particle GTPase [Intracell 89.07
PRK08006471 replicative DNA helicase; Provisional 89.04
PRK09112351 DNA polymerase III subunit delta'; Validated 89.0
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 88.93
PRK10867433 signal recognition particle protein; Provisional 88.91
PHA03372668 DNA packaging terminase subunit 1; Provisional 88.91
smart00491142 HELICc2 helicase superfamily c-terminal domain. 88.89
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 88.83
COG0470325 HolB ATPase involved in DNA replication [DNA repli 88.71
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 88.63
PRK04301 317 radA DNA repair and recombination protein RadA; Va 88.53
PF05707193 Zot: Zonular occludens toxin (Zot); InterPro: IPR0 88.52
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 88.5
PRK08769319 DNA polymerase III subunit delta'; Validated 88.47
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 88.42
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 88.38
PRK05595444 replicative DNA helicase; Provisional 88.25
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 88.2
PHA02544316 44 clamp loader, small subunit; Provisional 88.18
KOG0298 1394 consensus DEAD box-containing helicase-like transc 88.12
PHA00350399 putative assembly protein 88.09
PRK09165497 replicative DNA helicase; Provisional 87.95
KOG09261172 consensus DEAH-box RNA helicase [RNA processing an 87.82
PRK06321472 replicative DNA helicase; Provisional 87.8
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-152  Score=1339.00  Aligned_cols=879  Identities=71%  Similarity=1.148  Sum_probs=826.5

Q ss_pred             CCHHHHHHHHHHHhCCCCcEEEechhhhhhcCccceEEEEecCccccCCCCccccCCHHHHHHHhcccCCCCCCCcceEE
Q 000849            1 MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI   80 (1254)
Q Consensus         1 l~~~~R~~ve~~f~~g~i~vl~~T~tl~~Gvnlp~~~vii~~~~~~~~~~~~~~~~~~~~~~qm~GRAGR~~~~~~g~~~   80 (1254)
                      |.+.+|.++|++|++|+++|+|||+|||||||||||+||||||+.|||++|+|.++++.|++||.|||||||+|+.|+++
T Consensus       617 l~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegi  696 (1674)
T KOG0951|consen  617 LNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGI  696 (1674)
T ss_pred             CCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCcee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCcHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhccccChHHHHHHHhhcceeEeeccCCcccCCCCCcCchhHH
Q 000849           81 IITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLGTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLG  160 (1254)
Q Consensus        81 i~~~~~~~~~~~~~~~~~~~i~s~l~~~l~~~l~~~i~~~~~~~~~~~~~~l~~t~~~~~~~~~p~~y~~~~~~~~~~~~  160 (1254)
                      |++.+++..+|.++++++.||||++...+.+.||+||+.| +.+.+++++|+.+||+|+||.+||..|++++...|..++
T Consensus       697 iit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le  775 (1674)
T KOG0951|consen  697 IITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLE  775 (1674)
T ss_pred             eccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHH
Confidence            9999999999999999999999999999999999999999 999999999999999999999999999999997799999


Q ss_pred             HHHHHHHHHHHHHhhhcCcccccCccCceeec------------------------------------------------
Q 000849          161 ERITDLIHTAANVLDRNNLVKYGRKSGYFQSE------------------------------------------------  192 (1254)
Q Consensus       161 ~~~~~~~~~~~~~L~~~~~i~~~~~~~~~~~t------------------------------------------------  192 (1254)
                      +.+.+++++|+..|+++|+|.||..+|.+.+|                                                
T Consensus       776 ~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr  855 (1674)
T KOG0951|consen  776 QRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVR  855 (1674)
T ss_pred             HHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCcc
Confidence            99999999999999999999999999998888                                                


Q ss_pred             -ccHHHHHHHhccCCccCCCCCCChhHHHHHHHHHHHccccccCccccccC-----cHHHHHHHHHHHHHhcCcHHHHHH
Q 000849          193 -KIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SAGRLSRALFEIVLKRGWSQLAEK  266 (1254)
Q Consensus       193 -~e~~~l~~l~~~~~~~~~~~~~~~~~Kv~~Llq~~is~~~~~~~~l~~D~-----~a~ri~~a~~ei~~~~~~~~~a~~  266 (1254)
                       +|+.+|.++++++|||+++..+.|+.|+|+|||+|||++.+++|+|.+||     +|+|++||+|||+..+||+..+..
T Consensus       856 ~~ek~el~~l~~~vpIpire~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~  935 (1674)
T KOG0951|consen  856 EEEKMELAKLLERVPIPIRENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQM  935 (1674)
T ss_pred             HHHHHHhhhhcccCCcCchhccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHHH
Confidence             56789999999999999999999999999999999999999999999999     999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCCCcccccCCCCHHHHHHHHhcCCC--------------------CCC------------------
Q 000849          267 ALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFF--------------------LGK------------------  308 (1254)
Q Consensus       267 ~l~l~~~i~~~~w~~~~~L~q~~~i~~~~~~~l~~~~~~--------------------~g~------------------  308 (1254)
                      ++++|||++.++|+..+||+||+|++.+++++|+.+.++                    +|+                  
T Consensus       936 ~l~~ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~k~~~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~~v 1015 (1674)
T KOG0951|consen  936 ALNLCKMVEKRMWPTQTPLRQFKGCPKEVLRRLEKKELPWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSAHV 1015 (1674)
T ss_pred             HHHhHhHhhhhcccccCchhhcCCCCHHHHHHHHhccCcchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeeeee
Confidence            999999999999999999999999999999999999877                    333                  


Q ss_pred             -CCccccceEEEEEeeeeeecccccCcceEEEEEEEeCCCCeEEEEEeeeeccccCCcceEEEEEeeCCCCCCCC-----
Q 000849          309 -PITRTVLRVELTITPDFQWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQ-----  382 (1254)
Q Consensus       309 -pi~~~~~~~~~~~~~~~~w~~~~~g~~~~f~~~ved~~~~~il~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~-----  382 (1254)
                       |||++++++++.++|+|.||.++||..|+||++|||.||++|+|++.+.++++    +|.++|++|+++| ||+     
T Consensus      1016 qpitr~~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dge~il~~e~~~~~k~----~~~v~ft~~~~~~-pP~~fi~l 1090 (1674)
T KOG0951|consen 1016 QPITRSVYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDGEKILHHEFFLLKKK----EHTVNFTVPLFEP-PPQYFIRL 1090 (1674)
T ss_pred             eeeeeeEEEEEEEEeecccchhhhcccccceEEEEEccCccceeeeeeEEeccC----ceEEEEEeecCCC-CCceEEEE
Confidence             99999999999999999999999999999999999999999999999999886    8999999999999 776     


Q ss_pred             -----------------cccCCCCCCCCCCCCCCCcccccccCCchHHHHhccCCCcChHHHHHHHHHhcCCchHHHHHH
Q 000849          383 -----------------HLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAAL  445 (1254)
Q Consensus       383 -----------------~l~~p~~~~~~~~ll~l~~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~~~~~~~~~n~lv~~~  445 (1254)
                                       ++++|.++|++|+++|+++.|++++.++.+..+|..|   ||+|+|+|+.++++++|++|+  
T Consensus      1091 vSd~wl~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~~---n~iqtqVf~~~y~~nd~v~vg-- 1165 (1674)
T KOG0951|consen 1091 VSDRWLHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQDF---NPIQTQVFTSLYNTNDNVLVG-- 1165 (1674)
T ss_pred             eeccccCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhhcccc---CCceEEEEeeeecccceEEEe--
Confidence                             8999999999999999999999999999999997643   999999999999999999999  


Q ss_pred             HhhcccCCChHHHHHHhhCCcceeeeeeccCCCchHHHHHHHHHHHHHhhcCCCCcEEEEEcchHHHHHHHHHHHHHhhc
Q 000849          446 SRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFG  525 (1254)
Q Consensus       446 ~~~~~f~~~~~Q~~~~~~i~~~~~viv~apTGsGKT~~~~l~il~~l~~~~~~~~~~vl~i~P~r~La~q~~~~~~~~~~  525 (1254)
                                                  ||+|||||.|+.+++++   . ...+  +++|++|..+.+..++..|.++|+
T Consensus      1166 ----------------------------a~~gsgkt~~ae~a~l~---~-~~~~--~~vyi~p~~~i~~~~~~~w~~~f~ 1211 (1674)
T KOG0951|consen 1166 ----------------------------APNGSGKTACAELALLR---P-DTIG--RAVYIAPLEEIADEQYRDWEKKFS 1211 (1674)
T ss_pred             ----------------------------cCCCCchhHHHHHHhcC---C-ccce--EEEEecchHHHHHHHHHHHHHhhc
Confidence                                        99999999999999986   1 2344  999999999999999999999999


Q ss_pred             cccCcEEEEeccccccchhhcccCcEEEEcHhhHHHHHHhhhcccccceeeEEEecccccccCCCccHHHHHHHHHHHHH
Q 000849          526 KELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMRYIA  605 (1254)
Q Consensus       526 ~~~~~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~v~liIiDEaH~l~~~~g~~~e~~~~~l~~~~  605 (1254)
                      ...|..+..++|+...+.+.++.++|+|+||++|+.+ +      ..+.+++.|.||.|++++..|+.++.+++ ++++.
T Consensus      1212 ~~~G~~~~~l~ge~s~~lkl~~~~~vii~tpe~~d~l-q------~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia 1283 (1674)
T KOG0951|consen 1212 KLLGLRIVKLTGETSLDLKLLQKGQVIISTPEQWDLL-Q------SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIA 1283 (1674)
T ss_pred             cccCceEEecCCccccchHHhhhcceEEechhHHHHH-h------hhhhcceEeeehhhhhcccCCceEEEEee-HHHHH
Confidence            9999999999999999999999999999999999877 2      47889999999999999889999999999 99999


Q ss_pred             hhcCCCcEEEEecCCCCChHHHHHhhcCCCCeeEecCCCCcccccEEEEeeccCCChHHHHHhhCHHHHHHHHhhhhcCC
Q 000849          606 SQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNFEARMKAMTKPTYTAIMQHAKNEK  685 (1254)
Q Consensus       606 ~~~~~~~rii~lSATl~~~~~l~~~l~~~~~~~~~~~~~~r~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  685 (1254)
                      .++.+++|++++|..+.|+.|+   +|....++|||.++.||+|+++++..++..++..++.+|.++.|..+.++..+++
T Consensus      1284 ~q~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k 1360 (1674)
T KOG0951|consen 1284 SQLEKKIRVVALSSSLANARDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRK 1360 (1674)
T ss_pred             HHHHhheeEEEeehhhccchhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCC
Confidence            9999999999999999999988   8999999999999999999999999999999999999999999999999989999


Q ss_pred             CeEEEecChhhHHHHHHHHHHHhhccCcccccccccChhchhhHHhhcChHHHHHHhhccceeecCCCCHHHHHHHHHHH
Q 000849          686 PALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLF  765 (1254)
Q Consensus       686 ~~lVF~~s~~~~~~la~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~~v~~~h~~l~~~~R~~v~~~F  765 (1254)
                      +++||+++|+.|..+|..+...+..+...   ++....++        .+..|++.+.+||+  |.||+..+...+-..|
T Consensus      1361 ~~~vf~p~rk~~~~~a~~~~~~s~~~~~~---~l~~~~e~--------~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~ 1427 (1674)
T KOG0951|consen 1361 PAIVFLPTRKHARLVAVDLVTFSHADEPD---YLLSELEE--------CDETLRESLKHGVG--HEGLSSNDQEIVQQLF 1427 (1674)
T ss_pred             CeEEEeccchhhhhhhhccchhhccCcHH---HHHHHHhc--------chHhhhhccccccc--ccccCcchHHHHHHHH
Confidence            99999999999999999988776554221   22111111        57889999999999  9999999999999999


Q ss_pred             hcCCceEEEeCcccccccCCcceee--------cccc----cCCHHHHHHhhcccCCCCCCCCceEEEEccCCcHHHHHH
Q 000849          766 EAGKIKVCVMSSSMCWEVPLTAHLA--------TGRK----MLILTTLLQMMGHAGRPLLDNSEKCVILCHAPHKEYYKK  833 (1254)
Q Consensus       766 ~~g~~~VLVaT~~l~~Gvdip~~~V--------~~~~----~~s~~~~~Qr~GRaGR~g~d~~G~~iil~~~~~~~~~~~  833 (1254)
                      ..|.++|+|...- .+|+-..++.|        +|+.    +|+++++.||+|+|.|     .|.|+++|+..++++|++
T Consensus      1428 e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~-----~~k~vi~~~~~~k~yykk 1501 (1674)
T KOG0951|consen 1428 EAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG-----AGKCVIMCHTPKKEYYKK 1501 (1674)
T ss_pred             hcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC-----CccEEEEecCchHHHHHH
Confidence            9999999999988 99999887776        4443    3899999999999988     578999999999999999


Q ss_pred             hhcCCcccccccchhHHHHHHHHHhhCccCCHHHHHHHHHHhc---ccccCCCcccCCCCCcccHHHHHHHHHHHHHHHh
Q 000849          834 FLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDL  910 (1254)
Q Consensus       834 ~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~d~~~~l~~tf---r~~~nP~~y~~~~~~~~~~~~~l~~~i~~~l~~L  910 (1254)
                      |+.+++|+||++...|.|++|+||+.+++.++|||+||++|+|   |+.+||+||++.+.+++++++++++++++++..|
T Consensus      1502 fl~e~lPves~lq~~lhd~~n~ei~~~tienkqd~vd~lt~s~~yrr~~~np~yy~l~~v~~~~~S~~lS~lvet~l~dl 1581 (1674)
T KOG0951|consen 1502 FLYEPLPVESHLQHCLHDNFNAEIVTKTIENKQDAVDYLTWSFMYRRLPQNPNYYNLQGVSHRHLSDFLSELVETTLNDL 1581 (1674)
T ss_pred             hccCcCchHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccccCcceecccccchhhhhhHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999   9999999999999999999999999999999999


Q ss_pred             HHCCCceecCCCCCCcCchhHHHHhhcCChhhHHHHHhcccCcCcHHH
Q 000849          911 EATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKG  958 (1254)
Q Consensus       911 ~~~g~i~~~~~~~~~~t~lG~i~s~~~i~~~T~~~~~~~l~~~~~~~~  958 (1254)
                      +.+.||++++...    .+|.|+++||+++-|+..|...++.+.....
T Consensus      1582 ~~s~~i~v~dad~----~l~~Ias~y~i~y~ti~~f~~~L~~~t~~kg 1625 (1674)
T KOG0951|consen 1582 EESKCIEVDDEDD----SLGMIASYYYISYITIERFSSSLSEKTKMKG 1625 (1674)
T ss_pred             hcCceEEeecccc----ccchhhhhceeeeEeeehhhhhhhhhhhhhh
Confidence            9999999987554    3999999999999999999887766554433

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins Back     alignment and domain information
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>KOG2340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>TIGR01074 rep ATP-dependent DNA helicase Rep Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair] Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>COG4626 Phage terminase-like protein, large subunit [General function prediction only] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>PRK12766 50S ribosomal protein L32e; Provisional Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06904 replicative DNA helicase; Validated Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK05748 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08506 replicative DNA helicase; Provisional Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>TIGR00665 DnaB replicative DNA helicase Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK07004 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08760 replicative DNA helicase; Provisional Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only] Back     alignment and domain information
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PRK05636 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK08006 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>PHA03372 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PRK04301 radA DNA repair and recombination protein RadA; Validated Back     alignment and domain information
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05595 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PHA00350 putative assembly protein Back     alignment and domain information
>PRK09165 replicative DNA helicase; Provisional Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06321 replicative DNA helicase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1254
4f91_B1724 Brr2 Helicase Region Length = 1724 0.0
4f91_B 1724 Brr2 Helicase Region Length = 1724 1e-72
4f92_B1724 Brr2 Helicase Region S1087l Length = 1724 0.0
4f92_B 1724 Brr2 Helicase Region S1087l Length = 1724 6e-72
2q0z_X339 Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. 1e-88
3im1_A328 Structure Of The C-Terminal Sec63 Unit Of Yeast Brr 1e-47
3hib_A318 Crystal Structure Of The Second Sec63 Domain Of Yea 5e-45
2p6r_A702 Crystal Structure Of Superfamily 2 Helicase Hel308 5e-26
2zj2_A720 Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt 5e-26
2va8_A715 Dna Repair Helicase Hel308 Length = 715 9e-26
3l9o_A1108 Crystal Structure Of Mtr4, A Co-Factor Of The Nucle 2e-11
2xgj_A1010 Structure Of Mtr4, A Dexh Helicase Involved In Nucl 3e-11
4a4z_A 997 Crystal Structure Of The S. Cerevisiae Dexh Helicas 2e-10
>pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 Back     alignment and structure 
Iteration: 1

 Score = 1450 bits (3753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 744/1385 (53%), Positives = 934/1385 (67%), Gaps = 186/1385 (13%)
Query: 1    MKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLD 60
            M R DR LVEDLF D H+QVLVSTA LAWGVNLPAHTVIIKGTQVY+PEKG WTEL  LD
Sbjct: 388  MTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALD 447
Query: 61   IMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVLG 120
            I+QMLGRAGRPQYD+ GEGI+IT H ELQYYLSL+NQQLPIESQ VSKL ++LNAEIVLG
Sbjct: 448  ILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLG 507
Query: 121  TVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVL--DITLGERITDLIHTAANVLDRNN 178
             VQNAK+A NW+ Y YLY RMLR+P LYG+S + L  D  L +R  DL+HTAA +LD+NN
Sbjct: 508  NVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNN 567
Query: 179  LVKYGRKSGYFQ------------------------------------------------ 190
            LVKY +K+G FQ                                                
Sbjct: 568  LVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNIT 627
Query: 191  -SEKIKMELAKLLDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDM-----SA 244
              E+ K+EL KLL+RVPIPVKES+EEPSAKINVLLQ +ISQLKLEG +L +DM     SA
Sbjct: 628  VREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQSA 687
Query: 245  GRLSRALFEIVLKRGWSQLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 304
            GRL RA+FEIVL RGW+QL +K L L KM+ KRMW    PLRQF  +P E++ K+EKK+F
Sbjct: 688  GRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNF 747
Query: 305  --------------------FLGK-------------------PITRTVLRVELTITPDF 325
                                 +GK                   PITR+ L+VELTITPDF
Sbjct: 748  PFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDF 807
Query: 326  QWDDKVHGYVELFWVIVEDNDGDYILHHEYFLLKKQYTEEDHSLNFTVPIYEPLPPQ--- 382
            QWD+KVHG  E FW++VED D + ILHHEYFLLK +Y +++H + F VP++EPLPPQ   
Sbjct: 808  QWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFI 867
Query: 383  -------------------HLILPEKFPPPTELLDLQLLPVTALQNPSYEALYQN-YKLF 422
                               HLILPEK+PPPTELLDLQ LPV+AL+N ++E+LYQ+ +  F
Sbjct: 868  RVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFF 927
Query: 423  NPIQTQVFAVLYNTEDNVLVAALSRKLMFARLPAKQRITAALPNIILVLQLAPTGSGKTI 482
            NPIQTQVF  +YN++DNV V A                              PTGSGKTI
Sbjct: 928  NPIQTQVFNTVYNSDDNVFVGA------------------------------PTGSGKTI 957
Query: 483  CAEFAILRNHQRASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETAMD 542
            CAEFAILR   ++SE    R VYI P+EALA+Q Y DW  KF   L   VV LT ET+ D
Sbjct: 958  CAEFAILRMLLQSSEG---RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTD 1014
Query: 543  LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVARMR 602
            LKLL KG IIISTPEKWD LSRRWKQRK VQ ++LF++DE+HLIGG+ GPVLEVI +RMR
Sbjct: 1015 LKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMR 1074
Query: 603  YIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDITNF 662
            YI+SQ+E  IRIVALS+SL+NAKD+  W+G S+   FNF P VRPVPLE+ IQG +I++ 
Sbjct: 1075 YISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHT 1134
Query: 663  EARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCS 722
            + R+ +M KP Y AI +H+  +KP +VFVPSRK  RLTA+D++  +C    Q+  FL C+
Sbjct: 1135 QTRLLSMAKPVYHAITKHSP-KKPVIVFVPSRKQTRLTAIDILT-TCAADIQRQRFLHCT 1192
Query: 723  AKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWE 782
             K++ P++  + +  L+ TL  GVGYLHEGL+  ++ +V  LF +G I+V V S S+CW 
Sbjct: 1193 EKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWG 1252
Query: 783  VPLTAHLATGRKMLILTT-----------------LLQMMGHAGRPLLDNSEKCVILCHA 825
            + + AHL     ++I+ T                 +LQM+GHA RPL D+  +CVI+C  
Sbjct: 1253 MNVAAHL-----VIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQG 1307
Query: 826  PHKEYYKKFLYEAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF---RLTQNP 882
              K+++KKFLYE  PVESHL H +HD+FNAEIV   IENKQDAVDYLTWTF   R+TQNP
Sbjct: 1308 SKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNP 1367
Query: 883  NYYNLQGVSHRHLSDHLSELVENTISDLEATRSIIMEDDMDLCPSNYGMIASYYYISYKT 942
            NYYNLQG+SHRHLSDHLSELVE T+SDLE ++ I +ED+MD+ P N GMIA+YYYI+Y T
Sbjct: 1368 NYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTT 1427
Query: 943  IECFSSSLTSKTKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPH 1002
            IE FS SL +KTK++GL+E++++A+EY  +PIR  E+ L+R+L         NPK  DPH
Sbjct: 1428 IELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPH 1487
Query: 1003 VKANALLQAHFSARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQM 1062
            VK N LLQAH S   +   L+ D E++L  A RL+QA VDV+SSNGWLS AL AME++QM
Sbjct: 1488 VKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQM 1547
Query: 1063 VTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFXXXXXXXXXXXXXXQMSDVQLL 1122
            VTQ MW  DS L QLPHFT +  KRC +   + +E+VF              Q++D Q+ 
Sbjct: 1548 VTQAMWSKDSYLKQLPHFTSEHIKRCTD---KGVESVFDIMEMEDEERNALLQLTDSQIA 1604
Query: 1123 DIARFCNRFPNIDMSYKVQDSENVRAGGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKE 1182
            D+ARFCNR+PNI++SY+V D +++R+GG    L V LER+       GPV +  +P+ +E
Sbjct: 1605 DVARFCNRYPNIELSYEVVDKDSIRSGGPVVVL-VQLERE---EEVTGPVIAPLFPQKRE 1660
Query: 1183 EGWWLVVDDAKTNQLLAIKRVSLQRKSRAKLDFAAPVEGGKKTYTLDFMCDSYMGCDQEY 1242
            EGWW+V+ DAK+N L++IKR++LQ+K++ KLDF AP  G    YTL FM D+YMGCDQEY
Sbjct: 1661 EGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATGA-HNYTLYFMSDAYMGCDQEY 1719
Query: 1243 SFTVD 1247
             F+VD
Sbjct: 1720 KFSVD 1724
>pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 Back     alignment and structure
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 Back     alignment and structure
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 Back     alignment and structure
>pdb|2Q0Z|X Chain X, Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. Northeast Structural Genomics Target Hr1979 Length = 339 Back     alignment and structure
>pdb|3IM1|A Chain A, Structure Of The C-Terminal Sec63 Unit Of Yeast Brr2, P212121 Form Length = 328 Back     alignment and structure
>pdb|3HIB|A Chain A, Crystal Structure Of The Second Sec63 Domain Of Yeast Brr2 Length = 318 Back     alignment and structure
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 Back     alignment and structure
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 Length = 720 Back     alignment and structure
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 Back     alignment and structure
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108 Back     alignment and structure
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010 Back     alignment and structure
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1254
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 1e-163
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 2e-70
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 1e-159
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 3e-69
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 1e-146
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 3e-64
2q0z_X339 Protein Pro2281; SEC63, SEC, NESG, HR1979, structu 6e-97
2q0z_X339 Protein Pro2281; SEC63, SEC, NESG, HR1979, structu 1e-12
3im1_A328 Protein SNU246, PRE-mRNA-splicing helicase BRR2; A 2e-91
3im1_A328 Protein SNU246, PRE-mRNA-splicing helicase BRR2; A 4e-09
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 6e-27
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 3e-14
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 2e-26
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 3e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-16
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
3b6e_A216 Interferon-induced helicase C domain-containing P; 2e-14
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 6e-14
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 3e-13
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 7e-13
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 9e-09
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 2e-12
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 2e-12
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 4e-10
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 1e-09
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 2e-07
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 5e-06
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 3e-05
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 7e-05
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
 Score =  504 bits (1299), Expect = e-163
 Identities = 153/788 (19%), Positives = 289/788 (36%), Gaps = 122/788 (15%)

Query: 394  TELLDLQLLPVTALQNPSYEALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALSRKLMFAR 453
             + L +     + L+    E+       F P Q +          N L++          
Sbjct: 3    VDELRVDERIKSTLKERGIES-------FYPPQAEALKSGILEGKNALISI--------- 46

Query: 454  LPAKQRITAALPNIILVLQLAPTGSGKTICAEFAILRNHQRASETGVMRAVYIAPIEALA 513
                                 PT SGKT+ AE A++    R    G  +AVYI P++ALA
Sbjct: 47   ---------------------PTASGKTLIAEIAMVH---RILTQG-GKAVYIVPLKALA 81

Query: 514  KQRYCDWERKFGKELGMCVVELTVETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQ 573
            ++++ +++    +++G+ V   T +     + L K  III+T EK+D+L R      +++
Sbjct: 82   EEKFQEFQDW--EKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHG--SSWIK 137

Query: 574  QVSLFIIDELHLIGGQG-GPVLEVIVARMRYIASQVENKIRIVALSTSLANAKDLGEWIG 632
             V + + DE+HLIG +  G  LEVI+A M         K +I+ LS ++ N ++L EW+ 
Sbjct: 138  DVKILVADEIHLIGSRDRGATLEVILAHML-------GKAQIIGLSATIGNPEELAEWLN 190

Query: 633  ASSHGVFNFPPGVRPVPLEIQIQGVDITNFE----ARMKAMTKPTYTAIMQHAKNEKPAL 688
            A            RPV L   +       +E     R  +  +  Y AI +     K AL
Sbjct: 191  AE-----LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKK----KGAL 241

Query: 689  VFVPSRKYARLTAVDLMIYSCKDSDQKSAFLLCSAKEVEPHVSIIQEEMLRATLRLGVGY 748
            +FV  R+ A   A++L         +    +    +  +        E L   +R GV +
Sbjct: 242  IFVNMRRKAERVALELSKKVKSLLTKP--EIRALNELADSLEENPTNEKLAKAIRGGVAF 299

Query: 749  LHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMCWEVPLTAHL----------ATGRKMLIL 798
             H GL + ++ +V   F  G IK  V + ++   +   A              G + + +
Sbjct: 300  HHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPI 359

Query: 799  TTLLQMMGHAGRPLLDNSEKCVILCHA--PHKEYYKKFLYEAFPVESHL--HHFLHDNFN 854
              + QM+G AGRP  D   + +I+  +  P +        +   + S L     L     
Sbjct: 360  IEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVL 419

Query: 855  AEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEATR 914
            A I        ++ + +++ TF   Q  + Y+L             E + N +  L    
Sbjct: 420  ALIATFGYSTVEEILKFISNTFYAYQRKDTYSL------------EEKIRNILYFLLENE 467

Query: 915  SIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTK---MKGLLEVLASASEYAQ 971
             I +  +  + P + G+  +  YI   T + F   +    K     G+  +++   +   
Sbjct: 468  FIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITP 527

Query: 972  LPIRPGEEE----LVRRLINHQRFSFANPKCTDPHV--------KANALLQAHFSARHME 1019
                  E E          +   F        DP++        K   +L A  +     
Sbjct: 528  FNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEG 587

Query: 1020 ------GNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSM 1073
                       D  +++ +A  L+ ++ ++    G   +      +   V  G+ E    
Sbjct: 588  EIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIP 647

Query: 1074 LLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPN 1133
            L+QLP   +  A+    +      ++ D+ +   +E  ++  +             +F  
Sbjct: 648  LMQLPLVGRRRARALYNS---GFRSIEDISQARPEELLKIEGIGV----KTVEAIFKFLG 700

Query: 1134 IDMSYKVQ 1141
             ++    +
Sbjct: 701  KNVKISEK 708
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 Back     alignment and structure
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Length = 339 Back     alignment and structure
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Length = 339 Back     alignment and structure
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Length = 328 Back     alignment and structure
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Length = 328 Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1254
d2q0zx1176 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo 4e-58
d2q0zx1176 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo 1e-22
d2q0zx2114 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo 7e-43
d2p6ra4201 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob 6e-22
d2p6ra4201 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob 2e-13
d2p6ra185 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobu 1e-17
d2p6ra185 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobu 2e-07
d2p6ra3202 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus 5e-10
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 2e-06
d1oywa2206 c.37.1.19 (A:1-206) RecQ helicase domain {Escheric 2e-06
d1a1va1136 c.37.1.14 (A:190-325) HCV helicase domain {Human h 1e-04
d1wp9a1200 c.37.1.19 (A:1-200) putative ATP-dependent RNA hel 2e-04
d1yksa1140 c.37.1.14 (A:185-324) YFV helicase domain {Yellow 2e-04
d1rifa_282 c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 4e-04
d1gkub1237 c.37.1.16 (B:1-250) Helicase-like "domain" of reve 4e-04
d1hv8a1208 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase 5e-04
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 5e-04
d2dt5a2126 c.2.1.12 (A:78-203) Transcriptional repressor Rex, 0.001
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 176 Back     information, alignment and structure

class: All alpha proteins
fold: Sec63 N-terminal domain-like
superfamily: Sec63 N-terminal domain-like
family: Sec63 N-terminal domain
domain: Protein pro2281
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  195 bits (498), Expect = 4e-58
 Identities = 96/179 (53%), Positives = 129/179 (72%), Gaps = 3/179 (1%)

Query: 954  TKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHF 1013
            TK++GL+E++++A+EY  +PIR  E+ L+R+L         NPK  DPHVK N LLQAH 
Sbjct: 1    TKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHL 60

Query: 1014 SARHMEGNLKLDQEKVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSM 1073
            S   +   L+ D E++L  A RL+QA VDV+SSNGWLS AL AME++QMVTQ MW  DS 
Sbjct: 61   SRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSY 120

Query: 1074 LLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFP 1132
            L QLPHFT +  KRC +   + +E+VFD++EMED+ER  LLQ++D Q+ D+ARFCNR+P
Sbjct: 121  LKQLPHFTSEHIKRCTD---KGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP 176
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 176 Back     information, alignment and structure
>d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 114 Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 Back     information, alignment and structure
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 85 Back     information, alignment and structure
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 85 Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 126 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1254
d2q0zx1176 Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 100.0
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 100.0
d2q0zx2114 Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 99.95
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.95
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.94
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.94
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.94
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.94
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.94
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.94
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.94
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 99.93
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.91
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 99.9
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.88
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.88
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.88
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.86
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.86
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.84
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.83
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.81
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.8
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.8
d2q0zx1176 Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 99.79
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.79
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.79
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.79
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.77
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.77
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.75
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.68
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.66
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.65
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.64
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.63
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.61
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.57
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.49
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.47
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.36
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.3
d2p6ra185 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.27
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.24
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 99.23
d2p6ra2198 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.23
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.19
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.19
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.14
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.12
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.09
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.08
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.05
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.04
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 99.04
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.03
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 99.01
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 98.98
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 98.95
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 98.93
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 98.79
d2p6ra185 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.7
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 98.61
d2p6ra2198 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.5
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 98.47
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 98.46
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.43
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 98.43
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 98.3
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 98.09
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 97.92
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 97.91
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 97.9
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 97.76
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 97.71
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 97.66
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 97.56
d1ls1a2207 GTPase domain of the signal sequence recognition p 97.37
d2qy9a2211 GTPase domain of the signal recognition particle r 97.28
d1vmaa2213 GTPase domain of the signal recognition particle r 97.19
d1okkd2207 GTPase domain of the signal recognition particle r 96.92
d1j8yf2211 GTPase domain of the signal sequence recognition p 96.88
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 96.85
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 96.64
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 96.44
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 96.44
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 95.48
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 95.41
d1pzna161 DNA repair protein Rad51, N-terminal domain {Archa 95.29
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 95.06
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 94.79
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 94.76
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 93.92
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 93.75
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 93.71
d1szpa164 DNA repair protein Rad51, N-terminal domain {Baker 93.7
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 93.48
d1w36b1485 Exodeoxyribonuclease V beta chain (RecB), N-termin 93.39
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 93.21
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 92.95
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 92.62
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 92.52
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 92.48
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 91.16
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 91.14
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 90.74
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 90.31
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 90.17
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 89.91
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 89.83
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 89.69
d1b22a_70 DNA repair protein Rad51, N-terminal domain {Human 89.69
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 88.87
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 88.44
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 88.36
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 86.16
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 86.06
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 86.06
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 85.11
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 85.03
d2a1jb178 DNA excision repair protein ERCC-1 {Human (Homo sa 84.61
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 83.48
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 83.48
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 82.58
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 82.36
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 82.13
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 82.01
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 81.6
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 81.2
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 81.14
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 80.8
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Sec63 N-terminal domain-like
superfamily: Sec63 N-terminal domain-like
family: Sec63 N-terminal domain
domain: Protein pro2281
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=256.68  Aligned_cols=176  Identities=55%  Similarity=0.924  Sum_probs=170.9

Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf             76888999983840101599990169999999821684359999999388999999998629888863388599999999
Q 000849          954 TKMKGLLEVLASASEYAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHMEGNLKLDQEKVLLSA 1033 (1254)
Q Consensus       954 ~~~~~il~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~l~r~~l~~~l~~D~~~il~~~ 1033 (1254)
                      ++.+.+++++|.|.||+++++|++|+.++.++.+.+|++++.+.+++++.|+++|+|||++|.++|.+|..|+.+|++++
T Consensus         1 t~~k~lL~~ls~a~EF~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~~Llqa~l~r~~l~~sl~~D~~~I~~~~   80 (176)
T d2q0zx1           1 TKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKA   80 (176)
T ss_dssp             CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             95889999981868662288784589999999986898776666577789999999999848989889999999999989


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHH
Q ss_conf             99999999999714959999999999999972147999763457999999899988099997249889831999999988
Q 000849         1034 SRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRCQENPGRSIETVFDLLEMEDDERREL 1113 (1254)
Q Consensus      1034 ~rll~a~idi~~~~~~~~~~~~~~~l~q~i~q~~w~~~~~L~Qlp~i~~~~~~~l~~~~~~~i~~~~~l~~~~~~~~~~l 1113 (1254)
                      +||++||+|++..+||++++.++++|+|||+||+|++++||+||||++++.++++.+.|   +.++.++.++++++++.+
T Consensus        81 ~Rll~al~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~~~~~~~~kl~~~~---i~sl~~l~~~~~~e~~~l  157 (176)
T d2q0zx1          81 IRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKG---VESVFDIMEMEDEERNAL  157 (176)
T ss_dssp             HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTTCCHHHHHHHHHTT---CCSHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCC---CCCHHHHHHCCHHHHHHH
T ss_conf             99999999999877878999999999999998649999974397869999999998779---998999985999999999


Q ss_pred             HCCCHHHHHHHHHHHCCCC
Q ss_conf             2499266999999963399
Q 000849         1114 LQMSDVQLLDIARFCNRFP 1132 (1254)
Q Consensus      1114 l~~~~~~~~~i~~~~~~~P 1132 (1254)
                      +++++.++++|.++|+.||
T Consensus       158 l~~~~~~~~~i~~~~~~~P  176 (176)
T d2q0zx1         158 LQLTDSQIADVARFCNRYP  176 (176)
T ss_dssp             HCCCHHHHHHHHHHHTTSC
T ss_pred             HCCCHHHHHHHHHHHHHCC
T ss_conf             7699999999999997582
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure