Citrus Sinensis ID: 000863

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------125
MFSSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKMRLKHSISKPERMMADNAISAIPSSKVAANYQEVADDSTRDDGSVSLRLEHGGLESLSEQLNHSSVSSVPLFLDHRYGDGPTDACNDNLEHDVGLDFRSFNECEDLKVSIVNSFDALQQELQEIMGQEERQLGESHELMKFEGVNEDEVSGEYFSAADTNQSILVSFSSRCVLKGTVCERSRLLRIKFYGSFDKPLGRYLHGDLFNQTSCCRSCNESAEAHVLCYTHQQGNLTISVKCLSSVRLPGERDGKIWMWHRCLRCAHADGVPPATRRVVMSDAAWGLSFGKFLELSFSNHATANRIASCGHSLQRDCLRYYGFGSMIAIFRYSPIDILSVHLPPSVLEFNGLLQQEWIRKEAEELKVKMETLYAEISNVLEVMEQRSNSIGCEMSDSTDLKSHILELKVQLESERNDYIGLLQPVVMETSEPGQTAVDILELNRLRRALLIGSHAWDRQLYSLNSLLKKGSIAKAKQGNASYAQLKELRTDLFCKDSKLDHDNEENVSGSLDSLESPANDLHLQQKEELNLPTLEPFGSENSKLTSFLHNREEDVHSDGEITSTLSEKIDSAWTGTDQVVPLVSQTDRPQAGFVGQISKIDNSPFKRLASPVRVHSFDSALRFQERIARGLPHSLLHLSSIRSFHASGDYRSMVRDPVSNVMRTYSQILPLEAQKLNLILSSTPSFISSASRMVEGARLLLPQRGDNDVVIAVFDDDPTSIISYALSSKEYEDWVADKLYDNDGSWSAGEIHKEGSAVSSFSAWQSFGSLDLDYIHYGSYGSEDASSSVGTLFTDPKKSPHLTISFGDESSTAGGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVRSLLHFCLLCPCTHNMWWWVLG
cccccccccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccccccccEEEEEEEEEccccccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccEEEEEccHHHHHHHHHHHcccEEccccccccccccccccEEEEEEccccccccccccccccEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccEEEcccccccccccccccccccHHccccccccccccHHHHHccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHcccccccccccccccccccccEEEEEEEEEccccccccccccEEEEEEccccccccHHHHHHHcccccccccccHHHHHHcccEEEEccEEEEEEEEEcccccccccccccEEEEEccccccccccccccccEEEcccHHHcccHHHHHHHcccccccccccccccccccccccEEEccccEEEEEEEccccEEEEEccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccccccccEEEEEccccccEEEEccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccEEEEEEEEEcccHHHHHHHHccccHHHHHHHcccccccccccccccHHcccccccHHHHcccHHHHHHHHHHcHHHHHHHHHHccccccccEEEEEEEEEEEEccEEEEEccEEEHHHHHHcc
ccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEccccccccEEEEEEEEEcccccccccccccccEEEEEcccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHcccEEEEEccHHHHHHHHHHHcccEEccHHHccHHHcccccEEEEEEEccccccccccccccEEEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEccccccccccccccccccHHHHccccccccHccHHHHHHHHHHccHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHccccccccEcHHHHccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHcccccccHccccccccccccccEEEEEEEEEccccccEccccEEEEEEEcccccccHHHHHHHHHcccccccccccccHHHHHEEEEccccEEEEEEEEccccccccccccEEEEEEEcccccccccccccccEEEEccHHHcccHHHEEEEEEccHHHHHHHccccccccHHHHHEEccccEEEEEEEccEEEEEEEccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccHccHHHHHHHccccHHHHHHHcccccccHHHccccccccccccccHHHccccccccccccccccEEEEEccccccHHHHHHHccHHHHHHHHHHHcccccccccccccccccccccccHccccccccHHHcccccccccccccccccccccccccccEEEEEccccccccccEEEEEEEEEHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccEEEEcccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHEHHHHHHHHcccccccccHHHHcc
mfssssslssmfparekqnegnkeplRAVVQGHFRALVSELLRAEGiklgkedseeDWLGIITTIAWQAanfvkpdtsrggsmdpgdyvKVKCiakgspnestfikgvvctknikhkrmtsqyrnprlLILGGaleyqrvpnQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGalitpsidnisttrlghcelfklekvseehetsnqfnkkpsktlmyfegcprrlgcmvllRGKCREELKKVKHVVQYAVFAAYHLSLETSfladegatlpkmrlkhsiskpermmadnaisaipsskvaanyqevaddstrddgsvslrlehggleslseqlnhssvssvplfldhrygdgptdacndnlehdvgldfrsfnecedLKVSIVNSFDALQQELQEIMGQEerqlgeshelmkfegvnedevsgeyfsaadtnQSILVSFSsrcvlkgtvcerSRLLRIKFygsfdkplgrylhgdlfnqtsccrscnesAEAHVLCYTHQQGNLTISVKCLssvrlpgerdgkiWMWHRCLrcahadgvppatrrVVMSDAAWGLSFGKFLELsfsnhatanriaSCGHSLQRDclryygfgsmiaifryspidilsvhlppsvlefNGLLQQEWIRKEAEELKVKMETLYAEISNVLEVMEQRsnsigcemsdstdLKSHILELKVQLESERndyigllqpvvmetsepgqtavDILELNRLRRALLIGSHAWDRQLYSLNSLLKKGSIAKAKQGNASYAQLKELRTdlfckdskldhdneenvsgsldslespandlHLQQkeelnlptlepfgsenskltsflhnreedvhsdgeiTSTLSEKidsawtgtdqvvplvsqtdrpqagfvgqiskidnspfkrlaspvrvhsfDSALRFQERIARGLPHSLLHLSSirsfhasgdyrsmvrdpvsnVMRTYSQILPLEAQKLNLIlsstpsfissASRMVEGARlllpqrgdndvviavfdddptsIISYALSSKEYEDWVAdklydndgswsageihkegsavssFSAWqsfgsldldyihygsygsedasssvgtlftdpkksphltisfgdesstaggkvKFSVTSYFAKQFdslrkkccpsgvdFVRSLSRsrkwsaqggksnvfFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDslnsrsptcLAKILGIYQVRSLLHFcllcpcthnmwwwvlg
mfssssslssmfparekqnegnkeplRAVVQGHFRALVSELLRAEGIklgkedseeDWLGIITTIAWQAANFVKPdtsrggsmdpGDYVKVKCIakgspnestfikgvvctknikhkrmtsqyrnpRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTgalitpsidnisttrLGHCELFKLekvseehetsnqfnkkpsktlmyFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKMRLKHSISKPERMMADNAISAIPSSKVAANYQEVADDSTRDDGSVSLRLEHGGLESLSEQLNHSSVSSVPLFLDHRYGDGPTDACNDNLEHDVGLDFRSFNECEDLKVSIVNSFDALQQELQEIMGQEERQLGESHELMKFEGVNEDEVSGEYFSAADTNQSILVSFSSRCVLkgtvcersrllrIKFYGSFDKPLGRYLHGDLFNQTSCCRSCNESAEAHVLCYTHQQGNLTISVKCLSSVRLPGERDGKIWMWHRCLRCAHADGVPPATRRVVMSDAAWGLSFGKFLELSFSNHATANRIASCGHSLQRDCLRYYGFGSMIAIFRYSPIDILSVHLPPSVLEFNGLLQQEWIRKEAEELKVKMETLYAEISNVLEVMEQRSNSIGCEMSDSTDLKSHILELKVQLESERNDYIGLLQPVVMETSEPGQTAVDILELNRLRRALLIGSHAWDRQLYSLNSLLKKGSIAKAKQGNASYAQLKELRTDLFCKDSKLDHDNEENVSGSLDSLESPANDLHLQQKEELNLPTLEPFGSENSKLTSFLHNREEDVHSDGEITSTLSekidsawtgtdQVVPLVSQTDRPQAGfvgqiskidnspfkRLASPVRVHSFDSALRFQERIARGLPHSLLHLSSIRSFHASGDYRSMVRDPVSNVMRTYSQILPLEAQKLNLILSSTPSFISSASRMVEGARLLLPQRGDNDVVIAVFDDDPTSIISYALSSKEYEDWVADKLYDNDGSWSAGEIHKEGSAVSSFSAWQSFGSLDLDYIHYGSYGSEDASSSVGTLFTDPKKSPHLTisfgdesstaggkVKFSVTSYFAKqfdslrkkccpsGVDFVRSLsrsrkwsaqggksnvffakslderFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVRSLLHFCLLCPCTHNMWWWVLG
MFssssslssMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKMRLKHSISKPERMMADNAISAIPSSKVAANYQEVADDSTRDDGSVSLRLEHGGLESLSEQLNHSSVSSVPLFLDHRYGDGPTDACNDNLEHDVGLDFRSFNECEDLKVSIVNSFDALQQELQEIMGQEERQLGESHELMKFEGVNEDEVSGEYFSAADTNQSILVSFSSRCVLKGTVCERSRLLRIKFYGSFDKPLGRYLHGDLFNQTSCCRSCNESAEAHVLCYTHQQGNLTISVKCLSSVRLPGERDGKIWMWHRCLRCAHADGVPPATRRVVMSDAAWGLSFGKFLELSFSNHATANRIASCGHSLQRDCLRYYGFGSMIAIFRYSPIDILSVHLPPSVLEFNGLLQQEWIRKEAEELKVKMETLYAEISNVLEVMEQRSNSIGCEMSDSTDLKSHILELKVQLESERNDYIGLLQPVVMETSEPGQTAVDILELNRLRRALLIGSHAWDRQLYSLNSLLKKGSIAKAKQGNASYAQLKELRTDLFCKDSKLDHDNEENVSGSLDSLESPANDLHLQQKEELNLPTLEPFGSENSKLTSFLHNREEDVHSDGEITSTLSEKIDSAWTGTDQVVPLVSQTDRPQAGFVGQISKIDNSPFKRLASPVRVHSFDSALRFQERIARGLPHSLLHLSSIRSFHASGDYRSMVRDPVSNVMRTYSQILPLEAQKLNLILSSTPSFISSASRMVEGARLLLPQRGDNDVVIAVFDDDPTSIISYALSSKEYEDWVADKLYDNDGSWSAGEIHKEGSAVSSFSAWQSFGSLDLDYIHYGSYGSEDASSSVGTLFTDPKKSPHLTISFGDESSTAGGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVRSLLHFCLLCPCTHNMWWWVLG
***************************AVVQGHFRALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVK***********GDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLE******************TLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADE**************************************************************************VPLFLDHRYGDGPTDACNDNLEHDVGLDFRSFNECEDLKVSIVNSFDALQ*********************************EYFSAADTNQSILVSFSSRCVLKGTVCERSRLLRIKFYGSFDKPLGRYLHGDLFNQTSCCRSCNESAEAHVLCYTHQQGNLTISVKCLSSVRLPGERDGKIWMWHRCLRCAHADGVPPATRRVVMSDAAWGLSFGKFLELSFSNHATANRIASCGHSLQRDCLRYYGFGSMIAIFRYSPIDILSVHLPPSVLEFNGLLQQEWIRKEAEELKVKMETLYAEISNVLEVME*****************SHILELKVQLESERNDYIGLLQPVVMETSEPGQTAVDILELNRLRRALLIGSHAWDRQLYSLNSLLKKGSIAK******SYAQLKELRTDLFC*****************************************************************************AWTGTDQVVPLVS******AGFVGQISKIDNSPFKRLASPVRVHSFDSALRFQERIARGLPHSLLHLSSIRSFHASGDYRSMVRDPVSNVMRTYSQILPLEAQKLNLILSSTPSFISSASRMVEGARLLLPQRGDNDVVIAVFDDDPTSIISYALSSKEYEDWVADKLYDNDGSWSAGEIHKEGSAVSSFSAWQSFGSLDLDYIHYGSYG*********************************GKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVRSLLHFCLLCPCTHNMWWWVL*
***************************AVVQGHFRALVSELLRAEG**********DWLGIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV******FNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPK***************************A*N**EVA******D***SLRLEHGGLESLSEQL*****************************************************************************************GEYFSAADTNQSILVSFSSRCVLKGTVCERSRLLRIKFYGSFDKPLGRYLHGDLFNQTSCCRSCNESAEAHVLCYTHQQGNLTISV**************KIWMWHRCLRCAHADGVPPA**RVVMSDAAWGLSFGKFLELSFSNHATANRIASCGHSLQRDCLRYYGFGSMIAIFRYSPIDILSVHLPPSVLEFNGLLQQEWIRKEAEELKVKMETLYAEISNVLEVMEQRSNS*GC*****TDLKSHILELKVQLESERNDYIGLLQPV****SEPGQTAVDILELNRLRRALLIGSHAWDRQLY*********************************************************************************************************************************************************************************************************************************************LLLPQRGDNDVVIAVFDDDPTSIISYALSSKEY************************************************************************ISFGDESSTAGGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRK*****GKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVRSLLHFCLLCPCTHNMWWWVLG
**********************KEPLRAVVQGHFRALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKV**********NKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKMRLKHSISKPERMMADNAISAIPSSKVAANY***********GSVSLRLEHGGLESLSEQLNHSSVSSVPLFLDHRYGDGPTDACNDNLEHDVGLDFRSFNECEDLKVSIVNSFDALQQELQEIMGQEERQLGESHELMKFEGVNEDEVSGEYFSAADTNQSILVSFSSRCVLKGTVCERSRLLRIKFYGSFDKPLGRYLHGDLFNQTSCCRSCNESAEAHVLCYTHQQGNLTISVKCLSSVRLPGERDGKIWMWHRCLRCAHADGVPPATRRVVMSDAAWGLSFGKFLELSFSNHATANRIASCGHSLQRDCLRYYGFGSMIAIFRYSPIDILSVHLPPSVLEFNGLLQQEWIRKEAEELKVKMETLYAEISNVLEVMEQRSNSIGCEMSDSTDLKSHILELKVQLESERNDYIGLLQPVVMETSEPGQTAVDILELNRLRRALLIGSHAWDRQLYSLNSLLKKGSIAKAKQGNASYAQLKELRTDLFCKDSKLDHDNEENVSGSLDSLESPANDLHLQQKEELNLPTLEPFGSENSKLTSFLHNREEDVHSDGEITSTLSEKIDSAWTGTDQVVPLVSQTDRPQAGFVGQISKIDNSPFKRLASPVRVHSFDSALRFQERIARGLPHSLLHLSSIRSFHASGDYRSMVRDPVSNVMRTYSQILPLEAQKLNLILSSTPSFISSASRMVEGARLLLPQRGDNDVVIAVFDDDPTSIISYALSSKEYEDWVADKLYDNDGSWSAGEIHKEGSAVSSFSAWQSFGSLDLDYIHYGSYG********GTLFTDPKKSPHLTISFGDESSTAGGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSL*********GGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVRSLLHFCLLCPCTHNMWWWVLG
****SSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKMRLKHSISKPERMMADNAISAIPSSKVAANYQEVADDSTRDDGSVSLRLEHGGLESLSEQ**HSSVSSVPLFLDHRYGDGPTDACNDNLEHDVGLDFRSFNECEDLKVSIVNSFDALQQE********************************YFSAADTNQSILVSFSSRCVLKGTVCERSRLLRIKFYGSFDKPLGRYLHGDLFNQTSCCRSCNESAEAHVLCYTHQQGNLTISVKCLSSVRLPGERDGKIWMWHRCLRCAHADGVPPATRRVVMSDAAWGLSFGKFLELSFSNHATANRIASCGHSLQRDCLRYYGFGSMIAIFRYSPIDILSVHLPPSVLEFNGLLQQEWIRKEAEELKVKMETLYAEISNVLEVMEQRSNSIGCEMSDSTDLKSHILELKVQLESERNDYIGLLQPVVMETSEPGQTAVDILELNRLRRALLIGSHAWDRQLYSLNSLLKK****************************************************************************************************************************************************************GLP*****LS*I***HASGDYRSMVRDPVSNVMRTYSQILPLEAQKLNLILSSTPSFISSASRMVEGARLLLPQRGDNDVVIAVFDDDPTSIISYALSSKEYEDWVADKL**********************************************************KSPHLTISFGDESSTAGGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVRSLLHFCLLCPCTHNMWWWVLG
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFSSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKMRLKHSISKPERMMADNAISAIPSSKVAANYQEVADDSTRDDGSVSLRLEHGGLESLSEQLNHSSVSSVPLFLDHRYGDGPTDACNDNLEHDVGLDFRSFNECEDLKVSIVNSFDALQQELQEIMGQEERQLGESHELMKFEGVNEDEVSGEYFSAADTNQSILVSFSSRCVLKGTVCERSRLLRIKFYGSFDKPLGRYLHGDLFNQTSCCRSCNESAEAHVLCYTHQQGNLTISVKCLSSVRLPGERDGKIWMWHRCLRCAHADGVPPATRRVVMSDAAWGLSFGKFLELSFSNHATANRIASCGHSLQRDCLRYYGFGSMIAIFRYSPIDILSVHLPPSVLEFNGLLQQEWIRKEAEELKVKMETLYAEISNVLEVMEQRSNSIGCEMSDSTDLKSHILELKVQLESERNDYIGLLQPVVMETSEPGQTAVDILELNRLRRALLIGSHAWDRQLYSLNSLLKKGSIAKAKQGNASYAQLKELRTDLFCKDSKLDHDNEENVSGSLDSLESPANDLHLQQKEELNLPTLEPFGSENSKLTSFLHNREEDVHSDGEITSTLSEKIDSAWTGTDQVVPLVSQTDRPQAGFVGQISKIDNSPFKRLASPVRVHSFDSALRFQERIARGLPHSLLHLSSIRSFHASGDYRSMVRDPVSNVMRTYSQILPLEAQKLNLILSSTPSFISSASRMVEGARLLLPQRGDNDVVIAVFDDDPTSIISYALSSKEYEDWVADKLYDNDGSWSAGEIHKEGSAVSSFSAWQSFGSLDLDYIHYGSYGSEDASSSVGTLFTDPKKSPHLTISFGDESSTAGGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVRSLLHFCLLCPCTHNMWWWVLG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1247 2.2.26 [Sep-21-2011]
Q9Z1T6 2097 1-phosphatidylinositol 3- yes no 0.220 0.131 0.372 3e-46
Q9Y2I7 2098 1-phosphatidylinositol 3- yes no 0.198 0.118 0.389 7e-45
B0G126 2656 1-phosphatidylinositol 3- yes no 0.230 0.108 0.332 3e-42
O96838 1809 Putative 1-phosphatidylin yes no 0.205 0.141 0.339 4e-38
P34756 2278 1-phosphatidylinositol 3- yes no 0.167 0.091 0.369 6e-35
O59722 1932 1-phosphatidylinositol 3- yes no 0.213 0.137 0.298 6e-30
P39077534 T-complex protein 1 subun no no 0.214 0.5 0.272 1e-22
Q5NVF9545 T-complex protein 1 subun no no 0.230 0.526 0.243 1e-21
P49368545 T-complex protein 1 subun no no 0.230 0.526 0.243 1e-21
Q54TH8530 T-complex protein 1 subun no no 0.201 0.473 0.267 2e-21
>sp|Q9Z1T6|FYV1_MOUSE 1-phosphatidylinositol 3-phosphate 5-kinase OS=Mus musculus GN=Pikfyve PE=1 SV=3 Back     alignment and function desciption
 Score =  188 bits (477), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 109/293 (37%), Positives = 161/293 (54%), Gaps = 18/293 (6%)

Query: 24  EPLRAVVQGHFRALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTS-RGGS 82
           E L +    H  AL+ +LL+ E +          W  II ++  Q    V+PD   +   
Sbjct: 606 ERLLSANHNHMMALLQQLLQNESLS-------SSWRDIIVSLVCQVVQTVRPDVKHQDDD 658

Query: 83  MDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEY-QRVP 141
           MD   +V +K I  G   +S  + G VCTKNI HK+M S  +NP++L+L  ++EY  R  
Sbjct: 659 MDIRQFVHIKKIPGGKKFDSVVVNGFVCTKNIAHKKMNSCIKNPKILLLKCSIEYLYREE 718

Query: 142 NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRP 201
            +    + ++ QE + LK  + +I  +RP ++LVEK+VS  AQD+LL   I+LV+NVK  
Sbjct: 719 TKFTCIDPIVLQEREFLKNYVQRIVDVRPTLVLVEKTVSRIAQDMLLEHGITLVINVKSQ 778

Query: 202 LLERIARCTGALITPSIDNIST-TRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEG 260
           +LERI+R T   +  S+D + T   LG C  F ++          Q   + +KTLM+FEG
Sbjct: 779 VLERISRMTQGDLVVSMDQLLTKPHLGTCHKFYMQIF--------QLPNEQTKTLMFFEG 830

Query: 261 CPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313
           CP+ LGC + LRG    EL +VK ++ + +  AYH  LE SFL DE A  P +
Sbjct: 831 CPQHLGCTIKLRGGSDYELARVKEILIFMICVAYHSQLEISFLMDEFAMPPTL 883
The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Catalyzes the phosphorylation of phosphatidylinositol 3-phosphate on the fifth hydroxyl of the myo-inositol ring, to form phosphatidylinositol 3,5-bisphosphate. Required for endocytic-vacuolar pathway and nuclear migration. The product of the reaction it catalyzes functions as an important regulator of vacuole homeostasis perhaps by controlling membrane flux to and/or from the vacuole.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 5EC: 0
>sp|Q9Y2I7|FYV1_HUMAN 1-phosphatidylinositol 3-phosphate 5-kinase OS=Homo sapiens GN=PIKFYVE PE=1 SV=3 Back     alignment and function description
>sp|B0G126|FYV1_DICDI 1-phosphatidylinositol 3-phosphate 5-kinase OS=Dictyostelium discoideum GN=pip5k3 PE=3 SV=1 Back     alignment and function description
>sp|O96838|FYV1_DROME Putative 1-phosphatidylinositol 3-phosphate 5-kinase OS=Drosophila melanogaster GN=fab1 PE=1 SV=2 Back     alignment and function description
>sp|P34756|FAB1_YEAST 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAB1 PE=1 SV=3 Back     alignment and function description
>sp|O59722|FAB1_SCHPO 1-phosphatidylinositol 3-phosphate 5-kinase fab1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fab1 PE=3 SV=2 Back     alignment and function description
>sp|P39077|TCPG_YEAST T-complex protein 1 subunit gamma OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCT3 PE=1 SV=2 Back     alignment and function description
>sp|Q5NVF9|TCPG_PONAB T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1 Back     alignment and function description
>sp|P49368|TCPG_HUMAN T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4 Back     alignment and function description
>sp|Q54TH8|TCPG_DICDI T-complex protein 1 subunit gamma OS=Dictyostelium discoideum GN=cct3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1247
255570092 1651 fyve finger-containing phosphoinositide 0.968 0.731 0.699 0.0
359472635 1711 PREDICTED: LOW QUALITY PROTEIN: 1-phosph 0.977 0.712 0.693 0.0
224101819 1725 predicted protein [Populus trichocarpa] 0.952 0.688 0.689 0.0
224108341 1739 predicted protein [Populus trichocarpa] 0.935 0.670 0.673 0.0
297838923 1653 predicted protein [Arabidopsis lyrata su 0.925 0.698 0.585 0.0
42563125 1648 1-phosphatidylinositol-4-phosphate 5-kin 0.923 0.698 0.579 0.0
297737713 1491 unnamed protein product [Vitis vinifera] 0.821 0.687 0.575 0.0
242081509 1626 hypothetical protein SORBIDRAFT_07g02093 0.943 0.723 0.479 0.0
218201185 1553 hypothetical protein OsI_29312 [Oryza sa 0.930 0.746 0.497 0.0
115476510 1630 Os08g0428900 [Oryza sativa Japonica Grou 0.929 0.711 0.496 0.0
>gi|255570092|ref|XP_002526008.1| fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis] gi|223534655|gb|EEF36348.1| fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1723 bits (4463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 873/1248 (69%), Positives = 1010/1248 (80%), Gaps = 40/1248 (3%)

Query: 1    MFSSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDSEEDWLG 60
             FS +SSLS +FP+++K NEGNKEPLRAV+ GHFRALVS+LL+ E IK+ KED  EDWL 
Sbjct: 269  FFSYTSSLSGLFPSKDKHNEGNKEPLRAVIHGHFRALVSQLLQGENIKICKEDGGEDWLD 328

Query: 61   IITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMT 120
            IIT IAWQAA+FVKPDTSRGGSMDPGDYVKVKCIA G+P++ST +KGVVCTKNIKHKRMT
Sbjct: 329  IITAIAWQAASFVKPDTSRGGSMDPGDYVKVKCIASGTPSDSTLVKGVVCTKNIKHKRMT 388

Query: 121  SQYRNPRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVS 180
            +QY+NPRLL+LGGALEYQ V NQLASFNTL+QQENDH+KM++SKIEALRPNV+LVEKSVS
Sbjct: 389  TQYKNPRLLLLGGALEYQSVVNQLASFNTLVQQENDHIKMIMSKIEALRPNVVLVEKSVS 448

Query: 181  SYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEE 240
             YAQ+ LLAKEISLVLNVK+PLLERIARCTGA I+ SID IST RLGHCELF++E+VSE+
Sbjct: 449  PYAQEYLLAKEISLVLNVKKPLLERIARCTGAFISASIDRISTARLGHCELFRVERVSEQ 508

Query: 241  HETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLET 300
            HET+NQFNKKPSKTLM+FEGCPRRLGC VLLRG  REELKKVKHVVQYAVFAAYHLSLET
Sbjct: 509  HETANQFNKKPSKTLMFFEGCPRRLGCTVLLRGTSREELKKVKHVVQYAVFAAYHLSLET 568

Query: 301  SFLADEGATLPKMRLKHSISKPERMMADNAISAIPSSKVAANYQEVADDSTRDDGSVSLR 360
            SFLADEGA+LPK  LKHSI+ PER  ADNAIS IP +    N   +AD ST+D+  V L+
Sbjct: 569  SFLADEGASLPKTTLKHSIAIPERATADNAISLIPPT----NCHAIADASTQDEEPVDLK 624

Query: 361  LEHGGLESLSEQLNHSSVSSVPLF---LDHRYGDGPTDACNDNLEHDVGLDFRSFNECED 417
             EH G +S S      +VS  PLF   +D    +   +A +D+L  +VG D  + N+ ED
Sbjct: 625  SEHVGSKSFS------NVS--PLFPGSMD--LANTCYNAFHDDLVSNVGYDLFTTNQSED 674

Query: 418  LKVSIVNSFDA--LQQELQEIMGQEERQLGESHELMKFEGVNEDEVSGEYFSAADTNQSI 475
              + +V         ++LQ+++ QEER+L E+HE  K E ++EDEVS +YFSA DT+QSI
Sbjct: 675  QNLPMVPPVTKGLAAEDLQDVIAQEERRLREAHESSKSERIDEDEVSSDYFSATDTHQSI 734

Query: 476  LVSFSSRCVLKGTVCERSRLLRIKFYGSFDKPLGRYLHGDLFNQTSCCRSCNESAEAHVL 535
            LVSFSSRCVLKGTVCERSRLLRIKFYGSFDKPLGRYL  DLF+QTS CRSC E AEAHVL
Sbjct: 735  LVSFSSRCVLKGTVCERSRLLRIKFYGSFDKPLGRYLRDDLFDQTSYCRSCKEPAEAHVL 794

Query: 536  CYTHQQGNLTISVKCLSSVRLPGERDGKIWMWHRCLRCAHADGVPPATRRVVMSDAAWGL 595
            CYTHQQGNLTI+V+ LSS++LPGERDGKIWMWHRCLRCAH DGVPPATRRVVMSDAAWGL
Sbjct: 795  CYTHQQGNLTINVRSLSSLKLPGERDGKIWMWHRCLRCAHIDGVPPATRRVVMSDAAWGL 854

Query: 596  SFGKFLELSFSNHATANRIASCGHSLQRDCLRYYGFGSMIAIFRYSPIDILSVHLPPSVL 655
            SFGKFLELSFSNHATANR+A CGHSLQRDCLR+YGFGSM+A FRYSPIDIL+V+LPP VL
Sbjct: 855  SFGKFLELSFSNHATANRVAPCGHSLQRDCLRFYGFGSMVAFFRYSPIDILNVYLPPPVL 914

Query: 656  EFNGLLQQEWIRKEAEELKVKMETLYAEISNVLEVMEQRSNSIGCEMSDSTDLKSHILEL 715
            EFNG +QQEWI+KEA EL   ME  YAEIS+VL+ MEQ+S S G E+SD  +L++HI+EL
Sbjct: 915  EFNGHIQQEWIKKEAAELLGNMEAFYAEISDVLDGMEQKSKSFGNELSDLNELQNHIVEL 974

Query: 716  KVQLESERNDYIGLLQPVVMETSEPGQTAVDILELNRLRRALLIGSHAWDRQLYSLNSLL 775
            K QL  ERN Y G+LQ  +  +S+ GQT +DILELN LRRALL+GSH WDRQLYSL+SLL
Sbjct: 975  KDQLRKERNHYKGILQVYIGGSSQLGQTPLDILELNSLRRALLVGSHVWDRQLYSLDSLL 1034

Query: 776  KKGSIAKAKQGNASYAQLKELRTDLFCKDSKLDHDNEENVSGSLDSLESPANDLHLQQKE 835
            K  S+ KA  G+AS A+LKELR+D  CKD K ++ + EN  G     +   N L L+Q +
Sbjct: 1035 KTNSVIKAIHGDASNARLKELRSDT-CKDCKPENGHVENACGYAKQEDPVGNGLLLEQNK 1093

Query: 836  ELNLPTLEPFGSENSKLTSFLHNREEDVHSDGEIT-------------STLSEKIDSAWT 882
              N  + E + +E+S  T   HNREE+ HSDGEIT             STLSE+IDSAWT
Sbjct: 1094 --NSLSFEQYIAEDSMSTLHHHNREEEAHSDGEITVNRTCFDDIPSKASTLSERIDSAWT 1151

Query: 883  GTDQVV-----PLVSQTDRPQAGFVGQISKIDNSPFKRLASPVRVHSFDSALRFQERIAR 937
            GTDQ++     P VSQ D  Q G V Q+S  DN P K++ +PVRV+SFDSALR QERI +
Sbjct: 1152 GTDQLLNKIQPPSVSQIDGFQVGPVKQMSICDNHPLKKMLAPVRVNSFDSALRIQERIRK 1211

Query: 938  GLPHSLLHLSSIRSFHASGDYRSMVRDPVSNVMRTYSQILPLEAQKLNLILSSTPSFISS 997
            GLP S L+LS+++SFHASGDYRSMVRDPV N MR  SQ LP EAQKLNL+ SS+ SFISS
Sbjct: 1212 GLPPSSLYLSTLKSFHASGDYRSMVRDPVLNAMRACSQTLPPEAQKLNLLPSSSSSFISS 1271

Query: 998  ASRMVEGARLLLPQRGDNDVVIAVFDDDPTSIISYALSSKEYEDWVADKLYDNDGSWSAG 1057
            AS M  GARLLLP RG ND+ I V+D+DP SI+SYALSSKEY+DWVADK  +N GSW   
Sbjct: 1272 ASHMTGGARLLLPPRGQNDIAIGVYDNDPASIVSYALSSKEYDDWVADKSNENQGSWGMN 1331

Query: 1058 EIHKEGSAVSSFSAWQSFGSLDLDYIHYGSYGSEDASSSVGTLFTDPKKSPHLTISFGDE 1117
            E +KE SA S+ S WQSFGSLD+DYI YGSYGSED SSS+GTLF D K+SPHL ISFGD+
Sbjct: 1332 EHYKEESATSTLSTWQSFGSLDMDYIRYGSYGSEDPSSSIGTLFMDSKRSPHLAISFGDD 1391

Query: 1118 SSTAGGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQGGKSNVFFAKSLD 1177
            SSTA GKVKFSVT YFAKQFDSLRKKCCP+ VDFVRSLSR ++WSAQGGKSNV+FAKSLD
Sbjct: 1392 SSTAAGKVKFSVTCYFAKQFDSLRKKCCPNEVDFVRSLSRCQRWSAQGGKSNVYFAKSLD 1451

Query: 1178 ERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQV 1225
            ERFIIKQVKKTEL+SFEEFA EYFKYLTDSL+SRSPTCLAK+LGIYQV
Sbjct: 1452 ERFIIKQVKKTELDSFEEFASEYFKYLTDSLSSRSPTCLAKVLGIYQV 1499

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359472635|ref|XP_003631178.1| PREDICTED: LOW QUALITY PROTEIN: 1-phosphatidylinositol-3-phosphate 5-kinase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224101819|ref|XP_002312432.1| predicted protein [Populus trichocarpa] gi|222852252|gb|EEE89799.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108341|ref|XP_002314813.1| predicted protein [Populus trichocarpa] gi|222863853|gb|EEF00984.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297838923|ref|XP_002887343.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297333184|gb|EFH63602.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42563125|ref|NP_177257.3| 1-phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana] gi|5902400|gb|AAD55502.1|AC008148_12 Unknown protein [Arabidopsis thaliana] gi|332197029|gb|AEE35150.1| 1-phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297737713|emb|CBI26914.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|242081509|ref|XP_002445523.1| hypothetical protein SORBIDRAFT_07g020930 [Sorghum bicolor] gi|241941873|gb|EES15018.1| hypothetical protein SORBIDRAFT_07g020930 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|218201185|gb|EEC83612.1| hypothetical protein OsI_29312 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|115476510|ref|NP_001061851.1| Os08g0428900 [Oryza sativa Japonica Group] gi|25553693|dbj|BAC24937.1| FYVE finger-containing phosphoinositide kinase-like [Oryza sativa Japonica Group] gi|113623820|dbj|BAF23765.1| Os08g0428900 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1247
TAIR|locus:20139651648 FAB1C "FORMS APLOID AND BINUCL 0.627 0.474 0.607 0.0
TAIR|locus:2091050 1791 FAB1B "FORMS APLOID AND BINUCL 0.577 0.402 0.427 2.7e-246
TAIR|locus:2125884 1757 FAB1A "FORMS APLOID AND BINUCL 0.935 0.663 0.443 3.5e-242
TAIR|locus:20261091456 FAB1D "FORMS APLOID AND BINUCL 0.624 0.535 0.340 7.9e-148
ZFIN|ZDB-GENE-030131-9636 2100 pikfyve "phosphoinositide kina 0.331 0.196 0.327 6.9e-84
UNIPROTKB|Q9Y2I7 2098 PIKFYVE "1-phosphatidylinosito 0.227 0.135 0.366 2.3e-82
UNIPROTKB|F1PXC7 2100 PIKFYVE "Uncharacterized prote 0.227 0.135 0.376 9.3e-82
UNIPROTKB|F1N2K7 2102 PIKFYVE "Uncharacterized prote 0.352 0.209 0.315 9.9e-82
UNIPROTKB|F1SST9 2105 PIKFYVE "Uncharacterized prote 0.227 0.134 0.372 3.1e-81
MGI|MGI:1335106 2097 Pikfyve "phosphoinositide kina 0.347 0.206 0.303 3.2e-81
TAIR|locus:2013965 FAB1C "FORMS APLOID AND BINUCLEATE CELLS 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2444 (865.4 bits), Expect = 0., Sum P(2) = 0.
 Identities = 485/798 (60%), Positives = 593/798 (74%)

Query:     2 FXXXXXXXXMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDSEEDWLGI 61
             F          P +EK  E + EPLR VV  HFRALV+ELLR E +    + S  +WL I
Sbjct:   297 FSLSSSFSSHIPTKEKLGENSNEPLRTVVHDHFRALVAELLRGEELSPSDDGSAGEWLDI 356

Query:    62 ITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTS 121
             +T +AWQAANFVKPDT  GGSMDPG+YVK+KC+A G+ NES  I+G+VC+KNI HKRM S
Sbjct:   357 VTALAWQAANFVKPDTRAGGSMDPGNYVKIKCVASGNQNESILIRGIVCSKNITHKRMIS 416

Query:   122 QYRNPRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSS 181
             QY+NPR+++L G+LEYQRV  QLASFNTLLQQEN+H+K +I+KIE+LRPNVLLVEKS SS
Sbjct:   417 QYKNPRVMLLAGSLEYQRVAGQLASFNTLLQQENEHMKAIIAKIESLRPNVLLVEKSASS 476

Query:   182 YAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEH 241
             YAQ  LL KEISLVLNVKR LL+RIARCTGA++ PS+D+IST RLGHCELF+ E+V E+H
Sbjct:   477 YAQQYLLEKEISLVLNVKRSLLDRIARCTGAVLCPSLDSISTARLGHCELFRTERVLEQH 536

Query:   242 ETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETS 301
             E  NQ N+KPS+TLMYFEGCPRRLGC V+LRG CREELKKVKHV+QYAVFAAYHLSLETS
Sbjct:   537 EAGNQSNRKPSRTLMYFEGCPRRLGCTVVLRGSCREELKKVKHVIQYAVFAAYHLSLETS 596

Query:   302 FLADEGATLPKMRLKHS---ISKPERMMADNAISAIPSSKVAANYQEVADDSTRDDGSVS 358
             FLADEGA+LPK+RLK      +  +R + D  IS I  S    + Q + + +  +D   +
Sbjct:   597 FLADEGASLPKIRLKQPGMVRTASQRRIIDEGISLITQSPTETDSQALLETAAHEDEHTA 656

Query:   359 LRLEHGGLESLSEQLNHSSVSSVPLFLDHRYGDGPTDACNDNLEHDVGLDFRSFNECEDL 418
                EH   ESL E  + + +      ++       +D  N +  +++     S N+  DL
Sbjct:   657 PMPEHEVCESLCEDFDPTQIFPPSSEVETEQ----SDTLNGDFANNLVTRSYSSNQLNDL 712

Query:   419 -KVSIVNSFDALQQELQEIMGQE-------ERQLGESHELMKFEGVNEDEVSGEYFSAAD 470
              + ++  S +  +   Q+  G+E       E QL    +L + E   ED+VS EYFSAAD
Sbjct:   713 HEPTLCLSSEIPETPTQQPSGEEDNGRGEEENQLVNPQDLPQHESFYEDDVSSEYFSAAD 772

Query:   471 TNQSILVSFSSRCVLKGTVCERSRLLRIKFYGSFDKPLGRYLHGDLFNQTSCCRSCNESA 530
             ++QSILVSFSSRCVLK +VCERSRLLRIKFYGSFDKPLGRYL  DLF++TS CRSC E  
Sbjct:   773 SHQSILVSFSSRCVLKESVCERSRLLRIKFYGSFDKPLGRYLKDDLFDKTSSCRSCKELV 832

Query:   531 EAHVLCYTHQQGNLTISVKCLSSVRLPGERDGKIWMWHRCLRCAHADGVPPATRRVVMSD 590
             +AHVLCY+HQ GNLTI+V+ L S++LPGE+DGKIWMWHRCLRCAH DGVPPATRRVVMSD
Sbjct:   833 DAHVLCYSHQNGNLTINVRRLPSMKLPGEQDGKIWMWHRCLRCAHVDGVPPATRRVVMSD 892

Query:   591 AAWGLSFGKFLELSFSNHATANRIASCGHSLQRDCLRYYGFGSMIAIFRYSPIDILSVHL 650
             AAWGLSFGKFLELSFSNHATANR+ASCGHSLQRDCLR+YGFG+M+A FRYSPI+IL+V L
Sbjct:   893 AAWGLSFGKFLELSFSNHATANRVASCGHSLQRDCLRFYGFGNMVAFFRYSPINILTVLL 952

Query:   651 PPSVLEFNGLLQQEWIRKEAEELKVKMETLYAEISNVLEVMEQRSNSIGCEMSDSTDLKS 710
             PPS+LEFN   QQEWIR EA EL  KM T+Y EIS++L  ME++S+ +  E S++ DL S
Sbjct:   953 PPSMLEFNSHPQQEWIRTEAAELVGKMRTMYTEISDMLNRMEEKSSLLEPEQSEACDLHS 1012

Query:   711 HILELKVQLESERNDYIGLLQPVVMETSEPGQTAVDILELNRLRRALLIGSHAWDRQLYS 770
              I+ L  QL  E+++Y   LQP+  E  +  Q ++DILELNRLRRAL+IG+HAWD QLY 
Sbjct:  1013 RIIGLIDQLVKEKDEYDDALQPIFEENLQI-QGSLDILELNRLRRALMIGAHAWDHQLYL 1071

Query:   771 LNSLLKKGSIAKAKQGNA 788
             LNS LKK S+ K    NA
Sbjct:  1072 LNSQLKKASVFKTGDDNA 1089
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0016307 "phosphatidylinositol phosphate kinase activity" evidence=IEA
GO:0016308 "1-phosphatidylinositol-4-phosphate 5-kinase activity" evidence=ISS
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0046488 "phosphatidylinositol metabolic process" evidence=IEA
TAIR|locus:2091050 FAB1B "FORMS APLOID AND BINUCLEATE CELLS 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125884 FAB1A "FORMS APLOID AND BINUCLEATE CELLS 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026109 FAB1D "FORMS APLOID AND BINUCLEATE CELLS 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9636 pikfyve "phosphoinositide kinase, FYVE finger containing" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y2I7 PIKFYVE "1-phosphatidylinositol 3-phosphate 5-kinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PXC7 PIKFYVE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1N2K7 PIKFYVE "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SST9 PIKFYVE "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1335106 Pikfyve "phosphoinositide kinase, FYVE finger containing" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VIII001149
hypothetical protein (1725 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1247
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 1e-131
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 1e-47
cd00139 313 cd00139, PIPKc, Phosphatidylinositol phosphate kin 3e-33
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 3e-29
smart00330 342 smart00330, PIPKc, Phosphatidylinositol phosphate 1e-25
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-24
cd03343517 cd03343, cpn60, cpn60 chaperonin family 1e-18
pfam01504 255 pfam01504, PIP5K, Phosphatidylinositol-4-phosphate 6e-18
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 8e-18
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 5e-17
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 2e-16
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 3e-16
COG5253 612 COG5253, MSS4, Phosphatidylinositol-4-phosphate 5- 1e-13
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 3e-10
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 2e-09
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 7e-09
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 2e-08
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 6e-08
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 7e-08
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 6e-07
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 5e-06
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 6e-06
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 4e-05
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 1e-04
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 2e-04
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 9e-04
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information 
 Score =  401 bits (1032), Expect = e-131
 Identities = 150/274 (54%), Positives = 195/274 (71%), Gaps = 14/274 (5%)

Query: 35  RALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCI 94
           RAL+++LL+ EGI      ++E WL I+  + W+AA+ VKPD   G  MD   YVK+K I
Sbjct: 1   RALLAQLLKDEGIS-----NDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKI 55

Query: 95  AKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQE 154
             GSP++S  + GVV TKN+ HKRM S+ +NPR+L+L G LEYQRV N+L S + ++ QE
Sbjct: 56  PGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQE 115

Query: 155 NDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALI 214
            ++LK ++S+I ALRP+V+LVEKSVS  AQDLLL   I+LVLNVK  +LERI+RCTGA I
Sbjct: 116 KEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERISRCTGADI 175

Query: 215 TPSID-NISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRG 273
             S+D  +++ +LG CE F++    EEH          SKTLM+FEGCP+ LGC +LLRG
Sbjct: 176 ISSMDDLLTSPKLGTCESFRVRTYVEEH--------GRSKTLMFFEGCPKELGCTILLRG 227

Query: 274 KCREELKKVKHVVQYAVFAAYHLSLETSFLADEG 307
              EELKKVK VV++ VFAAYHL LETSFLADE 
Sbjct: 228 GDLEELKKVKRVVEFMVFAAYHLKLETSFLADEF 261

Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins. Length = 261
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|238081 cd00139, PIPKc, Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|214623 smart00330, PIPKc, Phosphatidylinositol phosphate kinases Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|216538 pfam01504, PIP5K, Phosphatidylinositol-4-phosphate 5-Kinase Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227578 COG5253, MSS4, Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1247
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 99.97
PRK00013542 groEL chaperonin GroEL; Reviewed 99.97
PRK12851541 groEL chaperonin GroEL; Reviewed 99.97
PTZ00114555 Heat shock protein 60; Provisional 99.97
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 99.97
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 99.97
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 99.96
PRK12850544 groEL chaperonin GroEL; Reviewed 99.96
PRK12852545 groEL chaperonin GroEL; Reviewed 99.96
CHL00093529 groEL chaperonin GroEL 99.96
PLN03167600 Chaperonin-60 beta subunit; Provisional 99.95
PRK14104546 chaperonin GroEL; Provisional 99.95
COG5253 612 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Si 99.94
smart00330 342 PIPKc Phosphatidylinositol phosphate kinases. 99.93
cd00139 313 PIPKc Phosphatidylinositol phosphate kinases (PIPK 99.93
KOG0229 420 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.9
PLN03185 765 phosphatidylinositol phosphate kinase; Provisional 99.9
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 99.89
PF01504 252 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; 99.69
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 98.26
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 95.23
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=8e-176  Score=1612.77  Aligned_cols=1104  Identities=47%  Similarity=0.724  Sum_probs=816.7

Q ss_pred             cceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcCccCCChhhHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 000863            4 SSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGSM   83 (1247)
Q Consensus         4 ~~~~lagell~~a~~l~~~~~~~~~i~~gh~~al~~qLl~~~~i~~~~k~~~~~w~~~l~~l~~~A~~~V~~d~~~~~~~   83 (1247)
                      +..+-+.+...+.....+....|+.+..+|+++++.||++.+.+++..+....+|.++++.|+|+|+++++|+.+.++.|
T Consensus       279 s~s~s~~~~~~~~~~~ee~~~~m~~~~~~~fr~~~a~Llr~~~ls~~~d~~~~~W~~ii~~L~~eaa~~~kp~~~~~~~m  358 (1598)
T KOG0230|consen  279 SNSFSAPEYKSKDKSAEEDEKVMRNVVESHFRALVAQLLRSENLSVVMDGAHQEWLDIITSLCWEAANLLKPDTDSGGLM  358 (1598)
T ss_pred             cCccCCCCccccccchhhcchhhhccccchHHHHHHHHhcccCcCccccchhhhHHHHHHHHHHHHHHhcCcCcccCCCc
Confidence            44444555555566667777899999999999999999999999998887778999999999999999999999999999


Q ss_pred             CccCceEEEEccCCCCCcceeEeeEEEeeccCCCCCceeecCCcEEEeecccccccCcCCHHHHHHHHHHHHHHHHHHHH
Q 000863           84 DPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVIS  163 (1247)
Q Consensus        84 Di~~yVkIkkI~GG~~~dS~lI~GvV~~Kn~ahk~M~~~i~nprIlLl~~~Ley~r~~~~~~sle~ii~qE~e~L~~~V~  163 (1247)
                      ||++|||||||+||++.||++|+||||.|+++||+|++++++|||+|+.|+|||+|..+++.|++++++||++||+++|+
T Consensus       359 d~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~va  438 (1598)
T KOG0230|consen  359 DPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVA  438 (1598)
T ss_pred             CcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCEEEecCCCCHHHHHHHHHcCceeEecCChHHHHHHHHHhCCeEccCCCCCCCCCceeeeEEEEEEecccccc
Q 000863          164 KIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHET  243 (1247)
Q Consensus       164 rI~~~~pnVVLvek~Vs~~Al~~L~~~gI~vv~~Vk~~~LeRIar~TGA~Iissid~L~~~~LG~C~~f~v~~~~~e~~~  243 (1247)
                      ||.+.+||||||+|+|+++|+++|.+.||+++.|||+..|+||||||||+|++++|.++.++||+|+.|+++++.++|  
T Consensus       439 rI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~h--  516 (1598)
T KOG0230|consen  439 RIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEH--  516 (1598)
T ss_pred             HHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcc--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999864  


Q ss_pred             ccccCCCCcceEEEEEcCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEeeCCCcccccccccCC-CCcc
Q 000863          244 SNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKMRLKHS-ISKP  322 (1247)
Q Consensus       244 ~~~~~~~~~Ktl~~fegc~~~~gcTIlLRG~s~~~L~evKr~l~dal~~~~~l~lE~~~l~ggGa~e~~~~~~~~-~~~~  322 (1247)
                            +..||||||+||++++||||+|||++.++|++||+|++++++++||+.+|++|++|.|+.+.......+ ...+
T Consensus       517 ------k~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~~~~~~~~~~~~~  590 (1598)
T KOG0230|consen  517 ------KPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASISSPKLSIPTSVET  590 (1598)
T ss_pred             ------cchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccccccccceecc
Confidence                  467999999999999999999999999999999999999999999999999999999999875444333 1111


Q ss_pred             cccccccccccCCCccccccccccccCCCCCCCccccccccCcccchhhhccCCCccccccccCC--c----CCCCCCcc
Q 000863          323 ERMMADNAISAIPSSKVAANYQEVADDSTRDDGSVSLRLEHGGLESLSEQLNHSSVSSVPLFLDH--R----YGDGPTDA  396 (1247)
Q Consensus       323 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~--~----~~~~~~~~  396 (1247)
                      .  ...++++++|+++..+.+.+.......+..+.+.....+.+       +.+|...++++...  +    +... ...
T Consensus       591 ~--~~~~~~s~~~~~t~st~~~a~~~~~~~e~~~~~~~~~~~~l-------s~sp~~~~~~~~~~i~P~~~~~e~~-~~~  660 (1598)
T KOG0230|consen  591 S--IINRSISTSPGETDSTAEKAPVEALQVEPNRFNGALSSELL-------SSSPFLEFPLDLLEIAPGELVIETR-LSS  660 (1598)
T ss_pred             c--ccccccccCCCCCcchhcccchhhhccchhhhhccccccee-------ecccccccCCCccccCCccceeecc-hhh
Confidence            2  34566778887766655544422222233333322111111       33454444444220  0    0000 000


Q ss_pred             c-----CCCcccccccccccccccccccccc-cCCcchhhHHHHHHHhhhhhhhcc---cchhhc--ccccccccccccc
Q 000863          397 C-----NDNLEHDVGLDFRSFNECEDLKVSI-VNSFDALQQELQEIMGQEERQLGE---SHELMK--FEGVNEDEVSGEY  465 (1247)
Q Consensus       397 ~-----~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~  465 (1247)
                      +     ...++.......      +...... -+...+.......-...+......   ....+.  ....++.. ..++
T Consensus       661 ~~~~~~~~~lv~~~es~~------~~~~~s~~~~~~~l~e~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~-~s~~  733 (1598)
T KOG0230|consen  661 YSKGPKQNGLVPAHESVL------NDLHESTLSILSKLPETRSGTHEGNEDKGPGLEPELANNQNIQRPEETEEQ-SSKD  733 (1598)
T ss_pred             hcCchhhccccccccccc------cccccccccccccccchhcccchhccccCccccccccccccccchhhhhhh-hccc
Confidence            0     011111100000      0000000 000000000000000000000000   000000  00011111 5567


Q ss_pred             CCCCCCCceEEEEEEeeecCCCCccCCceEEEEeecCCCCcchHHHHHHhhcCCCCCCCCCchhhhcceeEEEecCcEEE
Q 000863          466 FSAADTNQSILVSFSSRCVLKGTVCERSRLLRIKFYGSFDKPLGRYLHGDLFNQTSCCRSCNESAEAHVLCYTHQQGNLT  545 (1247)
Q Consensus       466 ~~~p~~HQsI~Vl~Ss~~~~~~~~C~~P~l~~i~fY~~~D~tLG~FLe~~c~~~~~~C~sC~~pm~~H~r~yvH~~g~l~  545 (1247)
                      .++|.+||+|+||||++|.+++.+|++||+++|+|||++|++|||||+++||++.|.|++|++||++|+|+|||++||++
T Consensus       734 ~~~~~~HQsilVl~ss~~~~k~~~C~r~~l~~ikyy~~~D~~lg~fL~~~~f~~~~~C~sC~~~~laHv~~yvh~~g~l~  813 (1598)
T KOG0230|consen  734 ALDPSSHQSILVLFSSRSVLKGSVCERPHLLRIKYYGSFDKPLGRFLRDYLFDQRYMCPSCNEPMLAHVRCYVHGNGSLT  813 (1598)
T ss_pred             CCCccccceeEEEEeeeeeccCCccccccEEEEEeeccccchHhHHHHHHHhcccccCccccchHHHHHHHHhhccCceE
Confidence            78999999999999999998888999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCcCCCCCCCCcEEEEecCcccCCCCCCCCCCceEeccchhhcccHHHHHHhhccCccccCccCCCCCccccce
Q 000863          546 ISVKCLSSVRLPGERDGKIWMWHRCLRCAHADGVPPATRRVVMSDAAWGLSFGKFLELSFSNHATANRIASCGHSLQRDC  625 (1247)
Q Consensus       546 I~v~~l~~~~lpg~~~~~I~mWs~C~~C~~~~~~~~~Tp~v~mSd~tw~lSFgKfLEL~F~~~~~~~r~~~C~Hsl~rDh  625 (1247)
                      |.|+++++. +||+++|+|||||||++|++.   ||+|++|+||++||++||||||||+||+|+++.|+++|||+|||||
T Consensus       814 I~v~~~~e~-l~~e~~~kI~~w~~ClkC~~~---~~sT~rv~~Sdaaw~lSfgKfLEl~fs~~a~~~R~~~C~Hsl~rD~  889 (1598)
T KOG0230|consen  814 ISVKKLPEL-LPGEQKGKIWMWSRCLKCNRF---PPSTRRVVMSDAAWGLSFGKFLELSFSNHATANRVASCGHSLHRDC  889 (1598)
T ss_pred             EEeeccccc-cccccCceEEEEeccccCCCC---CCCcceeEcchhhHhhhHHHHHHhhhccccccccccCCcchhhhhh
Confidence            999999876 999999999999999999974   8899999999999999999999999999999999999999999999


Q ss_pred             eeeceeCCeEEEEEeeeeeeeEEecCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCc
Q 000863          626 LRYYGFGSMIAIFRYSPIDILSVHLPPSVLEFNGLLQQEWIRKEAEELKVKMETLYAEISNVLEVMEQRSNSIGCEMSDS  705 (1247)
Q Consensus       626 ~ryFg~~~~va~F~Ys~I~v~ev~lPp~~l~~~~~~~~~~~~~e~~~v~~k~~~~f~~v~~~L~~i~~~~~~~~~~~~~~  705 (1247)
                      |||||||+|||+|+|++|++|+|.+||.+|+|+ +.+++|+++|.++|+.||+.+|++|.++|++|+++.       +  
T Consensus       890 L~ffgf~~mva~f~ys~i~v~~v~lpp~~l~~~-~~~~~~~~~e~k~v~~k~~~~~n~v~~~l~~i~~~~-------~--  959 (1598)
T KOG0230|consen  890 LRFFGFGNMVACFRYSPIEVYEVDLPPSKLEFN-HIQQEWLQEEIKEVIEKGEELYNEVLERLSRIAEKD-------E--  959 (1598)
T ss_pred             hhhcccCCceeeeeeccceeEEEeCChhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------c--
Confidence            999999999999999999999999999999999 877999999999999999999999999999999651       1  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccccc
Q 000863          706 TDLKSHILELKVQLESERNDYIGLLQPVVMETSEPGQTAVDILELNRLRRALLIGSHAWDRQLYSLNSLLKKGSIAKAKQ  785 (1247)
Q Consensus       706 ~~~~~~i~eL~~~l~~e~~~~~~~l~~~~~~~~~~~~~~~d~l~lN~l~r~L~~~~~~Wd~r~~~~~~~~~~~~~~~~~~  785 (1247)
                        -...+.+|+.+|.+|+.+|++.|+.++++....++..+|+|.+|++||.|...++.||.|++.+..+.| ....+.+ 
T Consensus       960 --~~~~i~~l~~~l~~e~~~f~~~l~~~~~~~~~~~~~s~d~l~l~~~rr~l~~~s~~w~~~l~s~~~~~k-~~~~~~~- 1035 (1598)
T KOG0230|consen  960 --NRPLIQELKELLKHEKKEFKQNLQPIFTLEVDDGQLSHDILALNRDRRALLASSYLWDERLISLSKSLK-LESSKDT- 1035 (1598)
T ss_pred             --ccchhhhhhhhhhhhHHHHHHhhhhhhhhccccCcchhhHHHHHHHHHHHHhhhccccccchhhhhhhc-ccccccc-
Confidence              145688999999999999999999999977777889999999999999999999999999999877666 1100000 


Q ss_pred             CCchhhhhhhcccccccCCC---CCC--------CCCCCCccCCCCCCCCCccchhhhhhhcccCCCCCCCCCC-Ccccc
Q 000863          786 GNASYAQLKELRTDLFCKDS---KLD--------HDNEENVSGSLDSLESPANDLHLQQKEELNLPTLEPFGSE-NSKLT  853 (1247)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  853 (1247)
                            ..++...-+..+..   ++.        .++++..+.   .........+.+++.  ++.  ....+. ...++
T Consensus      1036 ------~~~~~~~~~~~~~~r~p~~~k~~~~~~~~~~~~s~~~---~~~~~~lp~~~~s~~--~d~--~~~~~~~~~~~~ 1102 (1598)
T KOG0230|consen 1036 ------KPKESETNSTAKRKRSPEPQKGVDEDSFLTDSSSDVS---SLEHLNLPLPEDSNS--TDT--GLSGPSEVLEDN 1102 (1598)
T ss_pred             ------ccccccccCccccccCchhhccccccccccccccccC---ccccccCCCCCcccc--cch--hccCcccccccc
Confidence                  00000000000000   000        000110000   000000000001100  000  000000 00000


Q ss_pred             ccccc---cccccCCCcc-ccccchhhcccccCCCCccccccCCCCCCCCCcccccccCCCcccccccCCccccccchhh
Q 000863          854 SFLHN---REEDVHSDGE-ITSTLSEKIDSAWTGTDQVVPLVSQTDRPQAGFVGQISKIDNSPFKRLASPVRVHSFDSAL  929 (1247)
Q Consensus       854 ~~~~e---~~~~~~s~~~-~~s~~s~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~p~~~~s~~~~~  929 (1247)
                      .-+.+   .+....+.++ ....+.+.++++|.|....+...|-.                                .. 
T Consensus      1103 ~s~~~~~~~v~n~~s~~~~~~~~~~~~l~~~~~g~r~~~~~~P~s--------------------------------~~- 1149 (1598)
T KOG0230|consen 1103 ESIDEMLGSVRNTYSLANKVRKILKQILDSATIGNRANPKSSPFS--------------------------------GQ- 1149 (1598)
T ss_pred             cchhhcccccccccchhhHHHHHHHHhcccccccccccCCCCCCc--------------------------------hh-
Confidence            00111   1111122222 24456677777777765432222210                                00 


Q ss_pred             hHHHhhhcCCCCccccccccccccCCC-cccccccCchhhHHH-HHhhhChhhHhhhhccccCCCccccc--cccccccc
Q 000863          930 RFQERIARGLPHSLLHLSSIRSFHASG-DYRSMVRDPVSNVMR-TYSQILPLEAQKLNLILSSTPSFISS--ASRMVEGA 1005 (1247)
Q Consensus       930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~-~~~~~~~~~~~k~~~i~~~~p~~~s~--~~~~~~~~ 1005 (1247)
                        +.  .++++..      ....+..+ ++.+|++.||.+++. .+.+....+.++......+.|.+++.  ....+.++
T Consensus      1150 --~~--~~~~~~~------~~~~~~~e~~~~~~~e~~~~~~~~~~~~~e~~lns~~~~~~~~~~~k~~~s~~~s~~~~~~ 1219 (1598)
T KOG0230|consen 1150 --DH--STDLPLE------SNPIHVLEKELSSWIEDPLTNMYYREATKELSLNSQKNSAETKEPPKYPSSESESEPESSS 1219 (1598)
T ss_pred             --hh--ccccccc------cCCccccccccHHHHhhhhhhHhHHHHHHHHHhhcchhhcccccCCcCccccccccccccc
Confidence              00  0011100      01112222 678899999999866 66555666667777778889998887  44458899


Q ss_pred             eecccCCCCCCceEEeeCCCchhhhhhhcCChhHHHHHHhhccCCCCCCCccccccCCCccccccccccCCCCCcc-ccc
Q 000863         1006 RLLLPQRGDNDVVIAVFDDDPTSIISYALSSKEYEDWVADKLYDNDGSWSAGEIHKEGSAVSSFSAWQSFGSLDLD-YIH 1084 (1247)
Q Consensus      1006 ~l~lp~~g~~~~~v~v~e~epsSiIayaL~s~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~ 1084 (1247)
                      |+++| .|.+|.+++||||||+|+|||||++++|..+-.+.               +.+.++..++.  .+..+.. ...
T Consensus      1220 rLl~p-~~~ndl~vp~~edpp~s~ia~al~s~~~~~q~~~p---------------~~sis~~~S~~--~~~~s~~~e~~ 1281 (1598)
T KOG0230|consen 1220 RLLLP-LGLNDLVVPVYEDPPPSLIAYALSSKERINQESSP---------------GLSISFSLSNL--QGRLSKISEFD 1281 (1598)
T ss_pred             ceecc-ccCCcccCCcccCCCchhhhhhhcchhhccCCCCC---------------Ccccccccccc--ccchhhhhhhh
Confidence            99999 88999999999999999999999998887654211               00101111101  0001100 000


Q ss_pred             cCCCCCCCCC------CCCCcccCCC--CCCCceEEEEcCCCCCCCCcceEEEEEcCHHHHHHHHHHcCCChHHHHHhhc
Q 000863         1085 YGSYGSEDAS------SSVGTLFTDP--KKSPHLTISFGDESSTAGGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLS 1156 (1247)
Q Consensus      1085 ~~s~~~~~~~------~~~~~~~~~~--~~~~h~~~~f~~~~~~~~~~~~~~~~~y~~~~F~~lR~~~~~~~~~f~~SL~ 1156 (1247)
                      ....++.+.+      ..+.+..+..  ....|++++|+++..      +|+|++|||++|++||+.||.+|++||+||+
T Consensus      1282 ~~~~~sl~~s~l~~s~~~~~e~l~~~~~~~~~h~~~~f~egk~------k~svk~~yAe~F~~LR~~c~~sEe~fIrSLs 1355 (1598)
T KOG0230|consen 1282 DTKSESLDNSGLESSSYRRGENLQKSKLETRTHLEYQFSEGKA------KYSVKCYYAEQFRALRKICCPSEEDFIRSLS 1355 (1598)
T ss_pred             hhhhccccccccchhhhcchhhccccccccccceeeeccCCce------EEEEEEEehhhHHHHHHhhCchHHHHHHHHh
Confidence            0011111111      0111111112  556899999987765      9999999999999999999999999999999


Q ss_pred             cccccccCCCCcccceEEeccCceeeeccCHHHHHHHHHHHHHHHHHHHhhCCCCCCceeeeeeEEEEEEecCc
Q 000863         1157 RSRKWSAQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVRSLLH 1230 (1247)
Q Consensus      1157 ~~~~~~~~gGKSgs~F~~T~D~rfiiK~i~~~E~~~f~~~~p~Yf~y~~~~~~~~~~TlL~ki~G~y~v~~~~~ 1230 (1247)
                      ||.+|.|+|||||++|+||.|||||||+|+++|+++|++|||+||+||+++++++.||+||||||+|||.+.+-
T Consensus      1356 Rc~~W~aqGGKSgs~F~KTlDDRFIiKq~sk~EleSFikFAP~YFkYl~~s~~~~~PT~LAKIlGiyqV~vK~~ 1429 (1598)
T KOG0230|consen 1356 RCVKWEAQGGKSGSFFAKTLDDRFIIKQMSKTELESFIKFAPAYFKYLTESISQKSPTCLAKILGIYQVSVKSP 1429 (1598)
T ss_pred             cCcccccCCCcccceeeccccchhhhhhccHHHHHHHHhhhHHHHHHHHHHHhcCCcchhhhhheeEEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988743

>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms] Back     alignment and domain information
>smart00330 PIPKc Phosphatidylinositol phosphate kinases Back     alignment and domain information
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate Back     alignment and domain information
>KOG0229 consensus Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms] Back     alignment and domain information
>PLN03185 phosphatidylinositol phosphate kinase; Provisional Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in [] Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1247
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-22
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-19
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 7e-17
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 7e-17
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 7e-17
1a6d_A545 Thermosome From T. Acidophilum Length = 545 2e-15
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 5e-15
1gml_A178 Crystal Structure Of The Mouse Cct Gamma Apical Dom 1e-14
1a6d_B543 Thermosome From T. Acidophilum Length = 543 5e-13
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 2e-11
3izh_A513 Mm-Cpn D386a With Atp Length = 513 2e-11
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 3e-11
3izi_A513 Mm-Cpn Rls With Atp Length = 513 5e-11
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 6e-11
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 1e-10
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 9e-10
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 7e-09
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 9e-09
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 1e-08
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-08
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 2e-08
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-08
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-06
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-06
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-04
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure 
Iteration: 1

 Score =  104 bits (259), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 149/312 (47%), Gaps = 25/312 (8%)
Query: 58  WLGIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHK 117
           W  +   IA  A   V+ + +    +D   Y +V+ I  G   +S  ++GV+  K++ H 
Sbjct: 156 WSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP 215
Query: 118 RMTSQYRNPRLLILGGALEYQRVPNQL-------ASFNTLLQQENDHLKMVISKIEALRP 170
           RM    +NPR+++L  +LEY++  +Q          F  +LQ E ++++ +   I  L+P
Sbjct: 216 RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKP 275
Query: 171 NVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGH-C 229
           +V++ EK +S  AQ  L+   I+ +  V++    RIAR  GA I    + +    +G   
Sbjct: 276 DVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGA 335
Query: 230 ELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYA 289
            L +++K+ +E+ T             +   C     C +LLRG  +E L +V+  +Q A
Sbjct: 336 GLLEIKKIGDEYFT-------------FITECKDPKACTILLRGASKEILSEVERNLQDA 382
Query: 290 VFAAYHLSLETSFLADEGATLPKMRLKHSISKPERMMADNAISAIPSSKVAANYQEVADD 349
           +    ++ L+   +   GA+  +M + H++++  + M    +   P   VA   + +   
Sbjct: 383 MQVCRNVLLDPQLVPGGGAS--EMAVAHALTEKSKAM--TGVEQWPYRAVAQALEVIPRT 438
Query: 350 STRDDGSVSLRL 361
             ++ G+ ++RL
Sbjct: 439 LIQNCGASTIRL 450
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1247
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 8e-37
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 3e-35
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 2e-33
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 2e-32
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 4e-32
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 6e-32
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 6e-32
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 1e-31
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 1e-31
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 2e-31
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 2e-31
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 1e-30
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 1e-30
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 5e-30
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 2e-29
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 4e-29
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 2e-28
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 6e-28
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 1e-27
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 1e-27
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 3e-27
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 8e-27
2ybx_A 394 Phosphatidylinositol-5-phosphate 4-kinase type-2; 2e-26
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 9e-26
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 1e-25
2gk9_A 392 Phosphatidylinositol-4-phosphate 5-kinase, type II 2e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
 Score =  136 bits (344), Expect = 8e-37
 Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 21/181 (11%)

Query: 101 ESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQL-------ASFNTLLQQ 153
           +S  ++GV+  K++ H RM    +NPR+++L  +LEY++  +Q          F  +LQ 
Sbjct: 3   DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 62

Query: 154 ENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGAL 213
           E +++  +   I  L+P+V++ EK +S  AQ  L+   ++ +  V++    RIAR  GA 
Sbjct: 63  EEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGAR 122

Query: 214 ITPSIDNISTTRLGH-CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLR 272
           I    + +    +G    L +++K+ +E+               +   C     C +LLR
Sbjct: 123 IVSRPEELREDDVGTGAGLLEIKKIGDEY-------------FTFITDCKDPKACTILLR 169

Query: 273 G 273
           G
Sbjct: 170 G 170
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A Length = 394 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens} Length = 392 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1247
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 2e-31
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 4e-31
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 1e-29
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 2e-28
d1bo1a_ 383 d.143.1.2 (A:) Phosphatidylinositol phosphate kina 1e-24
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 1e-08
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score =  119 bits (299), Expect = 2e-31
 Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 21/181 (11%)

Query: 101 ESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQ-------LASFNTLLQQ 153
           +S  ++GV+  K++ H RM    +NPR+++L  +LEY++  +Q          F  +LQ 
Sbjct: 1   DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 60

Query: 154 ENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGAL 213
           E +++  +   I  L+P+V++ EK +S  AQ  L+   ++ +  V++    RIAR  GA 
Sbjct: 61  EEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGAR 120

Query: 214 ITPSIDNISTTRLGH-CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLR 272
           I    + +    +G    L +++K+ +E                +   C     C +LLR
Sbjct: 121 IVSRPEELREDDVGTGAGLLEIKKIGDE-------------YFTFITDCKDPKACTILLR 167

Query: 273 G 273
           G
Sbjct: 168 G 168
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1247
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 100.0
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 100.0
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.98
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.98
d1bo1a_ 383 Phosphatidylinositol phosphate kinase IIbeta, PIPK 99.96
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.22
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.11
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.05
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 98.03
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 97.98
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 97.76
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 97.59
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

Probab=100.00  E-value=3.8e-35  Score=271.02  Aligned_cols=160  Identities=28%  Similarity=0.580  Sum_probs=151.8

Q ss_pred             CCEEEEEEEEEECCCCCCCCEEECCCCEEEEECCCCCCCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             632596589931257899930114971999600023345867-------8889999999999999999999995399979
Q 000863          101 ESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPN-------QLASFNTLLQQENDHLKMVISKIEALRPNVL  173 (1247)
Q Consensus       101 DS~lI~GvV~~Knvahk~M~~~i~nprIlLL~~~Ley~r~~~-------~~~sle~ii~qE~e~L~~~V~kI~~~~pnVV  173 (1247)
                      ||++|+|+||+|+++|++||+.++||||||++|+|||++.+.       ...+++.++++|++|+.++|++|+++|||||
T Consensus         1 DS~li~Gvvi~k~~~~~~m~~~i~~~kIlll~~~le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vv   80 (168)
T d1gmla_           1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVV   80 (168)
T ss_dssp             CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEE
T ss_pred             CCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             96799899991605786776546786599993321232112445130389999999999999999999999985387669


Q ss_pred             EECCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCEECCCCCCCCCCCCEE-EEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             8547878899999998595357037948899999996992726777899998324-437999995163222334578886
Q 000863          174 LVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGH-CELFKLEKVSEEHETSNQFNKKPS  252 (1247)
Q Consensus       174 Lvek~Vs~~Al~~L~~~gI~vv~~VK~~~LeRIAr~TGA~Iissid~L~~~~LG~-C~~f~v~~~~~e~~~~~~~~k~~~  252 (1247)
                      ||+|+|++.|+++|.++||++++||++.+|+||||||||+|+++++++++++||+ |+.++++++++             
T Consensus        81 ~~~~~I~~~a~~~L~~~gI~~~~rv~~~dl~ria~~tga~iv~si~~l~~~~lG~~~~~~~~~~~~~-------------  147 (168)
T d1gmla_          81 ITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGD-------------  147 (168)
T ss_dssp             EESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETT-------------
T ss_pred             EECCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCCEECCHHHCCCCCCCCCCCEEEEEEECC-------------
T ss_conf             8727787899999987798126257999999999987986357620067554556341799999788-------------


Q ss_pred             CEEEEEECCCCCCEEEEEECC
Q ss_conf             159999857998548999647
Q 000863          253 KTLMYFEGCPRRLGCMVLLRG  273 (1247)
Q Consensus       253 KtliffeGc~~~~gcTIlLRG  273 (1247)
                      ++|+||+||+.+.+|||+|||
T Consensus       148 ~~~~~~~~~~~~~~~TIllRG  168 (168)
T d1gmla_         148 EYFTFITDCKDPKACTILLRG  168 (168)
T ss_dssp             EEEEEEEEESSTTSCEEEEEC
T ss_pred             EEEEEEEECCCCCEEEEEEEC
T ss_conf             599999946899889999849
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure