Citrus Sinensis ID: 000890

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------124
MATSSSSLVSGVSVPQIRPSFSRRDKGNWIVRPRSHLSFRSGFTAKRLSFLSPARWSGGVAGGESAFHVHKLDTRKRRASNSILAEREQFNCTSCSIINRISRSRLVNSISRAFLDKSSFHLLRSDSVKHVLVPRATVGPDEPHAASTTWPDGIIERQSLDPLYPELERSEFEAFLNAELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKREKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENETASASTPTSSAFGAMANFLVPKLSVGLPGSLSHERSSNSDQSKLIRRERHAVRPPVEHNWSLSGSGADIPVNKVRTYGDLRNVLMKRIFLSALHFRINTRYKSSNPPFTSVEMDHSDSGREGCTVTTLTVTAEPKNWQSAVRVAVQEVRRLKEFGVTNGELTRYMDALLKDSEHLAAMIDNISSVDNLDFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGRPSAPVPAAIVACVPKKVHIDGIGETEFKISPNEIVDAIKSGMEEPIEAEPELEVPKELISASELEELKLRCRPSFIPPRPELNVTKVHDKESGITQLRLSNGIPINYKISKSEAQGGVMRLIVGGGRAAESSESRGAVIVGVRTLSEGGRVGKFSREQVELFCVNHLINCSLESTEEFIAMEFRFTLRDNGMRAAFQLLHMVLEHSVWLDDAFDRARQLYLSYYRSIPKSLERSTAHKLMLAMLNGDERFVEPTPKSLENLNLKSVKEAVMNQFVGNNMEVSIVGDFSEEEIESCILDYLGTVRATNDSKREHEYSPILFRPSPSDLHFQQVFLKDTDERACAYIAGPAPNRWGFTVDGMDLFKSIDNTSCSFDMPPKSEESMMLKDIEKDQQRKLRSHPLFFGITMGLLAEIINSRLFTTVRDSLGLTYDVSFELNLFDRLKLGWYVISVTSPPGKVHKAVDACKNVLRGLHSNRIVQRELDRAKRTLLMRHEAEIKSNAYWLGLLAHLQASSVPRKDISCIKDLMSLYEAASVEDIYLAYEQLRVDEDSLYSCIGIAGAQAGDEETASSEEESDEGYPGGVIPVGRGLSTMTRPTT
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccEEEEEccccEEEEEEccccccEEEEEEEEEccccccccccccHHHHHHHHccccccccHHHHHccccccccccccEEEEEEEccccccccHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccHHHHccccHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHcccccccccccccccHHcccHHHHHHHHHccccccccccccccccccccccccEEEEEEccccEEEEEEccccccEEEEEEEEccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHccccEEEEEEcccEEEEEEEEEcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccHHHHHcccHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEcccccccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHcccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccc
cccccccEEccccccccccccccccccEEEEccccccEEcccccccccEEEcccccccccccccccHHccccccccccccccEEccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHHcccccccccccEEEEcccccEEEEEccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHccccccccccccccccccEcccccEEEEEccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHccccccccccccccHHHHHcccHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEccccccccEEEEEEccccccccEEEccccccccccEEEEcccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccEEccccEEEEEEEccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccEEEEEccccccccccccccEEEEccccccccccHHHHHHHHHHHHccccccccccccccHHcccHHHHHHHccccccccccccccEEEEEEcccccEEEEEEcccEEEEEEEccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHcccEEEEEEEccccEEEEcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHcccHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEcccccccEEEEEEcccccccccccccccccccccccEEcccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEcccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHHHHHccccEEEEEEccccHHcHHHccccHHHHHccccccccccccccccccccccc
matsssslvsgvsvpqirpsfsrrdkgnwivrprshlsfrsgftakrlsflsparwsggvaggesafhvhkldtrkrraSNSILAEREQFNCTSCSIINRISRSRLVNSISRAFldkssfhllrsdsvkhvlvpratvgpdephaasttwpdgiierqsldplypeleRSEFEAFLnaelpshpklyrgqlrnglrylilpnkvpasrfEAHMEihagsideeddEQGIAHMIEHVAFLgskkrekllgtgarsnaytdfhhtvfhihsptytkdsdedlLPLVLDALNEiafhpkflsSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHsenklskrfpigLEEQIKKWDADKIRKFherwyfpanatlyivgdidnvskTIDQIEAVFghtgnenetasastptssafgAMANFLvpklsvglpgslsherssnsdqsKLIRrerhavrppvehnwslsgsgadipvnkvrtyGDLRNVLMKRIFLSALHFRintrykssnppftsvemdhsdsgregctvttltvtaepknwQSAVRVAVQEVRRLKEFGVTNGELTRYMDALLKDSEHLAAMIDnissvdnldfimesdalghtvmdQRQGHASLVAVAGTITLEEVNSIGAEVLEFIsdfgrpsapvpaAIVAcvpkkvhidgigetefkispNEIVDAIKsgmeepieaepelevpkeLISASELEELklrcrpsfipprpelnvtkvhdkesgitqlrlsngipinykiskseaqgGVMRLIVGggraaessesrGAVIVGVRTlseggrvgkfSREQVELFCVNHLincslestEEFIAMEFRFTLRDNGMRAAFQLLHMVLEHSVWLDDAFDRARQLYLSYYRSIPKSLERSTAHKLMLAMLngderfveptpkslenlnlKSVKEAVMNQFVGNNmevsivgdfseEEIESCILDYLGtvratndskreheyspilfrpspsdlhfQQVFLKDTDERACayiagpapnrwgftvdgMDLFKsidntscsfdmppkseesMMLKDIEKDQQrklrshplffGITMGLLAEIINSRLFTTvrdslgltydvsfelnlfdrlkLGWYVisvtsppgkvhKAVDACKNVLRGLHSNRIVQRELDRAKRTLLMRHEAEIKSNAYWLGLLAHLqassvprkdisCIKDLMSLYEAASVEDIYLAYEQLRVDEDSLYSCIGIagaqagdeetasseeesdegypggvipvgrglstmtrptt
matsssslvsgvsvpqirpsfsrrdkgnwivrprshlsfrsgfTAKRLSFLSPARWSGGVAGGEsafhvhkldtrkRRASnsilaereqfnctscsiinrisrsrlVNSISRAFLDKSSFHLLRSDSVKHVLVPRatvgpdephaasttwpdgiieRQSLDPLYPELERSEFEAFLNAELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKREKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAfhpkflssrveKERRAILSELQMMNTIEYRVDCQLLQHLHSenklskrfpigLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENETASASTPTSSAFGAMANFLVPKLSVGLPgslsherssnsdqsklirrerhavrppvehnwslsgsgadipvnkVRTYGDLRNVLMKRIFLSALhfrintrykssnppftsvemdhsdsgreGCTVTTLtvtaepknwqsAVRVAVQEVRRlkefgvtngelTRYMDALLKDSEHLAAMIDNISSVDNLDFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGRPSAPVPAAIVACVPKKVHIDgigetefkispnEIVDAIKSGMEEPIEAEPELEVPKELISASELEELklrcrpsfipprpelnvtkvhdkesgitqlrlsngIPINYKiskseaqggVMRLIVGGGraaessesrgaVIVGVrtlseggrvgkFSREQVELFCVNHLINCSLESTEEFIAMEFRFTLRDNGMRAAFQLLHMVLEHSVWLDDAFDRARQLYLSYYRSIPKSLERSTAHKLMLAMLNGDERFVEPTPKSLENLNLKSVKEAVMNQFVGNNMEVSIVGDFSEEEIESCILDYLGTVRATNDSKREHEYspilfrpspsdLHFQQVFLKDTDERACAYIagpapnrwgfTVDGMDLFKSIDNTSCSFDMPPKSEESMMLKDIEKDQQRKLRSHPLFFGITMGLLAEIINSRLFTTVRDSLGLTYDVSFELNLFDRLKLGWYVISVtsppgkvhKAVDACKNVlrglhsnrivqreLDRAKRTLLMRHEAEIKSNAYWLGLLAHLQASSVPRKDISCIKDLMSLYEAASVEDIYLAYEQLRVDEDSLYSCIGIAGAQAGDEETAsseeesdegypggvipvgrglstmtrptt
MATsssslvsgvsvPQIRPSFSRRDKGNWIVRPRSHLSFRSGFTAKRLSFLSPARWSGGVAGGESAFHVHKLDTRKRRASNSILAEREQFNCTscsiinrisrsrlvnsisrAFLDKSSFHLLRSDSVKHVLVPRATVGPDEPHAASTTWPDGIIERQSLDPLYPELERSEFEAFLNAELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKREKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENEtasastptssaFGAMANFLVPKLSVGLPGSLSHERSSNSDQSKLIRRERHAVRPPVEHNWSLSGSGADIPVNKVRTYGDLRNVLMKRIFLSALHFRINTRYKSSNPPFTSVEMDHSDSGREGCTVTTLTVTAEPKNWQSAVRVAVQEVRRLKEFGVTNGELTRYMDALLKDSEHLAAMIDNISSVDNLDFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGRpsapvpaaivacvpkkvHIDGIGETEFKISPNEIVDAIKSGMeepieaepelevpKELISASELEELKLRCRPSFIPPRPELNVTKVHDKESGITQLRLSNGIPINYKISKSEAQGGVMRLIVGGGRAAESSESRGAVIVGVRTLSEGGRVGKFSREQVELFCVNHLINCSLESTEEFIAMEFRFTLRDNGMRAAFQLLHMVLEHSVWLDDAFDRARQLYLSYYRSIPKSLERSTAHKLMLAMLNGDERFVEPTPKSLENLNLKSVKEAVMNQFVGNNMEVSIVGDFSEEEIESCILDYLGTVRATNDSKREHEYSPILFRPSPSDLHFQQVFLKDTDERACAYIAGPAPNRWGFTVDGMDLFKSIDNTSCSFDMPPKSEESMMLKDIEKDQQRKLRSHPLFFGITMGLLAEIINSRLFTTVRDSLGLTYDVSFELNLFDRLKLGWYVISVTSPPGKVHKAVDACKNVLRGLHSNRIVQRELDRAKRTLLMRHEAEIKSNAYWLGLLAHLQASSVPRKDISCIKDLMSLYEAASVEDIYLAYEQLRVDEDSLYSCIGIAGAQagdeetasseeesdegYPGGVIPVGRGLSTMTRPTT
***************************NWIVRPRSHLSFRSGFTAKRLSFLSPARWSGGVAGGESAFHVHKLD********SILAEREQFNCTSCSIINRISRSRLVNSISRAFLDKSSFHLLRSDSVKHVLVPRATV**********TWPDGIIERQSLDPLYPELERSEFEAFLNAELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHA**********GIAHMIEHVAFLGSKKREKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGH*******************AMANFLVPKL************************************WSLSGSGADIPVNKVRTYGDLRNVLMKRIFLSALHFRINTRY********************GCTVTTLTVTAEPKNWQSAVRVAVQEVRRLKEFGVTNGELTRYMDALLKDSEHLAAMIDNISSVDNLDFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGRPSAPVPAAIVACVPKKVHIDGIGETEFKISPNEIVDA*******************************************************GITQLRLSNGIPINYKISKSEAQGGVMRLIVGG**********GAVIVGVRTLSEGGRVGKFSREQVELFCVNHLINCSLESTEEFIAMEFRFTLRDNGMRAAFQLLHMVLEHSVWLDDAFDRARQLYLSYYRSIPKSLERSTAHKLMLAMLNGD**F**********LNLKSVKEAVMNQFVGNNMEVSIVGDFSEEEIESCILDYLGTVRAT********YSPILFRPSPSDLHFQQVFLKDTDERACAYIAGPAPNRWGFTVDGMDLFKSIDNT*****************************HPLFFGITMGLLAEIINSRLFTTVRDSLGLTYDVSFELNLFDRLKLGWYVISVTSPPGKVHKAVDACKNVLRGLHSNRIVQRELDRAKRTLLMRHEAEIKSNAYWLGLLAHLQASSVPRKDISCIKDLMSLYEAASVEDIYLAYEQLRVDEDSLYSCIGIAG**************************************
***********VSVPQIR**********************************************************************QFNCTSCSIINRISRSRLVNSISRAFLDKSSFHLLRSDS****************************************************LPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKREKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGN**************FGAMANFLVPKLSVGLPGSLSHERSSNSDQSKLIRRERHAVRPPVEHNWSLSGSGADIPVNKVRTYGDLRNVLMKRIFLSALHFRINTRYKSSNPPFTSVEMDHSDSGREGCTVTTLTVTAEPKNWQSAVRVAVQEVRRLKEFGVTNGELTRYMDALLKDSEHL*********VDNLDFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGRPSAPVPAAIVACVPKKVHIDGIGETEFKISPNEIVDAIKSGMEEPIEAEPELEVPKELISA*E*************************DKESGITQLRLSNGIPINYKISKSEAQGGVMRLIVGGGRAAESSESRGAVIVGVRTLSEGGRVGKFSREQVELFCVNHLINCSLESTEEFIAMEFRFTLRDNGMRAAFQLLHMVLEHSVWLDDAFDRARQLYL***********RSTAHKLMLAMLNGDERFVEPTPKSLENLNLKSVKEAVMNQFVGNNMEVSIVGDFSEEEIESCILDYLGTVRATN********************HFQQVFLKDTDERACAYIAGPAPNRWGFTVDGMDLFKSIDNTSCSFDMPPKSEESMMLKDIEKDQQRKLRSHPLFFGITMGLLAEIINSRLFTTVRDSLGLTYDVSFELNLFDRLKLGWYVISVTSPPGKVHKAVDACKNVLRGLHSNRIVQRELDRAKRTLLM*********AYWLGLLAHLQASSVPRKDISCIKDLMSLYEAASVEDIYLAYEQLRVDEDSLYSCIGI****************************************
*************VPQIRPSFSRRDKGNWIVRPRSHLSFRSGFTAKRLSFLSPARWSGGVAGGESAFHVHKLDTRKRRASNSILAEREQFNCTSCSIINRISRSRLVNSISRAFLDKSSFHLLRSDSVKHVLVPRATVGPDEPHAASTTWPDGIIERQSLDPLYPELERSEFEAFLNAELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKREKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGN**********TSSAFGAMANFLVPKLSVGLP***************LIRRERHAVRPPVEHNWSLSGSGADIPVNKVRTYGDLRNVLMKRIFLSALHFRINTRYKSSNPPFTS************CTVTTLTVTAEPKNWQSAVRVAVQEVRRLKEFGVTNGELTRYMDALLKDSEHLAAMIDNISSVDNLDFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGRPSAPVPAAIVACVPKKVHIDGIGETEFKISPNEIVDAIKSGMEEPIEAEPELEVPKELISASELEELKLRCRPSFIPPRPELNVTKVHDKESGITQLRLSNGIPINYKISKSEAQGGVMRLIVGG*********RGAVIVGVRTLSEGGRVGKFSREQVELFCVNHLINCSLESTEEFIAMEFRFTLRDNGMRAAFQLLHMVLEHSVWLDDAFDRARQLYLSYYRSIPKSLERSTAHKLMLAMLNGDERFVEPTPKSLENLNLKSVKEAVMNQFVGNNMEVSIVGDFSEEEIESCILDYLGTVRATNDSKREHEYSPILFRPSPSDLHFQQVFLKDTDERACAYIAGPAPNRWGFTVDGMDLFKSIDNTSCSFDMPPKSEESMMLKDIEKDQQRKLRSHPLFFGITMGLLAEIINSRLFTTVRDSLGLTYDVSFELNLFDRLKLGWYVISVTSPPGKVHKAVDACKNVLRGLHSNRIVQRELDRAKRTLLMRHEAEIKSNAYWLGLLAHLQASSVPRKDISCIKDLMSLYEAASVEDIYLAYEQLRVDEDSLYSCIGIAGA*****************YPGGVIPVGRGLSTMTRPTT
********VSGVSVPQIRPSFSRRDKGNWIVRPRSHLSFRSGFTAKRLSFLSPARWSGGVAGGES****************SILA*REQFNCTSCSIINRISRSRLVNSISRAFLDKSSF**L*********V*RATVGPDEPHAASTTWPDGIIERQSLDPLYPELERSEFEAFLNAELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKREKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNE*******TPTSSAFGAMANFLVPKLSVGLPGSLSHERSSNSDQSKLIRRERHAVRPPVEHNWSLSGSGADIPVNKVRTYGDLRNVLMKRIFLSALHFRINTRYKSSNPPFTSVEMDHSDSGREGCTVTTLTVTAEPKNWQSAVRVAVQEVRRLKEFGVTNGELTRYMDALLKDSEHLAAMIDNISSVDNLDFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGRPSAPVPAAIVACVPKKVHIDGIGETEFKISPNEIVDAIKSGMEEPIEAEPELEVPKELISASELEELKLRCRPSFIPPRPELNVTKVHDKESGITQLRLSNGIPINYKISKSEAQGGVMRLIVGGGRAAESSESRGAVIVGVRTLSEGGRVGKFSREQVELFCVNHLINCSLESTEEFIAMEFRFTLRDNGMRAAFQLLHMVLEHSVWLDDAFDRARQLYLSYYRSIPKSLERSTAHKLMLAMLNGDERFVEPTPKSLENLNLKSVKEAVMNQFVGNNMEVSIVGDFSEEEIESCILDYLGTVRATNDSKREHEYSPILFRPSPSDLHFQQVFLKDTDERACAYIAGPAPNRWGFTVDGMDLFKSIDNTSCSFDMPPKSEESMMLKDIEKDQQRKLRSHPLFFGITMGLLAEIINSRLFTTVRDSLGLTYDVSFELNLFDRLKLGWYVISVTSPPGKVHKAVDACKNVLRGLHSNRIVQRELDRAKRTLLMRHEAEIKSNAYWLGLLAHLQASSVPRKDISCIKDLMSLYEAASVEDIYLAYEQLRVDEDSLYSCIGIAGAQAGDEETASSEEESDEGYPGGVIPVGRGL********
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MATSSSSLVSGVSVPQIRPSFSRRDKGNWIVRPRSHLSFRSGFTAKRLSFLSPARWSGGVAGGESAFHVHKLDTRKRRASNSILAEREQFNCTSCSIINRISRSRLVNSISRAFLDKSSFHLLRSDSVKHVLVPRATVGPDEPHAASTTWPDGIIERQSLDPLYPELERSEFEAFLNAELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKREKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENETASASTPTSSAFGAMANFLVPKLSVGLPGSLSHERSSNSDQSKLIRRERHAVRPPVEHNWSLSGSGADIPVNKVRTYGDLRNVLMKRIFLSALHFRINTRYKSSNPPFTSVEMDHSDSGREGCTVTTLTVTAEPKNWQSAVRVAVQEVRRLKEFGVTNGELTRYMDALLKDSEHLAAMIDNISSVDNLDFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGRPSAPVPAAIVACVPKKVHIDGIGETEFKISPNEIVDAIKSGMEEPIEAEPELEVPKELISASELEELKLRCRPSFIPPRPELNVTKVHDKESGITQLRLSNGIPINYKISKSEAQGGVMRLIVGGGRAAESSESRGAVIVGVRTLSEGGRVGKFSREQVELFCVNHLINCSLESTEEFIAMEFRFTLRDNGMRAAFQLLHMVLEHSVWLDDAFDRARQLYLSYYRSIPKSLERSTAHKLMLAMLNGDERFVEPTPKSLENLNLKSVKEAVMNQFVGNNMEVSIVGDFSEEEIESCILDYLGTVRATNDSKREHEYSPILFRPSPSDLHFQQVFLKDTDERACAYIAGPAPNRWGFTVDGMDLFKSIDNTSCSFDMPPKSEESMMLKDIEKDQQRKLRSHPLFFGITMGLLAEIINSRLFTTVRDSLGLTYDVSFELNLFDRLKLGWYVISVTSPPGKVHKAVDACKNVLRGLHSNRIVQRELDRAKRTLLMRHEAEIKSNAYWLGLLAHLQASSVPRKDISCIKDLMSLYEAASVEDIYLAYEQLRVDEDSLYSCIGIAGAQAGDEETASSEEESDEGYPGGVIPVGRGLSTMTRPTT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1237 2.2.26 [Sep-21-2011]
P31828931 Probable zinc protease Pq N/A no 0.162 0.215 0.339 6e-27
P45181926 Probable zinc protease Pq yes no 0.160 0.214 0.352 2e-25
O86835459 Uncharacterized zinc prot yes no 0.164 0.444 0.284 4e-12
Q5UPX9440 Putative zinc protease L2 N/A no 0.166 0.468 0.259 3e-11
P37648498 Protein YhjJ OS=Escherich N/A no 0.181 0.449 0.240 6e-10
P55679512 Uncharacterized zinc prot yes no 0.141 0.341 0.272 1e-09
Q42290531 Probable mitochondrial-pr no no 0.174 0.406 0.266 3e-09
Q03346489 Mitochondrial-processing yes no 0.122 0.308 0.319 4e-09
Q04805409 Uncharacterized zinc prot yes no 0.157 0.476 0.262 4e-09
P50335495 Protein YhjJ OS=Salmonell yes no 0.178 0.446 0.25 5e-09
>sp|P31828|PQQL_ECOLI Probable zinc protease PqqL OS=Escherichia coli (strain K12) GN=pqqL PE=3 SV=2 Back     alignment and function desciption
 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 108/215 (50%), Gaps = 14/215 (6%)

Query: 175 FLNAELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIE 234
            + A LP   KL  GQL NGLRY+I P+  P  +    ++IH GS+ EED+E G+AH +E
Sbjct: 24  LIAAALPQDEKLITGQLDNGLRYMIYPHAHPKDQVNLWLQIHTGSLQEEDNELGVAHFVE 83

Query: 235 HVAFLGSKKR--EKLLGT--------GARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLV 284
           H+ F G+K     K++ T        G   NAYT +  TV+ +  PT  K +    L  V
Sbjct: 84  HMMFNGTKTWPGNKVIETFESMGLRFGRDVNAYTSYDETVYQVSLPTTQKQN----LQQV 139

Query: 285 LDALNEIAFHPKFLSSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIG 344
           +   +E +    F    V+ ER  I  E +     ++R        L +  +   R PIG
Sbjct: 140 MAIFSEWSNAATFEKLEVDAERGVITEEWRAHQDAKWRTSQARRPFLLANTRNLDREPIG 199

Query: 345 LEEQIKKWDADKIRKFHERWYFPANATLYIVGDID 379
           L + +      ++R+F++RWY P N T  +VGDID
Sbjct: 200 LMDTVATVTPAQLRQFYQRWYQPNNMTFIVVGDID 234

Escherichia coli (strain K12) (taxid: 83333)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -
>sp|P45181|PQQL_HAEIN Probable zinc protease PqqL OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pqqL PE=3 SV=1 Back     alignment and function description
>sp|O86835|Y5738_STRCO Uncharacterized zinc protease SCO5738 OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=SCO5738 PE=3 SV=1 Back     alignment and function description
>sp|Q5UPX9|YL233_MIMIV Putative zinc protease L233 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L233 PE=3 SV=1 Back     alignment and function description
>sp|P37648|YHJJ_ECOLI Protein YhjJ OS=Escherichia coli (strain K12) GN=yhjJ PE=1 SV=1 Back     alignment and function description
>sp|P55679|Y4WA_RHISN Uncharacterized zinc protease y4wA OS=Rhizobium sp. (strain NGR234) GN=NGR_a01040 PE=3 SV=1 Back     alignment and function description
>sp|Q42290|MPPB_ARATH Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2 Back     alignment and function description
>sp|Q03346|MPPB_RAT Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3 Back     alignment and function description
>sp|Q04805|YMXG_BACSU Uncharacterized zinc protease YmxG OS=Bacillus subtilis (strain 168) GN=ymxG PE=3 SV=3 Back     alignment and function description
>sp|P50335|YHJJ_SALTY Protein YhjJ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yhjJ PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1237
2555506581268 pitrilysin, putative [Ricinus communis] 0.981 0.957 0.775 0.0
2977456371276 unnamed protein product [Vitis vinifera] 0.952 0.923 0.797 0.0
3594918921269 PREDICTED: uncharacterized protein LOC10 0.952 0.928 0.797 0.0
4494703601261 PREDICTED: uncharacterized protein LOC10 0.991 0.972 0.753 0.0
4494777901267 PREDICTED: uncharacterized protein LOC10 0.994 0.970 0.751 0.0
2241288841195 predicted protein [Populus trichocarpa] 0.916 0.948 0.803 0.0
3565384931257 PREDICTED: uncharacterized protein LOC10 0.919 0.905 0.790 0.0
3564974071253 PREDICTED: uncharacterized protein LOC10 0.917 0.905 0.789 0.0
2977952951275 metalloendopeptidase [Arabidopsis lyrata 0.991 0.962 0.724 0.0
152389521265 Insulinase (Peptidase family M16) family 0.993 0.971 0.723 0.0
>gi|255550658|ref|XP_002516378.1| pitrilysin, putative [Ricinus communis] gi|223544476|gb|EEF45995.1| pitrilysin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1946 bits (5041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 979/1262 (77%), Positives = 1073/1262 (85%), Gaps = 48/1262 (3%)

Query: 12   VSVPQIRPSFSRRD--KGNWIVRPR-SHLSF-RSGFTAKRLSFLSPARWSGGVAGGESAF 67
            +SVPQIR   S  D  + N +  PR   LS   + F  K       ++W   V  G S  
Sbjct: 19   MSVPQIRSCLSPSDNRRVNRLQPPRLPRLSTPLAQFHQKN------SQWQHEVGYGGSGS 72

Query: 68   HVHKLDTRKRRASNSILAER-------EQFNCTSCSIIN--RISRSRLVNSISRAFLDKS 118
               K +  +RR+S  +L ER       +Q NC SC + +  R  R+ +   I  AF DKS
Sbjct: 73   CRKKNNAWERRSS--LLGERVAESSFTKQNNCVSCFLNHSRRGRRTSVTRRIPGAFADKS 130

Query: 119  SFHLLRSDSVKHVLVPRATVGPDEPHAASTTWPDGIIERQSLDPLYPELERSEFEAFLNA 178
            +FHL    SV+ V VP A+VGP+EPHAAST  PDGI+ERQ  D LYPEL R+    FL+ 
Sbjct: 131  AFHLPGFASVRGVHVPCASVGPNEPHAASTACPDGILERQDSDLLYPELVRTGLAEFLST 190

Query: 179  ELPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAF 238
            ELP+HPKLYRGQL+NGLRYLILPNKVP +RFEAHME+HAGSIDEE+DEQGIAHMIEHVAF
Sbjct: 191  ELPTHPKLYRGQLKNGLRYLILPNKVPPNRFEAHMEVHAGSIDEEEDEQGIAHMIEHVAF 250

Query: 239  LGSKKREKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFL 298
            LGSKKREKLLGTGARSNAYTDFHHTVFHIHSPT TKD D DLLP VLDALNEIAFHPKFL
Sbjct: 251  LGSKKREKLLGTGARSNAYTDFHHTVFHIHSPTTTKDGDGDLLPSVLDALNEIAFHPKFL 310

Query: 299  SSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDADKIR 358
            SSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDADKIR
Sbjct: 311  SSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDADKIR 370

Query: 359  KFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENETASASTPTSSAFGAMANF 418
            KFHERWYFPANATLYIVGDID +SKT+ QIE VFG TG + ETASA  P  SAFGAMA+F
Sbjct: 371  KFHERWYFPANATLYIVGDIDKISKTVHQIETVFGQTGLDIETASAPAP--SAFGAMASF 428

Query: 419  LVPKLSVGLPGSLSHERSSNSDQSKLIRRERHAVRPPVEHNWSLSGSG------------ 466
            LVPKLSVGLPGS   + SS++DQSK +RRERHAVRPPV+HNWSL GS             
Sbjct: 429  LVPKLSVGLPGS-PEKVSSSTDQSKSLRRERHAVRPPVQHNWSLPGSNDCMKPPQIFQHE 487

Query: 467  ----------ADIPVNKVRTYGDLRNVLMKRIFLSALHFRINTRYKSSNPPFTSVEMDHS 516
                        IPVNKVRTYGDLRNVLMKRIFLSALHFRINTRYKSSNPPFTS+E+DHS
Sbjct: 488  LLQHFSYNMFCKIPVNKVRTYGDLRNVLMKRIFLSALHFRINTRYKSSNPPFTSIELDHS 547

Query: 517  DSGREGCTVTTLTVTAEPKNWQSAVRVAVQEVRRLKEFGVTNGELTRYMDALLKDSEHLA 576
            DSGREGCTVTTLTVTAEPKNWQSA++VAVQEVRRLKEFGVT GELTRYMDALLKDSEHLA
Sbjct: 548  DSGREGCTVTTLTVTAEPKNWQSAIKVAVQEVRRLKEFGVTKGELTRYMDALLKDSEHLA 607

Query: 577  AMIDNISSVDNLDFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISD 636
            AMIDN+SSVDNL+FIMESDALGH VMDQRQGH SLVAVAGT+TLEEVNSIGA+VLEFISD
Sbjct: 608  AMIDNVSSVDNLEFIMESDALGHIVMDQRQGHESLVAVAGTVTLEEVNSIGAKVLEFISD 667

Query: 637  FGRPSAPVPAAIVACVPKKVHIDGIGETEFKISPNEIVDAIKSGMEEPIEAEPELEVPKE 696
            FGRP+AP+PAAIVACVP KVHIDG+GE EFKISP+EI  AIKSG+EEPIEAEPELEVPKE
Sbjct: 668  FGRPTAPLPAAIVACVPNKVHIDGVGEAEFKISPSEITTAIKSGLEEPIEAEPELEVPKE 727

Query: 697  LISASELEELKLRCRPSFIPPRPELNVTKVHDKESGITQLRLSNGIPINYKISKSEAQGG 756
            LIS S+LEEL+L+ RPSF+P  PE+N+ K HD+E+GITQ RLSNGI +NYKIS+SE++GG
Sbjct: 728  LISTSQLEELRLQRRPSFVPLLPEVNILKSHDQETGITQCRLSNGIAVNYKISRSESRGG 787

Query: 757  VMRLIVGGGRAAESSESRGAVIVGVRTLSEGGRVGKFSREQVELFCVNHLINCSLESTEE 816
            VMRLIVGGGRAAE++ES+GAVIVGVRTLSEGGRVG FSREQVELFCVNHLINCSLESTEE
Sbjct: 788  VMRLIVGGGRAAETTESKGAVIVGVRTLSEGGRVGNFSREQVELFCVNHLINCSLESTEE 847

Query: 817  FIAMEFRFTLRDNGMRAAFQLLHMVLEHSVWLDDAFDRARQLYLSYYRSIPKSLERSTAH 876
            FI MEFRFTLRDNGMRAAF+LLHMVLEHSVWLDDAFDRARQLYLSYYRSIPKSLER+TAH
Sbjct: 848  FICMEFRFTLRDNGMRAAFELLHMVLEHSVWLDDAFDRARQLYLSYYRSIPKSLERATAH 907

Query: 877  KLMLAMLNGDERFVEPTPKSLENLNLKSVKEAVMNQFVGNNMEVSIVGDFSEEEIESCIL 936
            KLM AMLNGDERFVEPTP+SLENL LKSVK+AVMNQFVG+NMEVSIVGDFSEEEIESCI+
Sbjct: 908  KLMTAMLNGDERFVEPTPQSLENLTLKSVKDAVMNQFVGDNMEVSIVGDFSEEEIESCII 967

Query: 937  DYLGTVRATNDSKREHEYSPILFRPSPSDLHFQQVFLKDTDERACAYIAGPAPNRWGFTV 996
            DYLGTVR T  S    ++ PILFRPS SDL  QQVFLKDTDERACAYIAGPAPNRWGFTV
Sbjct: 968  DYLGTVRETRGSVGAAKFVPILFRPS-SDLQSQQVFLKDTDERACAYIAGPAPNRWGFTV 1026

Query: 997  DGMDLFKSIDNTSCSFDMPPKSEESMM-LKDIEKDQQRKLRSHPLFFGITMGLLAEIINS 1055
            DG DLF+SI + +   D   KSE+ +M  KD+++D QRKLRSHPLFFGITMGLLAEIINS
Sbjct: 1027 DGKDLFESISDIAVVPDAQSKSEQPLMGRKDVQEDWQRKLRSHPLFFGITMGLLAEIINS 1086

Query: 1056 RLFTTVRDSLGLTYDVSFELNLFDRLKLGWYVISVTSPPGKVHKAVDACKNVLRGLHSNR 1115
            RLFTTVRDSLGLTYDVSFEL+LFDRL LGWYVISVTS P KV+KAVDACK+VLRGL+SN+
Sbjct: 1087 RLFTTVRDSLGLTYDVSFELSLFDRLNLGWYVISVTSTPSKVYKAVDACKSVLRGLYSNK 1146

Query: 1116 IVQRELDRAKRTLLMRHEAEIKSNAYWLGLLAHLQASSVPRKDISCIKDLMSLYEAASVE 1175
            I  RELDRAKRTLLMRHEAE+KSNAYWLGLLAHLQASSVPRKDISCIKDL SLYEAA+++
Sbjct: 1147 IAPRELDRAKRTLLMRHEAEVKSNAYWLGLLAHLQASSVPRKDISCIKDLTSLYEAATID 1206

Query: 1176 DIYLAYEQLRVDEDSLYSCIGIAGAQAGDEETASSEEESDEGYPGGVIPVGRGLSTMTRP 1235
            DIYLAYEQL++D+DSLYSCIG+AG+QAGDE T   EEE  E    GVIPVGRGLSTMTRP
Sbjct: 1207 DIYLAYEQLKIDDDSLYSCIGVAGSQAGDEITVPLEEEETENGFQGVIPVGRGLSTMTRP 1266

Query: 1236 TT 1237
            TT
Sbjct: 1267 TT 1268

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297745637|emb|CBI40802.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359491892|ref|XP_002277544.2| PREDICTED: uncharacterized protein LOC100266746 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449470360|ref|XP_004152885.1| PREDICTED: uncharacterized protein LOC101202810 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449477790|ref|XP_004155123.1| PREDICTED: uncharacterized protein LOC101224074 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224128884|ref|XP_002320445.1| predicted protein [Populus trichocarpa] gi|222861218|gb|EEE98760.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356538493|ref|XP_003537738.1| PREDICTED: uncharacterized protein LOC100809828 [Glycine max] Back     alignment and taxonomy information
>gi|356497407|ref|XP_003517552.1| PREDICTED: uncharacterized protein LOC100794716 [Glycine max] Back     alignment and taxonomy information
>gi|297795295|ref|XP_002865532.1| metalloendopeptidase [Arabidopsis lyrata subsp. lyrata] gi|297311367|gb|EFH41791.1| metalloendopeptidase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15238952|ref|NP_199054.1| Insulinase (Peptidase family M16) family protein [Arabidopsis thaliana] gi|9759475|dbj|BAB10480.1| pitrilysin [Arabidopsis thaliana] gi|23397285|gb|AAN31924.1| putative pitrilysin [Arabidopsis thaliana] gi|332007421|gb|AED94804.1| Insulinase (Peptidase family M16) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1237
TAIR|locus:21623361265 SPP "stromal processing peptid 0.620 0.606 0.763 0.0
GENEDB_PFALCIPARUM|PF14_0382 1560 PF14_0382 "metalloendopeptidas 0.072 0.057 0.380 2.1e-47
UNIPROTKB|Q8IL67 1560 PF14_0382 "Stromal-processing 0.072 0.057 0.380 2.1e-47
TIGR_CMR|SO_4022943 SO_4022 "peptidase, M16 family 0.167 0.219 0.313 1.1e-33
UNIPROTKB|P31828931 pqqL "putative zinc peptidase" 0.160 0.213 0.338 2.2e-26
TAIR|locus:2165081956 AT5G56730 [Arabidopsis thalian 0.194 0.251 0.280 2.9e-19
TIGR_CMR|DET_1429419 DET_1429 "peptidase, M16 famil 0.155 0.458 0.320 2.3e-18
TIGR_CMR|CHY_1148409 CHY_1148 "peptidase, M16 famil 0.156 0.474 0.277 4.1e-16
UNIPROTKB|Q9KRD3922 VC_1709 "Zinc protease, insuli 0.144 0.194 0.294 6e-15
TIGR_CMR|VC_1709922 VC_1709 "zinc protease, insuli 0.144 0.194 0.294 6e-15
TAIR|locus:2162336 SPP "stromal processing peptidase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2995 (1059.4 bits), Expect = 0., Sum P(2) = 0.
 Identities = 587/769 (76%), Positives = 662/769 (86%)

Query:   469 IPVNKVRTYGDLRNVLMKRIFLSALHFRINTRYKSSNPPFTSVEMDHSDSGREGCTVTTL 528
             IPV+KV+T+GDLRNVLMKRIFLSALHFRINTRYKSSNPPFTSVE+DHSDSGREGCTVTTL
Sbjct:   499 IPVSKVQTFGDLRNVLMKRIFLSALHFRINTRYKSSNPPFTSVELDHSDSGREGCTVTTL 558

Query:   529 TVTAEPKNWQSAVRVAVQEVRRLKEFGVTNGELTRYMDALLKDSEHLAAMIDNISSVDNL 588
             TVTAEP+NWQ+AV+VAVQEVRRLKEFGVT GELTRYMDALLKDSEHLAAMIDN+SSVDNL
Sbjct:   559 TVTAEPQNWQNAVKVAVQEVRRLKEFGVTRGELTRYMDALLKDSEHLAAMIDNVSSVDNL 618

Query:   589 DFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGRXXXXXXXXX 648
             DFIMESDAL HTVMDQ QGH +LVAVAGT+TLEEVN++GA+VLEFISDFGR         
Sbjct:   619 DFIMESDALSHTVMDQTQGHETLVAVAGTVTLEEVNTVGAKVLEFISDFGRPTAPLPAAI 678

Query:   649 XXXXXXXXHIDGIGETEFKISPNEIVDAIKSGMXXXXXXXXXXXXXKELISASELEELKL 708
                     H+DG+GE++F ISP+EI++++KSG+             KELIS S+L+EL L
Sbjct:   679 VACVPTKVHVDGVGESDFNISPDEIIESVKSGLLAPIEAEPELEVPKELISQSQLKELTL 738

Query:   709 RCRPSFIPPRPELNVTKVHDKESGITQLRLSNGIPINYKISKSEAQGGVMRLIVGGGRAA 768
             +  P F+P  P   +TK+HDKE+GITQLRLSNGI +NYK S +E++ GVMRLIVGGGRAA
Sbjct:   739 QRNPCFVPI-PGSGLTKLHDKETGITQLRLSNGIAVNYKKSTTESRAGVMRLIVGGGRAA 797

Query:   769 ESSESRGAVIVGVRTLSEGGRVGKFSREQVELFCVNHLINCSLESTEEFIAMEFRFTLRD 828
             E+S+S+GAV+VGVRTLSEGGRVG FSREQVELFCVNHLINCSLESTEEFIAMEFRFTLRD
Sbjct:   798 ETSDSKGAVVVGVRTLSEGGRVGDFSREQVELFCVNHLINCSLESTEEFIAMEFRFTLRD 857

Query:   829 NGMRAAFQLLHMVLEHSVWLDDAFDRARQLYLSYYRSIPKSLERSTAHKLMLAMLNGDER 888
             NGM+AAFQLLHMVLE SVWL+DAFDRARQLYLSY+RSIPKSLER+TAHKLM+AMLNGDER
Sbjct:   858 NGMQAAFQLLHMVLERSVWLEDAFDRARQLYLSYFRSIPKSLERATAHKLMIAMLNGDER 917

Query:   889 FVEPTPKSLENLNLKSVKEAVMNQFVGNNMEVSIVGDFSEEEIESCILDYLGTVRATNDS 948
             FVEPTPKSL++LNL+SVK+AVM+ FVG+NMEVSIVGDFSEEEIE CILDYLGTV+A++DS
Sbjct:   918 FVEPTPKSLQSLNLESVKDAVMSHFVGDNMEVSIVGDFSEEEIERCILDYLGTVKASHDS 977

Query:   949 KREHEYSPILFRPSPSDLHFQQVFLKDTDERACAYIAGPAPNRWGFTVDGMDLFKSIDNT 1008
              +     PILFR   + L FQQVFLKDTDERACAYIAGPAPNRWGFTVDG DLF+S+   
Sbjct:   978 AKPPGSEPILFRQPTAGLQFQQVFLKDTDERACAYIAGPAPNRWGFTVDGDDLFQSVSKL 1037

Query:  1009 SCSFDMPPKSEESMMLKDIEKDQQRKLRSHPLFFGITMGLLAEIINSRLFTTVRDSLGLT 1068
               + D   KSEE + L+  +++ Q+KLR+HPLFFG+TMGLLAEIINSRLFTTVRDSLGLT
Sbjct:  1038 PVAHDGLLKSEEQL-LEGGDRELQKKLRAHPLFFGVTMGLLAEIINSRLFTTVRDSLGLT 1096

Query:  1069 YDVSFELNLFDRLKLGWYVISVTSPPGKVHKAVDACKNVLRGLHSNRIVQRELDRAKRTL 1128
             YDVSFELNLFDRL LGWYVISVTS PGKV+KAVDACK+VLRGLHSN+I  RELDRAKRTL
Sbjct:  1097 YDVSFELNLFDRLNLGWYVISVTSTPGKVYKAVDACKSVLRGLHSNQIAPRELDRAKRTL 1156

Query:  1129 LMRHEAEIKSNAYWLGLLAHLQASSVPRKDISCIKDLMSLYEAASVEDIYLAYEQLRVDE 1188
             LMRHEAE+KSNAYWL LLAHLQASSVPRK++SCIK+L+SLYEAAS+EDIYLAY QLRVDE
Sbjct:  1157 LMRHEAELKSNAYWLNLLAHLQASSVPRKELSCIKELVSLYEAASIEDIYLAYNQLRVDE 1216

Query:  1189 DSLYSCIGIAGAQXXXXXXXXXXXXXXXXYPGGVIPVGRGLSTMTRPTT 1237
             DSLYSCIGIAGAQ                   GV+PVGRG S  TRPTT
Sbjct:  1217 DSLYSCIGIAGAQAGEEITVLSEEEEPEDVFSGVVPVGRGSSMTTRPTT 1265
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GENEDB_PFALCIPARUM|PF14_0382 PF14_0382 "metalloendopeptidase, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IL67 PF14_0382 "Stromal-processing peptidase, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4022 SO_4022 "peptidase, M16 family" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P31828 pqqL "putative zinc peptidase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TAIR|locus:2165081 AT5G56730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1429 DET_1429 "peptidase, M16 family" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1148 CHY_1148 "peptidase, M16 family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KRD3 VC_1709 "Zinc protease, insulinase family" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1709 VC_1709 "zinc protease, insulinase family" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.240.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00002974001
SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (1257 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1237
COG0612438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 6e-38
pfam00675149 pfam00675, Peptidase_M16, Insulinase (Peptidase fa 4e-21
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 2e-20
COG1025937 COG1025, Ptr, Secreted/periplasmic Zn-dependent pe 9e-14
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 5e-12
COG0612438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 5e-09
COG1026978 COG1026, COG1026, Predicted Zn-dependent peptidase 8e-06
TIGR02110696 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis 9e-06
COG0612438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 0.002
PRK15101961 PRK15101, PRK15101, protease3; Provisional 0.003
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information 
 Score =  147 bits (374), Expect = 6e-38
 Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 25/226 (11%)

Query: 180 LPSHPKLYRGQLRNGLRYLILPNKVPASRFEA-HMEIHAGSIDEEDDEQGIAHMIEHVAF 238
           LP+ P L    L NGLR +  PN  P +   +  + + AGS  E   + GIAH +EH+AF
Sbjct: 11  LPALPGLQVFTLPNGLRVITYPN--PTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAF 68

Query: 239 LGSKKR---------EKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALN 289
            G+            EKL   G + NA+T F +TV+++           D L   LD L 
Sbjct: 69  KGTTGLPSAELAEAFEKL---GGQLNAFTSFDYTVYYLSVLP-------DNLDKALDLLA 118

Query: 290 EIAFHPKFLSSRVEKERRAILSELQMMNT-IEYRVDCQLLQHLHSENKLSKRFPIGLEEQ 348
           +I  +P F    VE+E+  IL E++M     +     +LL+ L+  + L  R  +G EE 
Sbjct: 119 DILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPL-GRPILGTEES 177

Query: 349 IKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGH 394
           I+    + ++ F+++WY P N  L +VGD+D   + ++ IE  FG 
Sbjct: 178 IEAITREDLKDFYQKWYQPDNMVLVVVGDVD-AEEVVELIEKYFGD 222

Length = 438
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16) Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>gnl|CDD|233732 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>gnl|CDD|185056 PRK15101, PRK15101, protease3; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1237
PRK15101961 protease3; Provisional 100.0
PTZ004321119 falcilysin; Provisional 100.0
COG1026978 Predicted Zn-dependent peptidases, insulinase-like 100.0
KOG2019998 consensus Metalloendoprotease HMP1 (insulinase sup 100.0
COG1025937 Ptr Secreted/periplasmic Zn-dependent peptidases, 100.0
KOG0959974 consensus N-arginine dibasic convertase NRD1 and r 100.0
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
KOG0960467 consensus Mitochondrial processing peptidase, beta 100.0
TIGR02110696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
KOG0960467 consensus Mitochondrial processing peptidase, beta 100.0
KOG09611022 consensus Predicted Zn2+-dependent endopeptidase, 100.0
KOG2067472 consensus Mitochondrial processing peptidase, alph 100.0
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
PRK15101 961 protease3; Provisional 100.0
KOG2067472 consensus Mitochondrial processing peptidase, alph 99.98
PTZ00432 1119 falcilysin; Provisional 99.93
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.9
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 99.9
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.86
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 99.83
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.81
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.73
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.72
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.64
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 99.59
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.47
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 99.41
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 98.43
PF03410590 Peptidase_M44: Protein G1; InterPro: IPR005072 In 97.72
PHA03081595 putative metalloprotease; Provisional 97.48
PF03410 590 Peptidase_M44: Protein G1; InterPro: IPR005072 In 96.15
PHA03081 595 putative metalloprotease; Provisional 95.92
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 89.46
>PRK15101 protease3; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-69  Score=714.29  Aligned_cols=849  Identities=15%  Similarity=0.140  Sum_probs=585.3

Q ss_pred             CCcEEEEccCCcEEEEEECCCCCceEEEEEEEcccCCCCCCCCCCHHHHHHHHHhcCCCChh-------hHhhcCCeEEE
Q 000890          184 PKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKRE-------KLLGTGARSNA  256 (1237)
Q Consensus       184 p~~~~~~L~NGl~v~~~~~~~~~~~v~~~l~v~~Gs~~e~~~~~G~ahllehml~~Gt~~~~-------~l~~~G~~~na  256 (1237)
                      ..++..+|+|||+|++++++..+. +.+.|+|++||.+||+++.|+|||+|||+|+||++|+       .++.+||++||
T Consensus        42 ~~~~~~~L~NGL~v~l~~~~~~~~-~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA  120 (961)
T PRK15101         42 RQYQAIRLDNGMTVLLVSDPQAVK-SLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNA  120 (961)
T ss_pred             cceEEEEeCCCCEEEEEeCCCCcc-eeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccc
Confidence            456778999999999999988776 5899999999999999999999999999999999995       25789999999


Q ss_pred             EecCceEEEEEEeCCCCCCCccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHhccCC
Q 000890          257 YTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQMMNT-IEYRVDCQLLQHLHSEN  335 (1237)
Q Consensus       257 ~t~~d~t~~~~~~~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~-~~~~~~~~~~~~l~~~~  335 (1237)
                      +|+.|+|+|++++++       ++++.+|++++|++.+|.|+++++++||++|++|+++..+ +..++...+...+|++|
T Consensus       121 ~T~~d~T~y~~~~~~-------~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~h  193 (961)
T PRK15101        121 STASYRTAFYLEVEN-------DALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDGMRMAQVSAETINPAH  193 (961)
T ss_pred             eECCCceEEEEEcCH-------HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhCCCCC
Confidence            999999999999998       7899999999999999999999999999999999998654 55556666666778766


Q ss_pred             CCCCCCCCCCHHHhccc----CHHHHHHHHHhcccCCCcEEEEEccCCChHHHHHHHHHHhcCCCCCCCCCCCCCCCCcc
Q 000890          336 KLSKRFPIGLEEQIKKW----DADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENETASASTPTSSA  411 (1237)
Q Consensus       336 ~~~~~~~~G~~~~i~~i----t~e~l~~f~~~~y~p~n~~l~v~Gdi~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~p~~  411 (1237)
                      +|+ ++.+|++++|.++    ++++|++||++||+|+||+|+|+||++. +++.++++++|++|+++..+.+.. +.| .
T Consensus       194 p~~-~~~~G~~etl~~~~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~-~~l~~~~~~~F~~~~~~~~~~~~~-~~~-~  269 (961)
T PRK15101        194 PGS-RFSGGNLETLSDKPGSKLQDALVDFYQRYYSANLMKAVIYSNQPL-PELAKLAADTFGRVPNKNASVPEI-TVP-V  269 (961)
T ss_pred             Ccc-cCCCCCHHHhhcCCchHHHHHHHHHHHHhCcccceEEEEEcCCCH-HHHHHHHHHHhccCCCCCCCCCCC-CCC-C
Confidence            655 7899999999998    6999999999999999999999999996 999999999999998765332210 011 0


Q ss_pred             ccccccccccccccCCCCCCccccCCCcchhhHHhhhcccCCCCcccccccCCCCCCCCCcccccHHHHHHHHHHHHHHH
Q 000890          412 FGAMANFLVPKLSVGLPGSLSHERSSNSDQSKLIRRERHAVRPPVEHNWSLSGSGADIPVNKVRTYGDLRNVLMKRIFLS  491 (1237)
Q Consensus       412 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~l~~~ll~~l~~~  491 (1237)
                      +       .|                 .....++.......+..+.+.|..|.....+..    ....+...++++...+
T Consensus       270 ~-------~~-----------------~~~~~~~~~~~~~~~~~l~l~~~~p~~~~~~~~----~~~~~l~~ll~~~~~g  321 (961)
T PRK15101        270 V-------TD-----------------AQKGIIIHYVPAQPRKVLRVEFRIDNNSAKFRS----KTDEYISYLIGNRSPG  321 (961)
T ss_pred             C-------CH-----------------HHcCeEEEEEECCCCcEEEEEEecCCcHHHHhh----CHHHHHHHHhcCCCCC
Confidence            0       00                 000000000111344567888888764321111    0112333444443334


Q ss_pred             HHHHHHHHhhhcCCCCeeEeecccCccccccccEEEEEEEecCC---cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 000890          492 ALHFRINTRYKSSNPPFTSVEMDHSDSGREGCTVTTLTVTAEPK---NWQSAVRVAVQEVRRLKEFGVTNGELTRYMDAL  568 (1237)
Q Consensus       492 ~l~~rl~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~---~~~~a~~~i~~el~~l~~~g~t~~EL~~ak~~l  568 (1237)
                      .|.++|     +..|++|+++++++.....+.+.|.+++.+.++   +++++++.+.++|++++++|++++||+++|+.+
T Consensus       322 ~l~~~L-----~~~gla~~v~s~~~~~~~~~~g~f~i~~~~~~~~~~~~~~v~~~i~~~i~~l~~~g~~~~el~~~k~~~  396 (961)
T PRK15101        322 TLSDWL-----QKQGLAEGISAGADPMVDRNSGVFAISVSLTDKGLAQRDQVVAAIFSYLNLLREKGIDKSYFDELAHVL  396 (961)
T ss_pred             cHHHHH-----HHcCccceeeeccccccCCCceEEEEEEEcChHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            455444     356888998877653222234579999988774   789999999999999999999999999999998


Q ss_pred             HHHHHHHHHhhccCCCchhhHHHHHhhcCCCcccChHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhcCCCCCCCCCceE
Q 000890          569 LKDSEHLAAMIDNISSVDNLDFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGRPSAPVPAAI  648 (1237)
Q Consensus       569 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edv~~~a~~~l~~~~~~~~~~~~~~~~~  648 (1237)
                      ..++.  +  .+.....+....+...+     ...+...+......++.+++++|+++++. |.          |+++.+
T Consensus       397 ~~~~~--~--~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~i~~~~~~-l~----------~~n~~i  456 (961)
T PRK15101        397 DLDFR--Y--PSITRDMDYIEWLADTM-----LRVPVEHTLDAPYIADRYDPKAIKARLAE-MT----------PQNARI  456 (961)
T ss_pred             hcccc--C--CCCCChHHHHHHHHHHh-----hhCCHHHheeCchhhhcCCHHHHHHHHhh-cC----------HhHEEE
Confidence            65441  1  12222222223333332     12233445555677888999999888877 54          577888


Q ss_pred             EEeccccccccCCCCccccCC----hHHHHHHHHcccCCCCCCCCcccCCccccchhHHHHHHhccCCCCCCCCCCCcce
Q 000890          649 VACVPKKVHIDGIGETEFKIS----PNEIVDAIKSGMEEPIEAEPELEVPKELISASELEELKLRCRPSFIPPRPELNVT  724 (1237)
Q Consensus       649 ~~~~P~~~~~~~~~~~~~~~s----~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~  724 (1237)
                      +++.|+.........+...++    ++++.+.|...     .+......|+               ...|+|..-.....
T Consensus       457 ~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~-----~~~~~l~lP~---------------~n~fip~~~~~~~~  516 (961)
T PRK15101        457 WYISPQEPHNKTAYFVDAPYQVDKISEQTFADWQQK-----AQNIALSLPE---------------LNPYIPDDFSLIKA  516 (961)
T ss_pred             EEEeCCCCCCccccccCCcceeecCCHHHHHHHhcC-----CCCccCCCCC---------------CCCccCCCCeeccC
Confidence            888886432111111111111    23333444321     0111111121               22344421111111


Q ss_pred             ecccCCCCeEEEEecCCcEEEEEecCC--CCceEEEEEEECCCCCCCCcccchhhHHHHHHHhcCCcCCCCCHHHHHHHH
Q 000890          725 KVHDKESGITQLRLSNGIPINYKISKS--EAQGGVMRLIVGGGRAAESSESRGAVIVGVRTLSEGGRVGKFSREQVELFC  802 (1237)
Q Consensus       725 ~~~~~~~~i~~~~L~NGv~v~~~~~~~--~~~~v~~~l~~~~G~~~e~~~~~G~a~l~~~~l~~gg~~~~~s~~el~~~~  802 (1237)
                      .  .....++.+.++||++|++++++.  ..+.+.+.+.+.+|...+++...|++.++..++...       ..++....
T Consensus       517 ~--~~~~~p~~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll~~~-------l~e~~y~a  587 (961)
T PRK15101        517 D--KAYKHPELIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFALNDYLAGLA-------LDQLSNQA  587 (961)
T ss_pred             C--CCCCCCeEEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHHHHH-------HHHHhchH
Confidence            0  111234678899999999998752  468999999999999888888999999988877432       23333334


Q ss_pred             hcceeeeeeecCcceEEEEEEEecCcchHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHHH
Q 000890          803 VNHLINCSLESTEEFIAMEFRFTLRDNGMRAAFQLLHMVLEHSVWLDDAFDRARQLYLSYYRSIPKSLERSTAHKLMLAM  882 (1237)
Q Consensus       803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ll~~~l~~p~f~~~~~~~~k~~~~~~~~~~~~~~~~~~a~~~~~~~  882 (1237)
                      ...|++++.. +.+.+.  +++....++++.+|+++.+++.+|.|++++|+++|+.+++++++...+.  .+........
T Consensus       588 ~~aG~~~~~~-~~~g~~--i~v~g~s~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~~~--~~~~~~~~~~  662 (961)
T PRK15101        588 SVGGISFSTN-ANNGLM--VNANGYTQRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDSAEKGK--AYEQAIMPAQ  662 (961)
T ss_pred             HhcCcEEEEc-cCCCEE--EEEEecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcccC--cHHHHHHHHH
Confidence            4456666665 466666  5666677899999999999999999999999999999999998755432  1222222111


Q ss_pred             hcCCCCCC--CCCHhHHhhcCHHHHHHHHHhhccCCCeEEEEEcCCCHHHHHHHHHHhhcccCCCCCCCCcCccCCcccC
Q 000890          883 LNGDERFV--EPTPKSLENLNLKSVKEAVMNQFVGNNMEVSIVGDFSEEEIESCILDYLGTVRATNDSKREHEYSPILFR  960 (1237)
Q Consensus       883 ~~~~~~~~--~~t~~~l~~lt~e~l~~~~~~~~~~~n~~l~IvGd~d~~~v~~li~~~~g~l~~~~~~~~~~~~~~~~~~  960 (1237)
                      ...+++|.  .++.+.|+++|.++|++||+++|.+.+++++|+||++.+++.++++++++.|+.....  ......... 
T Consensus       663 ~~~~~py~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~~~~--~~~~~~~~~-  739 (961)
T PRK15101        663 MLSQVPYFERDERRKLLPSITLKDVLAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGADGTE--WWRGKDVVV-  739 (961)
T ss_pred             HHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccCCcc--cccccceEe-
Confidence            22345543  4688999999999999999999999999999999999999999999999888653211  000000000 


Q ss_pred             CCCCCCcceeEEecCCccceeEEEecCCCCCCCcccCCccccccccCCCCCCCCCCCchhhhhhhhhhhHHhhhhhcCCc
Q 000890          961 PSPSDLHFQQVFLKDTDERACAYIAGPAPNRWGFTVDGMDLFKSIDNTSCSFDMPPKSEESMMLKDIEKDQQRKLRSHPL 1040 (1237)
Q Consensus       961 ~~~~~~~~~~~~~~~~~~~a~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1237)
                       ++  .............+..+.+.+.....                                             .. .
T Consensus       740 -~~--~~~~~~~~~~~~~~~~~~~~~~~~g~---------------------------------------------~~-~  770 (961)
T PRK15101        740 -DK--KQSVNFEKAGSSTDSALAAVYVPTGY---------------------------------------------DE-Y  770 (961)
T ss_pred             -CC--CCeEEEecCCCCCCCeEEEEEEeCCC---------------------------------------------CC-H
Confidence             00  00011111111222333333311100                                             00 1


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEeeeeeccccCCceEEEEEEec---CcccHHHHHHHHHHHHHhhhhCCCC
Q 000890         1041 FFGITMGLLAEIINSRLFTTVRDSLGLTYDVSFELNLFDRLKLGWYVISVTS---PPGKVHKAVDACKNVLRGLHSNRIV 1117 (1237)
Q Consensus      1041 ~~~~~~~lL~~~l~srL~~~lRe~~GlaYsv~~~~~~~~~~~~g~~~i~~~~---~p~~~~~~~~~~~~~l~~l~~~~it 1117 (1237)
                      ...++..+|++++++|||.+||+++|++|+|++......  +.+.+.+.+.+   +|+.+++.++.+.+++.... .++|
T Consensus       771 ~~~v~~~lLg~~~ssrlf~~LRtk~qLgY~V~s~~~~~~--~~~~~~~~vqs~~~~~~~l~~~i~~f~~~~~~~l-~~lt  847 (961)
T PRK15101        771 QSSAYSSLLGQIIQPWFYNQLRTEEQLGYAVFAFPMSVG--RQWGMGFLLQSNDKQPAYLWQRYQAFFPQAEAKL-RAMK  847 (961)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhhhceEEEEEeeccC--CeeeEEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HhCC
Confidence            114567799999999999999999999999999866532  33444444433   45666666766666643322 3799


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHhcCCCCCCchhhHhhHHHHHhhcCHHHHHHHHHHh-cCCCC
Q 000890         1118 QRELDRAKRTLLMRHEAEIKSNAYWLGLLA-HLQASSVPRKDISCIKDLMSLYEAASVEDIYLAYEQL-RVDED 1189 (1237)
Q Consensus      1118 ~~ELe~aK~~l~~~~~~~~~s~~~~~~~l~-~~~~~~l~~~~~~~~~~~~~~l~~vT~edv~~~a~~~-l~~~~ 1189 (1237)
                      ++||+++|+.++.++....++....+..+. .+..++++   ++...++.+.|++||.+||++++++| +.++.
T Consensus       848 ~eE~~~~k~~l~~~~~~~~~sl~~~a~~~~~~i~~~~~~---fd~~~~~~~~i~~vT~edv~~~~~~~~~~~~~  918 (961)
T PRK15101        848 PEEFAQYQQALINQLLQAPQTLGEEASRLSKDFDRGNMR---FDSRDKIIAQIKLLTPQKLADFFHQAVIEPQG  918 (961)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCC---cChHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Confidence            999999999999999888888777776663 33334444   47788999999999999999999998 44444

>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PHA03081 putative metalloprotease; Provisional Back     alignment and domain information
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PHA03081 putative metalloprotease; Provisional Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1237
3amj_C437 The Crystal Structure Of The Heterodimer Of M16b Pe 7e-11
3ami_A445 The Crystal Structure Of The M16b Metallopeptidase 8e-11
3hdi_A421 Crystal Structure Of Bacillus Halodurans Metallo Pe 2e-10
1sqb_A480 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 2e-09
1bgy_A446 Cytochrome Bc1 Complex From Bovine Length = 446 2e-09
1qcr_A446 Crystal Structure Of Bovine Mitochondrial Cytochrom 2e-09
3go9_A492 Predicted Insulinase Family Protease From Yersinia 4e-09
1bcc_A446 Cytochrome Bc1 Complex From Chicken Length = 446 2e-08
3cwb_A446 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 2e-08
1q2l_A939 Crystal Structure Of Pitrilysin Length = 939 3e-08
1hr6_B443 Yeast Mitochondrial Processing Peptidase Length = 4 8e-08
1hr7_B443 Yeast Mitochondrial Processing Peptidase Beta-E73q 2e-07
3qz2_A990 The Structure Of Cysteine-Free Human Insulin Degrad 9e-07
3tuv_A1019 Crystal Structure Of Insulysin With Bound Atp Lengt 2e-06
3p7l_A978 Rat Insulin Degrading Enzyme (Insulysin) Length = 9 2e-06
3cww_A990 Crystal Structure Of Ide-Bradykinin Complex Length 2e-06
3e4a_A1019 Human Ide-Inhibitor Complex At 2.6 Angstrom Resolut 2e-06
3e4z_A990 Crystal Structure Of Human Insulin Degrading Enzyme 2e-06
2wby_A990 Crystal Structure Of Human Insulin-Degrading Enzyme 2e-06
3hgz_A969 Crystal Structure Of Human Insulin-Degrading Enzyme 2e-06
2jg4_A990 Substrate-Free Ide Structure In Its Closed Conforma 2e-06
2g47_A990 Crystal Structure Of Human Insulin-Degrading Enzyme 5e-06
3eoq_A406 The Crystal Structure Of Putative Zinc Protease Bet 1e-05
3p7o_A1019 Rat Insulin Degrading Enzyme (Insulysin) E111f Muta 1e-05
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 437 Back     alignment and structure 
Iteration: 1

 Score = 66.6 bits (161), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 33/214 (15%)
Query: 191 LRNGLRYLILPN-KVPASRFEAHMEIH-AGSIDEEDDEQGIAHMIEHVAFLGSKK----- 243
           L NGL+ ++  + + P      HM  +  GS+DE     G+AH +EH+ F G+K      
Sbjct: 12  LPNGLKVVVREDHRAPTL---VHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGE 68
Query: 244 -REKLLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRV 302
             +++   G R NA+T   +T ++   P+       D++ L  D +  +    +     +
Sbjct: 69  FSKRVAAMGGRDNAFTTRDYTAYYQQVPS---SRLSDVMGLEADRMANLVVDDELFKKEI 125
Query: 303 E---KERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFP-IGLEEQIKKWDADKIR 358
           +   +ERR    +       E  +    + H +       R P IG    I+   A  +R
Sbjct: 126 QVIAEERRWRTDDKPRSKAYEALMAASYVAHPY-------RVPVIGWMNDIQNMTAQDVR 178
Query: 359 KFHERWYFPANATLYIVGDIDNVSKTIDQIEAVF 392
            +++RWY P NAT+ +VGD+++        EAVF
Sbjct: 179 DWYKRWYGPNNATVVVVGDVEH--------EAVF 204
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit From Sphingomonas Sp. A1 Length = 445 Back     alignment and structure
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase Length = 421 Back     alignment and structure
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 480 Back     alignment and structure
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine Length = 446 Back     alignment and structure
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 446 Back     alignment and structure
>pdb|3GO9|A Chain A, Predicted Insulinase Family Protease From Yersinia Pestis Length = 492 Back     alignment and structure
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken Length = 446 Back     alignment and structure
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 446 Back     alignment and structure
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin Length = 939 Back     alignment and structure
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase Length = 443 Back     alignment and structure
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 443 Back     alignment and structure
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading Enzyme Length = 990 Back     alignment and structure
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp Length = 1019 Back     alignment and structure
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) Length = 978 Back     alignment and structure
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex Length = 990 Back     alignment and structure
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution Length = 1019 Back     alignment and structure
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In Complex With Insulin-Like Growth Factor Ii Length = 990 Back     alignment and structure
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Insulin Length = 990 Back     alignment and structure
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amylin Length = 969 Back     alignment and structure
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation Length = 990 Back     alignment and structure
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amyloid-Beta (1-40) Length = 990 Back     alignment and structure
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta- Subunit From Thermus Thermophilus Hb8 Length = 406 Back     alignment and structure
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With Two Bound Peptides Length = 1019 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1237
3go9_A492 Insulinase family protease; IDP00573, structural g 1e-63
3go9_A492 Insulinase family protease; IDP00573, structural g 7e-09
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 2e-32
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 5e-09
3eoq_A406 Putative zinc protease; two similar domains of bet 6e-31
3eoq_A406 Putative zinc protease; two similar domains of bet 6e-09
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 1e-30
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 5e-08
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 7e-29
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 4e-06
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 7e-29
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 5e-07
3gwb_A434 Peptidase M16 inactive domain family protein; pept 2e-28
3gwb_A434 Peptidase M16 inactive domain family protein; pept 4e-19
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 2e-28
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 3e-05
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 3e-27
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 5e-07
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 1e-26
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 8e-04
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 1e-26
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 8e-17
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 5e-26
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 2e-04
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 1e-25
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 1e-04
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 8e-24
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 5e-14
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 2e-21
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 5e-21
3s5m_A1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 7e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
3ih6_A197 Putative zinc protease; bordetella pertussis toham 1e-05
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Back     alignment and structure
 Score =  223 bits (571), Expect = 1e-63
 Identities = 86/533 (16%), Positives = 167/533 (31%), Gaps = 79/533 (14%)

Query: 180 LPSHPKLYRGQLRNGLRYLILPN-KVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAF 238
           L   P   +G+L NG  + +L   + P+ R E  + ++ GS+ E   E G AH++  +A 
Sbjct: 20  LQPDPAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLAL 79

Query: 239 LGSKKREK----------LLGTGARSNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDAL 288
           + S               +        A T +  T++ +  P     +  DLL   L  L
Sbjct: 80  MSSASFTPAQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPN----NRPDLLKDALAWL 135

Query: 289 NEIAFHPKFLSSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQ 348
           ++ A +       V          +         +     ++    + L    P   +  
Sbjct: 136 SDTAGNLAVSEQTVNAALNTATDPIATF---PQNIQEPWWRYRLKGSSLIGHDPG--QPV 190

Query: 349 IKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENETASASTPT 408
            +  D +K+++F+++WY P   TLY+VG++D       QI   F     +    +A    
Sbjct: 191 TQPVDVEKLKQFYQQWYTPDAMTLYVVGNVD-SRSIAAQISKAFSELKGKRTAPAAVATL 249

Query: 409 SSAFGAMANFLVPKLSVGLPGSLSHERSSNSDQSKLIRRERHAVRPPVEHNWSLSGSGAD 468
           +       + +  + +                               +   W       D
Sbjct: 250 APLPPEPVSLMNEQAAQ----------------------------DTLSLMW-------D 274

Query: 469 IPVNKVRTYGDLRNVLMKRIFLSALHFRINTRYKSSNPPFTSVEMDHSDSGREGCTVTTL 528
            P + ++    L       +   AL + I    + +N     +  D     +       +
Sbjct: 275 TPWHPIQDSMALSRYWRSDLAREALFWHIKQVLEKNNQKNLKLGFDCRVQYQRA--QCAI 332

Query: 529 TVTAEPKNWQSAVRVAVQEVRRLKEFGVTNGELTRYMDALLKDSEHLAAMIDNISSVDNL 588
            +    +N  + +    +E+  L+  G++  E    M         L A      +   +
Sbjct: 333 HLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILM 392

Query: 589 DFIMESDALGHTVMDQRQGHASLVAVAGTITLEEVNSIGAEVLEFISDFGRPSAPVPAAI 648
              + S   G   +   Q      A    +TL E+N    + L                +
Sbjct: 393 SQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLS-----------QDTTL 441

Query: 649 VACVPKKVHIDGIGETEFKISPNEIVDAIKSGMEEPIEAEPELEVPKELISAS 701
           V   PK       GE E  +     +  I +G+  P     E   P E +  +
Sbjct: 442 VLMQPK-------GEPEVNVKA---LQEIYNGIMAPQTVAEEEVAPAEAVETA 484
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445 Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Length = 1193 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Length = 197 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1237
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 5e-26
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 4e-09
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 8e-26
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 3e-04
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 7e-24
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 2e-09
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 2e-21
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 1e-05
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 3e-21
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 4e-05
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 3e-20
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 2e-04
d1q2la1229 d.185.1.1 (A:504-732) Protease III {Escherichia co 5e-19
d1q2la1229 d.185.1.1 (A:504-732) Protease III {Escherichia co 2e-10
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 2e-17
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 3e-04
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 1e-12
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 3e-05
d1q2la2228 d.185.1.1 (A:733-960) Protease III {Escherichia co 0.003
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  105 bits (263), Expect = 5e-26
 Identities = 52/232 (22%), Positives = 85/232 (36%), Gaps = 10/232 (4%)

Query: 180 LPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFL 239
           L S P+    QL NGLR     +  P       + I AGS  E +   G  + +EH+AF 
Sbjct: 7   LQSVPETQVSQLDNGLRVASEQSSQPTCTVG--VWIDAGSRYESEKNNGAGYFVEHLAFK 64

Query: 240 GSKKREKLLGTGARSNAYTDFHHTVFHIHSPTYTKDS---DEDLLPLVLDALNEIAFHPK 296
           G+K R       A           +    +  +T          LP  ++ L +I  +  
Sbjct: 65  GTKNRPG----NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCS 120

Query: 297 FLSSRVEKERRAILSELQMMNTIEYRVDCQLLQHLHSENKLSKRFPIGLEEQIKKWDADK 356
              S++EKER  IL ELQ  +T    V    L     +     +   G  E ++K     
Sbjct: 121 LEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRAD 180

Query: 357 IRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENETASASTPT 408
           + ++  R Y      L   G ++   + +D  +  F       +  +  T +
Sbjct: 181 LTEYLSRHYKAPRMVLAAAGGLE-HRQLLDLAQKHFSGLSGTYDEDAVPTLS 231
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Length = 229 Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Length = 229 Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Length = 228 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1237
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 100.0
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 100.0
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 100.0
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 100.0
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 100.0
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 100.0
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 100.0
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.97
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 99.97
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.97
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.97
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.94
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.91
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.9
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.89
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 99.88
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.87
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 99.86
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.84
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.76
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 99.73
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.64
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 99.64
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 99.59
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.57
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 99.5
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 99.42
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.37
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 99.16
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 98.77
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 98.69
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 98.64
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 98.41
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 97.72
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 97.04
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 96.34
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 91.19
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.7e-38  Score=270.11  Aligned_cols=211  Identities=27%  Similarity=0.373  Sum_probs=190.1

Q ss_pred             CCCCCCCEEEECCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHH------HHHHCCCE
Q ss_conf             999997289980599599997779998448999998045789999999899999999843997736------58612971
Q 000890          180 LPSHPKLYRGQLRNGLRYLILPNKVPASRFEAHMEIHAGSIDEEDDEQGIAHMIEHVAFLGSKKRE------KLLGTGAR  253 (1237)
Q Consensus       180 ~~~~p~~~~~~L~NGl~v~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~G~ahllehml~~Gt~~~~------~l~~~G~~  253 (1237)
                      ....|++++++|+|||+|++..++.+ . +.+.+++++|+++|+.++.|++|+++||+++|+.++.      .+...|+.
T Consensus         7 ~~~~p~~~~~~L~NGl~V~~~~~~~~-~-~~i~l~~~~Gs~~e~~~~~G~a~ll~~~~~~g~~~~~~~~~~~~l~~~g~~   84 (232)
T d1ppja1           7 LQSVPETQVSQLDNGLRVASEQSSQP-T-CTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAH   84 (232)
T ss_dssp             HTTSCCCEEEECTTSCEEEEEECCCS-E-EEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCE
T ss_pred             CCCCCCCEEEECCCCCEEEEECCCCC-E-EEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
T ss_conf             34688767999999999999769999-7-999999834454558887641899987774177521101578887653023


Q ss_pred             EEEEECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHC
Q ss_conf             7798247559999992799888763639999999999871999994899999999999999405-948789999999740
Q 000890          254 SNAYTDFHHTVFHIHSPTYTKDSDEDLLPLVLDALNEIAFHPKFLSSRVEKERRAILSELQMMN-TIEYRVDCQLLQHLH  332 (1237)
Q Consensus       254 ~na~t~~d~t~~~~~~~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~-~~~~~~~~~~~~~l~  332 (1237)
                      ++++++.|.+.|++.+++       ++++.+|+++++++.+|.|++++|+++|..+.+++++.. ++...+...+...+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~-------~~l~~~l~ll~~~l~~p~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (232)
T d1ppja1          85 LNAYSTREHTAYYIKALS-------KDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAF  157 (232)
T ss_dssp             EEEEECSSCEEEEEEEEG-------GGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHEECCCHH-------HHHHHHHHHHHHHHHHCCCCHHHHHHHHCEEECCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             233356314311424206-------7799999999998653000577763322111011145554588999999988752


Q ss_pred             CCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             489999999999988862467999999998104578719999926998578999999883699999988
Q 000890          333 SENKLSKRFPIGLEEQIKKWDADKIRKFHERWYFPANATLYIVGDIDNVSKTIDQIEAVFGHTGNENET  401 (1237)
Q Consensus       333 ~~~~~~~~~~~G~~~~i~~~t~edl~~f~~~~y~p~n~~l~vvGdi~~~~~~~~~i~~~f~~~~~~~~~  401 (1237)
                      ++++++ ++.+|+.++|++++.++|++||++||+|+||+|+|+||+++ ++++++++++||.|++....
T Consensus       158 ~~~p~~-~~~~g~~~~l~~it~e~l~~f~~~~y~~~n~~l~i~Gd~~~-~~l~~l~~~~fg~l~~~~~~  224 (232)
T d1ppja1         158 QGTPLA-QSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEH-RQLLDLAQKHFSGLSGTYDE  224 (232)
T ss_dssp             TTSGGG-SCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCH-HHHHHHHHHHHTTSCSCCCS
T ss_pred             CCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCH-HHHHHHHHHHHHCCCCCCCC
T ss_conf             478654-56778999998776899999999728857779999909999-99999999997458999999
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure