Citrus Sinensis ID: 000920
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1223 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C5U2 | 1176 | Histidine kinase 2 OS=Ara | yes | no | 0.932 | 0.970 | 0.608 | 0.0 | |
| Q9C5U1 | 1036 | Histidine kinase 3 OS=Ara | no | no | 0.747 | 0.882 | 0.586 | 0.0 | |
| Q9C5U0 | 1080 | Histidine kinase 4 OS=Ara | no | no | 0.748 | 0.848 | 0.533 | 0.0 | |
| Q54YZ9 | 2062 | Hybrid signal transductio | yes | no | 0.415 | 0.246 | 0.334 | 6e-76 | |
| P59342 | 918 | Signal transduction histi | yes | no | 0.421 | 0.561 | 0.306 | 5e-67 | |
| P0AEC5 | 918 | Signal transduction histi | N/A | no | 0.421 | 0.561 | 0.306 | 8e-67 | |
| P0AEC6 | 918 | Signal transduction histi | yes | no | 0.421 | 0.561 | 0.306 | 8e-67 | |
| P0AEC7 | 918 | Signal transduction histi | N/A | no | 0.421 | 0.561 | 0.306 | 8e-67 | |
| P48027 | 907 | Sensor protein GacS OS=Ps | N/A | no | 0.401 | 0.541 | 0.284 | 1e-55 | |
| O14002 | 2310 | Peroxide stress-activated | yes | no | 0.430 | 0.228 | 0.265 | 2e-47 |
| >sp|Q9C5U2|AHK2_ARATH Histidine kinase 2 OS=Arabidopsis thaliana GN=AHK2 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1417 bits (3669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/1182 (60%), Positives = 893/1182 (75%), Gaps = 41/1182 (3%)
Query: 42 LAFLWLLGFVIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALA 101
L FL L G +++ + FL +G ++E SC + ++ +H NV+ +++H L
Sbjct: 30 LFFLILCGSLVIVLVMFLR-------LGRSQKEETDSCNGEEKVLYRHQNVTRSEIHDLV 82
Query: 102 TLFSESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQ--KQSIWLAEDVKQMDQ 159
+LFS+SDQ+ S +C +E GM + GITC++ V S KQE + ++ L +
Sbjct: 83 SLFSDSDQVTSFECHKESSPGMWTNYGITCSLSV-RSDKQETRGLPWNLGLGHSISST-S 140
Query: 160 CPVEDVNVSWKLDHSVLKNISHARTWSNCTRDHFKILSFCLFKGCWWFICGMVVICIIVS 219
C ++ +L+ + ++ + S+ + WW + V++C +
Sbjct: 141 CMCGNL-------EPILQQPENLEEENHEEGLEQGLSSY--LRNAWWCLILGVLVCHKIY 191
Query: 220 LLFKSRRNHKHKHDQLQPVSQQRQMILQQKQQQQTPHPPRSAGKWRMKILVVFVLLGIAI 279
+ R + + LQ + + +KQQQ+ R AG+WR IL++ +L G++
Sbjct: 192 VSHSKARGERKEKVHLQ------EALAPKKQQQRAQTSSRGAGRWRKNILLLGILGGVSF 245
Query: 280 SVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSA 339
SVW FW E++ ++R+ETLA+MCDERAR+LQDQFNVS+NHVHAL+ILVSTFHH K PSA
Sbjct: 246 SVWWFWDTNEEIIMKRRETLANMCDERARVLQDQFNVSLNHVHALSILVSTFHHGKIPSA 305
Query: 340 VDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCT 399
+DQ+TF EYTERT FERPLTSGVAYALKV HSERE+FEK+HGW IKKMETEDQT+VQDC
Sbjct: 306 IDQRTFEEYTERTNFERPLTSGVAYALKVPHSEREKFEKEHGWAIKKMETEDQTVVQDCV 365
Query: 400 PENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLK 459
PEN DPAP+QDEYAPVIF+QETVSHIVS+DMMSG+EDRENILRARASGKGVLT PFKLLK
Sbjct: 366 PENFDPAPIQDEYAPVIFAQETVSHIVSVDMMSGEEDRENILRARASGKGVLTSPFKLLK 425
Query: 460 SNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVN 519
SNHLGVVLTFAVY+T LP DAT EQR+EAT+GYLGASYD+PSLVEKLLHQLASKQTI V+
Sbjct: 426 SNHLGVVLTFAVYDTSLPPDATEEQRVEATIGYLGASYDMPSLVEKLLHQLASKQTIAVD 485
Query: 520 VYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIG 579
VYDTTN S I MYG ++ D +S+LDFGDPSR HEMHCRFK K P+PWTAI SI
Sbjct: 486 VYDTTNTSGLIKMYGSEIGDISEQHISSLDFGDPSRNHEMHCRFKHKLPIPWTAITPSIL 545
Query: 580 VVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNG 639
V+VIT LVG+I + AINRIA VE D +M ELKARAEAAD+AKSQFLATVSHEIRTPMNG
Sbjct: 546 VLVITFLVGYILYEAINRIATVEEDCQKMRELKARAEAADIAKSQFLATVSHEIRTPMNG 605
Query: 640 VLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHD 699
VLGML+MLMDT+LDA Q+DYAQTAH SGKDL SLIN+VLDQAKIESGRLE E VPF +
Sbjct: 606 VLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVLDQAKIESGRLELENVPFDMRF 665
Query: 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHI 759
+LDNV SL S KAN+KGIELA+YVS +VP+VV+GDP RFRQIITNLVGNSIKFTQ++GHI
Sbjct: 666 ILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDPSRFRQIITNLVGNSIKFTQERGHI 725
Query: 760 FVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNT 819
F+SVHLAD+V+ + ++D VL++ L +S + T+SGFP V+ W SW+NFK +T
Sbjct: 726 FISVHLADEVKEPLTIEDAVLKQRLALGCSESGE---TVSGFPAVNAWGSWKNFKTCYST 782
Query: 820 NTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVE 879
+ + +IKLLVTVEDTGVGIP++AQ RIFTPFMQADSSTSRTYGGTGIGLSIS+ LVE
Sbjct: 783 ES-QNSDQIKLLVTVEDTGVGIPVDAQGRIFTPFMQADSSTSRTYGGTGIGLSISKRLVE 841
Query: 880 LMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIR 939
LM GE+GFVSEPG GSTFSFT F + E N+ K +++ + EF GLRALVID+++IR
Sbjct: 842 LMQGEMGFVSEPGIGSTFSFTGVFGKAETNTSITKLERFDLAIQEFTGLRALVIDNRNIR 901
Query: 940 AEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHY 999
AEVTRY L+RL ++ + +S+++AC TC S L LA++LIDKD W+KE VL
Sbjct: 902 AEVTRYELRRLGISADIVSSLRMAC-----TCCISKLENLAMILIDKDAWNKEEFSVLDE 956
Query: 1000 MLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQE 1058
+ + + + +R +PKIFLLATS + T+R E+KS G++ ++ KPLR+SVLI C QE
Sbjct: 957 LFTRSK----VTFTR-VPKIFLLATSATLTERSEMKSTGLIDEVVIKPLRMSVLICCLQE 1011
Query: 1059 DPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAV 1118
+ KK Q R++ +LGHLL+ KQILVVDDN+VNRRVAEGALKK+GAIVTCV+ G+AA+
Sbjct: 1012 TLVNGKKRQPNRQRRNLGHLLREKQILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAAL 1071
Query: 1119 DKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVP 1178
L PPHNFDACFMDLQMPEMDGF+AT ++R LE EIN++IASGE SAEMF WHVP
Sbjct: 1072 AMLKPPHNFDACFMDLQMPEMDGFEATRRVRELEREINKKIASGEVSAEMFCKFSSWHVP 1131
Query: 1179 ILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
ILAMTADVIQA++E+CMKCGMD YVSKPFE+E LYTAVARFF
Sbjct: 1132 ILAMTADVIQATHEECMKCGMDGYVSKPFEEEVLYTAVARFF 1173
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Cytokinins (CK) receptor related to bacterial two-component regulators. Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. In the presence of cytokinin, feed phosphate to phosphorelay-integrating histidine phosphotransfer protein (HPt) and activates subsequent cascade. Involved in meristems establishment in seedlings. Redundant negative regulator of drought and salt stress responses and abscisic acid (ABA) signaling. Together with AHK3, plays a negative regulatory role in cold stress signaling via inhibition of ABA response, occurring independently of the cold acclimation pathway. Redundant positive regulator of cytokinin signaling that regulates many development process including seed germination, cell division, seed size, chlorophyll retention during leaf senescence, root repression and shoot promotion. Involved in alkamides (e.g. N-isobutyl decanamide) and N-acylethanolamides (NAE) signaling that control meristematic activity and differentiation processes during plant development. Contributes to vascular bundle formation and secondary growth in a cytokinin-dependent manner, probably by promoting the maintenance of mitotic activity and/or identity of procambial cells. Together with AHK4, required for growth and reproduction promotion stimulated by the endophytic fungus Piriformospora indica in a trans-zeatin-dependent manner. Required by the cytokinin-dependent flower development regulation pathway. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 3EC: .EC: 3 |
| >sp|Q9C5U1|AHK3_ARATH Histidine kinase 3 OS=Arabidopsis thaliana GN=AHK3 PE=1 SV=1 | Back alignment and function description |
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Score = 1087 bits (2812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/953 (58%), Positives = 698/953 (73%), Gaps = 39/953 (4%)
Query: 280 SVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSA 339
S+W FW + +RKETLASMCDERARMLQDQFNVSMNHV A++IL+STFHH K PSA
Sbjct: 107 SIWTFWYFSSQAMEKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSA 166
Query: 340 VDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQ--D 397
+DQ+TF EYT+RT+FERPLTSGVAYA++VLHSERE+FE+Q GW I+KM + +Q V D
Sbjct: 167 IDQRTFSEYTDRTSFERPLTSGVAYAMRVLHSEREEFERQQGWTIRKMYSLEQNPVHKDD 226
Query: 398 CTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKL 457
E L+P+PVQ+EYAPVIF+Q+TVSH+VS+DM+SGKEDREN+LRAR+SGKGVLT PF L
Sbjct: 227 YDLEALEPSPVQEEYAPVIFAQDTVSHVVSLDMLSGKEDRENVLRARSSGKGVLTAPFPL 286
Query: 458 LKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIV 517
+K+N LGV+LTFAVY DLP +ATP++RIEAT GYLG +D+ SLVE LL QLASKQTI+
Sbjct: 287 IKTNRLGVILTFAVYKRDLPSNATPKERIEATNGYLGGVFDIESLVENLLQQLASKQTIL 346
Query: 518 VNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINAS 577
VNVYD TN S PI+MYG +V+ GL RVS L FGDP RKHEM CRFKQKPP P ++ S
Sbjct: 347 VNVYDITNHSQPISMYGTNVSADGLERVSPLIFGDPLRKHEMRCRFKQKPPWPVLSMVTS 406
Query: 578 IGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPM 637
G++VI LLV HI HA ++RI +VE D +M +LK +AEAADVAKSQFLATVSHEIRTPM
Sbjct: 407 FGILVIALLVAHIIHATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATVSHEIRTPM 466
Query: 638 NGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHL 697
NGVLGML MLMDTELD Q DY +TA SGK L+SLIN+VLDQAKIESG+LE E V F L
Sbjct: 467 NGVLGMLHMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEEVRFDL 526
Query: 698 HDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKG 757
+LD+VLSLFSSK+ QKG+ELA+Y+SDRVP+++IGDPGRFRQI+TNL+GNSIKFT+ KG
Sbjct: 527 RGILDDVLSLFSSKSQQKGVELAVYISDRVPDMLIGDPGRFRQILTNLMGNSIKFTE-KG 585
Query: 758 HIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLD 817
HIFV+VHL D++ +D + +S TLSG PV DR +SWENFK
Sbjct: 586 HIFVTVHLVDELFESIDGETASSPES-------------TLSGLPVADRQRSWENFKAFS 632
Query: 818 NTNTME---QLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSIS 874
+ I L+V+VEDTGVGIP+EAQ RIFTPFMQ S SRT+GGTGIGLSIS
Sbjct: 633 SNGHRSFEPSPPDINLIVSVEDTGVGIPVEAQSRIFTPFMQVGPSISRTHGGTGIGLSIS 692
Query: 875 RCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVID 934
+CLV LM GEIGF S P GSTF+FT F+ G + + + K P SEFRG++A+V+D
Sbjct: 693 KCLVGLMKGEIGFSSTPKVGSTFTFTAVFSNGMQPA-ERKNDNNQPIFSEFRGMKAVVVD 751
Query: 935 DKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIG 994
+ RA+V+ YH QRL + V V ++ A YL +T + ++LI++++W++E
Sbjct: 752 HRPARAKVSWYHFQRLGIRVEVVPRVEQALHYLKIGTTT-----VNMILIEQEIWNREAD 806
Query: 995 LVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGI--VTLLTKPLRLSVL 1052
+ ++ +K L +S PK+ LLA S+ E+ E GI ++ KPLR S+L
Sbjct: 807 DFI-----KKLQKDPLFLS---PKLILLANSV-ESSISEALCTGIDPPIVIVKPLRASML 857
Query: 1053 IGCFQEDPESSKKLQQKRKKPS---LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVT 1109
Q + + K P L +LL G++IL+VDDN VN RVA GALKK+GA V
Sbjct: 858 AATLQRGLGIGIREPPQHKGPPALILRNLLLGRKILIVDDNNVNLRVAAGALKKYGADVV 917
Query: 1110 CVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMF 1169
C + G A+ L PPH FDACFMD+QMPEMDGF+AT +IR +E E+N++I +GE+
Sbjct: 918 CAESGIKAISLLKPPHEFDACFMDIQMPEMDGFEATRRIRDMEEEMNKRIKNGEALIVEN 977
Query: 1170 GNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
GN WH+P+LAMTADVIQA++E+C+KCGMD YVSKPFE EQLY V+RFF S
Sbjct: 978 GNKTSWHLPVLAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFNS 1030
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Cytokinins (CK) receptor related to bacterial two-component regulators. Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. In the presence of cytokinin, feed phosphate to phosphorelay-integrating histidine phosphotransfer protein (HPt) and activates subsequent cascade. Involved in meristems establishment in seedlings. Redundant negative regulator of drought and salt stress responses and abscisic acid (ABA) signaling. Together with AHK2, plays a negative regulatory role in cold stress signaling via inhibition of ABA response, occurring independently of the cold acclimation pathway. Redundant positive regulator of cytokinin signaling that regulates many development process including seed germination, cell division, seed size, chlorophyll retention during leaf senescence, root repression and shoot promotion. Can interact with isoprenoid-type cytokinins trans-zeatin (tZ and tZR), cis-zeatin (cZ), dihydrozeatin (DZ), buta-2,3-dienyladenine (HA-8), penta-2,3-dienyladenine (HA-1), 4-methyl-penta-2,3-dienyladenine (HA-10), 4-hydroxy-2-butynyladenine (RM1), 2-propynyladenine (RM3), 2-butynyladenine (RM6), and cytokinin ribosides and ribotides. Together with AHK4, involved in the cytokinin-dependent responses to Pi starvation and sucrose stresses. Promotes cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator ARR2. Involved in alkamides (e.g. N-isobutyl decanamide) and N-acylethanolamides (NAE) signaling that control meristematic activity and differentiation processes during plant development. Contributes to vascular bundle formation and secondary growth in a cytokinin-dependent manner, probably by promoting the maintenance of mitotic activity and/or identity of procambial cells. Plays a role in the cytokinin-mediated repression of the iron uptake pathway. Required by the cytokinin-dependent flower development regulation pathway. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 3 EC: . EC: 3 |
| >sp|Q9C5U0|AHK4_ARATH Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1 | Back alignment and function description |
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Score = 993 bits (2568), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/981 (53%), Positives = 680/981 (69%), Gaps = 65/981 (6%)
Query: 267 KILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAI 326
K L++++++ IS ++ + + +RR+E L SMCD+RARMLQDQF+VS+NHVHALAI
Sbjct: 129 KALILWIIIVGFISSGIYQWMDDANKIRREEVLVSMCDQRARMLQDQFSVSVNHVHALAI 188
Query: 327 LVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKK 386
LVSTFH+ K+PSA+DQ+TF EYT RTAFERPL SGVAYA KV++ ERE FE+QH W IK
Sbjct: 189 LVSTFHYHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKT 248
Query: 387 METEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARAS 446
M+ + P+PV+DEYAPVIFSQ++VS++ S+DMMSG+EDRENILRAR +
Sbjct: 249 MDRGE-------------PSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARET 295
Query: 447 GKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKL 506
GK VLT PF+LL+++HLGVVLTF VY + LP++ T E+RI AT GYLG ++DV SLVE L
Sbjct: 296 GKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENL 355
Query: 507 LHQLASKQTIVVNVYDTTNASAPINMYG--PDVTDTGLLRVSNLDFGDPSRKHEMHCRFK 564
L QLA Q IVV+VYD TNAS P+ MYG + D L S LDFGDP RKH+M CR+
Sbjct: 356 LGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYH 415
Query: 565 QKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQ 624
QK P+P + I LVG+I + A I +VE+D+HEM ELK RAEAADVAKSQ
Sbjct: 416 QKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQ 475
Query: 625 FLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIE 684
FLATVSHEIRTPMNG+LGML ML+DTEL + Q DYAQTA GK LI+LIN+VLD+AKIE
Sbjct: 476 FLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIE 535
Query: 685 SGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITN 744
+G+LE E VPF + +LD+VLSLFS ++ K IELA++VSD+VPE+V GD GRFRQII N
Sbjct: 536 AGKLELESVPFDIRSILDDVLSLFSEESRNKSIELAVFVSDKVPEIVKGDSGRFRQIIIN 595
Query: 745 LVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV---LEKSLNSVQHKSDKVYNTLSGF 801
LVGNS+KFT+ KGHIFV VHLA+ + + + K+ + + + + V +S YNTLSG+
Sbjct: 596 LVGNSVKFTE-KGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVSKQSS--YNTLSGY 652
Query: 802 PVVDRWKSWENFKML----DNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD 857
D SW++FK L + + + ++L+V++EDTG+GIPL AQ R+F PFMQAD
Sbjct: 653 EAADGRNSWDSFKHLVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLVAQGRVFMPFMQAD 712
Query: 858 SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGER----NSLDP 913
SSTSR YGGTGIGLSIS+CLVELM G+I F+S P GSTF FT + ++ N +
Sbjct: 713 SSTSRNYGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKK 772
Query: 914 KWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL----ACSYLSD 969
+++P S F+G++A+V+D K +RA VTRYH++RL + V V S++ A ++ +
Sbjct: 773 PNVEHLP--STFKGMKAIVVDAKPVRAAVTRYHMKRLGINVDVVTSLKTAVVAAAAFERN 830
Query: 970 TCSTSVLPQLALVLIDKDVW------DKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLA 1023
PQL ++L++KD W D EI L+ R G + PK+ L A
Sbjct: 831 GSPLPTKPQLDMILVEKDSWISTEDNDSEIRLL------NSRTNGN--VHHKSPKLALFA 882
Query: 1024 TSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPS---LGHLL 1079
T+I+ ++ D KS G T++ KPLR S++ C Q+ E K QQ + S L LL
Sbjct: 883 TNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLL 942
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
GK+ILVVDDN+VNRRVA GALKK GA V C + G+ A+ L PH FDACFMD+QMP+M
Sbjct: 943 TGKKILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQM 1002
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DGF+AT QIR +E E E+ ++ E WH+PILAMTADVI A+ E+C+K GM
Sbjct: 1003 DGFEATRQIRMMEKETKEK-----TNLE-------WHLPILAMTADVIHATYEECLKSGM 1050
Query: 1200 DDYVSKPFEDEQLYTAVARFF 1220
D YVSKPFE+E LY +VA+ F
Sbjct: 1051 DGYVSKPFEEENLYKSVAKSF 1071
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Cytokinins (CK) receptor related to bacterial two-component regulators. Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. In the presence of cytokinin, feed phosphate to phosphorelay-integrating histidine phosphotransfer protein (HPt) and activates subsequent cascade. In the absence of cytokinin, removes phosphate from HPt proteins, decreasing the system phosphoload. Involved in meristems establishment in seedlings. Acts as a redundant negative regulator of drought and salt stress responses, and abscisic acid (ABA) signaling in a cytokinin-dependent manner. Required to set vascular asymmetric cell divisions that establish phloem and procambium cell lines. Redundant positive regulator of cytokinin signaling that regulates many development process including seed germination, cell division, seed size, chlorophyll retention during leaf senescence, root repression and shoot promotion. Can interact with isoprenoid-type cytokinins trans-zeatin (tZ and tZR), isopentenyladenine (iP), and isopentenyladenosine (iPR), the meta hydroxylated derivative of benzyladenine m-topolin, buta-2,3-dienyladenine (HA-8), penta-2,3-dienyladenine (HA-1), 4-methyl-penta-2,3-dienyladenine (HA-10), 4-hydroxy-2-butynyladenine (RM1), 2-butynyladenine (RM6), and to a lower extent, with cis-zeatin (cZ), zeatin riboside and dihydrozeatin (DZ). Together with AHK3, involved in the cytokinin-dependent responses to Pi starvation and sucrose stresses. Required for the formation of auxin-transporting vascular tissues in the hypocotyl, and primary and lateral roots, but not in adventitious roots, thus leading to auxin basipetal transport that regulates root development and branching. Involved in alkamides (e.g. N-isobutyl decanamide) and N-acylethanolamides (NAE) signaling that control meristematic activity and differentiation processes during plant development. Prevents the uptake of sulfate by mediating cytokinin-dependent down-regulation of high-affinity sulfate transporters (e.g. SULTR1;1 and SULTR1;2) expression in roots. Together with AHK2, required for growth and reproduction promotion stimulated by the endophytic fungus Piriformospora indica in a trans-zeatin-dependent manner. Required to trigger the phytotoxic effect of the snapdragon (Antirrhinum majus) flowers volatile organic compound (VOC) methyl benzoate (MB). Plays a role in the cytokinin-mediated repression of the iron uptake pathway. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 6 |
| >sp|Q54YZ9|DHKJ_DICDI Hybrid signal transduction histidine kinase J OS=Dictyostelium discoideum GN=dhkJ PE=3 SV=2 | Back alignment and function description |
|---|
Score = 286 bits (733), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 205/613 (33%), Positives = 295/613 (48%), Gaps = 105/613 (17%)
Query: 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI 671
K AEAA AKS F+A +SHEIRTPMNG++GM + +DTEL A Q +Y +S L+
Sbjct: 1337 KETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYLSMVQSSAGSLL 1396
Query: 672 SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVV 731
++IND+LD +KIE+GRLE + F L L + L S +A+QK IEL ++ VP+ +
Sbjct: 1397 TIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVPDSL 1456
Query: 732 IGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKS 791
IGDPGR RQI+ NLVGN+IKFT + +VD+ KV EKSL+
Sbjct: 1457 IGDPGRLRQIVNNLVGNAIKFTS---------------QGEVDLVVKV-EKSLS------ 1494
Query: 792 DKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851
G + L +V DTG+GIP + IF
Sbjct: 1495 ---------------------------------CGEVVLKFSVIDTGIGIPKDKLHLIFE 1521
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
F QAD S +R YGGTG+GL+IS LVELM G++ VS+ G GSTF FT F
Sbjct: 1522 AFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGSTFEFTAQF-------- 1573
Query: 912 DPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTC 971
P +P + + L++DD +V + L + V+N+ Q A + +
Sbjct: 1574 -PTSPNQLPLTEKLNDVHTLIVDDNKSTLKVLKQILSEFGITSEVSNNTQDAFNMIVKAT 1632
Query: 972 STSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNL----PKIFLLATSIS 1027
T+ + V D ++G L M+ + +N+ KI +L +
Sbjct: 1633 KTTKPFEFIFV-------DAQLGTSLIDMM----------VEKNMNHCKTKIIMLISGGG 1675
Query: 1028 ETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVV 1087
+ + S+ I L+KP+ S + + + +Q KK L + G IL+
Sbjct: 1676 QRGYPDSSSNFITGYLSKPVSPSEIFDILTRQGITRQIPKQLCKKIQLTSEIFG-DILLA 1734
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
+DN VN+R+A L+K G V + G AV + FD MD+QMP GF+AT Q
Sbjct: 1735 EDNAVNQRLAIRLLEKFGHRVQLAENGLQAVAS-SQLRKFDLILMDVQMPHCGGFEATAQ 1793
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
IR E+E H PI+AMTA + +C++ GMDDY+SKP
Sbjct: 1794 IRKREHEQG------------------IHTPIIAMTAHALARDRVKCLEAGMDDYISKPI 1835
Query: 1208 EDEQLYTAVARFF 1220
+QL + ++
Sbjct: 1836 NPDQLKAMIEKYL 1848
|
Acts as a receptor histidine kinase for a signal transduction pathway. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 3 EC: . EC: 3 |
| >sp|P59342|BARA_SHIFL Signal transduction histidine-protein kinase BarA OS=Shigella flexneri GN=barA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (656), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 294/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P + G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSIQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------RQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
|
Member of the two-component regulatory system UvrY/BarA involved in the regulation of carbon metabolism via the CsrA/CsrB regulatory system. Phosphorylates UvrY, probably via a four-step phosphorelay. Shigella flexneri (taxid: 623) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 3 EC: . EC: 3 |
| >sp|P0AEC5|BARA_ECOLI Signal transduction histidine-protein kinase BarA OS=Escherichia coli (strain K12) GN=barA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (654), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
|
Member of the two-component regulatory system UvrY/BarA involved in the regulation of carbon metabolism via the CsrA/CsrB regulatory system. Phosphorylates UvrY, probably via a four-step phosphorelay. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 3 EC: . EC: 3 |
| >sp|P0AEC6|BARA_ECOL6 Signal transduction histidine-protein kinase BarA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=barA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (654), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
|
Member of the two-component regulatory system UvrY/BarA involved in the regulation of carbon metabolism via the CsrA/CsrB regulatory system. Phosphorylates UvrY, probably via a four-step phosphorelay. Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 3 EC: . EC: 3 |
| >sp|P0AEC7|BARA_ECO57 Signal transduction histidine-protein kinase BarA OS=Escherichia coli O157:H7 GN=barA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (654), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 191/623 (30%), Positives = 293/623 (47%), Gaps = 108/623 (17%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I D
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNI-----------------D 430
Query: 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDT 837
++EK + L NT ++++ V + DT
Sbjct: 431 ILVEK-------------------------------RALSNT-------KVQIEVQIRDT 452
Query: 838 GVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
G+GIP Q R+F F QAD+S SR +GGTG+GL I++ LV MGG+I F S+P GSTF
Sbjct: 453 GIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 898 SFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVA 957
F + L+P P G R ++ S A+ T + +
Sbjct: 513 WFHINL------DLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCT----------LDIL 556
Query: 958 NSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLP 1017
+ L Y + + S LP D+ I + L Q + +S +
Sbjct: 557 SETPLEVVY---SPTFSALPP-----AHYDMMLLGIAVTFREPLTMQHERLAKAVS--MT 606
Query: 1018 KIFLLATSI-SETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLG 1076
+LA ++ + ++LK DGI L KPL + L+ E +Q P
Sbjct: 607 DFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHH----KQNTLLPVTD 662
Query: 1077 HLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
++ VDDN N ++ L+ V D G AV++ FD MD+QM
Sbjct: 663 ESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVER-AKQMPFDLILMDIQM 721
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P+MDG +A I L ++ P++A+TA + E+ +
Sbjct: 722 PDMDGIRACELIHQLPHQ--------------------QQTPVIAVTAHAMAGQKEKLLG 761
Query: 1197 CGMDDYVSKPFEDEQLYTAVARF 1219
GM DY++KP E+E+L+ + R+
Sbjct: 762 AGMSDYLAKPIEEERLHNLLLRY 784
|
Member of the two-component regulatory system UvrY/BarA involved in the regulation of carbon metabolism via the CsrA/CsrB regulatory system. Phosphorylates UvrY, probably via a four-step phosphorelay. Escherichia coli O157:H7 (taxid: 83334) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 3 EC: . EC: 3 |
| >sp|P48027|GACS_PSESY Sensor protein GacS OS=Pseudomonas syringae pv. syringae GN=gacS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 179/629 (28%), Positives = 276/629 (43%), Gaps = 138/629 (21%)
Query: 613 ARAEAADVA--KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDL 670
AR EA + + KS+FLA +SHEIRTP+NG+LG +L +EL Q DY T S +L
Sbjct: 264 ARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTPRQFDYLGTIEKSADNL 323
Query: 671 ISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEV 730
+S+IN++LD +KIE+G+L + +PF+L D+L + L++ + A+ K +EL V P
Sbjct: 324 LSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLA 383
Query: 731 VIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHK 790
+ GDP R RQI+TNLV N+IKFT++ G I L D+ ++ V + +
Sbjct: 384 LSGDPLRLRQILTNLVSNAIKFTRE-GTIVARAMLEDETEEHAQLRISVQDTGI------ 436
Query: 791 SDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF 850
G D ++ F DN
Sbjct: 437 ---------GLSSQDVRALFQAFSQADN-------------------------------- 455
Query: 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNS 910
S SR GGTG+GL IS+ L+E MGGEIG S PG GS F ++ +
Sbjct: 456 --------SLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLKLPKARE-- 505
Query: 911 LDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDT 970
D + +P GLRA V++ + + + L+ + V N+++ + ++
Sbjct: 506 -DKEESLNIP----LGGLRAAVLEHHDLARQALEHQLEDCGLQTIVFNNLENLLNGVTAA 560
Query: 971 CSTSVLPQLALVLID----------KDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIF 1020
T LA++ + + +WD E NL
Sbjct: 561 HETPAAIDLAVLGVTALEISPERLRQHIWDLE----------------------NLNCKV 598
Query: 1021 LLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQ--------KRKK 1072
++ +E +L + T L Q P ++KLQ+ + +
Sbjct: 599 MVLCPTTEHALFQLAVHDVYTQL-------------QAKPACTRKLQKALSELIAPRAVR 645
Query: 1073 PSLGHLL--KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
+G L + ++L VDDN N + + L+ GA V V+ G AAV+ + FD
Sbjct: 646 ADIGPPLSSRAPRVLCVDDNPANLLLVQTLLEDMGAEVVAVEGGYAAVNAVQ-QEAFDLV 704
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
MD+QMP MDG QAT IR E E N+ +PI+A+TA +
Sbjct: 705 LMDVQMPGMDGRQATEAIRAWEAERNQS-----------------SLPIVALTAHAMANE 747
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
++ GMDDY++KP + QL V ++
Sbjct: 748 KRSLLQSGMDDYLTKPISERQLAQVVLKW 776
|
Forms part of a two-component regulatory system gacA/gacS(lemA). May be involved in lesion formation, swarming and in the production of extracellular protease, syringomycin and N-acyl-L-homoserine lactone (acyl-HSL). Required for pathogenicity on bean. Pseudomonas syringae pv. syringae (taxid: 321) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 3 EC: . EC: 3 |
| >sp|O14002|MAK2_SCHPO Peroxide stress-activated histidine kinase mak2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mak2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 175/660 (26%), Positives = 291/660 (44%), Gaps = 133/660 (20%)
Query: 604 DYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTA 663
D ++ E + A A K+ FLA +SHE+RTP + GML +L DT+L+ Q D TA
Sbjct: 1736 DINDEKEAREAAMHAVNLKTNFLANMSHELRTPFSSFYGMLSLLSDTKLNEEQYDIVSTA 1795
Query: 664 HNSGKDLISLINDVLDQAKIESG--RLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAI 721
S L+ +I+D+L+ ++++SG +LEP+ V F + + + + + L + K ++++
Sbjct: 1796 KQSCTSLVQIIDDLLNFSELKSGKMKLEPDKV-FDVEENIADCIELVYPSLSSKPVQISY 1854
Query: 722 YVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLE 781
+ VP ++ GD + RQ+ITNL+GNS+KFT + GHI + D+
Sbjct: 1855 DIYPNVPALLAGDSAKLRQVITNLLGNSVKFTTE-GHILLRCMAIDE------------- 1900
Query: 782 KSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841
+N+ +++ KL +EDTG+G+
Sbjct: 1901 -EINAEENQC-------------------------------------KLRFEIEDTGIGL 1922
Query: 842 PLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901
E +F PF Q D ST+R YGG+G+GLSI + ++M G+IG S G GSTF F V
Sbjct: 1923 KEEQLKLLFNPFTQVDGSTTRIYGGSGLGLSICLQICKIMDGDIGVQSVYGEGSTFWFHV 1982
Query: 902 TFTEGERNSLDPKWQQYVPDVSE-FRGLRALVIDDK--SIRAEVTRYHLQRLEMAVHVAN 958
RN Q++ + E F +R + + K +++ T + R ++ V +
Sbjct: 1983 QL----RNVTSKLSQKHFEESHERFANIRQSLKNAKILVVKSFTTSRSIFRSLFSLAVVD 2038
Query: 959 SMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018
+ T + + QL L + +D L + Q + +S
Sbjct: 2039 TT---------TIYSDIEQQLIDSLDKRQPYD---FLCIEAASGQTEQIITQILSNQKLN 2086
Query: 1019 IFLLATSISETDRDELKSDG--IVTLLTK----------PLRLSVLIGCFQ------EDP 1060
LL + R +++SDG +T L K P+R+S L+ F P
Sbjct: 2087 KVLLIVLLPSIQRTKVRSDGDPFITSLNKNQSRIFCFREPIRISKLLQNFPALLSKWSTP 2146
Query: 1061 ESSKKLQQKRKKP-----------SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVT 1109
+ Q R P +L+ K L+ +DN++ R++ L G V
Sbjct: 2147 TKLVEPSQFRASPRKVDQAVVLSSEEKEILQKKYALIAEDNLIARKLLTKQLSNLGFQV- 2205
Query: 1110 CVDCGRAAVDKLTPPHNFDA--------CFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161
AAVD + ++A F D MP DG +A IR E E N
Sbjct: 2206 -----HAAVDGVELVKMYEAKQFGFYSVIFADYHMPIRDGAEAVMDIRAYERENNCSTP- 2259
Query: 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221
+P++A+TAD+ +++ ++C++ GM+ Y++KPF +QL AV F +
Sbjct: 2260 ---------------IPVIALTADIQKSAKQRCLEVGMNFYLTKPFTQKQLVNAVREFVL 2304
|
Involved in the control of the SAPK-dependent transcriptional response to peroxide stress. Regulates sty1 activity. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 3 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1223 | ||||||
| 224131798 | 1234 | histidine kinase cytokinin receptor [Pop | 0.992 | 0.983 | 0.692 | 0.0 | |
| 359485817 | 1272 | PREDICTED: histidine kinase 2-like [Viti | 0.996 | 0.958 | 0.692 | 0.0 | |
| 147789780 | 1400 | hypothetical protein VITISV_028333 [Viti | 0.996 | 0.870 | 0.678 | 0.0 | |
| 190148355 | 1260 | histidine kinase 2 [Betula pendula] | 0.986 | 0.957 | 0.675 | 0.0 | |
| 296085009 | 1203 | unnamed protein product [Vitis vinifera] | 0.960 | 0.976 | 0.673 | 0.0 | |
| 356553458 | 1225 | PREDICTED: histidine kinase 2-like [Glyc | 0.969 | 0.968 | 0.640 | 0.0 | |
| 356499485 | 1282 | PREDICTED: histidine kinase 2-like [Glyc | 0.968 | 0.923 | 0.638 | 0.0 | |
| 449444494 | 1240 | PREDICTED: histidine kinase 2-like [Cucu | 0.985 | 0.971 | 0.618 | 0.0 | |
| 449505124 | 1240 | PREDICTED: histidine kinase 2-like [Cucu | 0.985 | 0.971 | 0.618 | 0.0 | |
| 357495343 | 1269 | Histidine kinase cytokinin receptor [Med | 0.945 | 0.910 | 0.625 | 0.0 |
| >gi|224131798|ref|XP_002321181.1| histidine kinase cytokinin receptor [Populus trichocarpa] gi|222861954|gb|EEE99496.1| histidine kinase cytokinin receptor [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1727 bits (4472), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 857/1238 (69%), Positives = 994/1238 (80%), Gaps = 24/1238 (1%)
Query: 3 MAMTCKLCGSSSSRLSASSKLKKASEPLQGPDRVNR-RSTLAFLWLLGF-VIVGSICFLL 60
M++ CKL GS+ + S KL+K+ E L + + + LW LG V +GSI L
Sbjct: 1 MSINCKLSGSNGTS-QESFKLRKSKEVLHETNSARKWKRKFLLLWFLGVAVTIGSIWLLF 59
Query: 61 SCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTREPG 120
S D GA + + SCE+ AQ+ L+H NVS NQLHAL +LFS+SDQ+ASL CT+EPG
Sbjct: 60 SFDSGAL--GRKGQSLDSCEEGAQVLLRHFNVSKNQLHALGSLFSDSDQVASLDCTKEPG 117
Query: 121 SGMLLHNGITCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVNVSWKLDHSVLKNIS 180
ML+++GI CA+KVP SKKQEFQ+ W+AEDV +CPV+D N KLD S+L +
Sbjct: 118 PEMLINDGIACALKVPCSKKQEFQQHIRWVAEDVGPNGKCPVQDENEFRKLDRSLLDESA 177
Query: 181 H---------------ARTWSNCTRDHFKILSFCLFKGCWWFICGMVVICIIVSLLFKSR 225
R +C DH K+ SF L K CWW + GM+V CI++ K
Sbjct: 178 SFVSQSTISSISQDFGKRREVDCAEDHCKLFSFDLVKECWWVLVGMIVSCILLGYNLKFW 237
Query: 226 RNHKHKHDQLQPVSQQRQMILQQKQQQQTPHPPRSAGKWRMKILVVFVLLGIAISVWLFW 285
R K QL+PV QQRQ +LQ Q Q + PPR AGKWR K+L++FVLLG+ +S+WLFW
Sbjct: 238 RKQNQKLVQLEPVPQQRQQLLQMNQHQLSHSPPRGAGKWRKKLLIIFVLLGVLVSIWLFW 297
Query: 286 LLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTF 345
L EK+ RR+ETLA+MCDERARMLQDQFNVSMNHVHALAILVSTFHH K+PSA+DQKTF
Sbjct: 298 HLHEKIISRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTF 357
Query: 346 GEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDP 405
GEYT+RT FERPLTSGVAYALKV H ER+QFE+QHGW IKKM TEDQTLVQDC P+ LDP
Sbjct: 358 GEYTKRTDFERPLTSGVAYALKVPHLERKQFEEQHGWTIKKMGTEDQTLVQDCIPDKLDP 417
Query: 406 APVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGV 465
AP+QDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLT PFKLLKSNHLGV
Sbjct: 418 APIQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGV 477
Query: 466 VLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTN 525
VLTFAVYNTDLP DATPEQRI+AT+GYLGASYDVPSLVEKLLHQL+SKQTIVVNVYDTTN
Sbjct: 478 VLTFAVYNTDLP-DATPEQRIDATVGYLGASYDVPSLVEKLLHQLSSKQTIVVNVYDTTN 536
Query: 526 ASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITL 585
A+API MYG DVTDTGLL VS+LDFGDP RKHEMHCRFK KPP+PW AINAS+G++VITL
Sbjct: 537 ATAPILMYGTDVTDTGLLHVSSLDFGDPLRKHEMHCRFKHKPPLPWPAINASVGLLVITL 596
Query: 586 LVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ 645
LVGHIFHAAINRIA+VE DY EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ
Sbjct: 597 LVGHIFHAAINRIAKVEEDYREMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ 656
Query: 646 MLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVL 705
MLM+T+LD Q+DYA TAH SGKDLI+LIN+VLDQAKIESGRLE E VPF L VLDNVL
Sbjct: 657 MLMETDLDVNQMDYANTAHTSGKDLIALINEVLDQAKIESGRLELEAVPFDLRSVLDNVL 716
Query: 706 SLFSSKANQKGIE-LAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVH 764
SLFS K+N+KGIE LA+YVSDR+PEVVIGDPGRFRQIITNLVGNSIKFT+DKGH+FVSVH
Sbjct: 717 SLFSGKSNEKGIEKLAVYVSDRLPEVVIGDPGRFRQIITNLVGNSIKFTRDKGHVFVSVH 776
Query: 765 LADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQ 824
LAD+VRS +D +D VL++ L VQ S KVY++LSGFPVV+RWKSWE FK ++ ++
Sbjct: 777 LADEVRSPLDARDAVLKQGLELVQDTSSKVYDSLSGFPVVNRWKSWEKFKKSSCIDSRDE 836
Query: 825 LGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGE 884
I+LLVTVEDTGVGIP +AQ IFTPFMQADSSTSR YGGTGIGLSIS+CLV+LMGGE
Sbjct: 837 PEMIRLLVTVEDTGVGIPEDAQGNIFTPFMQADSSTSRKYGGTGIGLSISKCLVDLMGGE 896
Query: 885 IGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTR 944
IGFVSE G GSTFSF V+F +GE SLD KWQ Y P V E RG RALVID++S+RAEVT+
Sbjct: 897 IGFVSECGIGSTFSFIVSFRKGESTSLDTKWQPYDPAVLEVRGGRALVIDERSVRAEVTK 956
Query: 945 YHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004
YHLQRL + VA S++ AC+YLS TS+ L +VLIDKD WDKE G+ H++LK
Sbjct: 957 YHLQRLGITADVAPSLKSACAYLSSGYCTSIPADLPIVLIDKDAWDKESGIAFHHLLKMP 1016
Query: 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESS 1063
++ G +I +L KIFLLAT+IS +R ELK+ G+V +L KPLRLSVLI CFQE S
Sbjct: 1017 KKNDGTDIQVDLSKIFLLATTISSDERLELKTSGLVDNVLVKPLRLSVLIACFQEAFGSG 1076
Query: 1064 KKLQQKRKK-PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT 1122
KK + RKK P+L +LL+GKQILVVDDN+VNRRVAEGALKKHGAIVTCV+ G+AA++KL
Sbjct: 1077 KKSEVNRKKPPALQNLLRGKQILVVDDNLVNRRVAEGALKKHGAIVTCVESGKAALEKLK 1136
Query: 1123 PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAM 1182
PPH+FDACFMD QMPEMDGF+AT QIR +E++ NE+IASG++S E+ GNV WH PILAM
Sbjct: 1137 PPHSFDACFMDFQMPEMDGFEATRQIRSMESQFNEKIASGKASMELPGNVAYWHTPILAM 1196
Query: 1183 TADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
TADVIQA+NE+C+KCGMD YVSKPFEDE+LY AV RFF
Sbjct: 1197 TADVIQATNEECLKCGMDGYVSKPFEDEKLYNAVTRFF 1234
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485817|ref|XP_002269977.2| PREDICTED: histidine kinase 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1720 bits (4454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1251 (69%), Positives = 996/1251 (79%), Gaps = 32/1251 (2%)
Query: 1 MTMAMTCKLCGSSSSRLSASSKLKKASEPLQGPDRVNR-RSTLAFLWLLGFVIVGSICFL 59
+ M++ CKL G S RL A+ KLKK+ EPL G + V + R LWLLG VI+G ICFL
Sbjct: 26 LKMSLNCKLSGFSG-RLPANLKLKKSKEPLHGSNCVRKWRRKFLLLWLLG-VIIGLICFL 83
Query: 60 LSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTREP 119
+ GA + +E+ CE+KA+I L+H NVS NQLH+LA+LF+ESDQIASL+CT+E
Sbjct: 84 SVLNAGAL--SRKEKTPDLCEEKARILLEHFNVSKNQLHSLASLFAESDQIASLECTKEA 141
Query: 120 GSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVNVSWKLDHSVL--- 176
G M N I CA+KVP S+ QEF+KQ AE ++ DQCPV D N+ KLD S+L
Sbjct: 142 GFEMPPGNAIACALKVPCSQNQEFEKQHDQAAESLEPNDQCPVRDENIPGKLDLSLLGDQ 201
Query: 177 -----------------KNISHARTWSNCTRDHFKILSFCLFKGCWWFICGMVVICIIVS 219
++ R +NCT++H + S CL K WW + GMVV C +
Sbjct: 202 SASFSSQSTSSSVSLDGQSGEKIRALANCTKEHCENFSLCLVKVGWWVLVGMVVSCKLSG 261
Query: 220 LLFKSRRNHKHKHDQLQPVSQQRQMI-----LQQKQQQQTPHPPRSAGKWRMKILVVFVL 274
K N K K + Q + +Q+ + L+ KQQQ + AGKWR K+L++FVL
Sbjct: 262 SHVKLWGNRKQKLVEQQKLVEQQSQVQQQRQLRPKQQQPAQSSSKVAGKWRKKLLIIFVL 321
Query: 275 LGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHR 334
LG+ IS+WLFW L + ++LRR+ETL +MCDERARMLQDQFNVSMNHVHALAILVSTFHH
Sbjct: 322 LGVIISIWLFWHLNKDINLRRRETLTNMCDERARMLQDQFNVSMNHVHALAILVSTFHHG 381
Query: 335 KHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTL 394
KHPSA+DQKTFGEYTERTAFERPLTSGVAYALKVLHSERE FEK+HGW IKKMETEDQTL
Sbjct: 382 KHPSAIDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREHFEKEHGWTIKKMETEDQTL 441
Query: 395 VQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPP 454
VQDC ENLDP+P+QDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLT P
Sbjct: 442 VQDCILENLDPSPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSP 501
Query: 455 FKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQ 514
FKLLKSNHLGVVLTFAVYN DLP DATPEQRIEAT+GYLGASYDVPSLV+KLLHQLASKQ
Sbjct: 502 FKLLKSNHLGVVLTFAVYNADLPPDATPEQRIEATVGYLGASYDVPSLVKKLLHQLASKQ 561
Query: 515 TIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAI 574
TIVVNVYDTTNASAPINMYG +VTDTGLLR+SNLDFGDP+RKHEMHCRFKQKPP PWTAI
Sbjct: 562 TIVVNVYDTTNASAPINMYGTNVTDTGLLRISNLDFGDPARKHEMHCRFKQKPPPPWTAI 621
Query: 575 NASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIR 634
AS+GV+VITLLVGHIFHAAINRIA+VE DY +MMELK RAEAADVAKSQFLATVSHEIR
Sbjct: 622 TASVGVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAEAADVAKSQFLATVSHEIR 681
Query: 635 TPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVP 694
TPMNGVLGML+MLMD+ LDA Q DYA+TAH SGKDLISLIN+VLDQAKIESGRLE E VP
Sbjct: 682 TPMNGVLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINEVLDQAKIESGRLELEAVP 741
Query: 695 FHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQ 754
F L LDNVLSLFS K+++KGIELA+Y+SD+VPE VIGDPGRFRQIITNLVGNSIKFT
Sbjct: 742 FDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQIITNLVGNSIKFTH 801
Query: 755 DKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFK 814
DKGHIFVSVHLAD+V D++D+VL +SLN V S+ YNTLSGFPVV+RWKSWE FK
Sbjct: 802 DKGHIFVSVHLADEVVGPPDLRDEVLRQSLNIVHDSSNNSYNTLSGFPVVNRWKSWEKFK 861
Query: 815 MLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSIS 874
L T++ME+ IKLLVTVEDTGVGIP EAQ RIF PFMQADSSTSRTYGGTGIGLSIS
Sbjct: 862 KLSCTDSMEETSIIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGTGIGLSIS 921
Query: 875 RCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVID 934
+ LV+LMGGEIGF SEPGTGSTFSFTV FT+GE + LD K Q + P SEF+ LRALV+D
Sbjct: 922 KRLVDLMGGEIGFESEPGTGSTFSFTVAFTKGETSLLDTKQQPHDPAGSEFQELRALVVD 981
Query: 935 DKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIG 994
+SIRAEVTRYHLQRL ++V S+ ACSYLS+ S +A+VL+DK+VWDKE G
Sbjct: 982 CRSIRAEVTRYHLQRLGISVDKTFSLISACSYLSNNSDPSASTSVAMVLVDKEVWDKEAG 1041
Query: 995 LVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLI 1053
LV H+MLK+ R G +E+ PKIFLL TS+S +R+ELKS G V +L KPLRLSVLI
Sbjct: 1042 LVFHHMLKELRPNGTVEVQEKRPKIFLLDTSLSSAERNELKSAGFVDNVLMKPLRLSVLI 1101
Query: 1054 GCFQEDPESSKKLQQKRKKP-SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVD 1112
CFQE K+ Q R KP +LG+LL+ K+ILVVDDN VNRRVAE ALKK+GAIVTCVD
Sbjct: 1102 SCFQEVFGIGKRKQANRGKPLTLGNLLREKRILVVDDNAVNRRVAEFALKKYGAIVTCVD 1161
Query: 1113 CGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNV 1172
G+AA+ L PPHNFDACFMDLQMPEMDGF+AT +IR +E+++NE+I SGE S EMF NV
Sbjct: 1162 SGKAALLMLKPPHNFDACFMDLQMPEMDGFRATQEIRRMESKVNERIKSGEVSIEMFANV 1221
Query: 1173 GLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
WH PILAMTADVIQA+NE+CMKCGMD YV+KPFE++QLY+AVA FF SG
Sbjct: 1222 AYWHTPILAMTADVIQANNEECMKCGMDGYVAKPFEEDQLYSAVAHFFESG 1272
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147789780|emb|CAN76309.1| hypothetical protein VITISV_028333 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1702 bits (4408), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1276 (67%), Positives = 996/1276 (78%), Gaps = 57/1276 (4%)
Query: 1 MTMAMTCKLCGSSSSRLSASSKLKKASEPLQGPDRVNR-RSTLAFLWLLGFVIVGSICFL 59
+ M++ CKL G S RL A+ KLKK+ EPL G + V + R LWLLG VI+G ICFL
Sbjct: 40 LKMSLNCKLSGFSG-RLPANLKLKKSKEPLHGSNCVRKWRRKFLLLWLLG-VIIGLICFL 97
Query: 60 LSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQ---------- 109
+ GA + +E+ CE+KA+I L+H NVS NQLH+LA+LF+ESDQ
Sbjct: 98 XVLNAGAL--SRKEKTPDLCEEKARILLEHFNVSKNQLHSLASLFAESDQGQWDIDHKAN 155
Query: 110 ---------------IASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAEDV 154
IASL+CT+E G M N I CA+KVP S+ QEF+KQ AE +
Sbjct: 156 VEFFKYWQKKYKDGKIASLECTKEAGFEMPPGNAIACALKVPCSQNQEFEKQHDQAAESL 215
Query: 155 KQMDQCPVEDVNVSWKLDHSVL--------------------KNISHARTWSNCTRDHFK 194
+ DQCPV D N+ KLD S+L ++ R +NCT++H +
Sbjct: 216 EPNDQCPVRDENIPGKLDLSLLGDQSASFSSQSTSSSVSLDGQSGEKIRALANCTKEHCE 275
Query: 195 ILSFCLFKGCWWFICGMVVICIIVSLLFKSRRNHKHKHDQLQPVSQQRQMI-----LQQK 249
S CL K WW + GMVV C + K N K K + Q + +Q+ + L+ K
Sbjct: 276 NFSLCLVKVGWWVLVGMVVSCKLSGSHVKLWGNRKQKLVEQQKLVEQQSQVQQQRQLRPK 335
Query: 250 QQQQTPHPPRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARM 309
QQQ + AGKWR K+L++FVLLG+ IS+WLFW L + ++LRR+ETL +MCDERARM
Sbjct: 336 QQQPAQSSSKVAGKWRKKLLIIFVLLGVIISIWLFWHLNKDINLRRRETLTNMCDERARM 395
Query: 310 LQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVL 369
LQDQFNVSMNHVHALAILVSTFHH KHPSA+DQKTFGEYTERTAFERPLTSGVAYALKVL
Sbjct: 396 LQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKTFGEYTERTAFERPLTSGVAYALKVL 455
Query: 370 HSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSID 429
HSERE FE +HGW IKKMETEDQTLVQDC ENLDP+P+QDEYAPVIFSQETVSHIVSID
Sbjct: 456 HSEREHFENEHGWTIKKMETEDQTLVQDCILENLDPSPIQDEYAPVIFSQETVSHIVSID 515
Query: 430 MMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEAT 489
MMSGKEDRENILRARASGKGVLT PFKLLKSNHLGVVLTFAVYN DLP DATPEQRIEAT
Sbjct: 516 MMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNADLPPDATPEQRIEAT 575
Query: 490 LGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLD 549
+GYLGASYDVPSLV+KLLHQLASKQTIVVNVYDTTNASAPINMYG +VTDTGLLR+SNLD
Sbjct: 576 VGYLGASYDVPSLVKKLLHQLASKQTIVVNVYDTTNASAPINMYGTNVTDTGLLRISNLD 635
Query: 550 FGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMM 609
FGDP+RKHEMHCRFKQKPP PWTAI AS+GV+VITLLVGHIFHAAINRIA+VE DY +MM
Sbjct: 636 FGDPARKHEMHCRFKQKPPPPWTAITASVGVLVITLLVGHIFHAAINRIAKVEGDYRQMM 695
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
ELK RAEAADVAKSQFLATVSHEIRTPMNGVLGML+MLMD+ LDA Q DYA+TAH SGKD
Sbjct: 696 ELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDSGLDANQQDYAETAHASGKD 755
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
LISLIN+VLDQAKIESGRLE E VPF L LDNVLSLFS K+++KGIELA+Y+SD+VPE
Sbjct: 756 LISLINEVLDQAKIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPE 815
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQH 789
VIGDPGRFRQIITNLVGNSIKFT DKGHIFVSVHLAD+V D++D+VL +SLN V
Sbjct: 816 FVIGDPGRFRQIITNLVGNSIKFTHDKGHIFVSVHLADEVVGPPDLRDEVLRQSLNIVHD 875
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
S+ YNTLSGFPVV+RWKSWE FK L T++ME+ IKLLVTVEDTGVGIP EAQ RI
Sbjct: 876 SSNNSYNTLSGFPVVNRWKSWEKFKKLXCTDSMEETSIIKLLVTVEDTGVGIPSEAQSRI 935
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERN 909
F PFMQADSSTSRTYGGTGIGLSIS+ LV+LMGGEIGF SEPGTGSTFSFTV FT+GE +
Sbjct: 936 FMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFESEPGTGSTFSFTVAFTKGETS 995
Query: 910 SLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSD 969
LD K Q + P SEF+GLRALV+D +SIRAEVTRYHLQRL ++V S+ ACSYLS+
Sbjct: 996 LLDTKQQPHDPAGSEFQGLRALVVDCRSIRAEVTRYHLQRLGISVDKTFSLISACSYLSN 1055
Query: 970 TCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET 1029
S +A+VL+DK+VWDKE GLV H+MLK+ R G +E+ PKIFLL TS+S
Sbjct: 1056 NSDPSASTSVAMVLVDKEVWDKEAGLVFHHMLKELRPNGTVEVQEKRPKIFLLDTSLSSA 1115
Query: 1030 DRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKP-SLGHLLKGKQILVV 1087
+R+ELKS G V +L KPLRLSVLI CFQE K+ Q R KP +LG+LL+ K+ILVV
Sbjct: 1116 ERNELKSAGFVDNVLMKPLRLSVLISCFQEVFGIGKRKQANRGKPLTLGNLLREKRILVV 1175
Query: 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQ 1147
DDN VNRRVAE ALKK+GAIVTCVD G+AA+ L PPHNFDACFMDLQMPEMDGF+AT +
Sbjct: 1176 DDNAVNRRVAEFALKKYGAIVTCVDSGKAALLMLKPPHNFDACFMDLQMPEMDGFKATQE 1235
Query: 1148 IRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPF 1207
IR +E+++NE+I SGE S EMF NV WH PILAMTADVIQA+NE+CMKCGMD YV+KPF
Sbjct: 1236 IRRMESKVNERIKSGEVSIEMFANVAYWHTPILAMTADVIQANNEECMKCGMDGYVAKPF 1295
Query: 1208 EDEQLYTAVARFFMSG 1223
E++QLY+AVA FF SG
Sbjct: 1296 EEDQLYSAVAHFFESG 1311
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|190148355|gb|ACE63260.1| histidine kinase 2 [Betula pendula] | Back alignment and taxonomy information |
|---|
Score = 1650 bits (4273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 843/1248 (67%), Positives = 968/1248 (77%), Gaps = 42/1248 (3%)
Query: 3 MAMTCKLCGSSSSRLSASSKLKKASEPLQGPDRVNR-RSTLAFLWLLGFVIVGSICFLLS 61
M++ CKL G + RL A SKLKK E L GP+ V + R L FLWL+ + +GSI S
Sbjct: 28 MSLDCKLSGFNG-RLPACSKLKKTKEQLHGPNSVRKWRRKLLFLWLIVVITLGSIWVFSS 86
Query: 62 CDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTREPGS 121
+ G G + SC+ KAQI LQH NVS++QLHALA+LFSESDQI SL+C++ G
Sbjct: 87 LNAGTLTGKDMTPD--SCDGKAQILLQHFNVSNSQLHALASLFSESDQITSLQCSKNLGP 144
Query: 122 GMLLHNGITCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVNVSWKLDHSVL----- 176
M L N I CA+++P S QEF KQ W+AE+ + DQC V D + K D S+L
Sbjct: 145 KMPLSNSIACALRLPCSDMQEFHKQHRWIAENDEPKDQCSVRDEFIPRKFDLSMLDNTPM 204
Query: 177 -------------------KNISHARTWSNCTRDHFKILSFCLFKGCWWFICGMVVICII 217
KNI + ++C ++H SF F W + +V++
Sbjct: 205 PFSSQSGTSSISANHQICGKNILLSSALADCAKEHCG--SFYTFLKVSWLLLVVVIVSRK 262
Query: 218 VSLL-FKSRRNHKHKHDQLQPVSQQRQMILQQKQQQQTPHPPRSAGKWRMKILVVFVLLG 276
+S L RN K K PV+QQ+Q QQ PP+ AGKWR K L++FVL G
Sbjct: 263 MSPLHLNFWRNQKKKLLHQLPVAQQQQQKQQQLAHS----PPKGAGKWRKKFLLLFVLNG 318
Query: 277 IAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKH 336
I +S+WLFW + +++ LRR+ETLA+MCDERARMLQDQFNVSMNHVHALAILVSTFHH KH
Sbjct: 319 ITMSIWLFWYMNQEIILRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKH 378
Query: 337 PSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQ 396
PSA+DQKTFGEYTERTAFERPLTSGVAYALKV HS REQFE+QHGW IKKMETEDQTLVQ
Sbjct: 379 PSAIDQKTFGEYTERTAFERPLTSGVAYALKVPHSMREQFERQHGWTIKKMETEDQTLVQ 438
Query: 397 DCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFK 456
+C PENLDPAP+QDEYAPVIFSQETVSHIVSIDMMSGKEDR+NILRARA+GKGVLT PFK
Sbjct: 439 ECIPENLDPAPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRDNILRARATGKGVLTSPFK 498
Query: 457 LLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTI 516
LLKSNHLGVVLTFAVYNTDLP DATPE+RIEAT+GYLGASYDVPSLVEKLLHQLASKQ I
Sbjct: 499 LLKSNHLGVVLTFAVYNTDLPPDATPEKRIEATVGYLGASYDVPSLVEKLLHQLASKQMI 558
Query: 517 VVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINA 576
VVNVYDTT+AS+PINMYG DVTDTGLL SNLDFGDP RKHEMHCRFKQKPP+PWTAINA
Sbjct: 559 VVNVYDTTDASSPINMYGTDVTDTGLLHTSNLDFGDPLRKHEMHCRFKQKPPLPWTAINA 618
Query: 577 SIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTP 636
S+G++VITLLVGHIF+AAI+RIA+VE+DY +MMELK RAEAADVAKSQFLATVSHEIRTP
Sbjct: 619 SVGLLVITLLVGHIFYAAISRIAKVEDDYRKMMELKVRAEAADVAKSQFLATVSHEIRTP 678
Query: 637 MNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFH 696
MNGVLGMLQMLMDTELDA Q DYA+TAH SGKDLISLIN+VLD+AKIESGRLE E VPF
Sbjct: 679 MNGVLGMLQMLMDTELDAIQQDYAETAHASGKDLISLINEVLDRAKIESGRLELEAVPFD 738
Query: 697 LHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDK 756
L VLDNV SL S K+ +ELA+YVS+RVPEV+IGDPGRFRQIITNLVGNSIKFT+D
Sbjct: 739 LRAVLDNVSSLLSGKSYDIRMELAVYVSNRVPEVIIGDPGRFRQIITNLVGNSIKFTRDT 798
Query: 757 GHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKML 816
GHI +SVHLAD+V D+ D+V+ + L+SV SDK YNTLSGF VVDRWKSWE+FK L
Sbjct: 799 GHILISVHLADEVNGGPDMMDEVMRQGLSSVHEMSDKTYNTLSGFRVVDRWKSWEHFKKL 858
Query: 817 DNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRC 876
N+ME+ IKLLVTVEDTGVGIPLEAQ RIFTPFMQADSSTSRTYGGTGIGLSI +C
Sbjct: 859 GCRNSMEEPEMIKLLVTVEDTGVGIPLEAQSRIFTPFMQADSSTSRTYGGTGIGLSICKC 918
Query: 877 LVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDK 936
LV+LMGGEIGFVSEPG GSTFSFT F + E + D K QQY P +SE RGLRALVID +
Sbjct: 919 LVDLMGGEIGFVSEPGVGSTFSFTGLFRKVEVTTPDTKCQQYEPALSELRGLRALVIDKR 978
Query: 937 SIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLV 996
IRAEVTRYHLQRL ++ + S++ ACSYLS C TSV + ++VLIDKDVWDKE L
Sbjct: 979 IIRAEVTRYHLQRLGISSDITFSLKSACSYLSSACDTSVSAKFSMVLIDKDVWDKETSLS 1038
Query: 997 LHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGC 1055
H LK + EI NLPKIFLLATSI + + ELKS G+V +L KPLRL VL C
Sbjct: 1039 FHLSLKDHGQNSRTEIPINLPKIFLLATSIGQDEHTELKSAGVVDNVLIKPLRLGVLGAC 1098
Query: 1056 FQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR 1115
QE ++ ++K +LG LL+ K+ILVVDDN VNRRVAEGALKK+GAIVTCV+ G+
Sbjct: 1099 LQE--ALGRRKVNRKKSSTLGSLLREKRILVVDDNAVNRRVAEGALKKYGAIVTCVESGK 1156
Query: 1116 AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLW 1175
AA+ L PPHNFDACFMDLQMPEMDGF+AT +IR LE+E NE++A S EMFGNV W
Sbjct: 1157 AALAMLKPPHNFDACFMDLQMPEMDGFEATRRIRSLESEANEEVA----SREMFGNVAYW 1212
Query: 1176 HVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
H PILAMTADVI +SNE+CMKCGMDDYVSKPFE+ QLY+AVARFF SG
Sbjct: 1213 HTPILAMTADVIHSSNEECMKCGMDDYVSKPFEEGQLYSAVARFFESG 1260
|
Source: Betula pendula Species: Betula pendula Genus: Betula Family: Betulaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085009|emb|CBI28424.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1647 bits (4266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 841/1249 (67%), Positives = 965/1249 (77%), Gaps = 74/1249 (5%)
Query: 3 MAMTCKLCGSSSSRLSASSKLKKASEPLQGPDRVNR-RSTLAFLWLLGFVIVGSICFLLS 61
M++ CKL G S RL A+ KLKK+ EPL G + V + R LWLLG VI+G ICFL
Sbjct: 1 MSLNCKLSGFSG-RLPANLKLKKSKEPLHGSNCVRKWRRKFLLLWLLG-VIIGLICFLSV 58
Query: 62 CDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTREPGS 121
+ GA + +E+ CE+KA+I L+H NVS NQLH+LA+LF+ESDQIASL+CT+E G
Sbjct: 59 LNAGAL--SRKEKTPDLCEEKARILLEHFNVSKNQLHSLASLFAESDQIASLECTKEAGF 116
Query: 122 GMLLHNGITCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVNVSWKLDHSVL----- 176
M N I CA+KVP S+ QEF+KQ AE ++ DQCPV D N+ KLD S+L
Sbjct: 117 EMPPGNAIACALKVPCSQNQEFEKQHDQAAESLEPNDQCPVRDENIPGKLDLSLLGDQSA 176
Query: 177 ---------------KNISHARTWSNCTRDHFKILSFCLFKGCWWFICGMVVICIIVSLL 221
++ R +NCT++H + S CL K WW + GMVV C +
Sbjct: 177 SFSSQSTSSSVSLDGQSGEKIRALANCTKEHCENFSLCLVKVGWWVLVGMVVSCKLSGSH 236
Query: 222 FKSRRNHKHKHDQLQPVSQQRQMI-----LQQKQQQQTPHPPRSAGKWRMKILVVFVLLG 276
K N K K + Q + +Q+ + L+ KQQQ + AGKWR K+L++FVLLG
Sbjct: 237 VKLWGNRKQKLVEQQKLVEQQSQVQQQRQLRPKQQQPAQSSSKVAGKWRKKLLIIFVLLG 296
Query: 277 IAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKH 336
+ IS+WLFW L + ++LRR+ETL +MCDERARMLQDQFNVSMNHVHALAILVSTFHH KH
Sbjct: 297 VIISIWLFWHLNKDINLRRRETLTNMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKH 356
Query: 337 PSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQ 396
PSA+DQKTFGEYTERTAFERPLTSGVAYALKVLHSERE FEK+HGW IKKMETEDQTLVQ
Sbjct: 357 PSAIDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREHFEKEHGWTIKKMETEDQTLVQ 416
Query: 397 DCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFK 456
DC ENLDP+P+QDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLT PFK
Sbjct: 417 DCILENLDPSPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFK 476
Query: 457 LLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTI 516
LLKSNHLGVVLTFAVYN DLP DATPEQRIEAT+GYLGASYDVPSLV+KLLHQLASKQTI
Sbjct: 477 LLKSNHLGVVLTFAVYNADLPPDATPEQRIEATVGYLGASYDVPSLVKKLLHQLASKQTI 536
Query: 517 VVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINA 576
VVNVYDTTNASAPINMYG +VTDTGLLR+SNLDFGDP+RKHEMHCRFKQKPP PWTAI A
Sbjct: 537 VVNVYDTTNASAPINMYGTNVTDTGLLRISNLDFGDPARKHEMHCRFKQKPPPPWTAITA 596
Query: 577 SIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTP 636
S+GV+VITLLVGHIFHAAINRIA+VE DY +MMELK RAEAADVAKSQFLATVSHEIRTP
Sbjct: 597 SVGVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAEAADVAKSQFLATVSHEIRTP 656
Query: 637 MNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFH 696
MNGVLGML+MLMD+ LDA Q DYA+TAH SGKDLISLIN+VLDQAKIESGRLE E VPF
Sbjct: 657 MNGVLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINEVLDQAKIESGRLELEAVPFD 716
Query: 697 LHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDK 756
L LDNVLSLFS K+++KGIELA+Y+SD+VPE VIGDPGRFRQIITNLVGNSIKFT DK
Sbjct: 717 LRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQIITNLVGNSIKFTHDK 776
Query: 757 GHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKML 816
GHIFVSVHLAD+V+ FK L
Sbjct: 777 GHIFVSVHLADEVK------------------------------------------FKKL 794
Query: 817 DNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRC 876
T++ME+ IKLLVTVEDTGVGIP EAQ RIF PFMQADSSTSRTYGGTGIGLSIS+
Sbjct: 795 SCTDSMEETSIIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGTGIGLSISKR 854
Query: 877 LVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDK 936
LV+LMGGEIGF SEPGTGSTFSFTV FT+GE + LD K Q + P SEF+ LRALV+D +
Sbjct: 855 LVDLMGGEIGFESEPGTGSTFSFTVAFTKGETSLLDTKQQPHDPAGSEFQELRALVVDCR 914
Query: 937 SIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLV 996
SIRAEVTRYHLQRL ++V S+ ACSYLS+ S +A+VL+DK+VWDKE GLV
Sbjct: 915 SIRAEVTRYHLQRLGISVDKTFSLISACSYLSNNSDPSASTSVAMVLVDKEVWDKEAGLV 974
Query: 997 LHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGC 1055
H+MLK+ R G +E+ PKIFLL TS+S +R+ELKS G V +L KPLRLSVLI C
Sbjct: 975 FHHMLKELRPNGTVEVQEKRPKIFLLDTSLSSAERNELKSAGFVDNVLMKPLRLSVLISC 1034
Query: 1056 FQEDPESSKKLQQKRKKP-SLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCG 1114
FQE K+ Q R KP +LG+LL+ K+ILVVDDN VNRRVAE ALKK+GAIVTCVD G
Sbjct: 1035 FQEVFGIGKRKQANRGKPLTLGNLLREKRILVVDDNAVNRRVAEFALKKYGAIVTCVDSG 1094
Query: 1115 RAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGL 1174
+AA+ L PPHNFDACFMDLQMPEMDGF+AT +IR +E+++NE+I SGE S EMF NV
Sbjct: 1095 KAALLMLKPPHNFDACFMDLQMPEMDGFRATQEIRRMESKVNERIKSGEVSIEMFANVAY 1154
Query: 1175 WHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMSG 1223
WH PILAMTADVIQA+NE+CMKCGMD YV+KPFE++QLY+AVA FF SG
Sbjct: 1155 WHTPILAMTADVIQANNEECMKCGMDGYVAKPFEEDQLYSAVAHFFESG 1203
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553458|ref|XP_003545073.1| PREDICTED: histidine kinase 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1535 bits (3974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 794/1240 (64%), Positives = 937/1240 (75%), Gaps = 54/1240 (4%)
Query: 12 SSSSRLSASSKLKKASEPLQGPD--RVNRRSTLAFLWLLGFVIVGSICFLLSCDGGAFVG 69
+S+ RL ++ K K +EPL G + R RR L LW GFV +GS+ F+LS + V
Sbjct: 9 ASNGRLLSNMKSWKLNEPLNGSNSPRTCRRKPL-LLWFFGFVAIGSVWFILSFNSKYLVS 67
Query: 70 NEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTREPGSGMLLHNGI 129
E E CE++ + LQ NVS Q+HALA+LFS SDQI S C E MLL +G+
Sbjct: 68 KENEA---ICEERERALLQRYNVSRKQIHALASLFSGSDQILS-NCIDERRLQMLLSSGM 123
Query: 130 TCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVNVSWKLD-------------HSVL 176
++ + QE QK +A+ V+ ++QCPV + V +L+ HS L
Sbjct: 124 VSTPQLICPENQELQKVHTCVADTVEPIEQCPVLNDCVQTRLELSFPLKSYVSLASHSAL 183
Query: 177 -----------KNISHARTWS-NCTRDHFKILSFCLFKGCWWFICGMVVICIIVSLLFKS 224
KNI ++W + + S L KGCWW V+I I +S
Sbjct: 184 PTDLVSYLHRGKNI--VQSWELRVSAIRYHASSSNLIKGCWW-----VLIGITMSYFCLL 236
Query: 225 RRNHKHKHDQLQPVSQQRQMILQQKQQQQTPH-PPRSAGKWRMKILVVFVLLGIAISVWL 283
RN K K Q P +QQ+ + + P P R AG+WR K+LV+FV LGI S WL
Sbjct: 237 WRNQKQKLVQGHPAAQQKCL-------KHFPRGPSRGAGRWRKKLLVIFVSLGIIGSFWL 289
Query: 284 FWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQK 343
FW L + RR+ETLA+MCDERARMLQDQFNVSMNHVHALAILVSTFHH KHPSA+DQK
Sbjct: 290 FWHLNTGIMRRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQK 349
Query: 344 TFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENL 403
FGEYTE TAFERPLTSGVAYALKVLHS+R FEKQHGW IKKMETE++ LVQDC PENL
Sbjct: 350 IFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEKQHGWTIKKMETENEALVQDCIPENL 409
Query: 404 DPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHL 463
DPAP+QDEYAPVIF+QETVSHIVSIDMMSGKEDRENILRARASGKGVLT PFKLLKSNHL
Sbjct: 410 DPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHL 469
Query: 464 GVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDT 523
GVVLTFAVYNT+LP DAT EQRIEAT+GYLGASYDVPSLV+KLLHQLASKQTIVVNVYDT
Sbjct: 470 GVVLTFAVYNTNLPLDATLEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDT 529
Query: 524 TNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVI 583
TNASAPI MYG DV DTGLL +S+LDFGDP RKHEMHC FKQ+PP+PWTAINAS+GV VI
Sbjct: 530 TNASAPITMYGTDVADTGLLYISSLDFGDPLRKHEMHCSFKQRPPLPWTAINASVGVFVI 589
Query: 584 TLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGM 643
TLL+GHIF+AAINRIA+VE+DY +M ELK RAEAADVAKSQFLATVSHEIRTPMNGVLGM
Sbjct: 590 TLLLGHIFYAAINRIAKVEDDYRQMRELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGM 649
Query: 644 LQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDN 703
LQMLMDTELD Q+D AQTAH SGKDLIS+I++VLDQAKIE+G+LE E V F +LD
Sbjct: 650 LQMLMDTELDENQMDCAQTAHKSGKDLISVISEVLDQAKIEAGKLELEAVAFDPRAILDE 709
Query: 704 VLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV 763
+LSLFS K+N+KGIELA+Y S++VP+VVIGDP RFRQIITNLVGNS+KFT DKGH+FVSV
Sbjct: 710 ILSLFSEKSNEKGIELAVYASNQVPKVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSV 769
Query: 764 HLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTME 823
HLA++V++ + + D VL + LN Q S++ Y+TLSGFPV +RWKSW NFK L N E
Sbjct: 770 HLANEVKNPLHIMDAVLREGLNLNQDISNRTYDTLSGFPVCNRWKSWANFKQLSGINEPE 829
Query: 824 QLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGG 883
I+LLV VEDTG+GIP +AQ RIFTPFMQADSSTSRTYGGTGIGLSIS+CLV+LMGG
Sbjct: 830 I---IQLLVIVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGG 886
Query: 884 EIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVT 943
EIGFVSEPG GSTFSFT TF +GE SLD QQ SEF+GLR LV+D + IRAEVT
Sbjct: 887 EIGFVSEPGIGSTFSFTGTFRKGESTSLDAM-QQNNHFGSEFQGLRTLVVDSRKIRAEVT 945
Query: 944 RYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQ 1003
RYHLQRL M+V V S+ ACS LS+ C+ S+ QLA++LIDKD WDKE ++ Y +K+
Sbjct: 946 RYHLQRLGMSVDVTYSLNSACSCLSNVCNKSMSTQLAMILIDKDAWDKECHIL--YTIKK 1003
Query: 1004 QRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPES 1062
+R+ G NLPKIFLLAT +S ++D LKS GI+ +L KPL LS LI C++ +
Sbjct: 1004 RRQNGIKGDPMNLPKIFLLATHLSSNEQDGLKSVGIIDDILMKPLWLSSLIQCYRVSLGT 1063
Query: 1063 SKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLT 1122
K ++K LG+LL KQILVVDDN VNRRVA+G L+K+GA VT V+ GRAA+ L
Sbjct: 1064 ENKRVNRKKVSKLGNLLIDKQILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAALKMLK 1123
Query: 1123 PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAM 1182
PHNFDACFMDLQMPEMDGF+AT QIR LE+E+NE+IA G++SAEMFG++ WH+PILAM
Sbjct: 1124 LPHNFDACFMDLQMPEMDGFEATRQIRCLESEVNEKIACGQASAEMFGSISYWHIPILAM 1183
Query: 1183 TADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
TAD Q+SNE+C+KCGMDDYVSKPFE+E+LY A+ARFF S
Sbjct: 1184 TADSTQSSNEECIKCGMDDYVSKPFEEEKLYMAMARFFKS 1223
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499485|ref|XP_003518570.1| PREDICTED: histidine kinase 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1528 bits (3955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 785/1230 (63%), Positives = 934/1230 (75%), Gaps = 46/1230 (3%)
Query: 12 SSSSRLSASSKLKKASEPLQGPD--RVNRRSTLAFLWLLGFVIVGSICFLLSCDGGAFVG 69
+S+ RL ++ K K +EPL G + R RR L LW GFV +G++ F+LS + +
Sbjct: 78 ASNGRLLSNMKSWKLNEPLHGSNCPRACRRKPL-LLWFFGFVAIGTVWFILSFNSKYLMS 136
Query: 70 NEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTREPGSGMLLHNGI 129
E E CE++ +I LQ NVS Q+HALA+L S SDQI S C E MLL +G+
Sbjct: 137 KENEA---ICEERERILLQRYNVSRKQIHALASLLSGSDQILS-NCIDERRLQMLLGSGM 192
Query: 130 TCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVNVSWKLDHSV-LKN---------- 178
++ + QE QK+ + + V+ ++QCP+ D V +L+ S LKN
Sbjct: 193 VSTPQLMCPENQELQKEHTCVVDTVEPIEQCPILDDYVQTRLELSFPLKNYVSLALRSAL 252
Query: 179 ---ISHARTWS-NCTRDHFKILSFCLFKGCWWFICGMVVICIIVSLLFKSRRNHKHKHDQ 234
++ ++W + + + S L KGCWW VI II+S R+ K K Q
Sbjct: 253 STDLNTVQSWELRVSAIRYHVSSSNLIKGCWW------VIGIIMSYFCLLWRSQKQKLVQ 306
Query: 235 LQPVSQQRQMILQQKQQQQTPH-PPRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHL 293
P +QQ+Q+ + P P R G+WR K+LV+FV LGI S WLFW L +
Sbjct: 307 GHPGAQQKQL-------KHFPRGPSRGTGRWRKKLLVIFVSLGIIGSFWLFWHLNTGIMQ 359
Query: 294 RRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTA 353
RR+ETLA+MCDERARMLQDQFNVSMNHVHALAILVSTFHH KHPSA+DQK FGEYTE TA
Sbjct: 360 RREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKIFGEYTESTA 419
Query: 354 FERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYA 413
FERPLTSGVAYALKVLHS+R FEKQHGW IKKMETE++ LVQDC PE LDPAP+QDEYA
Sbjct: 420 FERPLTSGVAYALKVLHSDRMHFEKQHGWTIKKMETENEALVQDCIPEKLDPAPIQDEYA 479
Query: 414 PVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYN 473
PVIF+QETVSHIVSIDMMSGKED ENILRARASGKGVLT PFKLLKSNHLGVVLTFAVYN
Sbjct: 480 PVIFAQETVSHIVSIDMMSGKEDHENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYN 539
Query: 474 TDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMY 533
T+LP DATPEQR EAT+GYLGASYDVPSLV+KLLHQLASKQTIVVNVYDTTNASAPI MY
Sbjct: 540 TNLPLDATPEQRTEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMY 599
Query: 534 GPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHA 593
G DV DTGLL +S+LDFGDP RKHEMHCRFKQ+PP+PWTAINAS+GV VITLL+GHIF+A
Sbjct: 600 GTDVADTGLLHISSLDFGDPLRKHEMHCRFKQRPPLPWTAINASVGVFVITLLLGHIFYA 659
Query: 594 AINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD 653
AINRIA+VE DY +M ELK RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD
Sbjct: 660 AINRIAKVEADYRQMRELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD 719
Query: 654 AAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKAN 713
Q+D AQTAH SGKDLIS+I++VLDQAKIE+G+LE E V F +LD VLSLFS K+N
Sbjct: 720 ENQMDCAQTAHKSGKDLISVISEVLDQAKIEAGKLELEAVAFDPRAILDEVLSLFSEKSN 779
Query: 714 QKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKV 773
+KGIELA+Y S++VP+VVIGDP RFRQIITNLVGNS+KFT DKGH+FVSVHLA +V++ +
Sbjct: 780 EKGIELAVYASNQVPKVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSVHLASEVKNPL 839
Query: 774 DVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVT 833
+ D VL + LN Q +++ Y+TLSGFPV +RWKSW NF L TN E I+LLV
Sbjct: 840 HIMDAVLREGLNLSQDITNRTYDTLSGFPVCNRWKSWANFTKLSGTNEPEI---IQLLVI 896
Query: 834 VEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGT 893
VEDTG+GIP +AQ RIFTPFMQADSSTSRTYGGTGIGLSISRCLV+LMGGEIGFVSEPG
Sbjct: 897 VEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISRCLVDLMGGEIGFVSEPGI 956
Query: 894 GSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMA 953
GSTFSFT TF +GE SLD +Q SEF+ LR LV+D + IRAEVT+YHLQRL M+
Sbjct: 957 GSTFSFTGTFRKGESTSLDAM-RQNNHFGSEFQELRTLVVDRRKIRAEVTKYHLQRLGMS 1015
Query: 954 VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEIS 1013
V V S+ ACS LS+ C+ S+ LA++LIDKD WDKE ++ Y +K++R+ G
Sbjct: 1016 VDVTYSLNSACSCLSNVCNMSM---LAMILIDKDAWDKEYHIL--YTIKKRRQNGIKGDP 1070
Query: 1014 RNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKK 1072
NLPKIFLLAT +S ++DELKS G++ +L KPL S LI C++E + K ++K
Sbjct: 1071 LNLPKIFLLATHLSSNEQDELKSVGVIDDILMKPLWFSSLIQCYRESLGTENKRVNRKKV 1130
Query: 1073 PSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFM 1132
LG+LL KQILVVDDN VNRRVA+G L+K+GA VT V+ GRAA+ L PHNFDACFM
Sbjct: 1131 SKLGNLLIDKQILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAALKMLELPHNFDACFM 1190
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
DLQMPEMDGF+AT +IR LE+E+NE+IA G++SAEMFGN+ WH+PILAMTAD Q+SNE
Sbjct: 1191 DLQMPEMDGFEATRKIRCLESEVNEKIACGQASAEMFGNISYWHIPILAMTADSTQSSNE 1250
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222
+C+KCGM+DYVSKPFE+EQLY A+ARFF S
Sbjct: 1251 ECIKCGMNDYVSKPFEEEQLYMAMARFFKS 1280
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444494|ref|XP_004140009.1| PREDICTED: histidine kinase 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1492 bits (3862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 773/1250 (61%), Positives = 929/1250 (74%), Gaps = 45/1250 (3%)
Query: 3 MAMTCKLCGSSSSRLSASSKLKKASEPLQGPDRVNR-RSTLAFLWLLGFVIVGSICFLL- 60
M+++CK S++ + A KLKKA E L + + + L + +IV S F
Sbjct: 1 MSLSCKF-SSANGKFPAGFKLKKAKEHLGLLNSTGKWKKKLLCHRIFVLIIVLSSWFSFR 59
Query: 61 --SCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTRE 118
+ + G +++ +++ + L+H NVS NQL ALA+L S+SD+++S+ CT +
Sbjct: 60 WYNVNNGT-----KQKASNLFDEETRTLLRHFNVSKNQLQALASLLSDSDRMSSIGCTND 114
Query: 119 PGSGMLLHNGITCAMKVPYSKKQEFQKQSIWL--AEDVKQMDQCPV-------------- 162
GS NGI CA+++ Y + Q K+ +W +ED + +CP+
Sbjct: 115 FGSDTSQLNGIACALRLLYWE-QGLHKEYVWAEGSED-SNVGECPIPTKKITENSSQLFS 172
Query: 163 EDVNVSWKLDHSV----------LKNISHARTWSNCTRDHFKILSFCLFKGCWWFICGMV 212
+++ V + + SV K A S R H K S L GC+ + ++
Sbjct: 173 DNITVPFATNLSVSLLSTGNQLCRKITEQAGVLSCLLRKHLKNFS-SLLIGCFCVLLEVI 231
Query: 213 VICIIVSLLFKSRRNHKHKHDQLQPVSQQRQMILQQKQQQQTPHPPRSAGKWRMKILVVF 272
V I K N KH QP+ Q+ ++L++KQ QQ P+ AGKWR +L +F
Sbjct: 232 VFQKISGFHLK-LWNKKHPKSN-QPLDHQQWVLLRRKQHQQVKESPKGAGKWRKVLLRIF 289
Query: 273 VLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFH 332
+++GI SVWLF L + LRR+ETLA+MCDERARMLQDQFNVSMNHVHALA+L STFH
Sbjct: 290 IVVGIVGSVWLFRYLNKTAILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFH 349
Query: 333 HRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQ 392
H K PSA+DQKTFGEYTERTAFERPLTSGVAYALKV HSERE FE HGW IKKMETEDQ
Sbjct: 350 HGKQPSAIDQKTFGEYTERTAFERPLTSGVAYALKVNHSEREHFEVMHGWTIKKMETEDQ 409
Query: 393 TLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLT 452
TLVQDC PENL+PAP++DEYAPVIFSQETV+HIVSIDMMSGKEDRENILRARASGKGVLT
Sbjct: 410 TLVQDCNPENLEPAPIRDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLT 469
Query: 453 PPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLAS 512
PFKLLKSNHLGVVLTFAVY+TDLP DATPEQRIEAT+GYLGASYD+PSLVEKLLHQLAS
Sbjct: 470 SPFKLLKSNHLGVVLTFAVYSTDLPLDATPEQRIEATVGYLGASYDIPSLVEKLLHQLAS 529
Query: 513 KQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWT 572
KQTIVVNVYDTTN SAPINMYG D TDTGLL +S LDFGDP R+HEMHCRFK KPP PWT
Sbjct: 530 KQTIVVNVYDTTNESAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWT 589
Query: 573 AINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHE 632
AIN+S+GV++ITLLVGHIFHAAI+RIA+VENDYH+MM+LK+ AEAADVAKSQFLATVSHE
Sbjct: 590 AINSSVGVLIITLLVGHIFHAAISRIAKVENDYHKMMDLKSLAEAADVAKSQFLATVSHE 649
Query: 633 IRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEF 692
IRTPMNGVLGML++LMDT LD+ QLD+AQTAH SGKDLISLIN VLDQAKIESG LE E
Sbjct: 650 IRTPMNGVLGMLKLLMDTNLDSKQLDFAQTAHESGKDLISLINKVLDQAKIESGSLELES 709
Query: 693 VPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKF 752
VPF L D++D V+S FS K+N+KGIELA+YVSD VPEVVIGD GRFRQIIT+LVGNS+KF
Sbjct: 710 VPFDLRDIVDKVVSPFSLKSNEKGIELAVYVSDLVPEVVIGDHGRFRQIITHLVGNSLKF 769
Query: 753 TQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWEN 812
T +KGHI VSVHLAD+VR+ VD D VL++ V S+ T SG PVVDRWKSWE+
Sbjct: 770 THNKGHILVSVHLADEVRATVDFMDIVLKQGSYIVGDTSNNSCTTFSGLPVVDRWKSWED 829
Query: 813 FKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLS 872
FK T+ +E+ I++LVTVEDTGVGIP AQ RIFTPFMQADSSTSRTYGGTGIGLS
Sbjct: 830 FKKFGRTDVVEESKMIRILVTVEDTGVGIPQNAQSRIFTPFMQADSSTSRTYGGTGIGLS 889
Query: 873 ISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALV 932
IS+ LV+LM GEIGFVSEPG GSTFSFTV+F +GE + LD + QY V EF+GLRAL+
Sbjct: 890 ISKRLVDLMDGEIGFVSEPGIGSTFSFTVSFQKGETSILDTRQPQYDVGVREFQGLRALI 949
Query: 933 IDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKE 992
ID+ IRAEVTRYHLQRL ++V + S Q A YLS+T T QLA++LID+D+WDK+
Sbjct: 950 IDNSCIRAEVTRYHLQRLGISVDITLSAQSAYQYLSNTSHTRASTQLAMILIDRDIWDKK 1009
Query: 993 IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSV 1051
+GL H++ K+ + G ++ N PK+F+LAT S + +ELKS G V +L+KPL+L
Sbjct: 1010 MGLKFHHLFKEHVDRSGTDVQMNGPKLFVLATPKSSNEHNELKSSGHVNNVLSKPLQLDA 1069
Query: 1052 LIGCFQEDPESSKKLQQKRKKPS-LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTC 1110
L+ CF+E K+ Q KKPS L +LLK K ILVVDDN VN RVAEGALKK+GAIVTC
Sbjct: 1070 LVSCFREAFGIEKRNQVIIKKPSTLRNLLKEKHILVVDDNAVNIRVAEGALKKYGAIVTC 1129
Query: 1111 VDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFG 1170
V CG+ AV L PPHNFDACFMDLQMPEMDG++AT Q+R +E +N +I SGE S E
Sbjct: 1130 VKCGKDAVALLNPPHNFDACFMDLQMPEMDGYEATRQVRAVECGVNAKITSGEVSIE--N 1187
Query: 1171 NVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
N WH PI AMTAD+IQ NE+C+KCGMD YV+KPFE+EQLY+AVARFF
Sbjct: 1188 NKIHWHTPIFAMTADLIQDMNEECLKCGMDGYVAKPFEEEQLYSAVARFF 1237
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449505124|ref|XP_004162383.1| PREDICTED: histidine kinase 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1491 bits (3859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 773/1250 (61%), Positives = 928/1250 (74%), Gaps = 45/1250 (3%)
Query: 3 MAMTCKLCGSSSSRLSASSKLKKASEPLQGPDRVNR-RSTLAFLWLLGFVIVGSICFLL- 60
M+++CK S++ + A KLKKA E L + + + L + +IV S F
Sbjct: 1 MSLSCKF-SSANGKFPAGFKLKKAKEHLGLLNSTGKWKKKLLCHRIFVLIIVLSSWFSFR 59
Query: 61 --SCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTRE 118
+ + G +++ +++ + L+H NVS NQL ALA+L S+SD+++S+ CT +
Sbjct: 60 WYNVNNGT-----KQKASNLFDEETRTLLRHFNVSKNQLQALASLLSDSDRMSSIGCTND 114
Query: 119 PGSGMLLHNGITCAMKVPYSKKQEFQKQSIWL--AEDVKQMDQCPV-------------- 162
GS NGI CA+++ Y + Q K+ +W +ED + +CP+
Sbjct: 115 FGSDTSQLNGIACALRLLYWE-QGLHKEYVWAEGSED-SNVGECPIPTKKITENSSQLFS 172
Query: 163 EDVNVSWKLDHSV----------LKNISHARTWSNCTRDHFKILSFCLFKGCWWFICGMV 212
+++ V + + SV K A S R H K S L GC+ + ++
Sbjct: 173 DNITVPFATNLSVSLLSAGNQLCRKITEQAGVLSCLLRKHLKNFS-SLLIGCFCVLLEVI 231
Query: 213 VICIIVSLLFKSRRNHKHKHDQLQPVSQQRQMILQQKQQQQTPHPPRSAGKWRMKILVVF 272
V I K N KH QP+ Q+ ++L++KQ QQ P+ AGKWR +L +F
Sbjct: 232 VFQKISGFHLK-LWNKKHPKSN-QPLDHQQWVLLRRKQHQQVKESPKGAGKWRKVLLRIF 289
Query: 273 VLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFH 332
+++GI SVWLF L + LRR+ETLA+MCDERARMLQDQFNVSMNHVHALA+L STFH
Sbjct: 290 IVVGIVGSVWLFRYLNKTAILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFH 349
Query: 333 HRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQ 392
H K PSA+DQKTFGEYTERTAFERPLTSGVAYALKV HSERE FE HGW IKKMETEDQ
Sbjct: 350 HGKQPSAIDQKTFGEYTERTAFERPLTSGVAYALKVNHSEREHFEVMHGWTIKKMETEDQ 409
Query: 393 TLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLT 452
TLVQDC PENL+PAP++DEYAPVIFSQETV+HIVSIDMMSGKEDRENILRARASGKGVLT
Sbjct: 410 TLVQDCNPENLEPAPIRDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLT 469
Query: 453 PPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLAS 512
PFKLLKSNHLGVVLTFAVY+TDLP DATPEQRIEAT+GYLGASYD+PSLVEKLLHQLAS
Sbjct: 470 SPFKLLKSNHLGVVLTFAVYSTDLPLDATPEQRIEATVGYLGASYDIPSLVEKLLHQLAS 529
Query: 513 KQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWT 572
KQTIVVNVYDTTN SAPINMYG D TDTGLL +S LDFGDP R+HEMHCRFK KPP PWT
Sbjct: 530 KQTIVVNVYDTTNESAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWT 589
Query: 573 AINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHE 632
AIN+S+GV++ITLLVGHIFHAAI+RIA+VENDYH+MM+LK+ AEAADVAKSQFLATVSHE
Sbjct: 590 AINSSVGVLIITLLVGHIFHAAISRIAKVENDYHKMMDLKSLAEAADVAKSQFLATVSHE 649
Query: 633 IRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEF 692
IRTPMNGVLGML++LMDT LD+ QLD+AQTAH SGKDLISLIN VLDQAKIESG LE E
Sbjct: 650 IRTPMNGVLGMLKLLMDTNLDSKQLDFAQTAHESGKDLISLINKVLDQAKIESGSLELES 709
Query: 693 VPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKF 752
VPF L D++D V+S FS K+N+KGIELA+YVSD VPEVVIGD GRFRQIIT+LVGNS+KF
Sbjct: 710 VPFDLRDIVDKVVSPFSLKSNEKGIELAVYVSDLVPEVVIGDHGRFRQIITHLVGNSLKF 769
Query: 753 TQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWEN 812
T +KGHI VSVHLAD+VR VD D VL++ V S+ T SG PVVDRWKSWE+
Sbjct: 770 THNKGHILVSVHLADEVRGTVDFMDIVLKQGSYIVGDTSNNSCTTFSGLPVVDRWKSWED 829
Query: 813 FKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLS 872
FK T+ +E+ I++LVTVEDTGVGIP AQ RIFTPFMQADSSTSRTYGGTGIGLS
Sbjct: 830 FKKFGRTDVVEESKMIRILVTVEDTGVGIPQNAQSRIFTPFMQADSSTSRTYGGTGIGLS 889
Query: 873 ISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALV 932
IS+ LV+LM GEIGFVSEPG GSTFSFTV+F +GE + LD + QY V EF+GLRAL+
Sbjct: 890 ISKRLVDLMDGEIGFVSEPGIGSTFSFTVSFQKGETSILDTRQPQYDVGVREFQGLRALI 949
Query: 933 IDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKE 992
ID+ IRAEVTRYHLQRL ++V + S Q A YLS+T T QLA++LID+D+WDK+
Sbjct: 950 IDNSCIRAEVTRYHLQRLGISVDITLSAQSAYQYLSNTSHTRASTQLAMILIDRDIWDKK 1009
Query: 993 IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV-TLLTKPLRLSV 1051
+GL H++ K+ + G ++ N PK+F+LAT S + +ELKS G V +L+KPL+L
Sbjct: 1010 MGLKFHHLFKEHVDRSGTDVQMNGPKLFVLATPKSSNEHNELKSSGHVNNVLSKPLQLDA 1069
Query: 1052 LIGCFQEDPESSKKLQQKRKKPS-LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTC 1110
L+ CF+E K+ Q KKPS L +LLK K ILVVDDN VN RVAEGALKK+GAIVTC
Sbjct: 1070 LVSCFREAFGIEKRNQVIIKKPSTLRNLLKEKHILVVDDNAVNIRVAEGALKKYGAIVTC 1129
Query: 1111 VDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFG 1170
V CG+ AV L PPHNFDACFMDLQMPEMDG++AT Q+R +E +N +I SGE S E
Sbjct: 1130 VKCGKDAVALLNPPHNFDACFMDLQMPEMDGYEATRQVRAVECGVNAKITSGEVSIE--N 1187
Query: 1171 NVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220
N WH PI AMTAD+IQ NE+C+KCGMD YV+KPFE+EQLY+AVARFF
Sbjct: 1188 NKIHWHTPIFAMTADLIQDMNEECLKCGMDGYVAKPFEEEQLYSAVARFF 1237
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357495343|ref|XP_003617960.1| Histidine kinase cytokinin receptor [Medicago truncatula] gi|355519295|gb|AET00919.1| Histidine kinase cytokinin receptor [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1467 bits (3799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 754/1206 (62%), Positives = 906/1206 (75%), Gaps = 50/1206 (4%)
Query: 38 RRSTLAFLWLLGF-VIVGSICFLLSCDGGAFVGNEEEEGRMSCEKKAQIFLQHSNVSHNQ 96
R+ L W+ G V++GS+ F+ S + E +CEK AQ LQ NVS Q
Sbjct: 34 RKLFLLLFWVFGVAVVIGSVWFVFSTFNFKHLIKE-----TACEKSAQTLLQRYNVSKKQ 88
Query: 97 LHALATLFSESDQIASLKCTREPGSGMLLHNGITCAMKVPYSKKQEFQKQSIWLAEDVKQ 156
LH LA+LFS SDQI S C E MLL + I ++ K + QK+ ++AE V
Sbjct: 89 LHVLASLFSGSDQILS-NCIDERRLQMLLSSDIINTPQLMCPKNLDLQKEHRYVAESV-- 145
Query: 157 MDQCPVEDVNVSWKLDHSV-----LKNISHARTWSNCTRDHFKILSFC----------LF 201
+QCP+ D V +L S + +S + K++ C L
Sbjct: 146 -EQCPILDDFVHMRLGLSFPWKAYVTLVSALLSDLVSVLLRGKVMRVCAVVDNVNLSSLI 204
Query: 202 KGCWWFICGMVV------ICIIVSLLFKSRRNHKHKHDQLQPVSQQRQMILQQKQQQQTP 255
KGC + G+++ C++ RRN K K + P + Q+++ Q
Sbjct: 205 KGCCLVLIGIILSHKLSGFCLL-------RRNQKQKVVKEHPTAPQKRI-----QHCMLG 252
Query: 256 HPPRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFN 315
H ++ G R K+LV+F+ +GI S WLF + + RR+E LA+MCDERARMLQDQFN
Sbjct: 253 HS-KATGWRRKKLLVIFMSVGILGSAWLFRYMSSDIAQRREEMLATMCDERARMLQDQFN 311
Query: 316 VSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQ 375
VSMNHVHALAILVSTFHH KHPSAVDQK FGEYTE +AFERPLTSGVAYALKVLHS+R
Sbjct: 312 VSMNHVHALAILVSTFHHGKHPSAVDQKIFGEYTESSAFERPLTSGVAYALKVLHSDRMH 371
Query: 376 FEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKE 435
FEKQHGW IKKMETE++ LVQ+C PENLDPAP+QDEYAPV+F+QETVSHIVSIDMMSGKE
Sbjct: 372 FEKQHGWTIKKMETENEALVQECIPENLDPAPIQDEYAPVVFAQETVSHIVSIDMMSGKE 431
Query: 436 DRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGA 495
DRENILRARASGKGVLT PFKLLKSN+LGVVLTFAVY++ LP DATPEQRIEAT+GYLGA
Sbjct: 432 DRENILRARASGKGVLTSPFKLLKSNYLGVVLTFAVYDSKLPPDATPEQRIEATVGYLGA 491
Query: 496 SYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSR 555
SYDVPSLV+KLLHQLAS+QTI VNVYDTTNAS PI MYG DV DTGLL +S LDFGDP R
Sbjct: 492 SYDVPSLVDKLLHQLASQQTIAVNVYDTTNASDPITMYGTDVLDTGLLHISGLDFGDPLR 551
Query: 556 KHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARA 615
KHEMHCRFK PP PWTA AS+GV VIT L+G+IF+AAINRIA+VE+DY +M ELK RA
Sbjct: 552 KHEMHCRFKHTPPFPWTAFWASVGVFVITFLLGYIFYAAINRIAKVEDDYCQMRELKVRA 611
Query: 616 EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLIN 675
EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT+LD Q+D+AQTAH SGKDLIS+I+
Sbjct: 612 EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDDNQMDFAQTAHTSGKDLISVIS 671
Query: 676 DVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDP 735
+VL QAKIE+G+LE E V FH H +LD VLSLFS K+++KGIEL++Y S++VPEVVIGDP
Sbjct: 672 EVLYQAKIEAGKLELEAVAFHPHAILDEVLSLFSEKSDEKGIELSVYASNQVPEVVIGDP 731
Query: 736 GRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVY 795
RFRQIITNLVGNS+KF +KGH+FVS+HLA++V++ + + D VL + LN Q S++
Sbjct: 732 KRFRQIITNLVGNSLKFIHNKGHVFVSIHLANEVKNPLHIMDAVLRECLNLNQDMSERTC 791
Query: 796 NTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQ 855
NTLSGFPV +RWKSWE F+ L+ + E I+LLVTVEDTG+GIP +AQ RIFTPFMQ
Sbjct: 792 NTLSGFPVGNRWKSWEKFQKLNLAHESET---IQLLVTVEDTGIGIPTDAQSRIFTPFMQ 848
Query: 856 ADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKW 915
ADSSTSRTYGGTGIGLSIS+CLV+LMGGEIGFVSEP GSTFSFT F +GE S+D KW
Sbjct: 849 ADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPEIGSTFSFTGNFRKGETESVDEKW 908
Query: 916 QQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSV 975
Q+ P SEF+GLRALVID + IRAEVTRYHLQRL M+V V +S+Q AC LSDTC++S+
Sbjct: 909 QKNNPLASEFQGLRALVIDRRKIRAEVTRYHLQRLGMSVDVNSSLQSACFSLSDTCNSSM 968
Query: 976 LPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELK 1035
L QLA++LIDKD WDKE ++ Y +K+Q + G S N PKIFLLAT +S +R ELK
Sbjct: 969 LTQLAMILIDKDSWDKESSIL--YAIKKQGQNGVKGDSLNFPKIFLLATHLSPNERKELK 1026
Query: 1036 SDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNR 1094
S GI+ +L KPL SVLI ++E + +K ++K L +LL K+ILVVDDN VNR
Sbjct: 1027 SVGIIDDVLMKPLWQSVLIRYYRESLGTGRKQIDRKKVSQLENLLIHKRILVVDDNAVNR 1086
Query: 1095 RVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENE 1154
+VAEG L+K+GA+VTCVD G+AA+ L PPHNFDACFMDLQMPEMDGF+ T +IR++ENE
Sbjct: 1087 KVAEGVLRKYGAVVTCVDGGKAALKVLKPPHNFDACFMDLQMPEMDGFEVTRRIRYMENE 1146
Query: 1155 INEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYT 1214
+NE+IA GE AEMFGN+ WH+PILAMTADV QASNE+C KCGMDD+VSKPFE+EQLYT
Sbjct: 1147 VNEKIACGEELAEMFGNISYWHIPILAMTADVTQASNEECKKCGMDDFVSKPFEEEQLYT 1206
Query: 1215 AVARFF 1220
AVA F
Sbjct: 1207 AVACVF 1212
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1223 | ||||||
| TAIR|locus:2177261 | 1176 | HK2 "histidine kinase 2" [Arab | 0.917 | 0.954 | 0.602 | 0.0 | |
| TAIR|locus:2059718 | 1080 | WOL "WOODEN LEG" [Arabidopsis | 0.753 | 0.853 | 0.525 | 8.1e-250 | |
| TAIR|locus:2015964 | 1036 | HK3 "histidine kinase 3" [Arab | 0.578 | 0.683 | 0.603 | 4e-225 | |
| DICTYBASE|DDB_G0280961 | 2150 | dhkA "histidine kinase A" [Dic | 0.129 | 0.073 | 0.4 | 4.4e-59 | |
| UNIPROTKB|P0AEC5 | 918 | barA [Escherichia coli K-12 (t | 0.134 | 0.179 | 0.457 | 2.4e-57 | |
| UNIPROTKB|Q9KPC0 | 927 | VC_2453 "Sensor histidine kina | 0.225 | 0.297 | 0.335 | 7.5e-55 | |
| TIGR_CMR|VC_2453 | 927 | VC_2453 "sensor histidine kina | 0.225 | 0.297 | 0.335 | 7.5e-55 | |
| TIGR_CMR|CPS_4165 | 1683 | CPS_4165 "sensory box histidin | 0.128 | 0.093 | 0.405 | 8.5e-53 | |
| TIGR_CMR|CPS_4117 | 948 | CPS_4117 "sensor histidine kin | 0.134 | 0.174 | 0.409 | 1.2e-51 | |
| TIGR_CMR|SPO_0132 | 739 | SPO_0132 "sensor histidine kin | 0.203 | 0.336 | 0.380 | 4.7e-50 |
| TAIR|locus:2177261 HK2 "histidine kinase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3406 (1204.0 bits), Expect = 0., P = 0.
Identities = 697/1156 (60%), Positives = 853/1156 (73%)
Query: 68 VGNEEEEGRMSCEKKAQIFLQHSNVSHNQLHALATLFSESDQIASLKCTREPGSGMLLHN 127
+G ++E SC + ++ +H NV+ +++H L +LFS+SDQ+ S +C +E GM +
Sbjct: 49 LGRSQKEETDSCNGEEKVLYRHQNVTRSEIHDLVSLFSDSDQVTSFECHKESSPGMWTNY 108
Query: 128 GITCAMKVPYSKKQEFQ--KQSIWLAEDVKQMDQCPVEDVNVSWKLDHSVLKNISHARTW 185
GITC++ V S KQE + ++ L + C ++ + + L+ +H
Sbjct: 109 GITCSLSVR-SDKQETRGLPWNLGLGHSISSTS-CMCGNLEPILQQPEN-LEEENHEEGL 165
Query: 186 SNCTRDHFKILSFCLFKGCWWFICGMVVICIIVSLLFKSRRNHKHKHDQLQPVSXXXXXX 245
LS L + WW + V++C + + R + + LQ
Sbjct: 166 EQG-------LSSYL-RNAWWCLILGVLVCHKIYVSHSKARGERKEKVHLQEALAPKKQQ 217
Query: 246 XXXXXXXXTPHPPRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDE 305
R AG+WR IL++ +L G++ SVW FW E++ ++R+ETLA+MCDE
Sbjct: 218 QRAQTSS------RGAGRWRKNILLLGILGGVSFSVWWFWDTNEEIIMKRRETLANMCDE 271
Query: 306 RARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYA 365
RAR+LQDQFNVS+NHVHAL+ILVSTFHH K PSA+DQ+TF EYTERT FERPLTSGVAYA
Sbjct: 272 RARVLQDQFNVSLNHVHALSILVSTFHHGKIPSAIDQRTFEEYTERTNFERPLTSGVAYA 331
Query: 366 LKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHI 425
LKV HSERE+FEK+HGW IKKMETEDQT+VQDC PEN DPAP+QDEYAPVIF+QETVSHI
Sbjct: 332 LKVPHSEREKFEKEHGWAIKKMETEDQTVVQDCVPENFDPAPIQDEYAPVIFAQETVSHI 391
Query: 426 VSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQR 485
VS+DMMSG+EDRENILRARASGKGVLT PFKLLKSNHLGVVLTFAVY+T LP DAT EQR
Sbjct: 392 VSVDMMSGEEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYDTSLPPDATEEQR 451
Query: 486 IEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRV 545
+EAT+GYLGASYD+PSLVEKLLHQLASKQTI V+VYDTTN S I MYG ++ D +
Sbjct: 452 VEATIGYLGASYDMPSLVEKLLHQLASKQTIAVDVYDTTNTSGLIKMYGSEIGDISEQHI 511
Query: 546 SNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDY 605
S+LDFGDPSR HEMHCRFK K P+PWTAI SI V+VIT LVG+I + AINRIA VE D
Sbjct: 512 SSLDFGDPSRNHEMHCRFKHKLPIPWTAITPSILVLVITFLVGYILYEAINRIATVEEDC 571
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
+M ELKARAEAAD+AKSQFLATVSHEIRTPMNGVLGML+MLMDT+LDA Q+DYAQTAH
Sbjct: 572 QKMRELKARAEAADIAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHG 631
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
SGKDL SLIN+VLDQAKIESGRLE E VPF + +LDNV SL S KAN+KGIELA+YVS
Sbjct: 632 SGKDLTSLINEVLDQAKIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVSS 691
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAXXXXXXXXXXXXXLEKSLN 785
+VP+VV+GDP RFRQIITNLVGNSIKFTQ++GHIF+SVHLA L++ L
Sbjct: 692 QVPDVVVGDPSRFRQIITNLVGNSIKFTQERGHIFISVHLADEVKEPLTIEDAVLKQRLA 751
Query: 786 SVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845
+S + T+SGFP V+ W SW+NFK +T + +IKLLVTVEDTGVGIP++A
Sbjct: 752 LGCSESGE---TVSGFPAVNAWGSWKNFKTCYSTESQNS-DQIKLLVTVEDTGVGIPVDA 807
Query: 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPXXXXXXXXXXXXXX 905
Q RIFTPFMQADSSTSRTYGGTGIGLSIS+ LVELM GE+GFVSEP
Sbjct: 808 QGRIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTGVFGK 867
Query: 906 XXRNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACS 965
N+ K +++ + EF GLRALVID+++IRAEVTRY L+RL ++ + +S+++AC
Sbjct: 868 AETNTSITKLERFDLAIQEFTGLRALVIDNRNIRAEVTRYELRRLGISADIVSSLRMAC- 926
Query: 966 YLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATS 1025
TC S L LA++LIDKD W+KE VL + + + + +R +PKIFLLATS
Sbjct: 927 ----TCCISKLENLAMILIDKDAWNKEEFSVLDELFTRSK----VTFTR-VPKIFLLATS 977
Query: 1026 ISETDRDELKSDGIVT-LLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQI 1084
+ T+R E+KS G++ ++ KPLR+SVLI C QE + KK Q R++ +LGHLL+ KQI
Sbjct: 978 ATLTERSEMKSTGLIDEVVIKPLRMSVLICCLQETLVNGKKRQPNRQRRNLGHLLREKQI 1037
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
LVVDDN+VNRRVAEGALKK+GAIVTCV+ G+AA+ L PPHNFDACFMDLQMPEMDGF+A
Sbjct: 1038 LVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDGFEA 1097
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
T ++R LE EIN++IASGE SAEMF WHVPILAMTADVIQA++E+CMKCGMD YVS
Sbjct: 1098 TRRVRELEREINKKIASGEVSAEMFCKFSSWHVPILAMTADVIQATHEECMKCGMDGYVS 1157
Query: 1205 KPFEDEQLYTAVARFF 1220
KPFE+E LYTAVARFF
Sbjct: 1158 KPFEEEVLYTAVARFF 1173
|
|
| TAIR|locus:2059718 WOL "WOODEN LEG" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2406 (852.0 bits), Expect = 8.1e-250, P = 8.1e-250
Identities = 512/975 (52%), Positives = 663/975 (68%)
Query: 267 KILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAI 326
K L++++++ IS ++ + + +RR+E L SMCD+RARMLQDQF+VS+NHVHALAI
Sbjct: 129 KALILWIIIVGFISSGIYQWMDDANKIRREEVLVSMCDQRARMLQDQFSVSVNHVHALAI 188
Query: 327 LVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKK 386
LVSTFH+ K+PSA+DQ+TF EYT RTAFERPL SGVAYA KV++ ERE FE+QH W IK
Sbjct: 189 LVSTFHYHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKT 248
Query: 387 METEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARAS 446
M+ + P+PV+DEYAPVIFSQ++VS++ S+DMMSG+EDRENILRAR +
Sbjct: 249 MDRGE-------------PSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARET 295
Query: 447 GKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKL 506
GK VLT PF+LL+++HLGVVLTF VY + LP++ T E+RI AT GYLG ++DV SLVE L
Sbjct: 296 GKAVLTSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENL 355
Query: 507 LHQLASKQTIVVNVYDTTNASAPINMYG--PDVTDTGLLRVSNLDFGDPSRKHEMHCRFK 564
L QLA Q IVV+VYD TNAS P+ MYG + D L S LDFGDP RKH+M CR+
Sbjct: 356 LGQLAGNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYH 415
Query: 565 QKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQ 624
QK P+P + I LVG+I + A I +VE+D+HEM ELK RAEAADVAKSQ
Sbjct: 416 QKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQ 475
Query: 625 FLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIE 684
FLATVSHEIRTPMNG+LGML ML+DTEL + Q DYAQTA GK LI+LIN+VLD+AKIE
Sbjct: 476 FLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIE 535
Query: 685 SGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITN 744
+G+LE E VPF + +LD+VLSLFS ++ K IELA++VSD+VPE+V GD GRFRQII N
Sbjct: 536 AGKLELESVPFDIRSILDDVLSLFSEESRNKSIELAVFVSDKVPEIVKGDSGRFRQIIIN 595
Query: 745 LVGNSIKFTQDKGHIFVSVHLAXXXXXXXX---XXXXXLEKSLNSVQHKSDKVYNTLSGF 801
LVGNS+KFT+ KGHIFV VHLA + + + V +S YNTLSG+
Sbjct: 596 LVGNSVKFTE-KGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVSKQSS--YNTLSGY 652
Query: 802 PVVDRWKSWENFK-MLDNTNTMEQL---GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD 857
D SW++FK ++ ++ + ++L+V++EDTG+GIPL AQ R+F PFMQAD
Sbjct: 653 EAADGRNSWDSFKHLVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLVAQGRVFMPFMQAD 712
Query: 858 SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPXXXXXXXXXXXXXXXXR----NSLDP 913
SSTSR YGGTGIGLSIS+CLVELM G+I F+S P + N +
Sbjct: 713 SSTSRNYGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKK 772
Query: 914 KWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLA----CSYLSD 969
+++P S F+G++A+V+D K +RA VTRYH++RL + V V S++ A ++ +
Sbjct: 773 PNVEHLP--STFKGMKAIVVDAKPVRAAVTRYHMKRLGINVDVVTSLKTAVVAAAAFERN 830
Query: 970 TCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISET 1029
PQL ++L++KD W L R G + PK+ L AT+I+ +
Sbjct: 831 GSPLPTKPQLDMILVEKDSWISTEDNDSEIRLLNSRTNGN--VHHKSPKLALFATNITNS 888
Query: 1030 DRDELKSDGIV-TLLTKPLRLSVLIGCFQEDPESSKKLQQ--KRKKPS-LGHLLKGKQIL 1085
+ D KS G T++ KPLR S++ C Q+ E K QQ + P+ L LL GK+IL
Sbjct: 889 EFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLLTGKKIL 948
Query: 1086 VVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQAT 1145
VVDDN+VNRRVA GALKK GA V C + G+ A+ L PH FDACFMD+QMP+MDGF+AT
Sbjct: 949 VVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQMDGFEAT 1008
Query: 1146 WQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205
QIR +E E E+ ++ E WH+PILAMTADVI A+ E+C+K GMD YVSK
Sbjct: 1009 RQIRMMEKETKEK-----TNLE-------WHLPILAMTADVIHATYEECLKSGMDGYVSK 1056
Query: 1206 PFEDEQLYTAVARFF 1220
PFE+E LY +VA+ F
Sbjct: 1057 PFEEENLYKSVAKSF 1071
|
|
| TAIR|locus:2015964 HK3 "histidine kinase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2173 (770.0 bits), Expect = 4.0e-225, P = 4.0e-225
Identities = 443/734 (60%), Positives = 551/734 (75%)
Query: 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHA 323
WR K++VV+V+ + +S+W FW + +RKETLASMCDERARMLQDQFNVSMNHV A
Sbjct: 92 WR-KLVVVWVVFWVLVSIWTFWYFSSQAMEKRKETLASMCDERARMLQDQFNVSMNHVQA 150
Query: 324 LAILVSTFHHRKHPSAVDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWK 383
++IL+STFHH K PSA+DQ+TF EYT+RT+FERPLTSGVAYA++VLHSERE+FE+Q GW
Sbjct: 151 MSILISTFHHGKIPSAIDQRTFSEYTDRTSFERPLTSGVAYAMRVLHSEREEFERQQGWT 210
Query: 384 IKKMETEDQTLVQ--DCTPENLDPAPVQDEYAPVIFSQETVSHIVSIDMMSGKEDRENIL 441
I+KM + +Q V D E L+P+PVQ+EYAPVIF+Q+TVSH+VS+DM+SGKEDREN+L
Sbjct: 211 IRKMYSLEQNPVHKDDYDLEALEPSPVQEEYAPVIFAQDTVSHVVSLDMLSGKEDRENVL 270
Query: 442 RARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPS 501
RAR+SGKGVLT PF L+K+N LGV+LTFAVY DLP +ATP++RIEAT GYLG +D+ S
Sbjct: 271 RARSSGKGVLTAPFPLIKTNRLGVILTFAVYKRDLPSNATPKERIEATNGYLGGVFDIES 330
Query: 502 LVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHC 561
LVE LL QLASKQTI+VNVYD TN S PI+MYG +V+ GL RVS L FGDP RKHEM C
Sbjct: 331 LVENLLQQLASKQTILVNVYDITNHSQPISMYGTNVSADGLERVSPLIFGDPLRKHEMRC 390
Query: 562 RFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVA 621
RFKQKPP P ++ S G++VI LLV HI HA ++RI +VE D +M +LK +AEAADVA
Sbjct: 391 RFKQKPPWPVLSMVTSFGILVIALLVAHIIHATVSRIHKVEEDCDKMKQLKKKAEAADVA 450
Query: 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681
KSQFLATVSHEIRTPMNGVLGML MLMDTELD Q DY +TA SGK L+SLIN+VLDQA
Sbjct: 451 KSQFLATVSHEIRTPMNGVLGMLHMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 510
Query: 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741
KIESG+LE E V F L +LD+VLSLFSSK+ QKG+ELA+Y+SDRVP+++IGDPGRFRQI
Sbjct: 511 KIESGKLELEEVRFDLRGILDDVLSLFSSKSQQKGVELAVYISDRVPDMLIGDPGRFRQI 570
Query: 742 ITNLVGNSIKFTQDKGHIFVSVHLAXXXXXXXXXXXXXLEKSLNSVQHKSDKVYNTLSGF 801
+TNL+GNSIKFT+ KGHIFV+VHL L +S++ S + +TLSG
Sbjct: 571 LTNLMGNSIKFTE-KGHIFVTVHLVDE-----------LFESIDGETASSPE--STLSGL 616
Query: 802 PVVDRWKSWENFKMLDNTN--TMEQLGR-IKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858
PV DR +SWENFK + + E I L+V+VEDTGVGIP+EAQ RIFTPFMQ
Sbjct: 617 PVADRQRSWENFKAFSSNGHRSFEPSPPDINLIVSVEDTGVGIPVEAQSRIFTPFMQVGP 676
Query: 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPXXXXXXXXXXXXXXXXRNSLDPKWQQY 918
S SRT+GGTGIGLSIS+CLV LM GEIGF S P + + + K
Sbjct: 677 SISRTHGGTGIGLSISKCLVGLMKGEIGFSSTPKVGSTFTFTAVFSNGMQPA-ERKNDNN 735
Query: 919 VPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQ 978
P SEFRG++A+V+D + RA+V+ YH QRL + V V ++ A YL +T
Sbjct: 736 QPIFSEFRGMKAVVVDHRPARAKVSWYHFQRLGIRVEVVPRVEQALHYLKIGTTT----- 790
Query: 979 LALVLIDKDVWDKE 992
+ ++LI++++W++E
Sbjct: 791 VNMILIEQEIWNRE 804
|
|
| DICTYBASE|DDB_G0280961 dhkA "histidine kinase A" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 331 (121.6 bits), Expect = 4.4e-59, Sum P(6) = 4.4e-59
Identities = 64/160 (40%), Positives = 103/160 (64%)
Query: 604 DYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTA 663
D ++ K AE A+ AKS F+ATVSHE+RTP++GV+G+ +L++T L Q DY QT
Sbjct: 1369 DMQRLILEKEAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDLLLETNLSEEQRDYVQTI 1428
Query: 664 HNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYV 723
S + L+++IND+LD +K+ES +L+ E +PF + + V+ + S AN +++ + V
Sbjct: 1429 QKSSQALLTIINDILDYSKLESRQLKMETLPFSIIETCQAVIHMLSVAANDD-VDILLRV 1487
Query: 724 SDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV 763
VP ++ GD R RQ++ NL+ N+IKFT +GH+ +
Sbjct: 1488 PPNVPRIIFGDAMRMRQVLLNLLSNAIKFTS-RGHVLTDI 1526
|
|
| UNIPROTKB|P0AEC5 barA [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 370 (135.3 bits), Expect = 2.4e-57, Sum P(5) = 2.4e-57
Identities = 76/166 (45%), Positives = 113/166 (68%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q+E E+ K RA+ A KS+FLA +SHE+RTP+NGV+G ++ + TEL Q
Sbjct: 269 LEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQR 328
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
D+ T S +L+++INDVLD +K+E+G+L E +PF L LD V++L + ++ KG+
Sbjct: 329 DHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGL 388
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV 763
EL + + VP+ VIGDP R +QIITNLVGN+IKFT++ G+I + V
Sbjct: 389 ELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTEN-GNIDILV 433
|
|
| UNIPROTKB|Q9KPC0 VC_2453 "Sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 7.5e-55, Sum P(4) = 7.5e-55
Identities = 100/298 (33%), Positives = 167/298 (56%)
Query: 479 DATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVT 538
DA P + +GY+ D+ SL + ++ S ++V + A MY DVT
Sbjct: 147 DANPATPV---MGYIAIELDLSSLRLQQYQEIFSAGLVLVIGILLSGVFASRLMY--DVT 201
Query: 539 DTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRI 598
+ + N+ D R+ + R + K + I + ++L H+ + I
Sbjct: 202 RP-ITHMKNMV--DRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHV--EMQHSI 256
Query: 599 AQVENDYHEMME-----------LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQML 647
Q +D E +E K RA+ A KS+FLA +SHE+RTP+NGV+G + +
Sbjct: 257 DQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQM 316
Query: 648 MDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSL 707
+ T+L +Q DY QT S +L+++IND+LD +K+E+G+L E +PF +VL+ V++L
Sbjct: 317 LKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNL 376
Query: 708 FSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL 765
++ A++KG+E+ + + ++P V+GDP R +Q++TNLVGNSIKFT+ +G+I VSV +
Sbjct: 377 QATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTE-RGNIDVSVEM 433
|
|
| TIGR_CMR|VC_2453 VC_2453 "sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 7.5e-55, Sum P(4) = 7.5e-55
Identities = 100/298 (33%), Positives = 167/298 (56%)
Query: 479 DATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVT 538
DA P + +GY+ D+ SL + ++ S ++V + A MY DVT
Sbjct: 147 DANPATPV---MGYIAIELDLSSLRLQQYQEIFSAGLVLVIGILLSGVFASRLMY--DVT 201
Query: 539 DTGLLRVSNLDFGDPSRKHEMHCRFKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRI 598
+ + N+ D R+ + R + K + I + ++L H+ + I
Sbjct: 202 RP-ITHMKNMV--DRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHV--EMQHSI 256
Query: 599 AQVENDYHEMME-----------LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQML 647
Q +D E +E K RA+ A KS+FLA +SHE+RTP+NGV+G + +
Sbjct: 257 DQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQM 316
Query: 648 MDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSL 707
+ T+L +Q DY QT S +L+++IND+LD +K+E+G+L E +PF +VL+ V++L
Sbjct: 317 LKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNL 376
Query: 708 FSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL 765
++ A++KG+E+ + + ++P V+GDP R +Q++TNLVGNSIKFT+ +G+I VSV +
Sbjct: 377 QATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTE-RGNIDVSVEM 433
|
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| TIGR_CMR|CPS_4165 CPS_4165 "sensory box histidine kinase/response regulator" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 332 (121.9 bits), Expect = 8.5e-53, Sum P(4) = 8.5e-53
Identities = 64/158 (40%), Positives = 102/158 (64%)
Query: 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG 667
++E K ++ A AKS FLA +SHEIRTPMN ++GM + + ELD +Y + +
Sbjct: 931 LLEAKRISDDASKAKSDFLANMSHEIRTPMNAIMGMSHLALGCELDRKPKNYVTKVYKAA 990
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
+ L+ +IND+LD +KIE+G+L+ E + F LHD ++ ++ KA +K +EL +S V
Sbjct: 991 ESLLGIINDILDFSKIEAGKLDIEVIEFSLHDTFADLANIIGLKAGEKNLELLFDISPDV 1050
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL 765
P + GDP R QI+ NL GN++KFT+ +G + +SV++
Sbjct: 1051 PVNLKGDPLRLNQILINLAGNAVKFTE-QGQVVISVNV 1087
|
|
| TIGR_CMR|CPS_4117 CPS_4117 "sensor histidine kinase/response regulator" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 346 (126.9 bits), Expect = 1.2e-51, Sum P(4) = 1.2e-51
Identities = 68/166 (40%), Positives = 110/166 (66%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQL 657
+ Q E E+ K +A+ A+ KS+FLA +SHE+RTP+NGV+G + ++ T L Q
Sbjct: 280 LEQFEIQNVELSISKRKAQEANRVKSEFLANMSHELRTPLNGVIGFTRQVLKTPLTENQR 339
Query: 658 DYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGI 717
DY QT S +L+++IND+LD +K+++G++ E +PF L + +D L+L + A++K I
Sbjct: 340 DYLQTIDRSANNLLTIINDILDFSKLDAGKMVTENIPFSLRESIDETLTLLAPSAHKKNI 399
Query: 718 ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV 763
EL+I + +P+ ++GD R +QIITNLV N+IKFT +G + V +
Sbjct: 400 ELSINLPQELPDSLVGDTMRIKQIITNLVSNAIKFTP-QGSVAVDI 444
|
|
| TIGR_CMR|SPO_0132 SPO_0132 "sensor histidine kinase/response regulator" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 4.7e-50, Sum P(3) = 4.7e-50
Identities = 100/263 (38%), Positives = 142/263 (53%)
Query: 509 QLASKQTIVVNVYDTTNASAPINMYGPDV---TDTGLLRVSNLDFGDPSRKHEMHCRFKQ 565
+L T +NV+D + AP Y + T+ G++ L + MH R+
Sbjct: 100 KLIGANTAYLNVFDGLDEVAPGISYMRILQLMTEEGIIDTGEL--AAEEWRQMMHERWIS 157
Query: 566 KPPVPWTAINASIGVVVITLLVGH---IFHAAINRIAQVENDYHEMMELKARAEAADVAK 622
P P + V + GH + A+N + V + E+ + +AEAA+ AK
Sbjct: 158 PTPEPVVIRMWNDQYVKMIDQRGHGGDVVSLALNITSTVRYEA-ELRAAREKAEAANRAK 216
Query: 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
S FLA +SHEIRTPMNGV+GM ++L DT LD Q YA T NSG+ L+ +INDVLD +K
Sbjct: 217 SAFLANMSHEIRTPMNGVVGMAELLCDTALDEEQQLYASTIKNSGEALLVIINDVLDYSK 276
Query: 683 IESGR--LEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
IE+ + L PE PF L + V L KG+ L + +P + +GDPGR RQ
Sbjct: 277 IEAEKMMLHPE--PFDLERCIHEVAMLMQPIVRDKGLTLLVDYDLFLPTLFVGDPGRVRQ 334
Query: 741 IITNLVGNSIKFTQDKGHIFVSV 763
++TNL+GN++KFT KGHI + V
Sbjct: 335 VLTNLLGNAVKFTT-KGHILIRV 356
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C5U2 | AHK2_ARATH | 2, ., 7, ., 1, 3, ., 3 | 0.6082 | 0.9329 | 0.9702 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.13 | 0.963 |
| 3rd Layer | 2.7.13.3 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.XIV.3720.1 | histidine kinase cytokinin receptor (958 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1223 | |||
| PRK11107 | 919 | PRK11107, PRK11107, hybrid sensory histidine kinas | 1e-104 | |
| PRK15347 | 921 | PRK15347, PRK15347, two component system sensor ki | 9e-52 | |
| TIGR02956 | 968 | TIGR02956, TMAO_torS, TMAO reductase sytem sensor | 7e-46 | |
| pfam03924 | 190 | pfam03924, CHASE, CHASE domain | 3e-39 | |
| COG0642 | 336 | COG0642, BaeS, Signal transduction histidine kinas | 1e-33 | |
| PRK11466 | 914 | PRK11466, PRK11466, hybrid sensory histidine kinas | 3e-33 | |
| PRK11091 | 779 | PRK11091, PRK11091, aerobic respiration control se | 1e-28 | |
| smart01079 | 176 | smart01079, CHASE, This domain is found in the ext | 1e-26 | |
| PRK10841 | 924 | PRK10841, PRK10841, hybrid sensory kinase in two-c | 9e-26 | |
| cd00156 | 113 | cd00156, REC, Signal receiver domain; originally t | 1e-24 | |
| smart00387 | 111 | smart00387, HATPase_c, Histidine kinase-like ATPas | 2e-22 | |
| COG0784 | 130 | COG0784, CheY, FOG: CheY-like receiver [Signal tra | 3e-22 | |
| pfam00072 | 111 | pfam00072, Response_reg, Response regulator receiv | 3e-22 | |
| cd00075 | 103 | cd00075, HATPase_c, Histidine kinase-like ATPases; | 2e-21 | |
| pfam02518 | 111 | pfam02518, HATPase_c, Histidine kinase-, DNA gyras | 1e-20 | |
| PRK09959 | 1197 | PRK09959, PRK09959, hybrid sensory histidine kinas | 3e-20 | |
| pfam00512 | 66 | pfam00512, HisKA, His Kinase A (phospho-acceptor) | 9e-20 | |
| smart00388 | 66 | smart00388, HisKA, His Kinase A (phosphoacceptor) | 1e-19 | |
| PRK09303 | 380 | PRK09303, PRK09303, adaptive-response sensory kina | 3e-19 | |
| TIGR01386 | 457 | TIGR01386, cztS_silS_copS, heavy metal sensor kina | 3e-19 | |
| PRK11091 | 779 | PRK11091, PRK11091, aerobic respiration control se | 7e-19 | |
| TIGR02966 | 333 | TIGR02966, phoR_proteo, phosphate regulon sensor k | 9e-19 | |
| COG0642 | 336 | COG0642, BaeS, Signal transduction histidine kinas | 9e-18 | |
| COG4251 | 750 | COG4251, COG4251, Bacteriophytochrome (light-regul | 1e-16 | |
| COG5002 | 459 | COG5002, VicK, Signal transduction histidine kinas | 1e-16 | |
| PRK10841 | 924 | PRK10841, PRK10841, hybrid sensory kinase in two-c | 1e-15 | |
| cd00082 | 65 | cd00082, HisKA, Histidine Kinase A (dimerization/p | 2e-15 | |
| COG2204 | 464 | COG2204, AtoC, Response regulator containing CheY- | 2e-13 | |
| COG2205 | 890 | COG2205, KdpD, Osmosensitive K+ channel histidine | 2e-13 | |
| PRK15347 | 921 | PRK15347, PRK15347, two component system sensor ki | 9e-13 | |
| TIGR02956 | 968 | TIGR02956, TMAO_torS, TMAO reductase sytem sensor | 2e-12 | |
| TIGR02966 | 333 | TIGR02966, phoR_proteo, phosphate regulon sensor k | 2e-12 | |
| PRK13837 | 828 | PRK13837, PRK13837, two-component VirA-like sensor | 1e-11 | |
| PRK11006 | 430 | PRK11006, phoR, phosphate regulon sensor protein; | 2e-11 | |
| PRK11360 | 607 | PRK11360, PRK11360, sensory histidine kinase AtoS; | 8e-11 | |
| smart00448 | 55 | smart00448, REC, cheY-homologous receiver domain | 1e-10 | |
| COG0745 | 229 | COG0745, OmpR, Response regulators consisting of a | 2e-10 | |
| COG2205 | 890 | COG2205, KdpD, Osmosensitive K+ channel histidine | 4e-10 | |
| COG2197 | 211 | COG2197, CitB, Response regulator containing a Che | 4e-10 | |
| PRK11361 | 457 | PRK11361, PRK11361, acetoacetate metabolism regula | 6e-10 | |
| PRK09835 | 482 | PRK09835, PRK09835, sensor kinase CusS; Provisiona | 8e-10 | |
| PRK10604 | 433 | PRK10604, PRK10604, sensor protein RstB; Provision | 9e-10 | |
| PRK10364 | 457 | PRK10364, PRK10364, sensor protein ZraS; Provision | 1e-09 | |
| PRK11360 | 607 | PRK11360, PRK11360, sensory histidine kinase AtoS; | 1e-08 | |
| PRK11091 | 779 | PRK11091, PRK11091, aerobic respiration control se | 2e-08 | |
| PRK10490 | 895 | PRK10490, PRK10490, sensor protein KdpD; Provision | 8e-08 | |
| PRK10841 | 924 | PRK10841, PRK10841, hybrid sensory kinase in two-c | 2e-07 | |
| PRK10549 | 466 | PRK10549, PRK10549, signal transduction histidine- | 2e-07 | |
| COG3852 | 363 | COG3852, NtrB, Signal transduction histidine kinas | 4e-07 | |
| PRK11100 | 475 | PRK11100, PRK11100, sensory histidine kinase CreC; | 4e-07 | |
| PRK10618 | 894 | PRK10618, PRK10618, phosphotransfer intermediate p | 1e-06 | |
| COG4191 | 603 | COG4191, COG4191, Signal transduction histidine ki | 2e-06 | |
| PRK11073 | 348 | PRK11073, glnL, nitrogen regulation protein NR(II) | 2e-06 | |
| PRK11086 | 542 | PRK11086, PRK11086, sensory histidine kinase DcuS; | 3e-06 | |
| COG3706 | 435 | COG3706, PleD, Response regulator containing a Che | 3e-06 | |
| PRK13557 | 540 | PRK13557, PRK13557, histidine kinase; Provisional | 6e-06 | |
| TIGR03785 | 703 | TIGR03785, marine_sort_HK, proteobacterial dedicat | 7e-06 | |
| PRK09468 | 239 | PRK09468, ompR, osmolarity response regulator; Pro | 9e-06 | |
| COG3290 | 537 | COG3290, CitA, Signal transduction histidine kinas | 2e-05 | |
| PRK15479 | 221 | PRK15479, PRK15479, transcriptional regulatory pro | 2e-05 | |
| PRK10490 | 895 | PRK10490, PRK10490, sensor protein KdpD; Provision | 3e-05 | |
| TIGR02916 | 679 | TIGR02916, PEP_his_kin, putative PEP-CTERM system | 3e-05 | |
| PRK10365 | 441 | PRK10365, PRK10365, transcriptional regulatory pro | 4e-05 | |
| COG3852 | 363 | COG3852, NtrB, Signal transduction histidine kinas | 5e-05 | |
| PRK09470 | 461 | PRK09470, cpxA, two-component sensor protein; Prov | 8e-05 | |
| PRK09467 | 435 | PRK09467, envZ, osmolarity sensor protein; Provisi | 9e-05 | |
| PRK09581 | 457 | PRK09581, pleD, response regulator PleD; Reviewed | 1e-04 | |
| PRK10549 | 466 | PRK10549, PRK10549, signal transduction histidine- | 2e-04 | |
| TIGR01818 | 463 | TIGR01818, ntrC, nitrogen regulation protein NR(I) | 2e-04 | |
| TIGR01387 | 218 | TIGR01387, cztR_silR_copR, heavy metal response re | 2e-04 | |
| CHL00148 | 240 | CHL00148, orf27, Ycf27; Reviewed | 2e-04 | |
| TIGR02938 | 494 | TIGR02938, nifL_nitrog, nitrogen fixation negative | 2e-04 | |
| PRK09959 | 1197 | PRK09959, PRK09959, hybrid sensory histidine kinas | 3e-04 | |
| PRK10610 | 129 | PRK10610, PRK10610, chemotaxis regulatory protein | 5e-04 | |
| PRK11100 | 475 | PRK11100, PRK11100, sensory histidine kinase CreC; | 8e-04 | |
| COG5000 | 712 | COG5000, NtrY, Signal transduction histidine kinas | 8e-04 | |
| COG4191 | 603 | COG4191, COG4191, Signal transduction histidine ki | 0.001 | |
| COG3437 | 360 | COG3437, COG3437, Response regulator containing a | 0.001 | |
| COG3947 | 361 | COG3947, COG3947, Response regulator containing Ch | 0.002 | |
| COG0784 | 130 | COG0784, CheY, FOG: CheY-like receiver [Signal tra | 0.003 | |
| PRK00742 | 354 | PRK00742, PRK00742, chemotaxis-specific methyleste | 0.003 |
| >gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
Score = 351 bits (903), Expect = e-104
Identities = 203/668 (30%), Positives = 296/668 (44%), Gaps = 166/668 (24%)
Query: 595 INRIAQVENDYHEMM-----------------------EL---KARA-EAADVAKSQFLA 627
IN +A + YHE M EL K RA EAA + KS+FLA
Sbjct: 240 INAMAMSLSAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARI-KSEFLA 298
Query: 628 TVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGR 687
+SHE+RTP+NGV+G + + T L Q DY QT S +L+++IND+LD +K+E+G+
Sbjct: 299 NMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGK 358
Query: 688 LEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVG 747
L E +PF L + LD V++L + A++KG+EL + + VP+ VIGDP R +QIITNLVG
Sbjct: 359 LVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVG 418
Query: 748 NSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRW 807
N+IKFT + G+I D+ V+ ++
Sbjct: 419 NAIKFT-ESGNI--------DIL----------------VELRA---------------- 437
Query: 808 KSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGT 867
L NT +++L V + DTG+GI Q ++F F QAD+S SR +GGT
Sbjct: 438 --------LSNT-------KVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGT 482
Query: 868 GIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRG 927
G+GL I++ LV MGG+I F S+P GSTF F + +D G
Sbjct: 483 GLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPIIDG------LPTDCLAG 536
Query: 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL-----V 982
R L ++ S A+ T L L + L +Y L QL +
Sbjct: 537 KRLLYVEPNSAAAQAT---LDIL-------SETPLEVTYSPT------LSQLPEAHYDIL 580
Query: 983 LIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTL 1042
L+ V +E +LH L + + + L + ++LK DG
Sbjct: 581 LLGLPVTFREPLTMLHERLAKAKSM--------TDFLILALPCHEQVLAEQLKQDGADAC 632
Query: 1043 LTKPL---RLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEG 1099
L+KPL RL + + + L ++ VDDN N
Sbjct: 633 LSKPLSHTRLLPALLEPCHHKQPPLLPPTDESRLPL-------TVMAVDDNPAN------ 679
Query: 1100 ALKKHGA--------IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHL 1151
LK GA +V C D G AV + FD MD+QMP MDG +A IR L
Sbjct: 680 -LKLIGALLEEQVEHVVLC-DSGHQAV-EQAKQRPFDLILMDIQMPGMDGIRACELIRQL 736
Query: 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ 1211
+ N+ + PI+A+TA + E+ + GMDDY++KP ++
Sbjct: 737 PH--NQ------------------NTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAM 776
Query: 1212 LYTAVARF 1219
L + R+
Sbjct: 777 LKQVLLRY 784
|
Length = 919 |
| >gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (504), Expect = 9e-52
Identities = 101/302 (33%), Positives = 144/302 (47%), Gaps = 69/302 (22%)
Query: 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
+ E K RAE A+ KS+ L T+SHEIRTP+NGVLG L++L +T L A Q+D A TA
Sbjct: 382 QALAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQ 441
Query: 666 SGKDLISLINDVLDQAKIESGRLE--PEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYV 723
L+++IN++LD ++IESG++ E L +LD + A K + L +V
Sbjct: 442 CTLSLLAIINNLLDFSRIESGQMTLSLEETA--LLPLLDQAMLTIQGPAQSKSLTLRTFV 499
Query: 724 SDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKS 783
VP + D R RQI+ NL+GN++KFT+ G I +
Sbjct: 500 GAHVPLYLHLDSLRLRQILVNLLGNAVKFTET-GGIRL---------------------- 536
Query: 784 LNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPL 843
V+ ++ F V D TG GI +
Sbjct: 537 --RVKRHEQQLC-----FTVED-------------------------------TGCGIDI 558
Query: 844 EAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903
+ Q +IFTPF QAD+ GTG+GL+I+ L ++MGGE+ S PG GS FS +
Sbjct: 559 QQQQQIFTPFYQADT----HSQGTGLGLTIASSLAKMMGGELTLFSTPGVGSCFSLVLPL 614
Query: 904 TE 905
E
Sbjct: 615 NE 616
|
Length = 921 |
| >gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 7e-46
Identities = 81/168 (48%), Positives = 114/168 (67%), Gaps = 3/168 (1%)
Query: 612 KARAEA--ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
KARAEA A+ AKS FLAT+SHEIRTP+NG+LG L++L DT L + Q Y Q + SG+
Sbjct: 452 KARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGES 511
Query: 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPE 729
L+ ++ND+LD +KIE+G L PF L+ +LD+V L S+A KGI+L + + +++P
Sbjct: 512 LLDILNDILDYSKIEAGHLSISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPN 571
Query: 730 VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
GD R RQ++ NLVGN+IKFT D+G + + V L DD +V+D
Sbjct: 572 WWQGDGPRIRQVLINLVGNAIKFT-DRGSVVLRVSLNDDSSLLFEVED 618
|
This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072) [Signal transduction, Two-component systems]. Length = 968 |
| >gnl|CDD|217796 pfam03924, CHASE, CHASE domain | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 3e-39
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 22/204 (10%)
Query: 337 PSAVDQKTFGEYTER--TAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTL 394
+V + F Y P G+ +A +V +ER FE Q +
Sbjct: 2 SDSVSRAEFEAYANSLQLLRRLPGIQGLGWAPRVPPAERAAFEAQLRAEGFPDF------ 55
Query: 395 VQDCTPENLDPAPVQDEYAPVIFSQETVS--HIVSIDMMSGKEDRENILRARASGKGVLT 452
N+ PA + Y P+ + + + +D+ S RE + RAR +G+ VLT
Sbjct: 56 -------NIRPAGARAPYFPITYIEPLAGNEAALGLDLASEPVRREALERARDTGEPVLT 108
Query: 453 PPFKLLK--SNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQL 510
P L++ + G +L VY P T E+R EA G++ A + + L+E LL
Sbjct: 109 GPVTLVQGGGDQRGFLLYLPVYRGGGPT--TVEERREALWGFVSAVFRLDDLLESLLLSR 166
Query: 511 ASKQTIVVNVYDTTNASAPINMYG 534
A + + +YD ++ + +YG
Sbjct: 167 AE-DGLALRIYDGSDGADGELLYG 189
|
This domain is found in the extracellular portion of receptor-like proteins - such as serine/threonine kinases and adenylyl cyclases. Predicted to be a ligand binding domain. Length = 190 |
| >gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 1e-33
Identities = 63/192 (32%), Positives = 111/192 (57%), Gaps = 7/192 (3%)
Query: 588 GHIFHAAINRIAQVENDYHEMMELKARAE-AADVAKSQFLATVSHEIRTPMNGVLGMLQM 646
G + +++ + H + EL R E AK +FLA +SHE+RTP+ + G+L++
Sbjct: 80 GLTRLVLASLGSELASLAHALNELLERLERLLRRAKREFLANISHELRTPLTAIRGLLEL 139
Query: 647 LMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESG-RLEPEFVPFHLHDVLDNVL 705
L++ LD Q + + + L+ L+ND+LD +++E+G +L+ L ++L+ V+
Sbjct: 140 LLEGLLD-PQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAELLEEVV 198
Query: 706 SLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL 765
L + A +KGIELA+ + + V+GDP R RQ++ NL+ N+IK+T G I +SV
Sbjct: 199 RLLAPLAQEKGIELAVDLPE--LPYVLGDPERLRQVLVNLLSNAIKYT-PGGEITISVRQ 255
Query: 766 ADDVRSKVDVKD 777
D+ + + V+D
Sbjct: 256 DDE-QVTISVED 266
|
Length = 336 |
| >gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 3e-33
Identities = 76/190 (40%), Positives = 114/190 (60%), Gaps = 15/190 (7%)
Query: 599 AQVENDYHEMMEL-----KARAEA--ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE 651
AQV+ E+ EL +ARAEA A AKS FLA +SHEIRTP+ G+LG Q+L D
Sbjct: 414 AQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP 473
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESG----RLEPEFVPFHLHDVLDNVLSL 707
AQ D + +SG+ L++++ND+LD + IE+G + E PF +L++ L L
Sbjct: 474 ALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDE--PFEPRPLLESTLQL 531
Query: 708 FSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767
S + + I LA ++D +P ++GDP R RQ+ITNL+ N+++FT D+G I + D
Sbjct: 532 MSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFT-DEGSIVLRSR-TD 589
Query: 768 DVRSKVDVKD 777
+ V+V+D
Sbjct: 590 GEQWLVEVED 599
|
Length = 914 |
| >gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 1e-28
Identities = 62/169 (36%), Positives = 100/169 (59%), Gaps = 6/169 (3%)
Query: 610 ELKARAEAADVA---KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNS 666
E K +A + A K+ F++T+SHE+RTP+NG++G+ ++L+DTEL A Q Y +T H S
Sbjct: 268 ERKRYQDALEKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVS 327
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L ++ ND++D K+E +L+ + P D L ++ +L +A QKG+ +
Sbjct: 328 AITLGNIFNDIIDMDKMERRKLQLDNQPIDFTDFLADLENLSGLQAEQKGLRFDLEPLLP 387
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV--HLADDVRSKV 773
+P VI D R RQI+ NL+ N++KFTQ +G + V V D + +V
Sbjct: 388 LPHKVITDGTRLRQILWNLISNAVKFTQ-QGGVTVRVRYEEGDMLTFEV 435
|
Length = 779 |
| >gnl|CDD|215015 smart01079, CHASE, This domain is found in the extracellular portion of receptor-like proteins - such as serine/threonine kinases and adenylyl cyclases | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-26
Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 22/191 (11%)
Query: 338 SAVDQKTFGEYTERTAFER--PLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLV 395
+V + F + R P G+ +A +V +ER FE ++ +
Sbjct: 2 ESVSRAEFRRFALELQLNRRLPGIQGLGWAPRVPPAERAAFEAA----LRAGGPGLFNIR 57
Query: 396 QDCTPENLDPAPVQDEYAPVIFSQETVSH--IVSIDMMSGKEDRENILRARASGKGVLTP 453
L P +DEY + + + + + +D++S R + RAR SG+ VL+
Sbjct: 58 -------LAPDGERDEYFVITYIEPLAGNEAALGLDLLSEPVRRAALERARDSGRPVLSG 110
Query: 454 PFKLLKSNH--LGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLA 511
P L++ G +L VY R EA G++ A + + L+E LL L
Sbjct: 111 PVTLVQGTGDGRGFLLRLPVY----RGGPPTSTRREALWGFVSAVFRLDDLLEGLLGALD 166
Query: 512 SKQTIVVNVYD 522
+ + +YD
Sbjct: 167 LPG-LDLALYD 176
|
Predicted to be a ligand binding domain. Length = 176 |
| >gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 9e-26
Identities = 64/170 (37%), Positives = 100/170 (58%), Gaps = 6/170 (3%)
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL--DAAQLDYAQTAHNSG 667
E+ AE A +KS FLATVSHE+RTP+ G++G L +L EL +L +NS
Sbjct: 435 EMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRL--VTAMNNSS 492
Query: 668 KDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRV 727
L+ +I+D+LD +KIES +L+ E F +V++++ + + +K + L ++ V
Sbjct: 493 SLLLKIISDILDFSKIESEQLKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDV 552
Query: 728 PEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
P + GDP R +Q+I+NL+ N+IKFT D G I + V + D S V+D
Sbjct: 553 PVALNGDPMRLQQVISNLLSNAIKFT-DTGCIVLHVRVDGDYLS-FRVRD 600
|
Length = 924 |
| >gnl|CDD|238088 cd00156, REC, Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 1e-24
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 23/136 (16%)
Query: 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQA 1144
L+VDD+ + R + L+K G V + G A+ L D +D+ MP MDG +
Sbjct: 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLA-EEKPDLILLDIMMPGMDGLEL 59
Query: 1145 TWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVS 1204
+IR + +PI+ +TA + +K G DDY++
Sbjct: 60 LRRIR--------KRGP--------------DIPIIFLTAHGDDEDAVEALKAGADDYLT 97
Query: 1205 KPFEDEQLYTAVARFF 1220
KPF E+L +
Sbjct: 98 KPFSPEELLARIRALL 113
|
Length = 113 |
| >gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 2e-22
Identities = 40/73 (54%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
+ +TVED G GIP E +IF PF + D SR GGTG+GLSI + LVEL GGEI
Sbjct: 37 HVEITVEDNGPGIPPEDLEKIFEPFFRTDK-RSRKIGGTGLGLSIVKKLVELHGGEISVE 95
Query: 889 SEPGTGSTFSFTV 901
SEPG G+TF+ T+
Sbjct: 96 SEPGGGTTFTITL 108
|
Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. Length = 111 |
| >gnl|CDD|223855 COG0784, CheY, FOG: CheY-like receiver [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 3e-22
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 24/144 (16%)
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCG-RAAVDKLTPPHNFDACFMDLQM 1136
LL G ++LVVDD VNRR+ + L+ G V G A++ L D +D+ M
Sbjct: 2 LLSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDINM 61
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P MDG + ++R I P++ +TA +A E+ +
Sbjct: 62 PGMDGIELLRRLRARGPNI----------------------PVILLTAYADEADRERALA 99
Query: 1197 CGMDDYVSKP-FEDEQLYTAVARF 1219
G DDY++KP F +E+L A+ R
Sbjct: 100 AGADDYLTKPIFLEEELLAALRRL 123
|
Length = 130 |
| >gnl|CDD|200976 pfam00072, Response_reg, Response regulator receiver domain | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 3e-22
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 23/133 (17%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+L+VDD+ + R + L+K G +V D G A++ L D +D++MP MDG +
Sbjct: 1 VLIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALELL-KEKRPDLILLDIRMPGMDGLE 59
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
+IR P++ +TA + + +K G +D++
Sbjct: 60 LLRRIRRRPP----------------------TTPVIVLTAHGDEEDAVEALKAGANDFL 97
Query: 1204 SKPFEDEQLYTAV 1216
SKPF+ E+L A+
Sbjct: 98 SKPFDPEELVAAL 110
|
This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain. Length = 111 |
| >gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 2e-21
Identities = 40/73 (54%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
L + VED G GIP E RIF F +D S SR GGTG+GLSI + LVEL GG I
Sbjct: 33 HLEIRVEDNGPGIPEEDLERIFERF--SDGSRSRKGGGTGLGLSIVKKLVELHGGRIEVE 90
Query: 889 SEPGTGSTFSFTV 901
SEPG G+TF+ T+
Sbjct: 91 SEPGGGTTFTITL 103
|
Length = 103 |
| >gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-20
Identities = 44/72 (61%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889
L +TVED G+GIP E +IF PF + DSS SR GGTG+GLSI R LVEL GG I S
Sbjct: 38 LRITVEDNGIGIPPEDLPKIFEPFFRTDSS-SRKVGGTGLGLSIVRKLVELHGGTITVES 96
Query: 890 EPGTGSTFSFTV 901
EPG G+TF+FT+
Sbjct: 97 EPGGGTTFTFTL 108
|
This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 111 |
| >gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
Score = 97.1 bits (241), Expect = 3e-20
Identities = 84/309 (27%), Positives = 146/309 (47%), Gaps = 67/309 (21%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ- 656
I + + H + + +A A VAKSQFLAT+SHEIRTP++ ++G L++L + L Q
Sbjct: 688 ITETRDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQR 747
Query: 657 LDYAQTAHNSGKDLISLINDVLDQAKIESG--RLEPEFVPFHLHDVLDNVLSLFSSKANQ 714
++ A+ +G+ L+ LI ++LD KIESG +L+P++V + ++ N F + A
Sbjct: 748 VEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWV--DIPTLVQNTCHSFGAIAAS 805
Query: 715 KGIELAIYVSDRVPE--VVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSK 772
K I L+ S P+ +V DP F+Q+++NL+ N++KFT + G + ++ L +
Sbjct: 806 KSIALS--CSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTE-GAVKITTSLGHIDDNH 862
Query: 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLV 832
+K +++ Q + ++ FK T+ GR
Sbjct: 863 AVIKMTIMDSGSGLSQEEQQQL------------------FKRYSQTSA----GR----- 895
Query: 833 TVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
+ TG G+ GL I + L++ M G++ S PG
Sbjct: 896 --QQTGSGL----------------------------GLMICKELIKNMQGDLSLESHPG 925
Query: 893 TGSTFSFTV 901
G+TF+ T+
Sbjct: 926 IGTTFTITI 934
|
Length = 1197 |
| >gnl|CDD|215963 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 9e-20
Identities = 33/66 (50%), Positives = 49/66 (74%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AKS+FLA +SHE+RTP+ + G L++L+DTEL Q +Y +T S + L+ LIND+LD
Sbjct: 1 AKSEFLANLSHELRTPLTAIRGYLELLLDTELSEEQREYLETILRSAERLLRLINDLLDL 60
Query: 681 AKIESG 686
++IE+G
Sbjct: 61 SRIEAG 66
|
Dimerisation and phospho-acceptor domain of histidine kinases. Length = 66 |
| >gnl|CDD|214644 smart00388, HisKA, His Kinase A (phosphoacceptor) domain | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 1e-19
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
AK +FLA +SHE+RTP+ + G L++L+DTEL Q +Y +T + L+ LIND+LD
Sbjct: 1 AKREFLANLSHELRTPLTAIRGYLELLLDTELSEEQREYLETILREAERLLRLINDLLDL 60
Query: 681 AKIESG 686
++IE+G
Sbjct: 61 SRIEAG 66
|
Dimerisation and phosphoacceptor domain of histidine kinases. Length = 66 |
| >gnl|CDD|236462 PRK09303, PRK09303, adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 3e-19
Identities = 76/290 (26%), Positives = 115/290 (39%), Gaps = 73/290 (25%)
Query: 621 AKSQFLATVSHEIRTPMNGV------LGMLQMLMDTELDAAQLD-YAQTAHNSGKDLISL 673
K + LA ++H++RTP+ L + Q+ DTEL A ++ A +++ L
Sbjct: 150 FKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERL 209
Query: 674 INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIG 733
I D+L+ + L L + V+ + K +E+ + +P V
Sbjct: 210 ITDLLEVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLPSV-YA 268
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK 793
D R RQ++ NL+ N+IK+T + G I +S
Sbjct: 269 DQERIRQVLLNLLDNAIKYTPEGGTITLS------------------------------- 297
Query: 794 VYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF--T 851
ML T K+ V++ DTG GIP E Q RIF
Sbjct: 298 ---------------------MLHRTTQ-------KVQVSICDTGPGIPEEEQERIFEDR 329
Query: 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901
+ D T G GIGLS+ R +V + G+I SEPG GS F FT+
Sbjct: 330 VRLPRDEGTE----GYGIGLSVCRRIVRVHYGQIWVDSEPGQGSCFHFTL 375
|
Length = 380 |
| >gnl|CDD|233391 TIGR01386, cztS_silS_copS, heavy metal sensor kinase | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 3e-19
Identities = 81/362 (22%), Positives = 136/362 (37%), Gaps = 102/362 (28%)
Query: 572 TAINASIGVVVITLLVGHI-----------FHAAINRIA------------------QVE 602
I ++ +V++T L+G A RI+ ++
Sbjct: 165 WLILIAVLLVLLTALLGWWITRLGLEPLRRLSAVAARISPESLDQRLDPSRAPAELRELA 224
Query: 603 NDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQT 662
++ M+ R E A SQF A ++HE+RTP+ +LG Q+ + +Y +
Sbjct: 225 QSFNAMLG---RLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGE--EYREV 279
Query: 663 AHNSGKDLISL---INDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIEL 719
++ ++L L ++D+L A+ ++G+L E V L L V F A ++G+ +
Sbjct: 280 LESNLEELERLSRMVSDMLFLARADNGQLALERVRLDLAAELAKVAEYFEPLAEERGVRI 339
Query: 720 AIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779
+ V GDP FR+ I+NL+ N+++ T D G I +V + +V V
Sbjct: 340 RVEGEGLVR----GDPQMFRRAISNLLSNALRHTPDGGTI--TVRIERR-SDEVRV---- 388
Query: 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGV 839
V N G P E L R+
Sbjct: 389 -------------SVSNPGPGIPP-------------------EHLSRL----------- 405
Query: 840 GIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899
F F + D + S + GTG+GL+I R ++E GG S G + F
Sbjct: 406 ----------FDRFYRVDPARSNSGEGTGLGLAIVRSIMEAHGGRASAESPDGK-TRFIL 454
Query: 900 TV 901
Sbjct: 455 RF 456
|
Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Length = 457 |
| >gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 7e-19
Identities = 69/268 (25%), Positives = 108/268 (40%), Gaps = 44/268 (16%)
Query: 827 RIKLLVTVEDTGVGIPLEAQVRIFTPFMQA-DSSTSRTYGGTGIGLSISRCLVELMGGEI 885
L VED+G+GIP + +IF + Q DS + GTGIGL++S+ L + MGG+I
Sbjct: 428 GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDI 487
Query: 886 GFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRY 945
SE G GS F+ T+ D D L L+++D + V R
Sbjct: 488 TVTSEEGKGSCFTLTIHAPAVAEEVEDAF----DEDDMPLPALNILLVEDIELNVIVARS 543
Query: 946 HLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005
L++L +V VA + + A + LVL+D + D M
Sbjct: 544 VLEKLGNSVDVAMTGKEALEMFDPD-------EYDLVLLDIQLPD---------M----- 582
Query: 1006 RKGGLEISRNL----------PKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGC 1055
GL+I+R L P + L A + D+ E G+ +L+KPL + L
Sbjct: 583 --TGLDIARELRERYPREDLPPLVALTANVLK--DKKEYLDAGMDDVLSKPLSVPALTAM 638
Query: 1056 ----FQEDPESSKKLQQKRKKPSLGHLL 1079
+ + + + + LL
Sbjct: 639 IKKFWDTQDDEESTVTTEESSKANEALL 666
|
Length = 779 |
| >gnl|CDD|234074 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 9e-19
Identities = 47/194 (24%), Positives = 80/194 (41%), Gaps = 12/194 (6%)
Query: 586 LVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ 645
L I + V D + L + + F+A VSHE+RTP+ + G L+
Sbjct: 85 LEIRIAPYGEEQKLLVARDVTRLRRL-------EQMRRDFVANVSHELRTPLTVLRGYLE 137
Query: 646 MLMDT--ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDN 703
L D E + + + SL+ D+L +++ES E P + +LD+
Sbjct: 138 TLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMPALLDH 197
Query: 704 VLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV 763
+ + + K ++ + V V+GD R +NLV N+IK+T + G I V
Sbjct: 198 LRDEAEALSQGKNHQITFEIDGGVD--VLGDEDELRSAFSNLVSNAIKYTPEGGTITVRW 255
Query: 764 HLADDVRSKVDVKD 777
++ V D
Sbjct: 256 RRDGG-GAEFSVTD 268
|
Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154) [Signal transduction, Two-component systems]. Length = 333 |
| >gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 86.0 bits (212), Expect = 9e-18
Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
++ ++VEDTG GIP E RIF PF + D S S GTG+GL+I + +VEL GG I
Sbjct: 259 QVTISVEDTGPGIPEEELERIFEPFFRTDKSRS----GTGLGLAIVKRIVELHGGTISVE 314
Query: 889 SEPGTGSTFSFTV 901
SEPG G+TF+ +
Sbjct: 315 SEPGKGTTFTIRL 327
|
Length = 336 |
| >gnl|CDD|226702 COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 1e-16
Identities = 66/309 (21%), Positives = 108/309 (34%), Gaps = 70/309 (22%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLM---DTELDAAQLDYAQTA 663
E+ +L+ E ++ F SH+++ P+ + Q+L LD ++
Sbjct: 509 ELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFI 568
Query: 664 HNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYV 723
+ LI+D+L +K+ G E P + V+D VL S + G E+ I
Sbjct: 569 SRLTSLMQQLIDDLLTYSKL--GLTEAPLQPTDVQKVVDKVLLELSQRIADTGAEIRI-- 624
Query: 724 SDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKS 783
+P V ++ + Q V +L
Sbjct: 625 -APLPVV---------------AADATQLGQ------VFQNLIA---------------- 646
Query: 784 LNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPL 843
N+++ + P ++ + + +V D G+GI
Sbjct: 647 -NAIKFGGPEN-------PDIEISAERQE---------------DEWTFSVRDNGIGIDP 683
Query: 844 EAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903
RIF F Q S Y GTG+GL+I + + E G I S PG GSTF FT+
Sbjct: 684 AYFERIFVIF-QRLHSRDE-YLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPV 741
Query: 904 TEGERNSLD 912
E S
Sbjct: 742 GGEEPGSSS 750
|
Length = 750 |
| >gnl|CDD|227335 COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 1e-16
Identities = 70/298 (23%), Positives = 125/298 (41%), Gaps = 70/298 (23%)
Query: 616 EAADVAKSQFLATVSHEIRTP---MNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLIS 672
E + + +F+A VSHE+RTP M L L+ + + A + + N + +I
Sbjct: 219 EKVERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAP-RFLRVTLNETERMIR 277
Query: 673 LINDVLDQAKIESGR--LEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEV 730
L+ND+L +++++ R L E++ F L+ +++ F ++ I + +
Sbjct: 278 LVNDLLQLSRMDNARYQLNKEWINFTAF--LNEIINRFEMILKKETIARFVRDIPKQDIW 335
Query: 731 VIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV-HLADDVRSKVDVKDKVLEKSLNSVQH 789
V DP + Q++ N++ N++K++ D G I VSV V + + D+ L
Sbjct: 336 VEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRETWVE--ISISDQGL--------- 384
Query: 790 KSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849
G P D K ++ F +D +
Sbjct: 385 ----------GIPKEDLEKIFDRFYRVDKARS---------------------------- 406
Query: 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907
R GGTG+GL+I++ +V+ GG I SE G G+TFSFT+ ++
Sbjct: 407 ------------RKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSGEA 452
|
Length = 459 |
| >gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 1e-15
Identities = 33/69 (47%), Positives = 43/69 (62%)
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889
L V DTGVGIP + VR+F PF Q + R + GTG+GL+I L+ +M G+I S
Sbjct: 594 LSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDS 653
Query: 890 EPGTGSTFS 898
EPG GS F+
Sbjct: 654 EPGMGSQFT 662
|
Length = 924 |
| >gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-15
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL-DAAQLDYAQTAHNSGKDLISLINDVLD 679
AK +FLA VSHE+RTP+ + G L++L + L D Q +Y + + L+ LIND+LD
Sbjct: 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLD 62
Query: 680 QAK 682
++
Sbjct: 63 LSR 65
|
They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes. Length = 65 |
| >gnl|CDD|225114 COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-13
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 27/139 (19%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ILVVDD+ R + E AL+ G V + A++ L+ FD +D++MP MDG
Sbjct: 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALS-ESPFDLVLLDIRMPGMDG 63
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA--DVIQASNEQCMKCGM 1199
+ L EI + +P++ MT D+ A + ++ G
Sbjct: 64 LE-------LLKEIKSRDP---------------DLPVIVMTGHGDIDTAV--EALRLGA 99
Query: 1200 DDYVSKPFEDEQLYTAVAR 1218
D++ KPF+ ++L V R
Sbjct: 100 FDFLEKPFDLDRLLAIVER 118
|
Length = 464 |
| >gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-13
Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 12/172 (6%)
Query: 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKD 669
L A E +S LA++SH++RTP+ ++G + L+ + D A+ + ++
Sbjct: 651 RLAAERERL---RSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREE 707
Query: 670 ---LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L L+ ++LD +++SG + + + +V+ L + I VS
Sbjct: 708 SERLTRLVTNLLDMTRLQSGGVNLKLDWVLVEEVVGEALQRLRKRF----TGHKIVVSVP 763
Query: 727 VPEVVI-GDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
V +I D Q++ NL+ N++K+ I ++ + + V D
Sbjct: 764 VDLPLIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVERE-NVVFSVID 814
|
Length = 890 |
| >gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 9e-13
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
QIL+VDD NR + L + G VT G A+ +L H FD MD++MP +DG
Sbjct: 692 QILLVDDVETNRDIIGMMLVELGQQVTTAASGTEAL-ELGRQHRFDLVLMDIRMPGLDGL 750
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
+ T R N ++ I+A+TA+ +C K GM+ Y
Sbjct: 751 ETTQLWRDDPNNLDP------------------DCMIVALTANAAPEEIHRCKKAGMNHY 792
Query: 1203 VSKPFEDEQL 1212
++KP QL
Sbjct: 793 LTKPVTLAQL 802
|
Length = 921 |
| >gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-12
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 20/145 (13%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L +++L+V+DN VN+ VA+G L + G VT + G++A++ H FD +D+ +P+
Sbjct: 700 LPPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFH-QHAFDLALLDINLPD 758
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
DG Q+R + NE V +A +A V Q + G
Sbjct: 759 GDGVTLLQQLRAIYGAKNE-------------------VKFIAFSAHVFNEDVAQYLAAG 799
Query: 1199 MDDYVSKPFEDEQLYTAVARFFMSG 1223
D +++KP +EQL +A G
Sbjct: 800 FDGFLAKPVVEEQLTAMIAVILAGG 824
|
This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072) [Signal transduction, Two-component systems]. Length = 968 |
| >gnl|CDD|234074 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 2e-12
Identities = 29/69 (42%), Positives = 39/69 (56%)
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
+V DTG+GI E R+ F + D S SR GGTG+GL+I + ++ + SE
Sbjct: 264 FSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESEL 323
Query: 892 GTGSTFSFT 900
G GSTFSF
Sbjct: 324 GKGSTFSFI 332
|
Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154) [Signal transduction, Two-component systems]. Length = 333 |
| >gnl|CDD|237526 PRK13837, PRK13837, two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-11
Identities = 74/315 (23%), Positives = 114/315 (36%), Gaps = 73/315 (23%)
Query: 590 IFHAAINRIAQVENDYHEMMELKARAEAAD--VAKSQFLATVSHEIRTPMNGVLGMLQML 647
+ HA ++E E L+ R E A A + ++H + +LG +M
Sbjct: 421 LAHAI--ERRRLET---ERDALERRLEHARRLEAVGTLASGIAHNFNNILGAILGYAEMA 475
Query: 648 MDTELD----AAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDN 703
++ A +D +A + +I DQ + E PF L +++
Sbjct: 476 LNKLARHSRAARYIDEIISAGARARLII-------DQILAFGRKGERNTKPFDLSELVTE 528
Query: 704 VLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV 763
+ L + G+EL D+ P VV G+P +Q++ NL N+ + G + +S+
Sbjct: 529 IAPLLRV-SLPPGVELDFD-QDQEPAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISL 586
Query: 764 HLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTME 823
A KV L +
Sbjct: 587 SRAKLRAPKV------------------------------------------LSHGVLPP 604
Query: 824 QLGRIKLLVTVEDTGVGIPLEAQV-RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMG 882
GR LL V DTG GI EA + IF PF T+R GGTG+GL+ +V
Sbjct: 605 --GRYVLL-RVSDTGAGID-EAVLPHIFEPFF-----TTRA-GGTGLGLATVHGIVSAHA 654
Query: 883 GEIGFVSEPGTGSTF 897
G I S G G+ F
Sbjct: 655 GYIDVQSTVGRGTRF 669
|
Length = 828 |
| >gnl|CDD|182895 PRK11006, phoR, phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-11
Identities = 70/287 (24%), Positives = 110/287 (38%), Gaps = 76/287 (26%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA-QTAHNSGKDLISLINDVLD 679
A+ F A VSHE+RTP+ + G L+M+ D L+ A + A T + + L+ +L
Sbjct: 203 ARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLT 262
Query: 680 QAKIESGRLEPEFVPFH-LHDVLD--NVLSLFSSKAN---QKGIELAIYVSDRVPEVVIG 733
+KIE+ P L++ +D +L + +A Q + V + + V G
Sbjct: 263 LSKIEAA-------PTIDLNEKVDVPMMLRVLEREAQTLSQGKHTITFEVDNSLK--VFG 313
Query: 734 DPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDK 793
+ + R I+NLV N+V H
Sbjct: 314 NEDQLRSAISNLV-------------------------------------YNAVNH---- 332
Query: 794 VYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853
T G + RW+ E +VED G GI E R+ F
Sbjct: 333 ---TPEGTHITVRWQR--------VPQGAE--------FSVEDNGPGIAPEHIPRLTERF 373
Query: 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
+ D + SR GG+G+GL+I + + + SE G G+ FSF
Sbjct: 374 YRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIESEVGKGTRFSFV 420
|
Length = 430 |
| >gnl|CDD|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 8e-11
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 16/88 (18%)
Query: 822 MEQLGRI----------KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGL 871
+ G+I ++ V++ED G GI E +IF PF +T GTG+GL
Sbjct: 516 ISARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPFF----TTKAK--GTGLGL 569
Query: 872 SISRCLVELMGGEIGFVSEPGTGSTFSF 899
++S+ ++ GG+I SEPG G+TF+
Sbjct: 570 ALSQRIINAHGGDIEVESEPGVGTTFTL 597
|
Length = 607 |
| >gnl|CDD|214668 smart00448, REC, cheY-homologous receiver domain | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-10
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
ILVVDD+ + R + + L+K G V G A++ L D +D+ MP
Sbjct: 3 ILVVDDDPLLRELLKALLEKEGYEVDEATDGEEALELL-KEEKPDLILLDIMMP 55
|
CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues. Length = 55 |
| >gnl|CDD|223816 COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 33/140 (23%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+IL+V+D+ + + L++ G V G A++ D +DL +P++DG
Sbjct: 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAR--EQPDLVLLDLMLPDLDG 58
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
+ ++R + PI+ +TA D + ++
Sbjct: 59 LELCRRLRAKKGSG---------------------PPIIVLTARDDEEDRVLG-----LE 92
Query: 1197 CGMDDYVSKPFEDEQLYTAV 1216
G DDY++KPF +L +
Sbjct: 93 AGADDYLTKPFSPRELLARL 112
|
Length = 229 |
| >gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-10
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
++ +V D G GIP RIF F + + ++ G G+GL+I R +VE GG I
Sbjct: 807 NVVFSVIDEGPGIPEGELERIFDKFYRGNKESATR--GVGLGLAICRGIVEAHGGTISAE 864
Query: 889 SEPGTGSTFSFTVTFTEGERNSLD 912
+ PG G+ F FT+ E
Sbjct: 865 NNPGGGAIFVFTLPVEEDPPLEDF 888
|
Length = 890 |
| >gnl|CDD|225107 COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 4e-10
Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 25/136 (18%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHG--AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
++L+VDD+ + R L+ +V G A+D D +DL MP MD
Sbjct: 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLA-RELKPDVVLLDLSMPGMD 60
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G +A Q+R + ++ +TA A + ++ G D
Sbjct: 61 GLEALKQLRAR----------------------GPDIKVVVLTAHDDPAYVIRALRAGAD 98
Query: 1201 DYVSKPFEDEQLYTAV 1216
Y+ K E+L A+
Sbjct: 99 GYLLKDASPEELVEAI 114
|
Length = 211 |
| >gnl|CDD|183099 PRK11361, PRK11361, acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 6e-10
Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 27/137 (19%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVD--KLTPPHNFDACFMDLQMPEMDG 1141
IL+VDD RR+ A G C + GR A+ P D MD++MPEMDG
Sbjct: 7 ILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHP---DVVLMDIRMPEMDG 63
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+A ++R E P++ MTA + + ++CG D
Sbjct: 64 IKALKEMRSHETR----------------------TPVILMTAYAEVETAVEALRCGAFD 101
Query: 1202 YVSKPFEDEQLYTAVAR 1218
YV KPF+ ++L V R
Sbjct: 102 YVIKPFDLDELNLIVQR 118
|
Length = 457 |
| >gnl|CDD|182101 PRK09835, PRK09835, sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 8e-10
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 24/167 (14%)
Query: 613 ARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLI- 671
R E +S F A ++HEIRTP+ ++ TE+ +Q + +D++
Sbjct: 253 ERIEDVFTRQSNFSADIAHEIRTPIT------NLITQTEIALSQ----SRSQKELEDVLY 302
Query: 672 ----------SLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAI 721
+++D+L A+ ++ +L PE L D + V F + A ++G+EL
Sbjct: 303 SNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRF 362
Query: 722 YVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADD 768
P V GDP R+ I+NL+ N++++T I V D
Sbjct: 363 ---VGDPCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQEVDH 406
|
Length = 482 |
| >gnl|CDD|236724 PRK10604, PRK10604, sensor protein RstB; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 9e-10
Identities = 28/69 (40%), Positives = 38/69 (55%)
Query: 831 LVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890
+ VED G GIP E + R+F PF++ D S R GG G+GL+I + MGG +
Sbjct: 351 CLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDES 410
Query: 891 PGTGSTFSF 899
G+ FSF
Sbjct: 411 ELGGARFSF 419
|
Length = 433 |
| >gnl|CDD|236674 PRK10364, PRK10364, sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-09
Identities = 68/281 (24%), Positives = 110/281 (39%), Gaps = 76/281 (27%)
Query: 620 VAKSQFLATVSHEIRTPMNGVLGMLQMLMD---TELDAAQLDYAQTAHNSGKDLISLIND 676
VA A V+HEIR P++ + G+ + + +A QL AQ L ++++
Sbjct: 235 VALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQL--AQVMAKEADRLNRVVSE 292
Query: 677 VLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPG 736
+L+ K L+ L+D++++ L L S AN + I+L +D +PE+ DP
Sbjct: 293 LLELVKPTHLALQA----VDLNDLINHSLQLVSQDANSREIQLRFTANDTLPEIQA-DPD 347
Query: 737 RFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYN 796
R Q++ NL N+I+ G I V+ + K+ V D
Sbjct: 348 RLTQVLLNLYLNAIQAIGQHGVISVTASESGA-GVKISVTD------------------- 387
Query: 797 TLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQA 856
SG + +QL I FTP+
Sbjct: 388 --SGKGIAA-----------------DQLEAI---------------------FTPYFTT 407
Query: 857 DSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTF 897
+ GTG+GL++ +VE GG I S+ G G+TF
Sbjct: 408 KAE------GTGLGLAVVHNIVEQHGGTIQVASQEGKGATF 442
|
Length = 457 |
| >gnl|CDD|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-08
Identities = 37/172 (21%), Positives = 79/172 (45%), Gaps = 8/172 (4%)
Query: 607 EMMELKARAEA-ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHN 665
+ AR E A + + +A V+HEIR P+ + G +Q+ D +Y
Sbjct: 376 RLQRRVARQERLAALGE--LVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLR 433
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
L +I+ +L+ ++ E ++ P L+ +++ VL LF + Q ++ + +
Sbjct: 434 EVDRLNKVIDQLLEFSRPR----ESQWQPVSLNALVEEVLQLFQTAGVQARVDFETELDN 489
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
+P + DP +Q++ N++ N+++ +G I + D + V ++D
Sbjct: 490 ELPPIWA-DPELLKQVLLNILINAVQAISARGKIRIRTWQYSDGQVAVSIED 540
|
Length = 607 |
| >gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-08
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 21/142 (14%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L IL+V+D +N VA L+K G V G+ A++ P +D +D+Q+P+
Sbjct: 523 LPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP-DEYDLVLLDIQLPD 581
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
M G ++R E E + P++A+TA+V++ E + G
Sbjct: 582 MTGLDIARELR--ERYPREDLP-----------------PLVALTANVLKDKKEY-LDAG 621
Query: 1199 MDDYVSKPFEDEQLYTAVARFF 1220
MDD +SKP L + +F+
Sbjct: 622 MDDVLSKPLSVPALTAMIKKFW 643
|
Length = 779 |
| >gnl|CDD|236701 PRK10490, PRK10490, sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 8e-08
Identities = 45/182 (24%), Positives = 95/182 (52%), Gaps = 18/182 (9%)
Query: 607 EMMELKARAEAADVA------KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA 660
E + L A E A +A ++ LA +SH++RTP+ + G ++L +L + +A
Sbjct: 643 ERLTLTASEEQARLASEREQLRNALLAALSHDLRTPLTVLFGQAEILT-LDLASEGSPHA 701
Query: 661 QTAHNSGKDLIS---LINDVLDQAKIESG--RLEPEFVPFHLHDVLDNVLSLFSSKANQK 715
+ A + +++ L+N++LD A+I+SG L E++ L +V+ + L + +
Sbjct: 702 RQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEWLT--LEEVVGSALQMLEPGLSGH 759
Query: 716 GIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDV 775
I L++ + + ++ D F +++ NL+ N++K+ + I + H+ + R ++DV
Sbjct: 760 PINLSL--PEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGE-RLQLDV 815
Query: 776 KD 777
D
Sbjct: 816 WD 817
|
Length = 895 |
| >gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 23/123 (18%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
ILVVDD+ +NRR+ L G + G A++ L+ H D D+ MP MDG++
Sbjct: 804 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH-IDIVLTDVNMPNMDGYR 862
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
T ++R L GL +P++ +TA+ + ++C++ GMD +
Sbjct: 863 LTQRLRQL---------------------GL-TLPVIGVTANALAEEKQRCLEAGMDSCL 900
Query: 1204 SKP 1206
SKP
Sbjct: 901 SKP 903
|
Length = 924 |
| >gnl|CDD|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 625 FLATVSHEIRTPMNGVLGMLQMLMD--TELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
F+A +SHE+RTP+ + G L+ + D + + Q + L L++D+ +
Sbjct: 243 FMADISHELRTPLAVLRGELEAIQDGVRKFTPESVASLQAEVGT---LTKLVDDLHQLSL 299
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
+ G L P L +L+ F + +G+ L + + D V GDP R Q+
Sbjct: 300 SDEGALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSAT--VFGDPDRLMQLF 357
Query: 743 TNLVGNSIKFTQDKGHIFVSVHLADD 768
NL+ NS+++T G + +S D
Sbjct: 358 NNLLENSLRYTDSGGSLHISAEQRDK 383
|
Length = 466 |
| >gnl|CDD|226370 COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 4e-07
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 827 RIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIG 886
R+ L + V D G G+P + Q +F P + + R GGTG+GL++++ L++ GG+I
Sbjct: 285 RLALPLEVIDNGPGVPPDLQDHLFYPMV-----SGRE-GGTGLGLALAQNLIDQHGGKIE 338
Query: 887 FVSEPGTGSTFS 898
F S PG + F
Sbjct: 339 FDSWPG-RTVFR 349
|
Length = 363 |
| >gnl|CDD|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 4e-07
Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 34/222 (15%)
Query: 574 INASIGVVVITLLVGHIF----HAAINRIAQV-----ENDYHEMMELKARAEAADVAKS- 623
+ A ++ I LL+G + +I R+ + E + +L + E ++A++
Sbjct: 185 LWAGALLLGIALLIGAGVVWWLNRSIRRLTRYADAVTEGKPVPLPKLGSS-ELRELAQAL 243
Query: 624 --------------QFLATVSHEIRTPMNGVLG---MLQMLMDTELDAAQLDYAQTAHNS 666
Q++ T++HE+++P+ + G +LQ E D A+
Sbjct: 244 ESMRVKLEGKAYVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPE-DRARF--TGNILTQ 300
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
L LI+ +L+ A++E + P L +L+ ++ ++A KGI L + D
Sbjct: 301 SARLQQLIDRLLELARLEQRQELEVLEPVALAALLEELVEAREAQAAAKGITLRLRPDDA 360
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADD 768
V+GDP RQ + NL+ N+I F+ + G I +S + +
Sbjct: 361 R---VLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVDGE 399
|
Length = 475 |
| >gnl|CDD|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-06
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 1/143 (0%)
Query: 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQ 680
A+ FL + E++ P+ + + L T + Q L+ L++++
Sbjct: 449 ARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLL 508
Query: 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQ 740
+E+ +PE F L D++D VL +KG++L I+ + ++ IGD R+
Sbjct: 509 NMLETQDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRK 568
Query: 741 IITNLVGNSIKFTQDKGHIFVSV 763
I+ L+ +I T G I + V
Sbjct: 569 ILLLLLNYAIT-TTAYGKITLEV 590
|
Length = 894 |
| >gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYG-GTGIGLSISRCLVELMGGEIGFV 888
+++TV D G GI EA +F PF T++ G G G+GL+IS+ + +GG +
Sbjct: 532 VVLTVRDNGPGIAPEALPHLFEPFF-----TTKPVGKGLGLGLAISQNIARDLGGSLEVA 586
Query: 889 SEPGTGSTFS 898
+ P G++F+
Sbjct: 587 NHPEGGASFT 596
|
Length = 603 |
| >gnl|CDD|182947 PRK11073, glnL, nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 834 VEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892
+ED G GIP Q +F P + GGTG+GLSI+R L++ G+I F S PG
Sbjct: 285 IEDNGPGIPPHLQDTLFYPMVSGRE------GGTGLGLSIARNLIDQHSGKIEFTSWPG 337
|
Length = 348 |
| >gnl|CDD|236839 PRK11086, PRK11086, sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889
L V D G GI + IF + S+ G+GL + + VE +GG I S
Sbjct: 468 LHCEVSDDGPGIAPDEIDAIFD---KGYSTKGS---NRGVGLYLVKQSVENLGGSIAVES 521
Query: 890 EPGTGSTFSFTVTFTEGERNSL 911
EPG G+ F + + +GER++
Sbjct: 522 EPGVGTQFFVQIPW-DGERSNR 542
|
Length = 542 |
| >gnl|CDD|226229 COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-06
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 35/138 (25%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL--TPPHNFDACFMDLQMPEM 1139
K+ILVVDD+ R L+ G V G A+ +L PP D +D MP+M
Sbjct: 133 KKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPP---DLVLLDANMPDM 189
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMT-----ADVIQASNEQC 1194
DG + ++R LE + +PI+ ++ V++A
Sbjct: 190 DGLELCTRLRQLE----------RTR----------DIPIILLSSKDDDELVVRA----- 224
Query: 1195 MKCGMDDYVSKPFEDEQL 1212
+ G++DY++KP E+ +L
Sbjct: 225 FELGVNDYITKPIEEGEL 242
|
Length = 435 |
| >gnl|CDD|237425 PRK13557, PRK13557, histidine kinase; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 6e-06
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 13/131 (9%)
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYG-GTGIGLSISRCLVELMGGEIGFVSE 890
+ V DTG G+P E R+ PF T++ G GTG+GLS+ + GG + SE
Sbjct: 327 IAVTDTGSGMPPEILARVMDPFF-----TTKEEGKGTGLGLSMVYGFAKQSGGAVRIYSE 381
Query: 891 PGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRG--LRALVIDDKSIRAEVTRYHLQ 948
G G+T ++ N + RG L++DD+ AE+ R L+
Sbjct: 382 VGEGTTVRLYFPASDQAENPEQE-----PKARAIDRGGTETILIVDDRPDVAELARMILE 436
Query: 949 RLEMAVHVANS 959
VA++
Sbjct: 437 DFGYRTLVASN 447
|
Length = 540 |
| >gnl|CDD|163497 TIGR03785, marine_sort_HK, proteobacterial dedicated sortase system histidine kinase | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 7e-06
Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 31/223 (13%)
Query: 573 AINASIGVVVITLLVGHIFHAAI-NRI----AQVEN--DYH-----EMMELKARAEAADV 620
N + ++ I L F + I RI E D + ++R E D+
Sbjct: 408 LFNVILAIMSIGTLALFGFASWISWRIRRLSDDAEAAIDSQGRISGAIPASRSRDEIGDL 467
Query: 621 AKS----------------QFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAH 664
++S + +SHE+RTP+ V L+ L L+ + Y + A
Sbjct: 468 SRSFAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAR 527
Query: 665 NSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVS 724
+ L ++N++ + ++E E F L +VL + + + EL I
Sbjct: 528 EGTERLSMILNNMSEATRLEQAIQSAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNI--- 584
Query: 725 DRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767
P V+ G P Q++ LV N+ +F+ + G I V +
Sbjct: 585 PETPLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQNK 627
|
This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase. Length = 703 |
| >gnl|CDD|181883 PRK09468, ompR, osmolarity response regulator; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 9e-06
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 26/138 (18%)
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+ILVVDD+M R + E L + G V +D+L +F +DL +P D
Sbjct: 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQ-MDRLLTRESFHLMVLDLMLPGED 63
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G ++R N PI+ +TA + ++ G D
Sbjct: 64 GLSICRRLRSQNNPT----------------------PIIMLTAKGEEVDRIVGLEIGAD 101
Query: 1201 DYVSKPFEDEQLYTAVAR 1218
DY+ KPF +L +AR
Sbjct: 102 DYLPKPFNPREL---LAR 116
|
Length = 239 |
| >gnl|CDD|225827 COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889
L++ V DTG GIP E + +IF + S+ + GG GIGL + + LVE +GG I S
Sbjct: 463 LVIEVADTGPGIPPEVRDKIFE---KGVST--KNTGGRGIGLYLVKQLVERLGGSIEVES 517
Query: 890 EPGTGSTFSFTVTFTEGERN 909
E G G+ FS + + N
Sbjct: 518 EKGQGTRFSIYIPKVKERDN 537
|
Length = 537 |
| >gnl|CDD|185376 PRK15479, PRK15479, transcriptional regulatory protein TctD; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 23/130 (17%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
++L+ +DN E AL ++G V CV G AA D L + +D+ MP MDG
Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAA-DHLLQSEMYALAVLDINMPGMDGL 60
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
+ ++R G++ +P+L +TA A + + G DDY
Sbjct: 61 EVLQRLRK----------RGQT------------LPVLLLTARSAVADRVKGLNVGADDY 98
Query: 1203 VSKPFEDEQL 1212
+ KPFE E+L
Sbjct: 99 LPKPFELEEL 108
|
Length = 221 |
| >gnl|CDD|236701 PRK10490, PRK10490, sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-05
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889
L + V D G GIP + IF F + + ++ G G+GL+I R +VE+ GG I +
Sbjct: 811 LQLDVWDNGPGIPPGQEQLIFDKFARGNKESA--IPGVGLGLAICRAIVEVHGGTIWAEN 868
Query: 890 EPGTGSTFSFT 900
P G+ F T
Sbjct: 869 RPEGGACFRVT 879
|
Length = 895 |
| >gnl|CDD|234058 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 832 VTVEDTGVGIPLE-AQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890
+ +ED+G G+ + R+F PF +T G GIG+ R VE +GG I S
Sbjct: 614 IEIEDSGCGMSPAFIRERLFKPF----DTTKGA--GMGIGVYECRQYVEEIGGRIEVEST 667
Query: 891 PGTGSTFSFTV 901
PG G+ F+ +
Sbjct: 668 PGQGTIFTLVL 678
|
Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes [Protein fate, Protein and peptide secretion and trafficking, Signal transduction, Two-component systems]. Length = 679 |
| >gnl|CDD|182412 PRK10365, PRK10365, transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 4e-05
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 23/130 (17%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
ILVVDD++ + + + L+ G V + GR A++++ FD D++M EMDG
Sbjct: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-QVFDLVLCDVRMAEMDGI 65
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
+I+ L I P+L MTA + + +K G DY
Sbjct: 66 ATLKEIKALNPAI----------------------PVLIMTAYSSVETAVEALKTGALDY 103
Query: 1203 VSKPFEDEQL 1212
+ KP + + L
Sbjct: 104 LIKPLDFDNL 113
|
Length = 441 |
| >gnl|CDD|226370 COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-05
Identities = 36/181 (19%), Positives = 73/181 (40%), Gaps = 15/181 (8%)
Query: 579 GVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVS-------- 630
V ++ L HI + + + + D ++Q +
Sbjct: 80 EVTLVILGRSHIVDLTVAPVPEEPGSVLLEFHPRDMQRRLDREQTQHAQQRAVKGLVRGL 139
Query: 631 -HEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLE 689
HEI+ P+ G+ G Q+L D A + Q + + +++D+ ++ +
Sbjct: 140 AHEIKNPLGGIRGAAQLLERALPDEALRELTQLI----IEEADRLRNLVDRLEVLGPQRP 195
Query: 690 PEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNS 749
+ VP ++H+VL+ V +L ++ + L +PE V+GD + Q+ NLV N+
Sbjct: 196 GDRVPVNIHEVLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNA 253
Query: 750 I 750
Sbjct: 254 A 254
|
Length = 363 |
| >gnl|CDD|236532 PRK09470, cpxA, two-component sensor protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 8e-05
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSI 873
L +TV+D G G+P E + +IF PF + D + R GGTG+GL+I
Sbjct: 384 LTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAI 427
|
Length = 461 |
| >gnl|CDD|236531 PRK09467, envZ, osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 9e-05
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI 885
VED G GIP E +F PF + D ++R GTG+GL+I + +V+ G++
Sbjct: 364 FQVEDDGPGIPPEQLKHLFQPFTRGD--SARGSSGTGLGLAIVKRIVDQHNGKV 415
|
Length = 435 |
| >gnl|CDD|236577 PRK09581, pleD, response regulator PleD; Reviewed | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 31/138 (22%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
ILVVDD N ++ E L V G A+ + D +D+ MP MDGF
Sbjct: 5 ILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIA-ICEREQPDIILLDVMMPGMDGF- 62
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMKCG 1198
E+ ++ S ++ H+P++ +TA D ++ ++ G
Sbjct: 63 ----------EVCRRLKSDPATT---------HIPVVMVTALDDPEDRVRG-----LEAG 98
Query: 1199 MDDYVSKPFEDEQLYTAV 1216
DD+++KP D L+ V
Sbjct: 99 ADDFLTKPINDVALFARV 116
|
Length = 457 |
| >gnl|CDD|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI 885
L +T D+ G+ E ++F F + + S +R GG+G+GL+I +VE G I
Sbjct: 384 TLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRI 440
|
Length = 466 |
| >gnl|CDD|233585 TIGR01818, ntrC, nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 33/140 (23%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL---TPPHNFDACFMDLQMPEMD 1140
+ VVDD+ R V E AL + G V + + L P D D++MP D
Sbjct: 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQP----DLLITDVRMPGED 56
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA--DVIQASNEQCMKCG 1198
G QI+ ++ P++ MTA D+ A + G
Sbjct: 57 GLDLLPQIKKRHPQL----------------------PVIVMTAHSDLDTAVA--AYQRG 92
Query: 1199 MDDYVSKPFEDEQLYTAVAR 1218
+Y+ KPF+ ++ T V R
Sbjct: 93 AFEYLPKPFDLDEAVTLVER 112
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]. Length = 463 |
| >gnl|CDD|130454 TIGR01387, cztR_silR_copR, heavy metal response regulator | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 23/135 (17%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
ILVV+D + L + G +V GR + L ++D +D+ +P MDG+Q
Sbjct: 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGL-HLALKDDYDLIILDVMLPGMDGWQ 59
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
+R + P+L +TA A + + G DDY+
Sbjct: 60 ILQTLRRSGKQ----------------------TPVLFLTARDSVADKVKGLDLGADDYL 97
Query: 1204 SKPFEDEQLYTAVAR 1218
KPF +L V
Sbjct: 98 VKPFSFSELLARVRT 112
|
Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. Length = 218 |
| >gnl|CDD|214376 CHL00148, orf27, Ycf27; Reviewed | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 28/133 (21%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
++ILVVDD R++ E L G V G A+ KL D +D+ MP++DG
Sbjct: 7 EKILVVDDEAYIRKILETRLSIIGYEVITASDGEEAL-KLFRKEQPDLVILDVMMPKLDG 65
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA--DVIQASNEQCMKCGM 1199
+ +IR + VPI+ +TA DV + ++ G
Sbjct: 66 YGVCQEIRKESD-----------------------VPIIMLTALGDV--SDRITGLELGA 100
Query: 1200 DDYVSKPFEDEQL 1212
DDYV KPF ++L
Sbjct: 101 DDYVVKPFSPKEL 113
|
Length = 240 |
| >gnl|CDD|131984 TIGR02938, nifL_nitrog, nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 55/307 (17%), Positives = 114/307 (37%), Gaps = 76/307 (24%)
Query: 598 IAQVENDYHEMMELKARAEAADVAKSQFLATVS-------HEIRTPMN---GVLGMLQML 647
IA + N E + A A +A+ + L + H ++ PMN + +LQ
Sbjct: 245 IADISNLREEQERARLSALQALMAEEERLEAIRETLSAAIHRLQGPMNLISAAISVLQRR 304
Query: 648 MDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSL 707
D + A Q A ++G++ + + V+ Q+ E VP +L+ +L +V++L
Sbjct: 305 GDDAGNPASAAMLQQALSAGREHMEALRQVIPQSPQEI------VVPVNLNQILRDVITL 358
Query: 708 FSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767
+ + GI + + +P + +G + R + L
Sbjct: 359 STPRLLAAGIVVDWQPAATLPAI-LGRELQLRSLFKAL---------------------- 395
Query: 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR 827
++ ++ ++ K W+ ++ T L
Sbjct: 396 ------------VDNAIEAMNIKG------------------WKRRELSITTALNGDLIV 425
Query: 828 IKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGF 887
+ ++ D+G GIP + + ++F PF + + G+GLS+++ +V GG I
Sbjct: 426 V----SILDSGPGIPQDLRYKVFEPFFTTKGGSRK---HIGMGLSVAQEIVADHGGIIDL 478
Query: 888 VSEPGTG 894
+ G
Sbjct: 479 DDDYSEG 485
|
NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, Protein interactions]. Length = 494 |
| >gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 3e-04
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 23/136 (16%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
IL+ DD+ NR + + L G V G A+ K++ H +D D+ MP MDGF+
Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQH-YDLLITDVNMPNMDGFE 1019
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
T ++R EQ +S +PI +TA+ E+ + CGM+ +
Sbjct: 1020 LTRKLR-------EQNSS---------------LPIWGLTANAQANEREKGLSCGMNLCL 1057
Query: 1204 SKPFEDEQLYTAVARF 1219
KP + L T +++
Sbjct: 1058 FKPLTLDVLKTHLSQL 1073
|
Length = 1197 |
| >gnl|CDD|170568 PRK10610, PRK10610, chemotaxis regulatory protein CheY; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 5e-04
Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 22/142 (15%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
K + LVVDD RR+ LK+ G V + G A++KL F D MP
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-GGFGFVISDWNMPN 62
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG + IR + + +P+L +TA+ + + + G
Sbjct: 63 MDGLELLKTIR--------------------ADGAMSALPVLMVTAEAKKENIIAAAQAG 102
Query: 1199 MDDYVSKPFEDEQLYTAVARFF 1220
YV KPF L + + F
Sbjct: 103 ASGYVVKPFTAATLEEKLNKIF 124
|
Length = 129 |
| >gnl|CDD|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 8e-04
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGG---TGIGLSISRCLVELMGGEIGFV 888
++VED G GIP A RIF F S R G TG+GL+ R + L GGE+
Sbjct: 403 LSVEDQGPGIPDYALPRIFERFY----SLPRPANGRKSTGLGLAFVREVARLHGGEVTLR 458
Query: 889 SEPGTG 894
+ P G
Sbjct: 459 NRPEGG 464
|
Length = 475 |
| >gnl|CDD|227333 COG5000, NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 8e-04
Identities = 58/288 (20%), Positives = 101/288 (35%), Gaps = 78/288 (27%)
Query: 614 RAEA-ADVAKSQFLATVSHEIR---TPMNGVLGMLQMLMDTEL--DAAQLD-YAQTAHNS 666
R+ A DVA+ ++HEI+ TP+ L + E+ D D T
Sbjct: 482 RSAAWGDVARR-----IAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQ 536
Query: 667 GKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDR 726
+D+ ++++ A++ P+ L +L V L+ + I A
Sbjct: 537 VEDIKRMVDEFRAFARMP----APKLEKSDLRALLKEVSFLY--EIGNDHIVFAAEFGGE 590
Query: 727 VPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNS 786
P + + D Q+ NL+ N+ + A + + + ++ SL+
Sbjct: 591 -PLIGMADATLLGQVFGNLLKNAAE--------------AIEAVEAEERRTALIRVSLD- 634
Query: 787 VQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846
+ GRI V V D G G P E +
Sbjct: 635 ------------------------------------DADGRIV--VDVIDNGKGFPRENR 656
Query: 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTG 894
R P++ T+R GTG+GL+I + +VE GG + + P
Sbjct: 657 HRALEPYV-----TTRE-KGTGLGLAIVKKIVEEHGGRLELHNAPDFD 698
|
Length = 712 |
| >gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.001
Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 14/160 (8%)
Query: 598 IAQVENDYHEMMELKARAEAADVAK----SQFLATVSHEIRTPMNGVLGMLQMLMD---T 650
IA+ E + +A+ E K Q A ++HE+ P L ++ D
Sbjct: 358 IAEREQAEAALR--RAQDELVQAGKLAALGQMSAGIAHELNQP----LAAIRTYADNARL 411
Query: 651 ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710
L+ + + A+ L + + K + + P L + ++ L L
Sbjct: 412 LLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDAAGPVSLREAIEGALELLRG 471
Query: 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSI 750
+ G+EL + P V+ + R Q++ NL+ N++
Sbjct: 472 RLRAAGVELEL-DLPDAPLWVMANEIRLEQVLVNLLQNAL 510
|
Length = 603 |
| >gnl|CDD|225971 COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 26/137 (18%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+L+VDD N L+ G V + G A+ KL D +D++MPEMDG +
Sbjct: 17 VLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEAL-KLLQEEPPDLVLLDVRMPEMDGAE 75
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC---GMD 1200
+ N++ S +P++ +TA A +E + G D
Sbjct: 76 -------VLNKLKAMSPSTR------------RIPVILLTA---YADSEDRQRALEAGAD 113
Query: 1201 DYVSKPFEDEQLYTAVA 1217
DY+SKP ++L V+
Sbjct: 114 DYLSKPISPKELVARVS 130
|
Length = 360 |
| >gnl|CDD|226456 COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 25/136 (18%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+I++VDD+ ++ L + G V A+D L D F+D+ MP M+G
Sbjct: 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV-FKPDLIFLDIVMPYMNGI 60
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
+ Q+R +E+ VPI+ +++ A + M +DDY
Sbjct: 61 EFAEQVRDIESA----------------------VPIIFISSHAEYADDSFGMN--LDDY 96
Query: 1203 VSKPFEDEQLYTAVAR 1218
+ KP E+L A+ R
Sbjct: 97 LPKPVTPEKLNRAIDR 112
|
Length = 361 |
| >gnl|CDD|223855 COG0784, CheY, FOG: CheY-like receiver [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.003
Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 15/124 (12%)
Query: 924 EFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVL 983
GLR LV+DD+ + + + L+ L V A + L LPQ L+L
Sbjct: 2 LLSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRE-----LPQPDLIL 56
Query: 984 IDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLL 1043
+D + + M + + N+P I L A E DR+ + G L
Sbjct: 57 LD---------INMPGMDGIELLRRLRARGPNIPVILLTA-YADEADRERALAAGADDYL 106
Query: 1044 TKPL 1047
TKP+
Sbjct: 107 TKPI 110
|
Length = 130 |
| >gnl|CDD|234828 PRK00742, PRK00742, chemotaxis-specific methylesterase; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.003
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAI--VTCVDCGRAAVDK---LTPPHNFDACFMDLQMP 1137
++LVVDD+ RR+ L I V G A +K L P D +D++MP
Sbjct: 5 RVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLNP----DVITLDVEMP 60
Query: 1138 EMDGFQATWQI 1148
MDG A +I
Sbjct: 61 VMDGLDALEKI 71
|
Length = 354 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1223 | |||
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 100.0 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 100.0 | |
| KOG0519 | 786 | consensus Sensory transduction histidine kinase [S | 100.0 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 100.0 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 100.0 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 100.0 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 100.0 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 100.0 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 100.0 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 100.0 | |
| PRK13557 | 540 | histidine kinase; Provisional | 100.0 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 100.0 | |
| PRK09303 | 380 | adaptive-response sensory kinase; Validated | 100.0 | |
| COG2205 | 890 | KdpD Osmosensitive K+ channel histidine kinase [Si | 100.0 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 100.0 | |
| PRK10604 | 433 | sensor protein RstB; Provisional | 100.0 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 99.98 | |
| PRK10549 | 466 | signal transduction histidine-protein kinase BaeS; | 99.97 | |
| PRK10815 | 485 | sensor protein PhoQ; Provisional | 99.97 | |
| PRK10364 | 457 | sensor protein ZraS; Provisional | 99.97 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 99.97 | |
| PRK10755 | 356 | sensor protein BasS/PmrB; Provisional | 99.97 | |
| TIGR01386 | 457 | cztS_silS_copS heavy metal sensor kinase. Members | 99.97 | |
| PRK09835 | 482 | sensor kinase CusS; Provisional | 99.97 | |
| COG4251 | 750 | Bacteriophytochrome (light-regulated signal transd | 99.97 | |
| TIGR03785 | 703 | marine_sort_HK proteobacterial dedicated sortase s | 99.97 | |
| COG4191 | 603 | Signal transduction histidine kinase regulating C4 | 99.97 | |
| PRK10337 | 449 | sensor protein QseC; Provisional | 99.96 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 99.96 | |
| PRK09470 | 461 | cpxA two-component sensor protein; Provisional | 99.96 | |
| PRK09467 | 435 | envZ osmolarity sensor protein; Provisional | 99.96 | |
| COG3852 | 363 | NtrB Signal transduction histidine kinase, nitroge | 99.96 | |
| PRK11100 | 475 | sensory histidine kinase CreC; Provisional | 99.96 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 99.95 | |
| COG0642 | 336 | BaeS Signal transduction histidine kinase [Signal | 99.94 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 99.94 | |
| PF03924 | 193 | CHASE: CHASE domain; InterPro: IPR006189 The CHASE | 99.93 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 99.93 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 99.92 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 99.9 | |
| COG3614 | 348 | Predicted periplasmic ligand-binding sensor domain | 99.88 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 99.88 | |
| PRK11644 | 495 | sensory histidine kinase UhpB; Provisional | 99.88 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved | 99.86 | |
| COG0745 | 229 | OmpR Response regulators consisting of a CheY-like | 99.84 | |
| COG4192 | 673 | Signal transduction histidine kinase regulating ph | 99.83 | |
| PRK13559 | 361 | hypothetical protein; Provisional | 99.81 | |
| PF02518 | 111 | HATPase_c: Histidine kinase-, DNA gyrase B-, and H | 99.8 | |
| PRK09581 | 457 | pleD response regulator PleD; Reviewed | 99.75 | |
| PRK10935 | 565 | nitrate/nitrite sensor protein NarQ; Provisional | 99.75 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 99.75 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 99.71 | |
| PF00072 | 112 | Response_reg: Response regulator receiver domain; | 99.7 | |
| COG0784 | 130 | CheY FOG: CheY-like receiver [Signal transduction | 99.7 | |
| COG3437 | 360 | Response regulator containing a CheY-like receiver | 99.69 | |
| COG3706 | 435 | PleD Response regulator containing a CheY-like rec | 99.68 | |
| PRK10600 | 569 | nitrate/nitrite sensor protein NarX; Provisional | 99.68 | |
| COG4753 | 475 | Response regulator containing CheY-like receiver d | 99.64 | |
| COG4566 | 202 | TtrR Response regulator [Signal transduction mecha | 99.61 | |
| PRK10547 | 670 | chemotaxis protein CheA; Provisional | 99.6 | |
| PLN03029 | 222 | type-a response regulator protein; Provisional | 99.59 | |
| COG2197 | 211 | CitB Response regulator containing a CheY-like rec | 99.56 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 99.54 | |
| PRK10529 | 225 | DNA-binding transcriptional activator KdpE; Provis | 99.54 | |
| PRK10046 | 225 | dpiA two-component response regulator DpiA; Provis | 99.54 | |
| PRK11173 | 237 | two-component response regulator; Provisional | 99.53 | |
| PRK10816 | 223 | DNA-binding transcriptional regulator PhoP; Provis | 99.52 | |
| PRK09836 | 227 | DNA-binding transcriptional activator CusR; Provis | 99.51 | |
| PRK10766 | 221 | DNA-binding transcriptional regulator TorR; Provis | 99.5 | |
| PRK09468 | 239 | ompR osmolarity response regulator; Provisional | 99.49 | |
| PRK04184 | 535 | DNA topoisomerase VI subunit B; Validated | 99.49 | |
| PRK10701 | 240 | DNA-binding transcriptional regulator RstA; Provis | 99.49 | |
| PRK13856 | 241 | two-component response regulator VirG; Provisional | 99.49 | |
| PRK10643 | 222 | DNA-binding transcriptional regulator BasR; Provis | 99.48 | |
| PRK10161 | 229 | transcriptional regulator PhoB; Provisional | 99.48 | |
| PRK10955 | 232 | DNA-binding transcriptional regulator CpxR; Provis | 99.47 | |
| TIGR02154 | 226 | PhoB phosphate regulon transcriptional regulatory | 99.47 | |
| PRK10430 | 239 | DNA-binding transcriptional activator DcuR; Provis | 99.47 | |
| TIGR03787 | 227 | marine_sort_RR proteobacterial dedicated sortase s | 99.46 | |
| TIGR02875 | 262 | spore_0_A sporulation transcription factor Spo0A. | 99.46 | |
| PRK10336 | 219 | DNA-binding transcriptional regulator QseB; Provis | 99.46 | |
| PRK11517 | 223 | transcriptional regulatory protein YedW; Provision | 99.44 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 99.44 | |
| smart00387 | 111 | HATPase_c Histidine kinase-like ATPases. Histidine | 99.43 | |
| TIGR01387 | 218 | cztR_silR_copR heavy metal response regulator. Mem | 99.42 | |
| PRK11083 | 228 | DNA-binding response regulator CreB; Provisional | 99.42 | |
| CHL00148 | 240 | orf27 Ycf27; Reviewed | 99.4 | |
| PRK09958 | 204 | DNA-binding transcriptional activator EvgA; Provis | 99.4 | |
| PRK14084 | 246 | two-component response regulator; Provisional | 99.39 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 99.39 | |
| PRK10840 | 216 | transcriptional regulator RcsB; Provisional | 99.39 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 99.38 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 99.38 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 99.36 | |
| PRK10360 | 196 | DNA-binding transcriptional activator UhpA; Provis | 99.36 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 99.36 | |
| PRK12555 | 337 | chemotaxis-specific methylesterase; Provisional | 99.35 | |
| PRK09935 | 210 | transcriptional regulator FimZ; Provisional | 99.35 | |
| PRK09483 | 217 | response regulator; Provisional | 99.35 | |
| PRK11697 | 238 | putative two-component response-regulatory protein | 99.34 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 99.34 | |
| KOG0519 | 786 | consensus Sensory transduction histidine kinase [S | 99.34 | |
| COG4567 | 182 | Response regulator consisting of a CheY-like recei | 99.33 | |
| PRK10710 | 240 | DNA-binding transcriptional regulator BaeR; Provis | 99.33 | |
| PRK15479 | 221 | transcriptional regulatory protein TctD; Provision | 99.3 | |
| TIGR01052 | 488 | top6b DNA topoisomerase VI, B subunit. This model | 99.28 | |
| PRK09390 | 202 | fixJ response regulator FixJ; Provisional | 99.27 | |
| PRK09581 | 457 | pleD response regulator PleD; Reviewed | 99.26 | |
| PRK14868 | 795 | DNA topoisomerase VI subunit B; Provisional | 99.25 | |
| PRK00742 | 354 | chemotaxis-specific methylesterase; Provisional | 99.25 | |
| PF00512 | 68 | HisKA: His Kinase A (phospho-acceptor) domain; Int | 99.25 | |
| PRK10100 | 216 | DNA-binding transcriptional regulator CsgD; Provis | 99.21 | |
| COG3452 | 297 | Predicted periplasmic ligand-binding sensor domain | 99.21 | |
| PRK10610 | 129 | chemotaxis regulatory protein CheY; Provisional | 99.21 | |
| PRK11475 | 207 | DNA-binding transcriptional activator BglJ; Provis | 99.2 | |
| cd00075 | 103 | HATPase_c Histidine kinase-like ATPases; This fami | 99.19 | |
| PRK15369 | 211 | two component system sensor kinase SsrB; Provision | 99.19 | |
| COG2201 | 350 | CheB Chemotaxis response regulator containing a Ch | 99.18 | |
| PRK10651 | 216 | transcriptional regulator NarL; Provisional | 99.18 | |
| PRK13558 | 665 | bacterio-opsin activator; Provisional | 99.18 | |
| PRK10403 | 215 | transcriptional regulator NarP; Provisional | 99.17 | |
| PRK13435 | 145 | response regulator; Provisional | 99.17 | |
| TIGR01925 | 137 | spIIAB anti-sigma F factor. This model describes t | 99.16 | |
| PRK14867 | 659 | DNA topoisomerase VI subunit B; Provisional | 99.16 | |
| COG0643 | 716 | CheA Chemotaxis protein histidine kinase and relat | 99.09 | |
| PRK09191 | 261 | two-component response regulator; Provisional | 99.08 | |
| COG3707 | 194 | AmiR Response regulator with putative antiterminat | 99.06 | |
| PRK03660 | 146 | anti-sigma F factor; Provisional | 99.05 | |
| PRK15411 | 207 | rcsA colanic acid capsular biosynthesis activation | 99.03 | |
| PRK10693 | 303 | response regulator of RpoS; Provisional | 99.02 | |
| COG4585 | 365 | Signal transduction histidine kinase [Signal trans | 98.99 | |
| cd00156 | 113 | REC Signal receiver domain; originally thought to | 98.98 | |
| COG3851 | 497 | UhpB Signal transduction histidine kinase, glucose | 98.89 | |
| COG3920 | 221 | Signal transduction histidine kinase [Signal trans | 98.87 | |
| COG3850 | 574 | NarQ Signal transduction histidine kinase, nitrate | 98.77 | |
| COG2972 | 456 | Predicted signal transduction protein with a C-ter | 98.75 | |
| PRK04069 | 161 | serine-protein kinase RsbW; Provisional | 98.73 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 98.73 | |
| COG3275 | 557 | LytS Putative regulator of cell autolysis [Signal | 98.61 | |
| COG3279 | 244 | LytT Response regulator of the LytR/AlgR family [T | 98.61 | |
| TIGR01924 | 159 | rsbW_low_gc serine-protein kinase RsbW. This model | 98.45 | |
| smart00388 | 66 | HisKA His Kinase A (phosphoacceptor) domain. Dimer | 98.39 | |
| COG4564 | 459 | Signal transduction histidine kinase [Signal trans | 98.36 | |
| PF14501 | 100 | HATPase_c_5: GHKL domain | 98.28 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 98.25 | |
| KOG0787 | 414 | consensus Dehydrogenase kinase [Signal transductio | 98.18 | |
| COG3706 | 435 | PleD Response regulator containing a CheY-like rec | 98.05 | |
| cd00082 | 65 | HisKA Histidine Kinase A (dimerization/phosphoacce | 97.91 | |
| TIGR00585 | 312 | mutl DNA mismatch repair protein MutL. All protein | 97.81 | |
| PF13581 | 125 | HATPase_c_2: Histidine kinase-like ATPase domain | 97.58 | |
| COG1389 | 538 | DNA topoisomerase VI, subunit B [DNA replication, | 97.4 | |
| PF00072 | 112 | Response_reg: Response regulator receiver domain; | 97.05 | |
| COG0745 | 229 | OmpR Response regulators consisting of a CheY-like | 96.92 | |
| smart00448 | 55 | REC cheY-homologous receiver domain. CheY regulate | 96.74 | |
| COG2172 | 146 | RsbW Anti-sigma regulatory factor (Ser/Thr protein | 96.42 | |
| PRK00095 | 617 | mutL DNA mismatch repair protein; Reviewed | 96.36 | |
| PF06490 | 109 | FleQ: Flagellar regulatory protein FleQ; InterPro: | 96.08 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 95.98 | |
| COG0784 | 130 | CheY FOG: CheY-like receiver [Signal transduction | 95.95 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 95.87 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 95.4 | |
| PF13589 | 137 | HATPase_c_3: Histidine kinase-, DNA gyrase B-, and | 95.33 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 95.17 | |
| PLN03029 | 222 | type-a response regulator protein; Provisional | 95.13 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 94.72 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 94.69 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 94.55 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 94.24 | |
| COG3437 | 360 | Response regulator containing a CheY-like receiver | 94.22 | |
| PRK05559 | 631 | DNA topoisomerase IV subunit B; Reviewed | 94.21 | |
| PRK10816 | 223 | DNA-binding transcriptional regulator PhoP; Provis | 93.02 | |
| PRK11173 | 237 | two-component response regulator; Provisional | 92.98 | |
| PRK10643 | 222 | DNA-binding transcriptional regulator BasR; Provis | 92.91 | |
| PRK09836 | 227 | DNA-binding transcriptional activator CusR; Provis | 92.84 | |
| PRK09468 | 239 | ompR osmolarity response regulator; Provisional | 92.76 | |
| PRK13856 | 241 | two-component response regulator VirG; Provisional | 92.63 | |
| PRK10766 | 221 | DNA-binding transcriptional regulator TorR; Provis | 92.13 | |
| PRK10336 | 219 | DNA-binding transcriptional regulator QseB; Provis | 92.11 | |
| TIGR03787 | 227 | marine_sort_RR proteobacterial dedicated sortase s | 92.1 | |
| PRK00742 | 354 | chemotaxis-specific methylesterase; Provisional | 92.02 | |
| COG4567 | 182 | Response regulator consisting of a CheY-like recei | 92.01 | |
| PRK11517 | 223 | transcriptional regulatory protein YedW; Provision | 91.98 | |
| TIGR02154 | 226 | PhoB phosphate regulon transcriptional regulatory | 91.95 | |
| PRK10701 | 240 | DNA-binding transcriptional regulator RstA; Provis | 91.92 | |
| PRK10161 | 229 | transcriptional regulator PhoB; Provisional | 91.82 | |
| COG4753 | 475 | Response regulator containing CheY-like receiver d | 91.78 | |
| PRK10529 | 225 | DNA-binding transcriptional activator KdpE; Provis | 91.77 | |
| COG4566 | 202 | TtrR Response regulator [Signal transduction mecha | 91.54 | |
| PRK10955 | 232 | DNA-binding transcriptional regulator CpxR; Provis | 91.54 | |
| cd02071 | 122 | MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin | 91.28 | |
| PRK10840 | 216 | transcriptional regulator RcsB; Provisional | 91.25 | |
| TIGR02875 | 262 | spore_0_A sporulation transcription factor Spo0A. | 91.23 | |
| TIGR01055 | 625 | parE_Gneg DNA topoisomerase IV, B subunit, proteob | 91.13 | |
| CHL00148 | 240 | orf27 Ycf27; Reviewed | 91.11 | |
| PRK09958 | 204 | DNA-binding transcriptional activator EvgA; Provis | 90.99 | |
| PRK10046 | 225 | dpiA two-component response regulator DpiA; Provis | 90.87 | |
| PRK11083 | 228 | DNA-binding response regulator CreB; Provisional | 90.74 | |
| PF03709 | 115 | OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal | 90.74 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 90.68 | |
| PRK14084 | 246 | two-component response regulator; Provisional | 90.56 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 90.24 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 90.07 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 90.07 | |
| PRK13435 | 145 | response regulator; Provisional | 89.77 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 89.74 | |
| PRK05644 | 638 | gyrB DNA gyrase subunit B; Validated | 89.62 | |
| PRK10430 | 239 | DNA-binding transcriptional activator DcuR; Provis | 89.59 | |
| TIGR01059 | 654 | gyrB DNA gyrase, B subunit. This model describes t | 89.43 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 89.3 | |
| PRK05218 | 613 | heat shock protein 90; Provisional | 89.24 | |
| PRK02261 | 137 | methylaspartate mutase subunit S; Provisional | 89.19 | |
| PRK12555 | 337 | chemotaxis-specific methylesterase; Provisional | 88.97 | |
| cd02067 | 119 | B12-binding B12 binding domain (B12-BD). This doma | 88.95 | |
| PRK14083 | 601 | HSP90 family protein; Provisional | 88.92 | |
| PRK09483 | 217 | response regulator; Provisional | 88.58 | |
| PRK10710 | 240 | DNA-binding transcriptional regulator BaeR; Provis | 87.8 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.61 | |
| PRK15479 | 221 | transcriptional regulatory protein TctD; Provision | 87.12 | |
| TIGR01387 | 218 | cztR_silR_copR heavy metal response regulator. Mem | 86.93 | |
| PTZ00272 | 701 | heat shock protein 83 kDa (Hsp83); Provisional | 85.74 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 85.7 | |
| COG5381 | 184 | Uncharacterized protein conserved in bacteria [Fun | 85.45 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 85.19 | |
| PRK13557 | 540 | histidine kinase; Provisional | 84.89 | |
| PRK11697 | 238 | putative two-component response-regulatory protein | 84.51 | |
| COG2197 | 211 | CitB Response regulator containing a CheY-like rec | 84.38 | |
| PRK10360 | 196 | DNA-binding transcriptional activator UhpA; Provis | 83.86 | |
| PRK15426 | 570 | putative diguanylate cyclase YedQ; Provisional | 83.46 | |
| PTZ00130 | 814 | heat shock protein 90; Provisional | 83.35 | |
| smart00433 | 594 | TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras | 82.85 | |
| COG4999 | 140 | Uncharacterized domain of BarA-like signal transdu | 82.8 | |
| TIGR03815 | 322 | CpaE_hom_Actino helicase/secretion neighborhood Cp | 82.27 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 81.94 | |
| PRK09935 | 210 | transcriptional regulator FimZ; Provisional | 81.81 | |
| COG0323 | 638 | MutL DNA mismatch repair enzyme (predicted ATPase) | 81.67 | |
| PRK09390 | 202 | fixJ response regulator FixJ; Provisional | 81.55 | |
| PRK10610 | 129 | chemotaxis regulatory protein CheY; Provisional | 81.5 | |
| PRK09191 | 261 | two-component response regulator; Provisional | 80.69 |
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-60 Score=613.25 Aligned_cols=508 Identities=35% Similarity=0.520 Sum_probs=415.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000920 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGR 687 (1223)
Q Consensus 608 l~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgk 687 (1223)
+...+.+++++.+.|++|++++||||||||++|+|+++++.....++.+++|++.+..++++|..+|+++++++|+++|+
T Consensus 279 l~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~ 358 (919)
T PRK11107 279 LDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGK 358 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455677788888999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred CCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEcc
Q 000920 688 LEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767 (1223)
Q Consensus 688 l~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~ 767 (1223)
+.++..+|++.+++++++..+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+ +|.|.|.+....
T Consensus 359 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~-~g~v~i~v~~~~ 437 (919)
T PRK11107 359 LVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTE-SGNIDILVELRA 437 (919)
T ss_pred cEEEEeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCC-CCcEEEEEEEEe
Confidence 9999999999999999999999999999999999998888888899999999999999999999995 677777765432
Q ss_pred CccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHh
Q 000920 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847 (1223)
Q Consensus 768 ~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~ 847 (1223)
. ..+...+.|+|.|||+|||++.++
T Consensus 438 ~-------------------------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~ 462 (919)
T PRK11107 438 L-------------------------------------------------------SNTKVQLEVQIRDTGIGISERQQS 462 (919)
T ss_pred c-------------------------------------------------------CCCeeEEEEEEEEeCCCcCHHHHH
Confidence 1 011225889999999999999999
Q ss_pred hhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCcccccC
Q 000920 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRG 927 (1223)
Q Consensus 848 rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~~~~~g 927 (1223)
++|+||++.+.+++++++|+||||+|||++++.|||+|+++|.+|+||+|+|++|+....... ........+.|
T Consensus 463 ~if~~f~~~~~~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~------~~~~~~~~~~g 536 (919)
T PRK11107 463 QLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPI------IDGLPTDCLAG 536 (919)
T ss_pred HHhhhhccCCCCCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccc------cccCCccccCC
Confidence 999999999998888899999999999999999999999999999999999999996543211 11122345778
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.+++++||++..+..+...|..+|+.+..+.+.... . ...++++++|.+...................
T Consensus 537 ~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~l----~-------~~~~d~il~~~~~~~~~~~~~~~~~~~~~~~- 604 (919)
T PRK11107 537 KRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQL----P-------EAHYDILLLGLPVTFREPLTMLHERLAKAKS- 604 (919)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHHh----c-------cCCCCEEEecccCCCCCCHHHHHHHHHhhhh-
Confidence 999999999999999999999999999998887761 1 2346778888766543333322222222111
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEEEE
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVV 1087 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rILVV 1087 (1223)
..+.++++.++............|...++.||+....+...+......... ...+.......+.+||||
T Consensus 605 -------~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~----~~~~~~~~~~~~~~vLiv 673 (919)
T PRK11107 605 -------MTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPCHHKQP----PLLPPTDESRLPLTVMAV 673 (919)
T ss_pred -------cCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhhccccc----ccccccccccCCCeEEEE
Confidence 123344555555555556666788889999999988776655432110000 000001111235689999
Q ss_pred ecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccc
Q 000920 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAE 1167 (1223)
Q Consensus 1088 DDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~ 1167 (1223)
|||+.++..+..+|+..|+.|..+.+|.+|++.+.. ..||+||||+.||+|||+++++.||+...
T Consensus 674 dd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~-~~~dlil~D~~mp~~~g~~~~~~lr~~~~-------------- 738 (919)
T PRK11107 674 DDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQ-RPFDLILMDIQMPGMDGIRACELIRQLPH-------------- 738 (919)
T ss_pred eCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-CCCCEEEEeCCCCCCcHHHHHHHHHhccc--------------
Confidence 999999999999999999999999999999998864 68999999999999999999999997432
Q ss_pred cccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1168 MFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1168 ~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..++|||++|++...+...+|+++||+||+.||++.++|...+.+++.
T Consensus 739 ------~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 786 (919)
T PRK11107 739 ------NQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKP 786 (919)
T ss_pred ------CCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcc
Confidence 236899999999999999999999999999999999999999999864
|
|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=588.17 Aligned_cols=482 Identities=29% Similarity=0.453 Sum_probs=372.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000920 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGR 687 (1223)
Q Consensus 608 l~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgk 687 (1223)
++++++++++++++|++|+++|||||||||++|+|++++|....++++++++++.+..++++|..+|+++||++|++++.
T Consensus 433 L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~~~ 512 (924)
T PRK10841 433 LQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQ 512 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445566777888999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred CCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEcc
Q 000920 688 LEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767 (1223)
Q Consensus 688 l~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~ 767 (1223)
+.++..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+ +|.|.|.+...+
T Consensus 513 ~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~-~G~I~I~v~~~~ 591 (924)
T PRK10841 513 LKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTD-TGCIVLHVRVDG 591 (924)
T ss_pred ceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEEeC
Confidence 9999999999999999999999999999999999988888878999999999999999999999995 677877765321
Q ss_pred CccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHh
Q 000920 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847 (1223)
Q Consensus 768 ~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~ 847 (1223)
..+.|+|+|||+|||++.++
T Consensus 592 ------------------------------------------------------------~~l~i~V~DtG~GI~~e~~~ 611 (924)
T PRK10841 592 ------------------------------------------------------------DYLSFRVRDTGVGIPAKEVV 611 (924)
T ss_pred ------------------------------------------------------------CEEEEEEEEcCcCCCHHHHH
Confidence 15789999999999999999
Q ss_pred hhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCcccccC
Q 000920 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRG 927 (1223)
Q Consensus 848 rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~~~~~g 927 (1223)
++|+||++.+.+..+..+|+||||+||++|+++|||+|+++|.+|+||+|+|.+|+....... ........+
T Consensus 612 ~lFepF~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~~--------~~~~~~~~g 683 (924)
T PRK10841 612 RLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPQ--------KKGVEGLQG 683 (924)
T ss_pred HHhcccccCCCCCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCcccccc--------cccCcccCC
Confidence 999999999887777888999999999999999999999999999999999999986432211 112234578
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.+++++.+++........+++++|..+....... ....++++.|........... ...-...
T Consensus 684 ~~i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~~~--------------~~~~d~~i~d~~~~~~~~~~~---~~~~~~~- 745 (924)
T PRK10841 684 KRCWLAVRNASLEQFLETLLQRSGIQVQRYEGQE--------------PTPEDVLITDDPVQKKWQGRA---VITFCRR- 745 (924)
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCCeEEEccccc--------------CCcCcEEEEcCccccccchhh---hhhhhhc-
Confidence 8899999888888899999999999987654211 112234444432211100000 0000000
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcch---hH-hhhhcCCCccccCCCCcE
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESS---KK-LQQKRKKPSLGHLLKGKQ 1083 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~---~~-~~~~~~~~~~~~~~~~~r 1083 (1223)
.. ..|. ... ....+.+|.....+...+....... .. ...............+.+
T Consensus 746 -~~----~~~~---------------~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (924)
T PRK10841 746 -HI----GIPL---------------EIA--PGEWVHSTATPHELPALLARIYRIELESDDSANALPSTDKAVSDNDDMM 803 (924)
T ss_pred -cc----cChh---------------hcc--cCceeeccCChHHHHHHHHHHhhcccccccccccccccccccccCCCCE
Confidence 00 0000 000 0012223322222221111100000 00 000000000011124579
Q ss_pred EEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCC
Q 000920 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGE 1163 (1223)
Q Consensus 1084 ILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~ 1163 (1223)
|||||||+.++..+..+|++.|+.|..+.||.+|++.+.. ..||+||||++||+|||+++++.||+..
T Consensus 804 ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~-~~~DlVl~D~~mP~mdG~el~~~ir~~~----------- 871 (924)
T PRK10841 804 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK-NHIDIVLTDVNMPNMDGYRLTQRLRQLG----------- 871 (924)
T ss_pred EEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh-CCCCEEEEcCCCCCCCHHHHHHHHHhcC-----------
Confidence 9999999999999999999999999999999999999874 6799999999999999999999999643
Q ss_pred cccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1164 ~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|++...++..+|+++|||+||.||++.++|...+.++..
T Consensus 872 -----------~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~ 918 (924)
T PRK10841 872 -----------LTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAE 918 (924)
T ss_pred -----------CCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 25799999999999999999999999999999999999999988754
|
|
| >KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-60 Score=597.37 Aligned_cols=768 Identities=33% Similarity=0.402 Sum_probs=550.7
Q ss_pred CccceeeeccccccceeeeccCCChhhHHHHHHHHHcCCcccccceeecccCCceEEEEEEeeccCCCCCCCHHHHH-Hh
Q 000920 410 DEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRI-EA 488 (1223)
Q Consensus 410 ~~Y~Pvi~~~~~~~~~~g~Dm~s~~~rr~ai~~Ar~tg~~~lt~p~~L~~~~~~G~~l~~pvy~~~~~~~~~~~~r~-~a 488 (1223)
.+|.|+++...+..+.+.+|...+-+++.+-..++-++..+++.++....+...+...++-++...++.......+. ++
T Consensus 4 ~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~ 83 (786)
T KOG0519|consen 4 IESKPLKFNNDTISSIVTLDNDDGGEDLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEA 83 (786)
T ss_pred cccccccccccceeEEEEeecCCCchhhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhccccccccccccee
Confidence 78999999999999999999999999999999999999999999998887777777777777766665555444443 33
Q ss_pred hheEEEEeeehHHHHHHHHHhhhccceEEEEEeecCCCCCCccccCCCCCCccceEeeccCCCCCccccceeee--eccC
Q 000920 489 TLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGPDVTDTGLLRVSNLDFGDPSRKHEMHCR--FKQK 566 (1223)
Q Consensus 489 ~~G~v~~~~~v~~l~~~~l~~~~~~~~i~v~vyd~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~ 566 (1223)
...+-...++..-.....+.....+......++..........+|+.........++....+..+.+.+.+.++ ....
T Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~ 163 (786)
T KOG0519|consen 84 GVLSEFIAFDNLCGATHLLNGWTSYTSHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAE 163 (786)
T ss_pred ccccchhhhhhhhhhcccchhhhcCCccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchh
Confidence 33555556666655555555555555565666666555555667777666665666666777777777777776 3333
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHH
Q 000920 567 PPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQ--FLATVSHEIRTPMNGVLGML 644 (1223)
Q Consensus 567 ~~~~w~~~~~~i~~lvi~llv~~i~~~~i~ri~~ve~~~~el~e~k~~ae~a~~aKs~--FLA~vSHELRTPLn~IlG~l 644 (1223)
....+..+............+.+....+..+...++....++.+....++++...+++ |+++++|||||||++ |+.
T Consensus 164 l~~~~~~i~~s~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~~~ 241 (786)
T KOG0519|consen 164 LDYEVGLINTSLETLSIVRMLTHEIRAALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--GML 241 (786)
T ss_pred hhhhhhhhhhhhheeeeeeeeeeehhhhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeeccccc--Ccc
Confidence 4455555566666566666666777788888887888888888888888888888888 999999999999999 888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEec
Q 000920 645 QMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVS 724 (1223)
Q Consensus 645 elL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~ 724 (1223)
..+.++..+.+++.+....+.++..++.++|+++|.+++++|.+++...+|++..+++.+.+.+.+.+..++..+...++
T Consensus 242 ~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~ 321 (786)
T KOG0519|consen 242 GGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLS 321 (786)
T ss_pred eEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccc
Q 000920 725 DRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVV 804 (1223)
Q Consensus 725 ~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~ 804 (1223)
...|..+.+|+.+++||+.|+++||+||| ..|+|..+++..+......+......... +-.+....
T Consensus 322 ~~~p~~v~~de~~~~qv~~n~v~naik~t-~~~~i~~~~~~~~~~~~~~~~l~~~~~e~-------------~~~~~~~~ 387 (786)
T KOG0519|consen 322 SGVPRNVRGDEARLRQVIANLVSNAIKFT-HAGHLEESVIAREELSESNDVLLRAKEEA-------------HMAGKARI 387 (786)
T ss_pred CCCcceeeccceeeeeeehhhccceeccc-ccceEEEEEEeehhcchhhHHHHhhhhhh-------------hhccchhh
Confidence 99999999999999999999999999999 68999999988765432211111000000 00000000
Q ss_pred ccccccc-ccccccCccccccccceEEEEEEEecCCCCCHHhHhh-hcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcC
Q 000920 805 DRWKSWE-NFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR-IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMG 882 (1223)
Q Consensus 805 ~~~~~w~-~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~r-LFepF~q~d~stsr~~gGTGLGLsI~k~LVelmg 882 (1223)
+....|. ..+..-.....-...-....+.+.|+|.||+.+.... +|.+|.|++.+.++.++|+|+|++|+++++++|+
T Consensus 388 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~ 467 (786)
T KOG0519|consen 388 DFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMS 467 (786)
T ss_pred hHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHH
Confidence 0000000 0000000000000011245688999999999998888 9999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCcccccCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHH
Q 000920 883 GEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQL 962 (1223)
Q Consensus 883 G~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~~~~~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~ 962 (1223)
|.+.+.+....|++|+|.+++....+................+.|..+++++-+..+..+.....+.+|..+++..+...
T Consensus 468 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~ 547 (786)
T KOG0519|consen 468 GEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSL 547 (786)
T ss_pred HHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEecccCccccccccchh
Confidence 99999999999999999999977654433211111233344566766666666665555666666777888887766665
Q ss_pred HhhhhcccCCCCCCCcceEEEecccccchhhhHH-HH-HHHHHHHhcCCcccccCCCeEEEEeccCCccchhhhhcCCce
Q 000920 963 ACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLV-LH-YMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIV 1040 (1223)
Q Consensus 963 A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~ 1040 (1223)
++-....... .-.....++...+....+.. .. ......+. . ......+..+.++.+.......+.......
T Consensus 548 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (786)
T KOG0519|consen 548 AFWFLDLSLS----DLEVCKQIEDNEEGSNNGDISSSNPLHKSLRD-L--TSKLSSGSGLSLALCPENSQLMEGNIGLVP 620 (786)
T ss_pred hhhhcccccc----cchheEEeeeccccccCCCcchhhhhhhcccc-c--hhhcccccccccccchhhHHhhhccccccc
Confidence 5544322211 11233444544443322111 00 00011000 0 000012333333332221111111111111
Q ss_pred -eeecccccccccccccCCCCcc-hhHhhhhc---CCCccccCCCCcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHH
Q 000920 1041 -TLLTKPLRLSVLIGCFQEDPES-SKKLQQKR---KKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR 1115 (1223)
Q Consensus 1041 -~~l~KPl~~s~L~~~l~~~~~~-~~~~~~~~---~~~~~~~~~~~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~ 1115 (1223)
....+|.....+..++...... +....... ..+.....++|++|||||||.+|++|++.+|+++|++++++.+|.
T Consensus 621 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~ 700 (786)
T KOG0519|consen 621 SSDGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQ 700 (786)
T ss_pred ccccCCccHHHHHHhhccccccccccccCCCcccccCccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcH
Confidence 1223344444455555443322 11111111 112355678899999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHH
Q 000920 1116 AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195 (1223)
Q Consensus 1116 eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l 1195 (1223)
||++++.+++.||+||||+|||+|||+|++++||+.+ .+|+|||||||++++++.++|+
T Consensus 701 e~l~~~~~~~~y~~ifmD~qMP~mDG~e~~~~irk~~---------------------~~~~pIvAlTa~~~~~~~~~c~ 759 (786)
T KOG0519|consen 701 EALDKLKPPHSYDVIFMDLQMPEMDGYEATREIRKKE---------------------RWHLPIVALTADADPSTEEECL 759 (786)
T ss_pred HHHHhcCCCCcccEEEEEcCCcccchHHHHHHHHHhh---------------------cCCCCEEEEecCCcHHHHHHHH
Confidence 9999999789999999999999999999999999754 2689999999999999999999
Q ss_pred HcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1196 KCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1196 ~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
++|||+||+|||+.+.|...+++++.
T Consensus 760 ~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 760 EVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred HhCCceEEcccccHHHHHHHHHHHhc
Confidence 99999999999999999999999985
|
|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=551.46 Aligned_cols=427 Identities=35% Similarity=0.496 Sum_probs=332.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000920 608 MMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGR 687 (1223)
Q Consensus 608 l~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgk 687 (1223)
+.+.++++++++..|++|++++||||||||++|.|++++|.+...+++++++++.+..++.+|..+||++|+++|+|++.
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~~ 463 (921)
T PRK15347 384 LAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDFSRIESGQ 463 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33445566677788999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred CCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEcc
Q 000920 688 LEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767 (1223)
Q Consensus 688 l~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~ 767 (1223)
+.++..++++.++++++...+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+ +|.|.|++...+
T Consensus 464 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~-~g~I~i~~~~~~ 542 (921)
T PRK15347 464 MTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTE-TGGIRLRVKRHE 542 (921)
T ss_pred ccceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCC-CCCEEEEEEEcC
Confidence 9999999999999999999999999999999999998888888999999999999999999999994 677888775322
Q ss_pred CccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHh
Q 000920 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847 (1223)
Q Consensus 768 ~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~ 847 (1223)
+ .+.|+|+|||+|||++.++
T Consensus 543 ~------------------------------------------------------------~~~i~V~D~G~Gi~~~~~~ 562 (921)
T PRK15347 543 Q------------------------------------------------------------QLCFTVEDTGCGIDIQQQQ 562 (921)
T ss_pred C------------------------------------------------------------EEEEEEEEcCCCCCHHHHH
Confidence 1 5789999999999999999
Q ss_pred hhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCcccccC
Q 000920 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRG 927 (1223)
Q Consensus 848 rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~~~~~g 927 (1223)
+||+||+|.+.. .+|+||||+||+++++.|||+|+++|++|+||+|+|.+|+........ ..+
T Consensus 563 ~if~~f~~~~~~----~~g~GLGL~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~~~~~~~-------------~~~ 625 (921)
T PRK15347 563 QIFTPFYQADTH----SQGTGLGLTIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNEYAPPEP-------------LKG 625 (921)
T ss_pred HHhcCcccCCCC----CCCCchHHHHHHHHHHHcCCEEEEEecCCCceEEEEEEECCCCCCccc-------------ccc
Confidence 999999987642 469999999999999999999999999999999999999864221100 000
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
. ..........+..+|............ ... +...... .+.......
T Consensus 626 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-----~~~~~~~----~~~~~~~~~--- 672 (921)
T PRK15347 626 E--------LSAPLALHRQLSAWGITCQPGHQNPAL-------------LDP-----ELAYLPG----RLYDLLQQI--- 672 (921)
T ss_pred c--------ccchHHHHHHHHHcCCcccccccchhh-------------cch-----hhhhcch----HHHHHHHHH---
Confidence 0 000111223344444433221100000 000 0000000 000000000
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEEEE
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVV 1087 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rILVV 1087 (1223)
....+. ......+ ....+.+||||
T Consensus 673 ------------------------------------------------~~~~~~-----~~~~~~~---~~~~~~~iLiv 696 (921)
T PRK15347 673 ------------------------------------------------IQGAPN-----EPVINLP---LQPWQLQILLV 696 (921)
T ss_pred ------------------------------------------------hhcCCC-----cccccCC---CCcccCCEEEE
Confidence 000000 0000000 01234589999
Q ss_pred ecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccc
Q 000920 1088 DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAE 1167 (1223)
Q Consensus 1088 DDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~ 1167 (1223)
|||+.++..+..+|+..|+.+.++.+|.+|++.+.. +.||+||||++||+|||++++++||+.+..
T Consensus 697 dd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~dlil~D~~mp~~~G~~~~~~ir~~~~~------------- 762 (921)
T PRK15347 697 DDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ-HRFDLVLMDIRMPGLDGLETTQLWRDDPNN------------- 762 (921)
T ss_pred eCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhchhh-------------
Confidence 999999999999999999999999999999998864 679999999999999999999999974321
Q ss_pred cccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1168 MFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1168 ~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
...++|||++|++...+...+|+++||++|+.||++.++|..++.+.+
T Consensus 763 -----~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 810 (921)
T PRK15347 763 -----LDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAA 810 (921)
T ss_pred -----cCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 124689999999999999999999999999999999999999998764
|
|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=555.76 Aligned_cols=374 Identities=42% Similarity=0.656 Sum_probs=328.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000920 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESG 686 (1223)
Q Consensus 607 el~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesg 686 (1223)
.....+.++++++++|++|+++|||||||||++|.|++++|.+..++++++++++.+..++++|..+|+++++++++|++
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~ 528 (968)
T TIGR02956 449 NHAKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAG 528 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455677888899999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEc
Q 000920 687 RLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLA 766 (1223)
Q Consensus 687 kl~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~ 766 (1223)
...++..+|++.+++++++..+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+ +|.|.|.+...
T Consensus 529 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~-~g~i~i~~~~~ 607 (968)
T TIGR02956 529 HLSISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTD-RGSVVLRVSLN 607 (968)
T ss_pred CCeeeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCC-CCeEEEEEEEc
Confidence 99999999999999999999999999999999999998888888999999999999999999999994 68888877543
Q ss_pred cCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhH
Q 000920 767 DDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQ 846 (1223)
Q Consensus 767 ~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~ 846 (1223)
++ ..+.|+|+|||+|||++.+
T Consensus 608 ~~-----------------------------------------------------------~~~~i~V~D~G~Gi~~~~~ 628 (968)
T TIGR02956 608 DD-----------------------------------------------------------SSLLFEVEDTGCGIAEEEQ 628 (968)
T ss_pred CC-----------------------------------------------------------CeEEEEEEeCCCCCCHHHH
Confidence 21 0278999999999999999
Q ss_pred hhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCccccc
Q 000920 847 VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFR 926 (1223)
Q Consensus 847 ~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~~~~~ 926 (1223)
++||+||++.+ ..+..+|+||||+|||++++.|||+|.++|.+|+||+|+|++|+...+....
T Consensus 629 ~~if~~f~~~~--~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~--------------- 691 (968)
T TIGR02956 629 ATLFDAFTQAD--GRRRSGGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAED--------------- 691 (968)
T ss_pred HHHHhhhhccC--CCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCcccc---------------
Confidence 99999999998 3455689999999999999999999999999999999999999753210000
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
..
T Consensus 692 --------------------------------------------------~~---------------------------- 693 (968)
T TIGR02956 692 --------------------------------------------------SA---------------------------- 693 (968)
T ss_pred --------------------------------------------------cc----------------------------
Confidence 00
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEEE
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILV 1086 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rILV 1086 (1223)
..+ | ....+.+|||
T Consensus 694 --------~~~----------------------------~------------------------------~~~~~~~iLv 707 (968)
T TIGR02956 694 --------TLT----------------------------V------------------------------IDLPPQRVLL 707 (968)
T ss_pred --------ccc----------------------------c------------------------------ccccccceEE
Confidence 000 0 0011237999
Q ss_pred EecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCccc
Q 000920 1087 VDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSA 1166 (1223)
Q Consensus 1087 VDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~ 1166 (1223)
||||+.++..+..+|+..|+.|.++.+|.+|++.+.. ..||+||||++||+|||+++++.||+..+.
T Consensus 708 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~dlvl~D~~mp~~~g~~~~~~ir~~~~~------------ 774 (968)
T TIGR02956 708 VEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ-HAFDLALLDINLPDGDGVTLLQQLRAIYGA------------ 774 (968)
T ss_pred EcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC-CCCCEEEECCCCCCCCHHHHHHHHHhCccc------------
Confidence 9999999999999999999999999999999999874 689999999999999999999999975321
Q ss_pred ccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1167 EMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1167 ~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..++|||++|++...+...+|+++||++|+.||++.++|...|.+++.
T Consensus 775 -------~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 775 -------KNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred -------cCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 112899999999999999999999999999999999999999998874
|
This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). |
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=544.99 Aligned_cols=370 Identities=34% Similarity=0.556 Sum_probs=320.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000920 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691 (1223)
Q Consensus 612 k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~ 691 (1223)
.++++++.++|++|+++|||||||||++|.|+++++.++..+++++++++.+..+++++..+|++++++++++++++.++
T Consensus 273 e~~l~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~ 352 (779)
T PRK11091 273 QDALEKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLD 352 (779)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEE
Confidence 34455666788999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred eeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccc
Q 000920 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771 (1223)
Q Consensus 692 ~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~ 771 (1223)
..++++.++++++...+...+..+++.+.+......|..+.+|+.+|+||+.||++||+||+ ++|.|.|.+.....
T Consensus 353 ~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~-~~g~v~i~~~~~~~--- 428 (779)
T PRK11091 353 NQPIDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFT-QQGGVTVRVRYEEG--- 428 (779)
T ss_pred eeccCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhC-CCCcEEEEEEEccC---
Confidence 99999999999999999999999999999998888888899999999999999999999999 46778777653211
Q ss_pred cccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcC
Q 000920 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851 (1223)
Q Consensus 772 ~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFe 851 (1223)
..+.|+|.|||+|||++.+++||+
T Consensus 429 --------------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~iF~ 452 (779)
T PRK11091 429 --------------------------------------------------------DMLTFEVEDSGIGIPEDELDKIFA 452 (779)
T ss_pred --------------------------------------------------------CEEEEEEEecCCCCCHHHHHHHHH
Confidence 147899999999999999999999
Q ss_pred CCccc-CCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCcccccCcEE
Q 000920 852 PFMQA-DSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRA 930 (1223)
Q Consensus 852 pF~q~-d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~~~~~g~rv 930 (1223)
|||++ +.+.++..+|+||||+|||++|+.|||+|+++|.+|+||+|+|++|+.........
T Consensus 453 ~f~~~~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~------------------ 514 (779)
T PRK11091 453 MYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVED------------------ 514 (779)
T ss_pred HhhcccCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEEEecccccccccc------------------
Confidence 99999 56666668999999999999999999999999999999999999997432110000
Q ss_pred EEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcCCc
Q 000920 931 LVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGL 1010 (1223)
Q Consensus 931 LvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1223)
+
T Consensus 515 ----------------------------------------------~--------------------------------- 515 (779)
T PRK11091 515 ----------------------------------------------A--------------------------------- 515 (779)
T ss_pred ----------------------------------------------c---------------------------------
Confidence 0
Q ss_pred ccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEEEEecC
Q 000920 1011 EISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDN 1090 (1223)
Q Consensus 1011 ~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rILVVDDn 1090 (1223)
..+ .+ ....+.+|||||||
T Consensus 516 ----~~~---------------------------~~------------------------------~~~~~~~ILivdD~ 534 (779)
T PRK11091 516 ----FDE---------------------------DD------------------------------MPLPALNILLVEDI 534 (779)
T ss_pred ----ccc---------------------------cc------------------------------ccccccceEEEcCC
Confidence 000 00 00123479999999
Q ss_pred hhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCccccccc
Q 000920 1091 MVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFG 1170 (1223)
Q Consensus 1091 ~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~ 1170 (1223)
+.++..+..+|+..|+.+..+.+|.+|++.+. .+.||+||||++||+|||++++++||+..+
T Consensus 535 ~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~-~~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~----------------- 596 (779)
T PRK11091 535 ELNVIVARSVLEKLGNSVDVAMTGKEALEMFD-PDEYDLVLLDIQLPDMTGLDIARELRERYP----------------- 596 (779)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEcCCCCCCCHHHHHHHHHhccc-----------------
Confidence 99999999999999999999999999999887 467999999999999999999999996431
Q ss_pred CCCCCc-ccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1171 NVGLWH-VPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1171 ~~~~~~-iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+ +|||++|++... ...+|+++||++||.||++.++|...+.+++.
T Consensus 597 ---~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 644 (779)
T PRK11091 597 ---REDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWD 644 (779)
T ss_pred ---cCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhc
Confidence 123 499999998765 46889999999999999999999999999874
|
|
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=534.17 Aligned_cols=371 Identities=34% Similarity=0.557 Sum_probs=323.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000920 605 YHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIE 684 (1223)
Q Consensus 605 ~~el~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKie 684 (1223)
..+..+.+.+++++.++|++|+++|||||||||++|.|++++|.+...++.++++++.+..++++|..+|++++++++++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~ 506 (914)
T PRK11466 427 VIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIE 506 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566777888899999999999999999999999999999888889999999999999999999999999999999
Q ss_pred cCC--CCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEE
Q 000920 685 SGR--LEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVS 762 (1223)
Q Consensus 685 sgk--l~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~ 762 (1223)
.|. +.++..+|++.+++++++..+...+..+++.+.+++++..|..+.+|+.+|+||+.||++||+|||+ +|.|.|.
T Consensus 507 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~-~g~I~i~ 585 (914)
T PRK11466 507 AGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTD-EGSIVLR 585 (914)
T ss_pred CCCCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCC-CCeEEEE
Confidence 884 5667789999999999999999999999999999998888888999999999999999999999994 6888887
Q ss_pred EEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCC
Q 000920 763 VHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIP 842 (1223)
Q Consensus 763 v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~ 842 (1223)
+...+. .+.|+|+|||+|||
T Consensus 586 ~~~~~~------------------------------------------------------------~~~i~V~D~G~Gi~ 605 (914)
T PRK11466 586 SRTDGE------------------------------------------------------------QWLVEVEDSGCGID 605 (914)
T ss_pred EEEcCC------------------------------------------------------------EEEEEEEECCCCCC
Confidence 653211 47899999999999
Q ss_pred HHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCc
Q 000920 843 LEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDV 922 (1223)
Q Consensus 843 ~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~ 922 (1223)
++.++++|+||++.+. ..+|+||||+||+++++.|||+|.+.|.+|+||+|+|.+|+.......
T Consensus 606 ~~~~~~if~~f~~~~~----~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~------------ 669 (914)
T PRK11466 606 PAKLAEIFQPFVQVSG----KRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPV------------ 669 (914)
T ss_pred HHHHHHHhchhhcCCC----CCCCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEcccccccc------------
Confidence 9999999999997642 347999999999999999999999999999999999999974311000
Q ss_pred ccccCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHH
Q 000920 923 SEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLK 1002 (1223)
Q Consensus 923 ~~~~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~ 1002 (1223)
+.
T Consensus 670 ------------------------------------------------------~~------------------------ 671 (914)
T PRK11466 670 ------------------------------------------------------PK------------------------ 671 (914)
T ss_pred ------------------------------------------------------cc------------------------
Confidence 00
Q ss_pred HHHhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCc
Q 000920 1003 QQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGK 1082 (1223)
Q Consensus 1003 ~~~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1082 (1223)
.. .. | ....++
T Consensus 672 ------~~----~~-----------------------------~------------------------------~~~~~~ 682 (914)
T PRK11466 672 ------TV----NQ-----------------------------A------------------------------VRLDGL 682 (914)
T ss_pred ------cc----cc-----------------------------c------------------------------cccCCc
Confidence 00 00 0 001235
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+|||||||+.++..+..+|+..|+.|.++.+|.+|++.+...+.||+||||++||+|||++++++||+..
T Consensus 683 ~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~lr~~~---------- 752 (914)
T PRK11466 683 RLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQY---------- 752 (914)
T ss_pred ceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHHHhhC----------
Confidence 7999999999999999999999999999999999999875445799999999999999999999999632
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+...+++++|+++||.||++.++|...|.+++.
T Consensus 753 ------------~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 753 ------------PSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred ------------CCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 35899999999999999999999999999999999999999998864
|
|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=505.78 Aligned_cols=382 Identities=30% Similarity=0.479 Sum_probs=315.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 000920 602 ENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQ-LDYAQTAHNSGKDLISLINDVLDQ 680 (1223)
Q Consensus 602 e~~~~el~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q-~~~l~~i~~s~~~Ll~LIndlLD~ 680 (1223)
++..+++++.+.+++++..++++|+++|||||||||++|.|++++|.+...+.++ .+++..+..++++|..+|++++++
T Consensus 692 ~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~ 771 (1197)
T PRK09959 692 RDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDV 771 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666777788999999999999999999999999999766555554 478889999999999999999999
Q ss_pred HHHhcCCCCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEE
Q 000920 681 AKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIF 760 (1223)
Q Consensus 681 sKiesgkl~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~ 760 (1223)
++++++...+...++++.+++++++..+...+..+++.+.+......+..+.+|+.+|+||+.||++||+||++ +|.+.
T Consensus 772 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~-~g~i~ 850 (1197)
T PRK09959 772 DKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTT-EGAVK 850 (1197)
T ss_pred HHhhcCCceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCC-CCCEE
Confidence 99999999999999999999999999999999999999887654333446889999999999999999999995 56666
Q ss_pred EEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCC
Q 000920 761 VSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840 (1223)
Q Consensus 761 V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiG 840 (1223)
+.+..... ..+...+.|+|+|||+|
T Consensus 851 i~~~~~~~-------------------------------------------------------~~~~~~~~i~V~D~G~G 875 (1197)
T PRK09959 851 ITTSLGHI-------------------------------------------------------DDNHAVIKMTIMDSGSG 875 (1197)
T ss_pred EEEEEeee-------------------------------------------------------cCCceEEEEEEEEcCCC
Confidence 65542110 00112578999999999
Q ss_pred CCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccC
Q 000920 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVP 920 (1223)
Q Consensus 841 I~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~ 920 (1223)
||++.+++||+||++.+. .+..+|+||||+|||++++.|||+|+++|.+|+||+|++++|+........
T Consensus 876 i~~~~~~~iF~~f~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~--------- 944 (1197)
T PRK09959 876 LSQEEQQQLFKRYSQTSA--GRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVAT--------- 944 (1197)
T ss_pred CCHHHHHHhhcccccccc--CCCCCCcCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhcc---------
Confidence 999999999999998654 234579999999999999999999999999999999999999742110000
Q ss_pred CcccccCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHH
Q 000920 921 DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYM 1000 (1223)
Q Consensus 921 ~~~~~~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~ 1000 (1223)
.. .
T Consensus 945 -------------------------------------------------~~-----~----------------------- 947 (1197)
T PRK09959 945 -------------------------------------------------VE-----A----------------------- 947 (1197)
T ss_pred -------------------------------------------------cc-----c-----------------------
Confidence 00 0
Q ss_pred HHHHHhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCC
Q 000920 1001 LKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLK 1080 (1223)
Q Consensus 1001 ~~~~~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1223)
.. .. |. ....
T Consensus 948 --------~~----~~-----------------------------~~-----------------------------~~~~ 957 (1197)
T PRK09959 948 --------KA----EQ-----------------------------PI-----------------------------TLPE 957 (1197)
T ss_pred --------cc----cc-----------------------------cc-----------------------------cccc
Confidence 00 00 00 0011
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
..+||||||++.++..+..+|+..|+.+..+.+|.+|++.+. .+.||+||+|++||+|||+++++.||+..
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~i~~~~-------- 1028 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVS-MQHYDLLITDVNMPNMDGFELTRKLREQN-------- 1028 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEeCCCCCCCHHHHHHHHHhcC--------
Confidence 247999999999999999999999999999999999999886 46799999999999999999999999632
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
.++|||++|+....+...+|+++||+|||.||++.++|...|.++.
T Consensus 1029 --------------~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 1074 (1197)
T PRK09959 1029 --------------SSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLH 1074 (1197)
T ss_pred --------------CCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Confidence 2579999999999999999999999999999999999999998764
|
|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-44 Score=454.08 Aligned_cols=240 Identities=21% Similarity=0.371 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000920 606 HEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIES 685 (1223)
Q Consensus 606 ~el~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKies 685 (1223)
+++++++++++++.++|++|+++|||||||||++|.|+++++.+...+++++++++.+..++++|..+|+++++++|+++
T Consensus 434 ~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~ 513 (894)
T PRK10618 434 KKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLET 513 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35666777788889999999999999999999999999999988778888999999999999999999999999999999
Q ss_pred CCCCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEE
Q 000920 686 GRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL 765 (1223)
Q Consensus 686 gkl~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~ 765 (1223)
|+..++..+|++.+++++++..+...++++++.+.+.++...+..+.+|+.+|+||+.||++||+|||+ +|.|.|.+..
T Consensus 514 ~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~-~G~I~I~v~~ 592 (894)
T PRK10618 514 QDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTA-YGKITLEVDQ 592 (894)
T ss_pred CCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCC-CCeEEEEEEE
Confidence 999999999999999999999999999999999998887666777899999999999999999999994 6888887754
Q ss_pred ccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHh
Q 000920 766 ADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845 (1223)
Q Consensus 766 ~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~ 845 (1223)
... ....+.|+|.|||+|||++.
T Consensus 593 ~~~---------------------------------------------------------~~~~l~I~V~DtG~GI~~e~ 615 (894)
T PRK10618 593 DES---------------------------------------------------------SPDRLTIRILDTGAGVSIKE 615 (894)
T ss_pred ccC---------------------------------------------------------CCcEEEEEEEECCCCCCHHH
Confidence 321 01258899999999999999
Q ss_pred HhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEec
Q 000920 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 846 ~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
+++||+||++.+.. .+.++|+||||+|||+||+.|||+|+++|.+|+||+|+|++|+.
T Consensus 616 l~~IFePF~t~~~~-~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~ 673 (894)
T PRK10618 616 LDNLHFPFLNQTQG-DRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKML 673 (894)
T ss_pred HHHhcCccccCCCC-CCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEcc
Confidence 99999999986543 44567999999999999999999999999999999999999974
|
|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=446.24 Aligned_cols=364 Identities=21% Similarity=0.280 Sum_probs=293.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHH
Q 000920 620 VAKSQFLATVSHEIRTPMNGVLGMLQMLMDT-ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLH 698 (1223)
Q Consensus 620 ~aKs~FLA~vSHELRTPLn~IlG~lelL~~~-~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~ 698 (1223)
.+.++|++++||||||||++|.|+++++.+. .......++++.+..+++++..+|++++++++...+ ...++++.
T Consensus 448 ~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~----~~~~~~l~ 523 (828)
T PRK13837 448 EAVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGER----NTKPFDLS 523 (828)
T ss_pred HHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCcEEcHH
Confidence 3567999999999999999999999987653 345567789999999999999999999999986543 45689999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhh
Q 000920 699 DVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778 (1223)
Q Consensus 699 ~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~ 778 (1223)
+++++++..+... ..+++.+.+..++. +..+.+|+.+|.||+.||++||+||++++|.|.|++..........
T Consensus 524 ~ll~~~~~~~~~~-~~~~i~l~~~~~~~-~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~----- 596 (828)
T PRK13837 524 ELVTEIAPLLRVS-LPPGVELDFDQDQE-PAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKV----- 596 (828)
T ss_pred HHHHHHHHHHHHH-ccCCcEEEEEeCCC-CceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccc-----
Confidence 9999999988754 45788888877654 3468899999999999999999999988899988886532110000
Q ss_pred hhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCC
Q 000920 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858 (1223)
Q Consensus 779 ~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~ 858 (1223)
+ ......+...+.|+|+|+|+|||++.++++|+||++.+.
T Consensus 597 -------------------~---------------------~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~ 636 (828)
T PRK13837 597 -------------------L---------------------SHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA 636 (828)
T ss_pred -------------------c---------------------ccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC
Confidence 0 000001123688999999999999999999999995432
Q ss_pred CCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCcccccCcEEEEecChhh
Q 000920 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSI 938 (1223)
Q Consensus 859 stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~~~~~g~rvLvVDd~~~ 938 (1223)
+|+||||+||+++++.|||+|+++|.+|+||+|+|++|..........
T Consensus 637 ------~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~-------------------------- 684 (828)
T PRK13837 637 ------GGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQ-------------------------- 684 (828)
T ss_pred ------CCCcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCcc--------------------------
Confidence 799999999999999999999999999999999999997431100000
Q ss_pred hHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcCCcccccCCCe
Q 000920 939 RAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPK 1018 (1223)
Q Consensus 939 ~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 1018 (1223)
. . ..
T Consensus 685 ---------------------------------------~------------------------------~-----~~-- 688 (828)
T PRK13837 685 ---------------------------------------A------------------------------F-----FG-- 688 (828)
T ss_pred ---------------------------------------c------------------------------c-----CC--
Confidence 0 0 00
Q ss_pred EEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEEEEecChhHHHHHH
Q 000920 1019 IFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAE 1098 (1223)
Q Consensus 1019 i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rILVVDDn~~n~~vl~ 1098 (1223)
| ...+...+.+|||||||+.++..+.
T Consensus 689 ---------------------------~---------------------------~~~~~~~~~~ILvVddd~~~~~~l~ 714 (828)
T PRK13837 689 ---------------------------P---------------------------GPLPRGRGETVLLVEPDDATLERYE 714 (828)
T ss_pred ---------------------------C---------------------------cccCCCCCCEEEEEcCCHHHHHHHH
Confidence 0 0000013458999999999999999
Q ss_pred HHHhhCCCEEEEECCHHHHHHHhCCC-CCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcc
Q 000920 1099 GALKKHGAIVTCVDCGRAAVDKLTPP-HNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHV 1177 (1223)
Q Consensus 1099 ~~L~~~G~~V~~a~~G~eAl~~l~~~-~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~i 1177 (1223)
..|...||.+..+.++.+|++.+... ..||+||+ .||.|||+++++.|+... ..+
T Consensus 715 ~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~----------------------~~i 770 (828)
T PRK13837 715 EKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAA----------------------PTL 770 (828)
T ss_pred HHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhC----------------------CCC
Confidence 99999999999999999999988532 34899999 799999999999998532 358
Q ss_pred cEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1178 PILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1178 PIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
|||++|+....+...+++++| +|||.||++.++|..+|.+.+.
T Consensus 771 pIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~ 813 (828)
T PRK13837 771 PIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALA 813 (828)
T ss_pred CEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHc
Confidence 999999999999999999999 9999999999999999998875
|
|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=371.69 Aligned_cols=367 Identities=19% Similarity=0.243 Sum_probs=287.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeee
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDT-----ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPF 695 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~-----~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~f 695 (1223)
...++++.++||+||||+.|.|+++++... .......++++.+...++++..++++++++++.. .+....+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 346789999999999999999999987532 1234456788889999999999999999998743 3456778
Q ss_pred cHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccc
Q 000920 696 HLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDV 775 (1223)
Q Consensus 696 dL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~ 775 (1223)
++..+++.+...+.. ...+++.+.+.+.+..+. +.+|+.+++|++.||+.||+||++.+|.|.|.+.........
T Consensus 238 ~l~~~i~~~~~~~~~-~~~~~~~i~~~~~~~~~~-~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~--- 312 (540)
T PRK13557 238 NLNGLVSGMGELAER-TLGDAVTIETDLAPDLWN-CRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDED--- 312 (540)
T ss_pred CHHHHHHHHHHHHHH-hcCCCeEEEEecCCCCCc-eeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccc---
Confidence 999999988776543 345777887776665553 667999999999999999999998888877766432110000
Q ss_pred hhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcc
Q 000920 776 KDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQ 855 (1223)
Q Consensus 776 ~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q 855 (1223)
+..| ........+.|+|.|+|+|||++.+.++|+||++
T Consensus 313 -------------------------------~~~~-----------~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~ 350 (540)
T PRK13557 313 -------------------------------LAMY-----------HGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFT 350 (540)
T ss_pred -------------------------------cccc-----------cCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcc
Confidence 0000 0001122578999999999999999999999996
Q ss_pred cCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCCcCCCCCCcccccCCcccccCcEEEEecC
Q 000920 856 ADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDD 935 (1223)
Q Consensus 856 ~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~~~~~~~~~~~~~~~~~~~~g~rvLvVDd 935 (1223)
.+ ...+|+||||+|||.+++.|||+|+++|.+|+||+|+|++|........ +
T Consensus 351 ~~----~~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~---------~--------------- 402 (540)
T PRK13557 351 TK----EEGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENP---------E--------------- 402 (540)
T ss_pred cC----CCCCCCCccHHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCC---------C---------------
Confidence 43 3346999999999999999999999999999999999999964211000 0
Q ss_pred hhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcCCcccccC
Q 000920 936 KSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRN 1015 (1223)
Q Consensus 936 ~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1015 (1223)
.
T Consensus 403 -------------------------------------------------------------------------------~ 403 (540)
T PRK13557 403 -------------------------------------------------------------------------------Q 403 (540)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEEEEecChhHHH
Q 000920 1016 LPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRR 1095 (1223)
Q Consensus 1016 ~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rILVVDDn~~n~~ 1095 (1223)
.+. + .......+++||||||++..+.
T Consensus 404 ~~~---------------------------~---------------------------~~~~~~~~~~iliv~~~~~~~~ 429 (540)
T PRK13557 404 EPK---------------------------A---------------------------RAIDRGGTETILIVDDRPDVAE 429 (540)
T ss_pred CCC---------------------------C---------------------------cccccCCCceEEEEcCcHHHHH
Confidence 000 0 0000013458999999999999
Q ss_pred HHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCC-CCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCC
Q 000920 1096 VAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE-MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGL 1174 (1223)
Q Consensus 1096 vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~-MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~ 1174 (1223)
.+..+|+..|+.+..+.++.+|++.+.....||+|++|..||+ ++|+++++.||+..
T Consensus 430 ~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~~l~~~~---------------------- 487 (540)
T PRK13557 430 LARMILEDFGYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLAREARRRQ---------------------- 487 (540)
T ss_pred HHHHHHHhcCCeEEEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHHHHHHhC----------------------
Confidence 9999999999999999999999998854346999999999997 99999999998632
Q ss_pred CcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1175 WHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1175 ~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+.........++.+|+++|+.||++.++|...+.+.+.
T Consensus 488 ~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 488 PKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred CCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 25799999999888888889999999999999999999999998765
|
|
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=355.09 Aligned_cols=226 Identities=29% Similarity=0.519 Sum_probs=200.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecH
Q 000920 620 VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAA--QLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHL 697 (1223)
Q Consensus 620 ~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~--q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL 697 (1223)
+.+..|.|++||||||||+++.++++.|.+....+. ...++..-++..++|.+|+||+|.+||++.+...++.+.+|+
T Consensus 223 ~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~inf 302 (459)
T COG5002 223 RERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWINF 302 (459)
T ss_pred HHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHHHh
Confidence 346789999999999999999999999988765444 557888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchh
Q 000920 698 HDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777 (1223)
Q Consensus 698 ~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~ 777 (1223)
...+..+++.|....++..+..-+.--+..+.++..|+.++.||+.|+++||+||+|+||+|++.+...++
T Consensus 303 t~fl~~ii~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~--------- 373 (459)
T COG5002 303 TAFLNEIINRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQRET--------- 373 (459)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhcCCCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCc---------
Confidence 99999999999887555544311222244567888999999999999999999999999999998864221
Q ss_pred hhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccC
Q 000920 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD 857 (1223)
Q Consensus 778 ~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d 857 (1223)
.+.|+|.|.|.|||++.+++||++||+.|
T Consensus 374 ---------------------------------------------------~v~iSI~D~G~gIPk~d~~~iFdrfyRvd 402 (459)
T COG5002 374 ---------------------------------------------------WVEISISDQGLGIPKEDLEKIFDRFYRVD 402 (459)
T ss_pred ---------------------------------------------------EEEEEEccCCCCCCchhHHHHHHHHhhhh
Confidence 58899999999999999999999999999
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 858 SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 858 ~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
..++|+.|||||||+|+|.+|+.|||.||.+|..|+||+|+|+||...
T Consensus 403 kARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~ 450 (459)
T COG5002 403 KARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSG 450 (459)
T ss_pred hhhhhcCCCCchhHHHHHHHHHHhCCeEEEecccCCceEEEEEecccC
Confidence 999999999999999999999999999999999999999999999864
|
|
| >PRK09303 adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=347.81 Aligned_cols=246 Identities=28% Similarity=0.394 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHH
Q 000920 597 RIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD-------AAQLDYAQTAHNSGKD 669 (1223)
Q Consensus 597 ri~~ve~~~~el~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~-------~~q~~~l~~i~~s~~~ 669 (1223)
++.++.+...++.+.++++++..+++.+|++++||||||||++|.+++++|.+...+ +...++++.+..+...
T Consensus 126 ~~~~l~~~~~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (380)
T PRK09303 126 ELLQLSDELFVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEE 205 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHH
Confidence 334455555556666666667777899999999999999999999999999754322 3356788899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHH
Q 000920 670 LISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNS 749 (1223)
Q Consensus 670 Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNA 749 (1223)
+..+|++++++++.+.+...++..++|+.+++++++..+...+..+++.+.+.++...| .+.+|+.+|+||+.||++||
T Consensus 206 l~~li~~ll~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NA 284 (380)
T PRK09303 206 IERLITDLLEVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNA 284 (380)
T ss_pred HHHHHHHHHHHHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877766 57899999999999999999
Q ss_pred HhccCCCCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceE
Q 000920 750 IKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIK 829 (1223)
Q Consensus 750 IKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 829 (1223)
+||++++|.|.|.+....+ ..
T Consensus 285 ik~~~~~~~I~i~~~~~~~-----------------------------------------------------------~~ 305 (380)
T PRK09303 285 IKYTPEGGTITLSMLHRTT-----------------------------------------------------------QK 305 (380)
T ss_pred HhcCCCCceEEEEEEecCC-----------------------------------------------------------CE
Confidence 9999888888876632111 15
Q ss_pred EEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEec
Q 000920 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 830 l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
+.|+|.|+|+|||++.++++|+||++.+. .+..+|+||||+||+++++.|||+|+++|.+|+|++|+|++|+.
T Consensus 306 v~i~V~D~G~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 306 VQVSICDTGPGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQGSCFHFTLPVY 378 (380)
T ss_pred EEEEEEEcCCCCCHHHHHHHccCceeCCC--CCCCCcccccHHHHHHHHHHcCCEEEEEecCCCccEEEEEEecC
Confidence 78999999999999999999999998875 34567999999999999999999999999999999999999974
|
|
| >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=351.96 Aligned_cols=225 Identities=25% Similarity=0.487 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC--CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccee
Q 000920 617 AADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT--ELDAA-QLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFV 693 (1223)
Q Consensus 617 ~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~--~l~~~-q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~ 693 (1223)
+.++.++.|++++||||||||++|.|.++.|... .++++ +.+.+..|...+++|..+|+++||++|+++|.+++...
T Consensus 655 e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~~ 734 (890)
T COG2205 655 ERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKLD 734 (890)
T ss_pred HHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccc
Confidence 3456789999999999999999999999998754 45555 66899999999999999999999999999999999999
Q ss_pred eecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccc
Q 000920 694 PFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKV 773 (1223)
Q Consensus 694 ~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~ 773 (1223)
+..+.+++.+++........... +.+.+++++| .+..|+..|+|||.||+.||+||++++..|.|.+....+
T Consensus 735 ~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~~----- 806 (890)
T COG2205 735 WVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVERE----- 806 (890)
T ss_pred hhhHHHHHHHHHHHhhhhcCCce--EEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEecc-----
Confidence 99999999999987766654444 6666677766 688999999999999999999999999889988865432
Q ss_pred cchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCC
Q 000920 774 DVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853 (1223)
Q Consensus 774 ~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF 853 (1223)
.+.|+|.|+|+|||++++++||++|
T Consensus 807 -------------------------------------------------------~v~~~V~DeGpGIP~~~~~~IFD~F 831 (890)
T COG2205 807 -------------------------------------------------------NVVFSVIDEGPGIPEGELERIFDKF 831 (890)
T ss_pred -------------------------------------------------------eEEEEEEeCCCCCChhHHHHhhhhh
Confidence 5889999999999999999999999
Q ss_pred cccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccC
Q 000920 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906 (1223)
Q Consensus 854 ~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~ 906 (1223)
|+.+.... ..|+||||+||+.+|+.|||+|++.+.+++|++|+|+||....
T Consensus 832 ~r~~~~~~--~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 832 YRGNKESA--TRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred hcCCCCCC--CCCccccHHHHHHHHHHcCCeEEEEEcCCCceEEEEEeecCCC
Confidence 99887433 6799999999999999999999999999999999999998653
|
|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=326.86 Aligned_cols=221 Identities=28% Similarity=0.397 Sum_probs=192.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL-DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHD 699 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l-~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ 699 (1223)
++.+|++++||||||||++|.|+++++.+... ++...++++.+..++++|..++++++++++++.+.......++++..
T Consensus 203 ~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~ 282 (430)
T PRK11006 203 ARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPM 282 (430)
T ss_pred HHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHH
Confidence 45689999999999999999999999876543 45566789999999999999999999999999988777778899999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhh
Q 000920 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779 (1223)
Q Consensus 700 ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~ 779 (1223)
+++.+...+.... .+++.+.+.+++.. .+.+|+.+|+||+.||++||+||+++++.|.|++...++
T Consensus 283 ~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~----------- 348 (430)
T PRK11006 283 MLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPQ----------- 348 (430)
T ss_pred HHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCC-----------
Confidence 9988877766555 67788888776543 478999999999999999999999888888877643211
Q ss_pred hhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCC
Q 000920 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSS 859 (1223)
Q Consensus 780 l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~s 859 (1223)
.+.|+|+|+|+|||++.++++|+|||+.+.+
T Consensus 349 -------------------------------------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~ 379 (430)
T PRK11006 349 -------------------------------------------------GAEFSVEDNGPGIAPEHIPRLTERFYRVDKA 379 (430)
T ss_pred -------------------------------------------------EEEEEEEEcCCCCCHHHHHHhccCcccccCC
Confidence 4789999999999999999999999999887
Q ss_pred CCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEec
Q 000920 860 TSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 860 tsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
.++..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|..
T Consensus 380 ~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~~~~Gt~f~i~lP~~ 424 (430)
T PRK11006 380 RSRQTGGSGLGLAIVKHALSHHDSRLEIESEVGKGTRFSFVLPER 424 (430)
T ss_pred CCCCCCCCchHHHHHHHHHHHCCCEEEEEecCCCceEEEEEechH
Confidence 777788999999999999999999999999999999999999964
|
|
| >PRK10604 sensor protein RstB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=312.23 Aligned_cols=224 Identities=26% Similarity=0.388 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000920 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691 (1223)
Q Consensus 612 k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~ 691 (1223)
..+.++....+.+|++++||||||||+.|.+.++++.+. +..+.+ .+.+..+++..++++++.+++++.+...+.
T Consensus 202 ~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~--~~~~~~---~i~~~~~~l~~li~~ll~~~rl~~~~~~~~ 276 (433)
T PRK10604 202 ADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNL--SAAESQ---ALNRDIGQLEALIEELLTYARLDRPQNELH 276 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCC--CcHHHH---HHHHHHHHHHHHHHHHHHHHhccCCCcccC
Confidence 344455556778999999999999999999999988632 222222 367788899999999999999999998889
Q ss_pred eeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccc
Q 000920 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771 (1223)
Q Consensus 692 ~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~ 771 (1223)
..++++.+++++++..+......+++++.+... +..+.+|+..+.+|+.||++||+||+ +|.|.|++...++
T Consensus 277 ~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~~~~---~~~~~~d~~~l~~vl~NLl~NAik~~--~~~I~I~~~~~~~--- 348 (433)
T PRK10604 277 LSEPDLPAWLSTHLADIQAVTPEKTVRLDTPHQ---GDYGALDMRLMERVLDNLLNNALRYA--HSRVRVSLLLDGN--- 348 (433)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcCcEEEEecCC---CceEecCHHHHHHHHHHHHHHHHHhC--CCeEEEEEEEECC---
Confidence 999999999999999998888777777765322 33566899999999999999999998 4677777754321
Q ss_pred cccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcC
Q 000920 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851 (1223)
Q Consensus 772 ~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFe 851 (1223)
.+.|+|+|+|+|||++.++++|+
T Consensus 349 ---------------------------------------------------------~~~I~V~D~G~Gi~~e~~~~if~ 371 (433)
T PRK10604 349 ---------------------------------------------------------QACLIVEDDGPGIPPEERERVFE 371 (433)
T ss_pred ---------------------------------------------------------EEEEEEEEcCCCCCHHHHhhcCC
Confidence 47899999999999999999999
Q ss_pred CCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 852 pF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
||++.+.+++++.+|+||||+|||++++.|||+|.++|.+++|++|++++|...
T Consensus 372 ~f~r~~~~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 372 PFVRLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVWH 425 (433)
T ss_pred CCccCCCCCCCCCCCccchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeCCC
Confidence 999999887777789999999999999999999999999999999999999764
|
|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=311.59 Aligned_cols=214 Identities=23% Similarity=0.401 Sum_probs=169.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeec
Q 000920 620 VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD---AAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFH 696 (1223)
Q Consensus 620 ~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~---~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fd 696 (1223)
....++++.++|||||||++|.|+++++.....+ ......+..+...+..++..++++++ ........++|
T Consensus 274 ~~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~d 347 (494)
T TIGR02938 274 EAIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIP------QSPQEIVVPVN 347 (494)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhc------cCccccccccc
Confidence 3446788889999999999999999998764333 33334444444444444444444433 23344567899
Q ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCC----eEEEEEEEccCcccc
Q 000920 697 LHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKG----HIFVSVHLADDVRSK 772 (1223)
Q Consensus 697 L~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G----~I~V~v~~~~~~~~~ 772 (1223)
+.+++++++..+...+..+++.+.+..++..| .+.+|+.+|+|||.||++||+||++.+| .|.|.+...
T Consensus 348 l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~------ 420 (494)
T TIGR02938 348 LNQILRDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTALN------ 420 (494)
T ss_pred HHHHHHHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEEec------
Confidence 99999999999999999999999998877666 5779999999999999999999997664 243333211
Q ss_pred ccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCC
Q 000920 773 VDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTP 852 (1223)
Q Consensus 773 ~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFep 852 (1223)
...+.|+|+|||+|||++.+.+||+|
T Consensus 421 ------------------------------------------------------~~~~~~~V~D~G~Gi~~~~~~~iF~~ 446 (494)
T TIGR02938 421 ------------------------------------------------------GDLIVVSILDSGPGIPQDLRYKVFEP 446 (494)
T ss_pred ------------------------------------------------------CCEEEEEEEeCCCCCCHHHHHHhcCC
Confidence 11578999999999999999999999
Q ss_pred CcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 000920 853 FMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903 (1223)
Q Consensus 853 F~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl 903 (1223)
|++.+... ++||||||+|||.||+.|||+|+++|.+|+||+|+|+||+
T Consensus 447 f~~~~~~~---~~G~GlGL~i~~~iv~~~gG~i~~~s~~~~G~~f~i~lp~ 494 (494)
T TIGR02938 447 FFTTKGGS---RKHIGMGLSVAQEIVADHGGIIDLDDDYSEGCRIIVEFRV 494 (494)
T ss_pred CcccCCCC---CCCCcccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEecC
Confidence 99876432 6799999999999999999999999999999999999995
|
NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes. |
| >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-30 Score=305.79 Aligned_cols=232 Identities=26% Similarity=0.448 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000920 611 LKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEP 690 (1223)
Q Consensus 611 ~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l 690 (1223)
+..+.+.....+.+|++.+|||+||||+.+.+.++.+.+... ....+.+..+.....++..++++++++++.+.+...+
T Consensus 229 m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~-~~~~~~l~~~~~~~~~l~~li~~l~~l~~~~~~~~~~ 307 (466)
T PRK10549 229 LASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVR-KFTPESVASLQAEVGTLTKLVDDLHQLSLSDEGALAY 307 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 344455556677899999999999999999999999876432 2234556778888899999999999999999999999
Q ss_pred ceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCcc
Q 000920 691 EFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770 (1223)
Q Consensus 691 ~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~ 770 (1223)
...++++.+++++++..+......+++++.+.+++.. .+.+|+.++.|++.||++||+||++++|.|.|.+...++
T Consensus 308 ~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~~~~-- 383 (466)
T PRK10549 308 RKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQRDK-- 383 (466)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCC--
Confidence 9999999999999999999999999999998876543 466999999999999999999999888898887754321
Q ss_pred ccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhc
Q 000920 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF 850 (1223)
Q Consensus 771 ~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLF 850 (1223)
.+.|+|+|+|+|||++.++++|
T Consensus 384 ----------------------------------------------------------~~~i~V~D~G~Gi~~e~~~~lf 405 (466)
T PRK10549 384 ----------------------------------------------------------TLRLTFADSAPGVSDEQLQKLF 405 (466)
T ss_pred ----------------------------------------------------------EEEEEEEecCCCcCHHHHHHhc
Confidence 5789999999999999999999
Q ss_pred CCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 851 epF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
+||++.+.+..+..+|+||||+||+++++.|||++.++|.+++|++|+|.+|+..
T Consensus 406 ~~~~~~~~~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 406 ERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLER 460 (466)
T ss_pred cCcccCCCCcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccCCC
Confidence 9999998776677789999999999999999999999999999999999999754
|
|
| >PRK10815 sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=307.25 Aligned_cols=218 Identities=22% Similarity=0.321 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeee
Q 000920 617 AADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE-LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPF 695 (1223)
Q Consensus 617 ~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~-l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~f 695 (1223)
+......+|++++||||||||+.|.++++.|.+.. .+.+ +....+.+...++..+|+++++.++.+++...+....+
T Consensus 261 ~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~~~--~~~~~~~~~i~ri~~~i~~ll~~~~~~~~~~~~~~~~~ 338 (485)
T PRK10815 261 ERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMSVE--QAEPIMLEQISRISQQIGYYLHRASMRSEHNLLSRELH 338 (485)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccee
Confidence 33445578999999999999999999999987654 3332 23345667788999999999999999999888888999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccc
Q 000920 696 HLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDV 775 (1223)
Q Consensus 696 dL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~ 775 (1223)
++..++++++..+...+..+++.+.+.+++.. .+.+|+..|.||+.||++||+||+++ .|.|++...+
T Consensus 339 ~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~--~i~I~~~~~~-------- 406 (485)
T PRK10815 339 SVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE--FVEISARQTD-------- 406 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC--cEEEEEEEeC--------
Confidence 99999999999999999999999998876543 46799999999999999999999954 3555543221
Q ss_pred hhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcc
Q 000920 776 KDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQ 855 (1223)
Q Consensus 776 ~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q 855 (1223)
..+.|+|+|+|+|||++.++++|+||++
T Consensus 407 ----------------------------------------------------~~v~I~V~D~G~GI~~e~~~~iF~~f~~ 434 (485)
T PRK10815 407 ----------------------------------------------------EHLHIVVEDDGPGIPESKRELIFDRGQR 434 (485)
T ss_pred ----------------------------------------------------CEEEEEEEECCCCcCHHHHHHHhCCccc
Confidence 1578999999999999999999999998
Q ss_pred cCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEec
Q 000920 856 ADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 856 ~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
.+.. .+|+||||+||+++++.|||+|.++|.+++||+|++++|..
T Consensus 435 ~~~~----~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 435 ADTL----RPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIFGRQ 479 (485)
T ss_pred CCCC----CCCcchhHHHHHHHHHHcCCEEEEEECCCCEEEEEEEEcCC
Confidence 6543 25999999999999999999999999999999999999864
|
|
| >PRK10364 sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=302.20 Aligned_cols=215 Identities=28% Similarity=0.488 Sum_probs=187.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHH
Q 000920 620 VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE-LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLH 698 (1223)
Q Consensus 620 ~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~-l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~ 698 (1223)
.+..+|.+++|||+||||++|.|+++++.+.. ...+..++++.+....+++..++++++++++.. ..+..++++.
T Consensus 235 ~~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~ 310 (457)
T PRK10364 235 VALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLN 310 (457)
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHH
Confidence 34568999999999999999999999987643 345666788889999999999999999998843 3556789999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhh
Q 000920 699 DVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778 (1223)
Q Consensus 699 ~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~ 778 (1223)
+++++++..+...++++++.+.+..++..+ .+.+|+.+|.|++.||++||+||+..++.|.|.+...++
T Consensus 311 ~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~---------- 379 (457)
T PRK10364 311 DLINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESGA---------- 379 (457)
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCC----------
Confidence 999999999999999999999998876554 467899999999999999999999778888887754321
Q ss_pred hhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCC
Q 000920 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858 (1223)
Q Consensus 779 ~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~ 858 (1223)
.+.|+|+|+|+|||++.++++|+||++.+
T Consensus 380 --------------------------------------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~k- 408 (457)
T PRK10364 380 --------------------------------------------------GVKISVTDSGKGIAADQLEAIFTPYFTTK- 408 (457)
T ss_pred --------------------------------------------------eEEEEEEECCCCCCHHHHHHHhCccccCC-
Confidence 47899999999999999999999998432
Q ss_pred CCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 859 stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
.+|+||||+|||++++.|||+|+++|.+|+||+|++++|...
T Consensus 409 -----~~g~GlGL~iv~~~v~~~gG~i~i~s~~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 409 -----AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPVNI 450 (457)
T ss_pred -----CCCCcccHHHHHHHHHHCCCEEEEEeCCCCcEEEEEEecCCC
Confidence 368999999999999999999999999999999999999853
|
|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=323.36 Aligned_cols=223 Identities=25% Similarity=0.449 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeee
Q 000920 618 ADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTE--LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPF 695 (1223)
Q Consensus 618 a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~--l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~f 695 (1223)
.++.+++|++.+||||||||++|.|+++++.... ......++++.+.....++..+|+++++++++++|.+.++..++
T Consensus 660 ~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~~ 739 (895)
T PRK10490 660 REQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEWL 739 (895)
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccc
Confidence 3456789999999999999999999999876432 22334466788889999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccc
Q 000920 696 HLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDV 775 (1223)
Q Consensus 696 dL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~ 775 (1223)
++.+++++++..+......+++.+. +++..| .+.+|+.+|.||+.||++||+||+++++.|.|++...++
T Consensus 740 ~L~eli~~~l~~l~~~~~~~~i~l~--~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~~~------- 809 (895)
T PRK10490 740 TLEEVVGSALQMLEPGLSGHPINLS--LPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGE------- 809 (895)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEE--cCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEeCC-------
Confidence 9999999999999888777766654 445444 578999999999999999999999888888887653221
Q ss_pred hhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcc
Q 000920 776 KDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQ 855 (1223)
Q Consensus 776 ~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q 855 (1223)
.+.|+|.|+|+|||++.+++||+||++
T Consensus 810 -----------------------------------------------------~v~I~V~D~G~GI~~e~~~~IFepF~~ 836 (895)
T PRK10490 810 -----------------------------------------------------RLQLDVWDNGPGIPPGQEQLIFDKFAR 836 (895)
T ss_pred -----------------------------------------------------EEEEEEEECCCCCCHHHHHHhcCCCcc
Confidence 478999999999999999999999998
Q ss_pred cCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 856 ADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 856 ~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
.+.. +..+|+||||+|||++++.|||+|+++|.+|+||+|+|++|+..
T Consensus 837 ~~~~--~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 837 GNKE--SAIPGVGLGLAICRAIVEVHGGTIWAENRPEGGACFRVTLPLET 884 (895)
T ss_pred CCCC--CCCCCccHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeECCC
Confidence 6643 33469999999999999999999999999999999999999853
|
|
| >PRK10755 sensor protein BasS/PmrB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=286.26 Aligned_cols=223 Identities=23% Similarity=0.319 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000920 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691 (1223)
Q Consensus 612 k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~ 691 (1223)
..+.+...+.+.+|++++||||||||++|.+.++++.+... .. ...+.....++..++++++++++.+.......
T Consensus 127 ~~~l~~~~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~~----~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~ 201 (356)
T PRK10755 127 VSRLTSTLDQERLFTADVAHELRTPLAGIRLHLELLEKQHH-ID----VAPLIARLDQMMHTVEQLLQLARAGQSFSSGH 201 (356)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc-hh----HHHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 33444444556689999999999999999999998764322 11 23344566789999999999999887666666
Q ss_pred eeeecH-HHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCcc
Q 000920 692 FVPFHL-HDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770 (1223)
Q Consensus 692 ~~~fdL-~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~ 770 (1223)
..++++ .+++..+...+......+++.+.+...+ .+..+.+|+..+++|+.||++||+||+++++.|.|.+...++
T Consensus 202 ~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~-- 278 (356)
T PRK10755 202 YQTVKLLEDVILPSQDELSEMLEQRQQTLLLPESA-ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQEDG-- 278 (356)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhCCeEEeccCC-CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEcCC--
Confidence 677888 8999999888988888898888774222 344678999999999999999999999878888887743221
Q ss_pred ccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhc
Q 000920 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF 850 (1223)
Q Consensus 771 ~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLF 850 (1223)
.+.|+|+|+|+||+++..+++|
T Consensus 279 ----------------------------------------------------------~~~i~V~D~G~Gi~~~~~~~if 300 (356)
T PRK10755 279 ----------------------------------------------------------GAVLAVEDEGPGIDESKCGELS 300 (356)
T ss_pred ----------------------------------------------------------EEEEEEEECCCCCCHHHHHHhC
Confidence 4789999999999999999999
Q ss_pred CCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCC-CeEEEEEEEEec
Q 000920 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG-TGSTFSFTVTFT 904 (1223)
Q Consensus 851 epF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g-~GStF~f~Lpl~ 904 (1223)
+||++.+. ..+|+||||+||+++++.|||+|+++|.++ +||+|++.+|..
T Consensus 301 ~~f~~~~~----~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~ 351 (356)
T PRK10755 301 KAFVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLPKA 351 (356)
T ss_pred CCeEeCCC----CCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEecCC
Confidence 99997653 346999999999999999999999999998 999999999864
|
|
| >TIGR01386 cztS_silS_copS heavy metal sensor kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=292.28 Aligned_cols=225 Identities=31% Similarity=0.490 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000920 613 ARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD-AAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691 (1223)
Q Consensus 613 ~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~-~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~ 691 (1223)
.+.++......+|.+++||||||||+.+.+.++.+.....+ .+..++++.+.....++..++++++++++++.+.....
T Consensus 232 ~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 311 (457)
T TIGR01386 232 GRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARADNGQLALE 311 (457)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 34444445567899999999999999999999987654433 34456777778888999999999999999999988888
Q ss_pred eeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccc
Q 000920 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771 (1223)
Q Consensus 692 ~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~ 771 (1223)
..++++.+++++++..+...+.++++++.+..+ ..+.+|+..|.+++.||+.||+||++++|.|.|++...++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~~~~~--- 384 (457)
T TIGR01386 312 RVRLDLAAELAKVAEYFEPLAEERGVRIRVEGE----GLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIERRSD--- 384 (457)
T ss_pred ccccCHHHHHHHHHHHHHHHHHhCCeEEEecCC----ceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEEecCC---
Confidence 899999999999999999989999988766432 4578999999999999999999999888888887753221
Q ss_pred cccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcC
Q 000920 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851 (1223)
Q Consensus 772 ~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFe 851 (1223)
.+.|+|+|+|+|||++.+.++|+
T Consensus 385 ---------------------------------------------------------~~~i~v~D~G~g~~~~~~~~~~~ 407 (457)
T TIGR01386 385 ---------------------------------------------------------EVRVSVSNPGPGIPPEHLSRLFD 407 (457)
T ss_pred ---------------------------------------------------------EEEEEEEeCCCCCCHHHHHHhcc
Confidence 47899999999999999999999
Q ss_pred CCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEE
Q 000920 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT 902 (1223)
Q Consensus 852 pF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lp 902 (1223)
|||+.+.+.++..+|+||||+||+++++.|||+|.+++ +++|++|++++|
T Consensus 408 ~~~~~~~~~~~~~~g~GlGL~i~~~~~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 408 RFYRVDPARSNSGEGTGLGLAIVRSIMEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred ccccCCcccCCCCCCccccHHHHHHHHHHCCCEEEEEe-CCCceEEEEecC
Confidence 99999887666778999999999999999999999999 999999999987
|
Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. |
| >PRK09835 sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-28 Score=292.27 Aligned_cols=228 Identities=27% Similarity=0.437 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000920 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL-DAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEP 690 (1223)
Q Consensus 612 k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l-~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l 690 (1223)
..+.++....+.+|++++|||||||++.|.+.++.+..... ..+..+.+..+.....++..++++++++++.+.+...+
T Consensus 252 ~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~ 331 (482)
T PRK09835 252 IERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQLIP 331 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 33445555567889999999999999999999988765433 34445667777778889999999999999999998888
Q ss_pred ceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCcc
Q 000920 691 EFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770 (1223)
Q Consensus 691 ~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~ 770 (1223)
...++++.++++++...+...+.++++.+.+..+ +..+.+|+.+|++|+.||++||+||+++++.|.|++...++
T Consensus 332 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~~~~-- 406 (482)
T PRK09835 332 EKKMLDLADEVGKVFDFFEAWAEERGVELRFVGD---PCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQEVDH-- 406 (482)
T ss_pred CceeecHHHHHHHHHHHHHHHHhhCCEEEEEeCC---CcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCC--
Confidence 8899999999999999999999999988876532 34578999999999999999999999877888887753221
Q ss_pred ccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhc
Q 000920 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF 850 (1223)
Q Consensus 771 ~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLF 850 (1223)
.+.|+|+|+|.|||++.++++|
T Consensus 407 ----------------------------------------------------------~~~i~v~d~G~gi~~~~~~~if 428 (482)
T PRK09835 407 ----------------------------------------------------------QVQLVVENPGTPIAPEHLPRLF 428 (482)
T ss_pred ----------------------------------------------------------EEEEEEEECCCCcCHHHHHHHh
Confidence 4789999999999999999999
Q ss_pred CCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 000920 851 TPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903 (1223)
Q Consensus 851 epF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl 903 (1223)
+|||+.+.+..+..+|+||||+||+++++.|||+|+++|.+ .|++|++.+|.
T Consensus 429 ~~f~~~~~~~~~~~~g~GlGL~i~~~i~~~~~g~i~~~s~~-~g~~~~i~lP~ 480 (482)
T PRK09835 429 DRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDA-RGTRFVISLPR 480 (482)
T ss_pred CCcccCCCCCCCCCCCcchHHHHHHHHHHHCCCEEEEEECC-CcEEEEEEeeC
Confidence 99999987766666899999999999999999999999975 69999999985
|
|
| >COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-29 Score=290.71 Aligned_cols=235 Identities=30% Similarity=0.463 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000920 605 YHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT---ELDAAQLDYAQTAHNSGKDLISLINDVLDQA 681 (1223)
Q Consensus 605 ~~el~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~---~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~s 681 (1223)
..++.+++..+|+.+....+|...+||++|+||+.|.++.++|... .++.+.++++..+.+-...+.++|+|++.++
T Consensus 507 aeela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s 586 (750)
T COG4251 507 AEELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYS 586 (750)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456667777788888889999999999999999999999999754 6788999999999999999999999999999
Q ss_pred HHhcCCCCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCC-CeEE
Q 000920 682 KIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDK-GHIF 760 (1223)
Q Consensus 682 Kiesgkl~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~-G~I~ 760 (1223)
++.. ......+.|+.+++++++........+.++++.+. + +| .+.+|+.++.|++.||+.|||||..++ ..|.
T Consensus 587 ~l~~--~~~~l~~td~~~vv~~vl~~l~~ri~dtgaei~i~--~-lp-~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~ 660 (750)
T COG4251 587 KLGL--TEAPLQPTDVQKVVDKVLLELSQRIADTGAEIRIA--P-LP-VVAADATQLGQVFQNLIANAIKFGGPENPDIE 660 (750)
T ss_pred hhcc--ccCCCCCcchHHHHHHHHHhcccccccccceEEec--c-cc-eeecCHHHHHHHHHHHHhhheecCCCCCCceE
Confidence 9855 44555588999999999999999999999988763 3 66 477999999999999999999998655 5566
Q ss_pred EEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCC
Q 000920 761 VSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840 (1223)
Q Consensus 761 V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiG 840 (1223)
|+....++ .+.++|.|+|+|
T Consensus 661 I~~~r~ed------------------------------------------------------------~~t~sV~dng~G 680 (750)
T COG4251 661 ISAERQED------------------------------------------------------------EWTFSVRDNGIG 680 (750)
T ss_pred EeeeccCC------------------------------------------------------------ceEEEecCCCCC
Confidence 65432221 367999999999
Q ss_pred CCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccCC
Q 000920 841 IPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGE 907 (1223)
Q Consensus 841 I~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~~ 907 (1223)
|++...++||..|.+..+ ..+|.|||+||+|||+|++.|+|.|+|+|.+|+|+||.|++|....+
T Consensus 681 i~~a~~~riF~iFqRl~s--~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~~~e 745 (750)
T COG4251 681 IDPAYFERIFVIFQRLHS--RDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVGGEE 745 (750)
T ss_pred cCHHHHHHHHHHHHhcCc--hhhhcCCCccHHHHHHHHHHhCceEEEeecCCCceeEEEEeecCCcC
Confidence 999999999999987753 45688999999999999999999999999999999999999987654
|
|
| >TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-28 Score=306.01 Aligned_cols=226 Identities=23% Similarity=0.365 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccee
Q 000920 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFV 693 (1223)
Q Consensus 614 ~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~ 693 (1223)
+.++......+|.+.+|||+||||+.|.+.++.+.....+.+..++++.+....+++..++++++++++++.+....+..
T Consensus 477 ~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~~~~~~~~~ 556 (703)
T TIGR03785 477 RLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMSEATRLEQAIQSAEVE 556 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccce
Confidence 44444555678999999999999999999999998777778888899999999999999999999999999988888889
Q ss_pred eecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccc
Q 000920 694 PFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKV 773 (1223)
Q Consensus 694 ~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~ 773 (1223)
++|+.+++++++..+......+++.+.+..+ +..+.+|+..|.||+.||++||+||++++|.|.|++...++
T Consensus 557 ~~dl~~ll~~~i~~~~~~~~~~~i~l~i~~~---~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~~~~----- 628 (703)
T TIGR03785 557 DFDLSEVLSGCMQGYQMTYPPQRFELNIPET---PLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQNKS----- 628 (703)
T ss_pred eecHHHHHHHHHHHHHHHhhcCCEEEEecCC---CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEEcCC-----
Confidence 9999999999999999888888777765432 23678999999999999999999999888888877653221
Q ss_pred cchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCC
Q 000920 774 DVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPF 853 (1223)
Q Consensus 774 ~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF 853 (1223)
.+.|+|+|+|+|||++.+++||+||
T Consensus 629 -------------------------------------------------------~v~I~V~D~G~GI~~e~~~~IFe~F 653 (703)
T TIGR03785 629 -------------------------------------------------------HALLTVSNEGPPLPEDMGEQLFDSM 653 (703)
T ss_pred -------------------------------------------------------EEEEEEEEcCCCCCHHHHHHHhCCC
Confidence 5789999999999999999999999
Q ss_pred cccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCC-CeEEEEEEEE
Q 000920 854 MQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG-TGSTFSFTVT 902 (1223)
Q Consensus 854 ~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g-~GStF~f~Lp 902 (1223)
++.+.......+|+||||+|||.+++.|||+|.++|.++ +|++|++++|
T Consensus 654 ~t~~~~~~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 654 VSVRDQGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred eecCCCCCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 987755555556899999999999999999999999875 8999999987
|
This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase. |
| >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-26 Score=265.16 Aligned_cols=213 Identities=21% Similarity=0.397 Sum_probs=183.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHH
Q 000920 622 KSQFLATVSHEIRTPMNGVLGMLQ---MLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLH 698 (1223)
Q Consensus 622 Ks~FLA~vSHELRTPLn~IlG~le---lL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~ 698 (1223)
..++.+.+||||+.||++|.++.+ .|.+....++-.+.+..|..-.++|-.+..++-.|++--.+. ..++.+.
T Consensus 384 LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l~ 459 (603)
T COG4191 384 LGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSLR 459 (603)
T ss_pred HHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccHH
Confidence 468999999999999999999875 567778888888899999999999999999999998754433 5688999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCC--CCeEEEEEEEccCccccccch
Q 000920 699 DVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQD--KGHIFVSVHLADDVRSKVDVK 776 (1223)
Q Consensus 699 ~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~--~G~I~V~v~~~~~~~~~~~~~ 776 (1223)
+.|++++.++....+..+.++.....+ .|.+|.+|+.||+|||.|||+||+..+.+ .+.|.|.+...+
T Consensus 460 ~ai~~Al~ll~~R~~~~~~~l~~~~~~-~~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~--------- 529 (603)
T COG4191 460 EAIEGALELLRGRLRAAGVELELDLPD-APLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREG--------- 529 (603)
T ss_pred HHHHHHHHHHHHhhhccCceeeccCCC-CCceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecC---------
Confidence 999999999999999999999887654 35689999999999999999999999843 345555543222
Q ss_pred hhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCccc
Q 000920 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQA 856 (1223)
Q Consensus 777 ~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~ 856 (1223)
..+.|+|.|||+||+++...++|+||+..
T Consensus 530 ---------------------------------------------------~~v~l~VrDnGpGi~~e~~~~lFePF~Tt 558 (603)
T COG4191 530 ---------------------------------------------------GQVVLTVRDNGPGIAPEALPHLFEPFFTT 558 (603)
T ss_pred ---------------------------------------------------CeEEEEEccCCCCCCHHHHHhhcCCcccc
Confidence 15889999999999999999999999943
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 000920 857 DSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903 (1223)
Q Consensus 857 d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl 903 (1223)
+....|.||||+||+.|++.|||+|.+.+.++.|+.|++.|+.
T Consensus 559 ----K~~~~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~~ 601 (603)
T COG4191 559 ----KPVGKGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRR 601 (603)
T ss_pred ----CcccCCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEeec
Confidence 3345799999999999999999999999999999999999974
|
|
| >PRK10337 sensor protein QseC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=285.37 Aligned_cols=221 Identities=23% Similarity=0.359 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000920 613 ARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAA-QLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691 (1223)
Q Consensus 613 ~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~-q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~ 691 (1223)
.+.++......+|++.+|||||||++.+.+.++.+.....+++ ..+++..+.....++..++++++++++++.+.....
T Consensus 228 ~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~~~~~~~ 307 (449)
T PRK10337 228 ARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDSLDNLQD 307 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 3444444556789999999999999999999988765444443 456888899999999999999999999998877667
Q ss_pred eeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccc
Q 000920 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771 (1223)
Q Consensus 692 ~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~ 771 (1223)
..++++.+++++++..+...+..+++++.+..++. +..+.+|+..+.+++.||++||+||++++|.|.|.+..
T Consensus 308 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~~------ 380 (449)
T PRK10337 308 VAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAH-PVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLNA------ 380 (449)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCC-CceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEe------
Confidence 78999999999999999999999999999887643 33567999999999999999999999888887765521
Q ss_pred cccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcC
Q 000920 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851 (1223)
Q Consensus 772 ~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFe 851 (1223)
..++|+|+|+|||++.++++|+
T Consensus 381 ----------------------------------------------------------~~i~i~D~G~Gi~~~~~~~if~ 402 (449)
T PRK10337 381 ----------------------------------------------------------RNFTVRDNGPGVTPEALARIGE 402 (449)
T ss_pred ----------------------------------------------------------eEEEEEECCCCCCHHHHHHhcc
Confidence 2488999999999999999999
Q ss_pred CCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEE
Q 000920 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901 (1223)
Q Consensus 852 pF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~L 901 (1223)
||++.+. +..+|+||||+||++++++|||+|.++|.+++|++|++++
T Consensus 403 ~f~~~~~---~~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 403 RFYRPPG---QEATGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred cccCCCC---CCCCccchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEeC
Confidence 9998653 2346999999999999999999999999999999998763
|
|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=275.70 Aligned_cols=219 Identities=31% Similarity=0.445 Sum_probs=193.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDT--ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLH 698 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~--~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~ 698 (1223)
.+.+|++.++|||||||++|.++++++... ..++...++++.+...+.++..++++++++++++.+.......++++.
T Consensus 113 ~~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~ 192 (333)
T TIGR02966 113 MRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMP 192 (333)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHH
Confidence 345799999999999999999999988654 445566788999999999999999999999999998888888999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhh
Q 000920 699 DVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778 (1223)
Q Consensus 699 ~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~ 778 (1223)
+++..+...+......+++.+.+.+. . +..+.+|+..|.+|+.||++||+||++.++.|.|.+...++
T Consensus 193 ~~i~~~~~~~~~~~~~~~i~i~~~~~-~-~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~---------- 260 (333)
T TIGR02966 193 ALLDHLRDEAEALSQGKNHQITFEID-G-GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRDGG---------- 260 (333)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEcCC-C-CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEcCC----------
Confidence 99999999999999999999988873 2 34678999999999999999999999878888777643221
Q ss_pred hhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCC
Q 000920 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858 (1223)
Q Consensus 779 ~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~ 858 (1223)
.+.|.|.|+|+|||++.++++|+||++.+.
T Consensus 261 --------------------------------------------------~~~i~i~d~G~gi~~~~~~~if~~~~~~~~ 290 (333)
T TIGR02966 261 --------------------------------------------------GAEFSVTDTGIGIAPEHLPRLTERFYRVDK 290 (333)
T ss_pred --------------------------------------------------EEEEEEEecCCCCCHHHHhhhccCceecCc
Confidence 377999999999999999999999998876
Q ss_pred CCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEE
Q 000920 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901 (1223)
Q Consensus 859 stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~L 901 (1223)
..+...+|+||||+||+.+++.|||+|++.|.+++||+|++++
T Consensus 291 ~~~~~~~g~glGL~~~~~~~~~~gG~i~~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 291 SRSRDTGGTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 333 (333)
T ss_pred ccccCCCCCcccHHHHHHHHHHCCCEEEEEecCCCCeEEEEEC
Confidence 6666678999999999999999999999999999999999864
|
Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). |
| >PRK09470 cpxA two-component sensor protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-27 Score=281.49 Aligned_cols=227 Identities=25% Similarity=0.389 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000920 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE 691 (1223)
Q Consensus 612 k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~ 691 (1223)
..+.++....+.+|++++|||+||||++|.+.++++........ .+..+....+++..+|++++++++.+.. ..+.
T Consensus 233 ~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~~---~~~~i~~~~~~l~~~i~~l~~~~~~~~~-~~~~ 308 (461)
T PRK09470 233 VTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGESK---ELERIETEAQRLDSMINDLLVLSRNQQK-NHLE 308 (461)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCChH---HHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccc
Confidence 34445555567789999999999999999999998865443322 4566778899999999999999998765 3567
Q ss_pred eeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccc
Q 000920 692 FVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRS 771 (1223)
Q Consensus 692 ~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~ 771 (1223)
..++++.+++++++..+...+..+++.+.+...+ .+..+.+|+..+.+++.||++||+||++ +.|.|.+...++
T Consensus 309 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~l~~~l~nli~NA~~~~~--~~i~i~~~~~~~--- 382 (461)
T PRK09470 309 RETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPP-GPWPINGNPNALASALENIVRNALRYSH--TKIEVAFSVDKD--- 382 (461)
T ss_pred cceecHHHHHHHHHHHHHHHHHHCCCeEEEecCC-cceEEEECHHHHHHHHHHHHHHHHHhCC--CcEEEEEEEECC---
Confidence 7889999999999999888888889988887433 2446789999999999999999999984 456666543221
Q ss_pred cccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcC
Q 000920 772 KVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFT 851 (1223)
Q Consensus 772 ~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFe 851 (1223)
.+.|+|+|+|+||+++.++++|+
T Consensus 383 ---------------------------------------------------------~~~i~V~D~G~Gi~~~~~~~if~ 405 (461)
T PRK09470 383 ---------------------------------------------------------GLTITVDDDGPGVPEEEREQIFR 405 (461)
T ss_pred ---------------------------------------------------------EEEEEEEECCCCCCHHHHHHhcC
Confidence 47899999999999999999999
Q ss_pred CCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 852 PFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 852 pF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
||++.+...++..+|+||||+||+++++.|||++.+.|.++.||+|++++|+..
T Consensus 406 ~~~~~~~~~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~~ 459 (461)
T PRK09470 406 PFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPLYK 459 (461)
T ss_pred CCccCCcccCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEeeCCC
Confidence 999988777777789999999999999999999999999999999999999753
|
|
| >PRK09467 envZ osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-27 Score=278.39 Aligned_cols=218 Identities=23% Similarity=0.344 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000920 610 ELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLE 689 (1223)
Q Consensus 610 e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~ 689 (1223)
++.++.++..+.+..|++++||||||||+.|.+.++++.+. .....+.+....+++..++++++++++.+.+
T Consensus 217 ~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l~~~r~~~~--- 288 (435)
T PRK09467 217 QMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFIDYLRTGQE--- 288 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---
Confidence 34445566667788999999999999999999988877432 2234456778889999999999999987643
Q ss_pred cceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCc
Q 000920 690 PEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDV 769 (1223)
Q Consensus 690 l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~ 769 (1223)
....++++.+++++++..+. ..+..+.+.++.. +..+.+|+..|++|+.||++||+||+ +|.|.|++...+
T Consensus 289 ~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~--~~~i~i~~~~~~-- 359 (435)
T PRK09467 289 MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG--NGWIKVSSGTEG-- 359 (435)
T ss_pred CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC--CCeEEEEEEecC--
Confidence 34578899999999887654 3445555555443 33688999999999999999999998 467777664321
Q ss_pred cccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhh
Q 000920 770 RSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRI 849 (1223)
Q Consensus 770 ~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rL 849 (1223)
..+.|+|+|+|+||+++.++++
T Consensus 360 ----------------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~~ 381 (435)
T PRK09467 360 ----------------------------------------------------------KRAWFQVEDDGPGIPPEQLKHL 381 (435)
T ss_pred ----------------------------------------------------------CEEEEEEEecCCCcCHHHHHHh
Confidence 1478999999999999999999
Q ss_pred cCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEec
Q 000920 850 FTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 850 FepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
|+||++.+... ..+|+||||+||+++++.|||+|.+.|.+++|++|++++|+.
T Consensus 382 ~~~f~~~~~~~--~~~g~GlGL~iv~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 382 FQPFTRGDSAR--GSSGTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred cCCcccCCCCC--CCCCeehhHHHHHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 99999987643 347999999999999999999999999999999999999974
|
|
| >COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=258.80 Aligned_cols=223 Identities=27% Similarity=0.449 Sum_probs=182.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHH
Q 000920 620 VAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHD 699 (1223)
Q Consensus 620 ~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ 699 (1223)
++-+.+..+++|||||||.||.|.+++|...-.++..++|.+.|.+.+++|.+|++.+.-++- .-..+..++|++.
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~ 205 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHE 205 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcccccchHHH
Confidence 355678999999999999999999999987777777999999999999999999998855542 2344566899999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccC----CCCeEEEEEEEccCccccccc
Q 000920 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQ----DKGHIFVSVHLADDVRSKVDV 775 (1223)
Q Consensus 700 ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~----~~G~I~V~v~~~~~~~~~~~~ 775 (1223)
+++.|..+....+ ..++.+.-++++++|. +.+|+++|.|++.||+.||..+-. ++|.|.++.+..-..
T Consensus 206 VLerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~------ 277 (363)
T COG3852 206 VLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQL------ 277 (363)
T ss_pred HHHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEE------
Confidence 9999999877655 3578998899999997 669999999999999999999863 247887766321100
Q ss_pred hhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcc
Q 000920 776 KDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQ 855 (1223)
Q Consensus 776 ~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q 855 (1223)
++ .....+..+.+.|.|+|+|||++.++++|.||..
T Consensus 278 ---------------------~i-----------------------~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs 313 (363)
T COG3852 278 ---------------------TI-----------------------AGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVS 313 (363)
T ss_pred ---------------------Ec-----------------------cCceeEeeeeeEEecCCCCCChHHhhhccccccc
Confidence 00 0011223467889999999999999999999983
Q ss_pred cCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 856 ADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 856 ~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
.+.+||||||+|+++++..|||.|+++|.|| .|+|++.+|...
T Consensus 314 ------~r~~GsGLGLala~~li~qH~G~Ie~~S~Pg-~T~FrvllP~~~ 356 (363)
T COG3852 314 ------GREGGTGLGLALAQNLIDQHGGKIEFDSWPG-RTVFRVLLPIRK 356 (363)
T ss_pred ------cCCCCccccHHHHHHHHHhcCCEEEEeccCC-ceEEEEEeeccc
Confidence 2347999999999999999999999999997 599999999865
|
|
| >PRK11100 sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-26 Score=275.08 Aligned_cols=220 Identities=27% Similarity=0.457 Sum_probs=194.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDV 700 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~l 700 (1223)
...+|++.++||+|||++.+.+.++++.+....+...+++..+.....++..++++++++++++.........++++.++
T Consensus 255 ~~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (475)
T PRK11100 255 YVEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALAAL 334 (475)
T ss_pred HHHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHHHH
Confidence 34578999999999999999999999887555666778999999999999999999999999998887778899999999
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhh
Q 000920 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780 (1223)
Q Consensus 701 l~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l 780 (1223)
++++...+...+..+++.+.+.++ +..+.+|...|.+++.||+.||+||+.++|.|.|++...++
T Consensus 335 ~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~~~------------ 399 (475)
T PRK11100 335 LEELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVDGE------------ 399 (475)
T ss_pred HHHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCC------------
Confidence 999999999999999999988765 34577899999999999999999999878888888764321
Q ss_pred hhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCC
Q 000920 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860 (1223)
Q Consensus 781 ~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~st 860 (1223)
.+.|+|+|+|+|||++.++++|+||++.+..
T Consensus 400 ------------------------------------------------~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~- 430 (475)
T PRK11100 400 ------------------------------------------------QVALSVEDQGPGIPDYALPRIFERFYSLPRP- 430 (475)
T ss_pred ------------------------------------------------EEEEEEEECCCCCCHHHHHHHHHHHccCCCC-
Confidence 5789999999999999999999999976542
Q ss_pred CCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEec
Q 000920 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 861 sr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
....+|+||||+||+++++.|||+|.++|.++.||+|.+.+|..
T Consensus 431 ~~~~~~~GlGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 431 ANGRKSTGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPRH 474 (475)
T ss_pred CCCCCCcchhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEeeCC
Confidence 23457999999999999999999999999999999999999863
|
|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-27 Score=269.33 Aligned_cols=218 Identities=28% Similarity=0.464 Sum_probs=176.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDV 700 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~l 700 (1223)
+..+|++.+||||||||++|.|+++++.+...++...++++.+..++.++..++++++++.+.. ...+.++..+
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~------~~~~~~l~~~ 202 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPG------THVTESIHKV 202 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCC------CCccccHHHH
Confidence 4578999999999999999999999988766667778899999999999999999999775532 2346799999
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcc-CCCCeEEEEEEEccCccccccchhhh
Q 000920 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFT-QDKGHIFVSVHLADDVRSKVDVKDKV 779 (1223)
Q Consensus 701 l~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT-~~~G~I~V~v~~~~~~~~~~~~~~~~ 779 (1223)
++.+...+.... .+++.+.+..++..| .+.+|+.+|.||+.||++||+||+ +.+|.|.|.+.......
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~--------- 271 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT--------- 271 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc---------
Confidence 999888776554 467888877766655 467899999999999999999998 67788877653211100
Q ss_pred hhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCC
Q 000920 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSS 859 (1223)
Q Consensus 780 l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~s 859 (1223)
.........+.|.|.|+|+|||++.++++|+||++.
T Consensus 272 -----------------------------------------~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~--- 307 (348)
T PRK11073 272 -----------------------------------------LHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSG--- 307 (348)
T ss_pred -----------------------------------------cCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccC---
Confidence 000000114679999999999999999999999843
Q ss_pred CCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 000920 860 TSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903 (1223)
Q Consensus 860 tsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl 903 (1223)
+.+|+||||+|||.+++.|||+|+++|.+|+ |+|++.+|+
T Consensus 308 ---~~~g~GlGL~i~~~iv~~~gG~i~~~s~~~~-~~f~i~lP~ 347 (348)
T PRK11073 308 ---REGGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347 (348)
T ss_pred ---CCCCccCCHHHHHHHHHHcCCeEEEEecCCc-eEEEEEEec
Confidence 2469999999999999999999999999885 999999996
|
|
| >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-25 Score=247.79 Aligned_cols=217 Identities=42% Similarity=0.738 Sum_probs=185.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcceeeecHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGR-LEPEFVPFHLHD 699 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgk-l~l~~~~fdL~~ 699 (1223)
.+..|++.++||+|||++++.+.++++.....+ .+..++..+....+++..++++++++++.+.+. .......+++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEGLLD-PQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 478899999999999999999998866544222 267788888889999999999999999998873 444467788999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhh
Q 000920 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779 (1223)
Q Consensus 700 ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~ 779 (1223)
+++++...+......+++.+....+ .+..+.+|+.++.||+.||++||+||++ ++.|.|.+...++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~-~~~i~i~~~~~~~----------- 258 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTP-GGEITISVRQDDE----------- 258 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCC-CCeEEEEEEecCC-----------
Confidence 9999999999988888888886544 3346789999999999999999999997 8888887753221
Q ss_pred hhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCC
Q 000920 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSS 859 (1223)
Q Consensus 780 l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~s 859 (1223)
.+.++|.|+|+||+++.++++|+||++.+..
T Consensus 259 -------------------------------------------------~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~ 289 (336)
T COG0642 259 -------------------------------------------------QVTISVEDTGPGIPEEELERIFEPFFRTDKS 289 (336)
T ss_pred -------------------------------------------------eEEEEEEcCCCCCCHHHHHHhccCeeccCCC
Confidence 4789999999999999999999999977654
Q ss_pred CCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 860 TSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 860 tsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
.+ |+||||+||+.+++.|||+|.++|.+|.||+|++++|...
T Consensus 290 ~~----g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 290 RS----GTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred CC----CCCccHHHHHHHHHHcCCEEEEEecCCCceEEEEEEeccc
Confidence 32 9999999999999999999999999999999999999864
|
|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=275.14 Aligned_cols=215 Identities=27% Similarity=0.530 Sum_probs=188.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDV 700 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~l 700 (1223)
+..+|++.++||+||||+.|.|+++++.....+....+++..+....+++..++++++++++.+.. ...++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRES----QWQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcC----ccceecHHHH
Confidence 457899999999999999999999998776667777889999999999999999999999987543 3468999999
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhh
Q 000920 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780 (1223)
Q Consensus 701 l~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l 780 (1223)
++++...+......+++.+.+.+++..+ .+.+|+..|.|++.||+.||+||+..+|.|.|++...++
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~------------ 531 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSD------------ 531 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCC------------
Confidence 9999999998878899999888876655 467899999999999999999998778888887753221
Q ss_pred hhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCC
Q 000920 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860 (1223)
Q Consensus 781 ~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~st 860 (1223)
..+.|+|+|+|+|||++.++++|+||++.+
T Consensus 532 -----------------------------------------------~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~--- 561 (607)
T PRK11360 532 -----------------------------------------------GQVAVSIEDNGCGIDPELLKKIFDPFFTTK--- 561 (607)
T ss_pred -----------------------------------------------CEEEEEEEeCCCCCCHHHHhhhcCCceeCC---
Confidence 027899999999999999999999999543
Q ss_pred CCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 861 sr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
..|+||||++++.++++|||+|+++|.+|+||+|++++|+..
T Consensus 562 ---~~g~glGL~~~~~~~~~~~G~i~~~s~~~~Gt~~~i~lp~~~ 603 (607)
T PRK11360 562 ---AKGTGLGLALSQRIINAHGGDIEVESEPGVGTTFTLYLPINP 603 (607)
T ss_pred ---CCCCchhHHHHHHHHHHcCCEEEEEEcCCCceEEEEEecCCC
Confidence 358999999999999999999999999999999999999854
|
|
| >PF03924 CHASE: CHASE domain; InterPro: IPR006189 The CHASE domain is an extracellular domain of 200-230 amino acids, which is found in transmembrane receptors from bacteria, lower eukaryotes and plants | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-26 Score=241.62 Aligned_cols=186 Identities=29% Similarity=0.467 Sum_probs=139.6
Q ss_pred CCCCCHHHHHHHHHH--hhhcCCCccceeeccccCchhHHHHHHHhccceeeeccccccccccCCCCCCCCCCCCCccce
Q 000920 337 PSAVDQKTFGEYTER--TAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAP 414 (1223)
Q Consensus 337 ~~~vd~~~F~~~t~~--~~~~~p~i~gv~~~~~V~~~eR~~fE~~~~~~i~~~~~~~~~i~~~~~~~~~~p~~~r~~Y~P 414 (1223)
++.|++++|..|++. ++.++|++.+++|+|+|.+++|++||+++. ....+++.|+ |.+.+++|+|
T Consensus 2 s~~v~~~eF~~f~~~~~~~~~~~~i~~l~w~~~V~~~~r~~fe~~~~----~~~~~~f~i~---------~~~~~~~~~p 68 (193)
T PF03924_consen 2 SEEVTREEFERFSRSLQLLQRHPGIQALAWAPRVPPEEREAFEAQLR----AEGFPDFRIR---------PDGPRDEYFP 68 (193)
T ss_dssp S----HHHHHHHHHH--TGGGSTTEEEEEEEE-EEGGGHHHHHHHHT----------S--B---------TTS--SEE-B
T ss_pred CCccCHHHHHHHHHHHhHhhhCchheEEEEeccCCHHHHHHHHHHHh----hhcccceEee---------eCCCCCCceE
Confidence 578999999999999 999999999999999999999999999964 3334445444 3447999999
Q ss_pred eeeccccc--cceeeeccCCChhhHHHHHHHHHcCCcccccceeecccC--CceEEEEEEeeccCCCCCCCHHHHHHhhh
Q 000920 415 VIFSQETV--SHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSN--HLGVVLTFAVYNTDLPQDATPEQRIEATL 490 (1223)
Q Consensus 415 vi~~~~~~--~~~~g~Dm~s~~~rr~ai~~Ar~tg~~~lt~p~~L~~~~--~~G~~l~~pvy~~~~~~~~~~~~r~~a~~ 490 (1223)
|.|.+|.. ..++|+|++|+|.||++|.+|++||++++|+|++|++.+ +.|++++.|||..+.+...++++|..+++
T Consensus 69 v~yi~P~~~n~~~lG~Dl~s~p~~~~al~~A~~tg~~~~s~p~~L~~~~~~~~g~l~~~PVy~~~~~~~~~~~~r~~~~~ 148 (193)
T PF03924_consen 69 VTYIEPLEGNEAALGLDLASDPERREALERARDTGEPVASGPIRLVQGGDQQPGFLLFAPVYDRDGPPPSTPADRRRAFW 148 (193)
T ss_dssp EEEE-GGG--GGGBTBBGGGSHHHHHHHHHHHHHSS-EE--SEE-TTT----EEEEEEEEEE-TT--SS--HHHHHHTEE
T ss_pred EEEeecchhHHhccCcCcCCCHHHHHHHHHHHHhCCeEEeccEEccCCCCcCcEEEEEeeeecCCCCCCCChhHhhhcee
Confidence 98877655 679999999999999999999999999999999999865 59999999999776667788999999999
Q ss_pred eEEEEeeehHHHHHHHHHhhhccceEEEEEeecCCCCCCccccCC
Q 000920 491 GYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINMYGP 535 (1223)
Q Consensus 491 G~v~~~~~v~~l~~~~l~~~~~~~~i~v~vyd~~~~~~~~~~y~~ 535 (1223)
||+.++|++++|++.++........+.+.+||.+...++..+|++
T Consensus 149 G~v~~v~~~~~l~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ly~s 193 (193)
T PF03924_consen 149 GFVSAVFRVDDLFESALSELSSEDGLDLRLYDGDSGSDPELLYQS 193 (193)
T ss_dssp EEEEEEEEHHHHHHHHHHTSTTGGGEEEEEEE-SSTTS-EEEES-
T ss_pred EEEEEEEEHHHHHHHHhhhccccCcEEEEEEECCCCCCCCcccCc
Confidence 999999999999999987765335699999998777777778864
|
It has been named CHASE (Cyclases/Histidine kinases Associated Sensory Extracellular) because of its presence in diverse receptor-like proteins with histidine kinase and nucleotide cyclase domains. The CHASE domain always occurs N-terminally in extracellular or periplasmic locations, followed by an intracellular tail housing diverse enzymatic signalling domains such as histidine kinase (IPR005467 from INTERPRO), adenyl cyclase, GGDEF-type nucleotide cyclase and EAL-type phosphodiesterase domains, as well as non-enzymatic domains such PAS (IPR000014 from INTERPRO), GAF (IPR003018 from INTERPRO), phosphohistidine and response regulatory domains. The CHASE domain is predicted to bind diverse low molecular weight ligands, such as the cytokinin-like adenine derivatives or peptides, and mediate signal transduction through the respective receptors [, ]. The CHASE domain has a predicted alpha+beta fold, with two extended alpha helices on both boundaries and two central alpha helices separated by beta sheets. The termini are less conserved compared with the central part of the domain, which shows strongly conserved motifs.; PDB: 3T4L_B 3T4K_B 3T4S_B 3T4Q_A 3T4J_B 3T4T_B 3T4O_A. |
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-25 Score=280.80 Aligned_cols=213 Identities=15% Similarity=0.216 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000920 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESG 686 (1223)
Q Consensus 607 el~e~k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesg 686 (1223)
+.+++.++++++..+|++|+++|||||||||++|.|+++++.+...++....++..+......+..+++.++..
T Consensus 590 erK~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------ 663 (807)
T PRK13560 590 ERKHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQS------ 663 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 33344455566677899999999999999999999999998877677777777666665555555555544321
Q ss_pred CCCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCC---CeEEEEE
Q 000920 687 RLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDK---GHIFVSV 763 (1223)
Q Consensus 687 kl~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~---G~I~V~v 763 (1223)
....++++.++++++...+......+...+.+.++...+.....+...+.|||.||++||+||+..+ |.|.|++
T Consensus 664 ---~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~ 740 (807)
T PRK13560 664 ---EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEI 740 (807)
T ss_pred ---ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEE
Confidence 2345789999999999988877766666666666554444445567788999999999999998543 5666665
Q ss_pred EEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCH
Q 000920 764 HLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPL 843 (1223)
Q Consensus 764 ~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~ 843 (1223)
...+ ...+.|+|+|||+|||+
T Consensus 741 ~~~~-----------------------------------------------------------~~~v~i~V~D~G~GI~~ 761 (807)
T PRK13560 741 REQG-----------------------------------------------------------DGMVNLCVADDGIGLPA 761 (807)
T ss_pred EEcC-----------------------------------------------------------CCEEEEEEEeCCCcCCc
Confidence 4221 11578999999999998
Q ss_pred HhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 844 EAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 844 e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
+.. ...|+||||+|||+||++|||+|+|+|. +||+|+|+||+..
T Consensus 762 ~~~----------------~~~~~gLGLai~~~iv~~~gG~I~v~S~--~Gt~F~i~lP~~~ 805 (807)
T PRK13560 762 GFD----------------FRAAETLGLQLVCALVKQLDGEIALDSR--GGARFNIRFPMSP 805 (807)
T ss_pred ccc----------------ccccCCccHHHHHHHHHHcCCEEEEEcC--CceEEEEEecCCC
Confidence 731 1247889999999999999999999994 7999999999753
|
|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-24 Score=267.76 Aligned_cols=204 Identities=24% Similarity=0.360 Sum_probs=165.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDA-AQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHD 699 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~-~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ 699 (1223)
+.+++.+.++||||||++.+..+++.......++ .+.++++.+.++.+++..+++++.+. ....+..++++.+
T Consensus 474 ~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~------~~~~~~~~~~l~~ 547 (679)
T TIGR02916 474 AFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSK------GLEEEKLCVDLVD 547 (679)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccccCCccccHHH
Confidence 4467889999999999999988888766544444 45567888888888888888776432 2356667899999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhh
Q 000920 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKV 779 (1223)
Q Consensus 700 ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~ 779 (1223)
+++++...+... ...+++ .++++ ..+.+|+.+++||+.||++||+||++++|.|.|++...++
T Consensus 548 ll~~~~~~~~~~--~~~~~l--~~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~~~----------- 610 (679)
T TIGR02916 548 LLRRAIASKRAQ--GPRPEV--SIDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVERECG----------- 610 (679)
T ss_pred HHHHHHHHhhhh--cCCceE--EeCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEcCC-----------
Confidence 999998876542 233344 33333 3578999999999999999999999888888887753221
Q ss_pred hhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHh-HhhhcCCCcccCC
Q 000920 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA-QVRIFTPFMQADS 858 (1223)
Q Consensus 780 l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~-~~rLFepF~q~d~ 858 (1223)
.+.|+|+|+|+|||++. ++++|+||++.+
T Consensus 611 -------------------------------------------------~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~- 640 (679)
T TIGR02916 611 -------------------------------------------------AARIEIEDSGCGMSPAFIRERLFKPFDTTK- 640 (679)
T ss_pred -------------------------------------------------EEEEEEEEcCCCcChHHHHHhcCCCCCCCC-
Confidence 57899999999999999 999999998543
Q ss_pred CCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEE
Q 000920 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT 902 (1223)
Q Consensus 859 stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lp 902 (1223)
.+|+||||+|||++++.|||+|+++|.+|+||+|++++|
T Consensus 641 -----~~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 641 -----GAGMGIGVYECRQYVEEIGGRIEVESTPGQGTIFTLVLP 679 (679)
T ss_pred -----CCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEeC
Confidence 269999999999999999999999999999999999987
|
Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes. |
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=246.07 Aligned_cols=196 Identities=27% Similarity=0.368 Sum_probs=138.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHHHH
Q 000920 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLD 702 (1223)
Q Consensus 623 s~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ll~ 702 (1223)
.++++.++||+||||++|.|++++... .+..+++..+ +......++++++..+ . .++.
T Consensus 340 ~~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~----------~-----~~~~ 397 (542)
T PRK11086 340 ADALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKT---ANNYQEEIGSLLGKIK----------S-----PVIA 397 (542)
T ss_pred HHHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHH---HHHHHHHHHHHHHhcc----------C-----HHHH
Confidence 456788999999999999999987432 1222333222 2222223333332111 0 1122
Q ss_pred HHHHHHHHHHHhcCcEEEEEecCCCCceE-EeCHHHHHHHHHHHHHHHHhccC--CCCeEEEEEEEccCccccccchhhh
Q 000920 703 NVLSLFSSKANQKGIELAIYVSDRVPEVV-IGDPGRFRQIITNLVGNSIKFTQ--DKGHIFVSVHLADDVRSKVDVKDKV 779 (1223)
Q Consensus 703 ~vl~~f~~~a~~k~I~l~v~v~~~~p~~v-~gD~~rL~QIL~NLLsNAIKfT~--~~G~I~V~v~~~~~~~~~~~~~~~~ 779 (1223)
..+......+.++++.+.+..++..|... ..+...|.||+.||++||+||+. +++.|.|++...+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~------------ 465 (542)
T PRK11086 398 GFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYRN------------ 465 (542)
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcC------------
Confidence 22233344677889988887765555322 23446899999999999999974 3566766654321
Q ss_pred hhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCC
Q 000920 780 LEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSS 859 (1223)
Q Consensus 780 l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~s 859 (1223)
..+.|+|+|+|+|||++.++++|+||+..
T Consensus 466 ------------------------------------------------~~~~i~V~D~G~gi~~~~~~~iF~~~~~~--- 494 (542)
T PRK11086 466 ------------------------------------------------GWLHCEVSDDGPGIAPDEIDAIFDKGYST--- 494 (542)
T ss_pred ------------------------------------------------CEEEEEEEECCCCCCHHHHHHHHhCCCcc---
Confidence 15789999999999999999999999842
Q ss_pred CCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeccC
Q 000920 860 TSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEG 906 (1223)
Q Consensus 860 tsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~~ 906 (1223)
+.+|+||||+|||.+++.|||+|+++|.+|+||+|+|++|+...
T Consensus 495 ---~~~g~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~~~ 538 (542)
T PRK11086 495 ---KGSNRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDGE 538 (542)
T ss_pred ---CCCCCcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCCCC
Confidence 24699999999999999999999999999999999999998643
|
|
| >COG3614 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-21 Score=211.39 Aligned_cols=230 Identities=14% Similarity=0.168 Sum_probs=187.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHH
Q 000920 264 WRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQK 343 (1223)
Q Consensus 264 ~~~~~l~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~d~~a~~lq~~~~~~~~~~~aL~~l~~~~~~~~~~~~vd~~ 343 (1223)
|+++.-++..++++++|+.++..+..-.++.-|..|...+|.++.+|++.++.+.+-+.+-.+||.+ +..+|++.
T Consensus 10 ~~~~~pl~~~i~~LLltl~~~g~a~~~t~~~sr~~fe~~A~~~~nal~~rv~~~~~~l~st~a~f~s-----~~~~it~~ 84 (348)
T COG3614 10 VRVWVPLLVLIVSLLLTLTAAGLAYSLTLEQSRTLFERLADRQTNALQQRVDLDQHLLRSTRAFFRS-----STSDITRR 84 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccCCCcHH
Confidence 4455555555566777777777777777777888899999999999999999999999999999975 36689999
Q ss_pred HHHHHHHHhhhcCCCccceeeccccCchhHHHHHHHhccceeeeccccccccccCCCCCCCC-CCCCCccceeeeccccc
Q 000920 344 TFGEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDP-APVQDEYAPVIFSQETV 422 (1223)
Q Consensus 344 ~F~~~t~~~~~~~p~i~gv~~~~~V~~~eR~~fE~~~~~~i~~~~~~~~~i~~~~~~~~~~p-~~~r~~Y~Pvi~~~~~~ 422 (1223)
+|+.|+. ++.-.-.+.|+.|.+.|...+++.||+.+. .-..+++++..-...+...| .+.+++||||.|.+|-+
T Consensus 85 ~Fr~fs~-~ld~~~~~~~~q~igfv~~~~~e~~ear~~----~~~l~~~~~~~p~~~~~i~pl~t~~~~rypI~~iePl~ 159 (348)
T COG3614 85 EFRRFSL-TLDGDQSFIALQWIGFVRPVQAETFEARLQ----QDFLENFQPTVPKTGEIIYPLGTDDPARYPIQYIEPLN 159 (348)
T ss_pred HHHHhhh-hhcccccchhhhcccccchhhhccchhhhh----hhhhhcCCCcccCCCcccccCCCCCcceeeeEeecCCC
Confidence 9999998 777778899999999999999999999852 22334555555555566778 78899999998887754
Q ss_pred ---cceeeeccCCChhhHHHHHHHHHcCCcccccceeecccC-----CceEEEEEEeeccCCCCCCCHHHHHHhhheEEE
Q 000920 423 ---SHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSN-----HLGVVLTFAVYNTDLPQDATPEQRIEATLGYLG 494 (1223)
Q Consensus 423 ---~~~~g~Dm~s~~~rr~ai~~Ar~tg~~~lt~p~~L~~~~-----~~G~~l~~pvy~~~~~~~~~~~~r~~a~~G~v~ 494 (1223)
..++||||+|+|.||+|+..|++++...+|+|++|+|.. ..|++++.|||....+....+.++ .++||++
T Consensus 160 ~~N~~aLGfDm~SE~~rR~A~d~al~n~q~~aT~pv~LvQ~~g~~q~~~gfLv~~Pv~~s~~~~~~~~gq~--~l~Gfl~ 237 (348)
T COG3614 160 YDNRKALGFDMESEPFRRAAADEALENRQPHATGPVTLVQGGGDKQIVKGFLVYMPVFRSGDDESPLPGQA--VLVGFLY 237 (348)
T ss_pred ccchhhhcchhccCHHHHHHHHHHHhcCCCcccCceeeeecccccccccceEEEEeeeccCCCCCCCcchh--hhhhhHH
Confidence 569999999999999999999999999999999999842 368999999998766555544333 4679999
Q ss_pred EeeehHHHHHH
Q 000920 495 ASYDVPSLVEK 505 (1223)
Q Consensus 495 ~~~~v~~l~~~ 505 (1223)
..+...+++..
T Consensus 238 ~~~~~~~~~qs 248 (348)
T COG3614 238 LATRFEKLVQS 248 (348)
T ss_pred HHHHHhhhhhh
Confidence 88888776653
|
|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-21 Score=235.79 Aligned_cols=197 Identities=20% Similarity=0.264 Sum_probs=144.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHHHHH
Q 000920 624 QFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDN 703 (1223)
Q Consensus 624 ~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ll~~ 703 (1223)
+.+..++||++|||++|.|++++-. ..+..+.+...+..+..+++++...-+ ...+...
T Consensus 340 e~l~~~~he~~n~L~~i~g~l~~~~-------~~~~~~~i~~~s~~~~~l~~~l~~~~~--------------~~~~~~~ 398 (545)
T PRK15053 340 ESLRTLRHEHLNWMSTLNGLLQMKE-------YDRVLEMVQGESQAQQQLIDSLREAFA--------------DRQVAGL 398 (545)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhch-------hhHHHHHHHHHHHHHHHHHHHHHHhcc--------------cHHHHHH
Confidence 3566789999999999999887531 223556666677777777777655322 1122222
Q ss_pred HHHHHHHHHHhcCcEEEEEecCCCCc-eEEeCHHHHHHHHHHHHHHHHhcc---CCC-CeEEEEEEEccCccccccchhh
Q 000920 704 VLSLFSSKANQKGIELAIYVSDRVPE-VVIGDPGRFRQIITNLVGNSIKFT---QDK-GHIFVSVHLADDVRSKVDVKDK 778 (1223)
Q Consensus 704 vl~~f~~~a~~k~I~l~v~v~~~~p~-~v~gD~~rL~QIL~NLLsNAIKfT---~~~-G~I~V~v~~~~~~~~~~~~~~~ 778 (1223)
+. .....++++++.+.+........ ....|+..|.||+.||++||+||. +++ +.|.|.+...+
T Consensus 399 l~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~----------- 466 (545)
T PRK15053 399 LF-GKVQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEG----------- 466 (545)
T ss_pred HH-HHHHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECC-----------
Confidence 22 22345677888887754433211 235699999999999999999994 322 45665543211
Q ss_pred hhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCC
Q 000920 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858 (1223)
Q Consensus 779 ~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~ 858 (1223)
..+.|+|+|+|+|||++.++++|+|||..+
T Consensus 467 -------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk- 496 (545)
T PRK15053 467 -------------------------------------------------DDVVIEVADQGCGVPESLRDKIFEQGVSTR- 496 (545)
T ss_pred -------------------------------------------------CEEEEEEEeCCCCcCHHHHHHHhCCCCCCC-
Confidence 147899999999999999999999999643
Q ss_pred CCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 859 stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
++..+|+||||+|||++++.|||+|+++|.+|.||+|++++|...
T Consensus 497 --~~~~~g~GlGL~ivk~iv~~~~G~i~v~s~~~~Gt~f~i~lP~~~ 541 (545)
T PRK15053 497 --ADEPGEHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIPKVK 541 (545)
T ss_pred --CCCCCCceeCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEECCCC
Confidence 334568999999999999999999999999999999999999753
|
|
| >PRK11644 sensory histidine kinase UhpB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=229.60 Aligned_cols=195 Identities=15% Similarity=0.235 Sum_probs=151.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecH
Q 000920 619 DVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD-AAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHL 697 (1223)
Q Consensus 619 ~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~-~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL 697 (1223)
+..+.++.+.+.||+||||++|.+..+++.+...+ ++..+..+.+.+.+.++.+.++++++..+- ....++++
T Consensus 299 e~~r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~------~~l~~~~L 372 (495)
T PRK11644 299 ESVRRDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRP------RQLDDLTL 372 (495)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCC------cccccCCH
Confidence 34566888999999999999999999988654433 445577888899999999999999865441 22346899
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchh
Q 000920 698 HDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777 (1223)
Q Consensus 698 ~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~ 777 (1223)
.+.+++++..+..... ++.+.++.+.+.+....+|+..+.|++.|+++||+||++ .+.|.|++...++
T Consensus 373 ~~~l~~l~~~l~~~~~--~~~v~l~~~~~~~~l~~~~~~~L~ril~nlL~NAiKha~-~~~I~I~l~~~~~--------- 440 (495)
T PRK11644 373 EQAIRSLMREMELEDR--GIVSHLDWRIDESALSETQRVTLFRVCQEGLNNIVKHAD-ASAVTLQGWQQDE--------- 440 (495)
T ss_pred HHHHHHHHHHHHHhhc--CceEEEEecCCcccCChhHHHHHHHHHHHHHHHHHHhCC-CCEEEEEEEEcCC---------
Confidence 9999999988765544 444444433222223456788899999999999999994 5777776643221
Q ss_pred hhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccC
Q 000920 778 KVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD 857 (1223)
Q Consensus 778 ~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d 857 (1223)
.+.++|+|+|+|||++.
T Consensus 441 ---------------------------------------------------~i~l~V~DnG~Gi~~~~------------ 457 (495)
T PRK11644 441 ---------------------------------------------------RLMLVIEDDGSGLPPGS------------ 457 (495)
T ss_pred ---------------------------------------------------EEEEEEEECCCCCCcCC------------
Confidence 57899999999998651
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 000920 858 SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903 (1223)
Q Consensus 858 ~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl 903 (1223)
.|+|+||+|+|++++.|||+|+++| ++||+|++++|.
T Consensus 458 -------~~~GLGL~ivr~iv~~~GG~i~v~S--~~Gt~f~I~LP~ 494 (495)
T PRK11644 458 -------GQQGFGLRGMRERVTALGGTLTISC--THGTRLSVSLPQ 494 (495)
T ss_pred -------CCCCCcHHHHHHHHHHcCCEEEEEc--CCCEEEEEEEeC
Confidence 3679999999999999999999999 889999999984
|
|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=220.19 Aligned_cols=210 Identities=23% Similarity=0.381 Sum_probs=165.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhc---CCCCH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceee
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMD---TELDA--A-QLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVP 694 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~---~~l~~--~-q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~ 694 (1223)
|-++-..-++|||||||+-|.-.++-|.. .++++ + -.++.++|.+...++.+|+++.-+|+|+- ++..++
T Consensus 485 AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP----~p~~e~ 560 (712)
T COG5000 485 AWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMP----APKLEK 560 (712)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCc
Confidence 34455566999999999999999988763 23333 2 23578899999999999999999999864 455678
Q ss_pred ecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCC-------CCeEEEEEEEcc
Q 000920 695 FHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQD-------KGHIFVSVHLAD 767 (1223)
Q Consensus 695 fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~-------~G~I~V~v~~~~ 767 (1223)
.||++++.+++.++.. ....+.+...+... |.....|+..|.|++.||+.||..+-.. .+.| +++..+
T Consensus 561 ~dL~~ll~e~~~L~e~--~~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i--~~~~~~ 635 (712)
T COG5000 561 SDLRALLKEVSFLYEI--GNDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALI--RVSLDD 635 (712)
T ss_pred chHHHHHHHHHHHHhc--cCCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceE--EEEEec
Confidence 8999999999987654 33567787777665 7778889999999999999999998632 1222 222211
Q ss_pred CccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHh
Q 000920 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQV 847 (1223)
Q Consensus 768 ~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~ 847 (1223)
....+++.|.|||.|.|.|.+.
T Consensus 636 ----------------------------------------------------------~~g~i~v~V~DNGkG~p~e~r~ 657 (712)
T COG5000 636 ----------------------------------------------------------ADGRIVVDVIDNGKGFPRENRH 657 (712)
T ss_pred ----------------------------------------------------------CCCeEEEEEecCCCCCChHHhh
Confidence 1125889999999999999999
Q ss_pred hhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeC-CCeEEEEEEEEe
Q 000920 848 RIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP-GTGSTFSFTVTF 903 (1223)
Q Consensus 848 rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~-g~GStF~f~Lpl 903 (1223)
++|+||+.. +..||||||+|+|+|+|.|||.|.+...| -.|..+.+.+|.
T Consensus 658 r~~EPYvTt------r~KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 658 RALEPYVTT------REKGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred hhccCceec------ccccccccHHHHHHHHHhcCCeEEecCCCCCCCcEEEEEccc
Confidence 999999843 23699999999999999999999998874 359999888886
|
|
| >COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-20 Score=203.82 Aligned_cols=116 Identities=24% Similarity=0.411 Sum_probs=108.6
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||||||++..+..+...|++.||.|+++.+|++|++.+.. . ||+|++|++||+|||+++|++||+..
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-~-~dlviLD~~lP~~dG~~~~~~iR~~~---------- 69 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE-Q-PDLVLLDLMLPDLDGLELCRRLRAKK---------- 69 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-C-CCEEEEECCCCCCCHHHHHHHHHhhc----------
Confidence 79999999999999999999999999999999999999875 5 99999999999999999999999531
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
...+|||++||..+.+++..++++||||||+|||++.+|.++|+..+.
T Consensus 70 -----------~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lR 117 (229)
T COG0745 70 -----------GSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLR 117 (229)
T ss_pred -----------CCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHC
Confidence 235799999999999999999999999999999999999999998875
|
|
| >COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=196.64 Aligned_cols=211 Identities=23% Similarity=0.345 Sum_probs=172.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHH
Q 000920 623 SQFLATVSHEIRTPMNGVLGMLQ---MLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHD 699 (1223)
Q Consensus 623 s~FLA~vSHELRTPLn~IlG~le---lL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ 699 (1223)
.+-+.++||||..|||++..++- ...+...+.....++..|..-.+++-.+||.+-.|+|-.+++-. ..|+++.+
T Consensus 452 GqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~--lqpV~L~~ 529 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDES--LQPVRLNS 529 (673)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--cccccHHH
Confidence 46678899999999999988863 33345566777899999999999999999999999998776544 46899999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCC-CeEEEEEEEccCccccccchhh
Q 000920 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDK-GHIFVSVHLADDVRSKVDVKDK 778 (1223)
Q Consensus 700 ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~-G~I~V~v~~~~~~~~~~~~~~~ 778 (1223)
+++.+..++..+.+.+.+.+..-. + ..+|.||..+++||+.||+-||+.++... ..|.+.+.-.
T Consensus 530 ~v~~AweLl~~khk~rQ~~Li~pt--D-~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~------------ 594 (673)
T COG4192 530 VVEQAWELLQTKHKRRQIKLINPT--D-DLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALGT------------ 594 (673)
T ss_pred HHHHHHHHHHhhhhhccccccCCc--c-cceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEeecC------------
Confidence 999999999999988888775432 2 23789999999999999999999987443 3444433210
Q ss_pred hhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCC
Q 000920 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858 (1223)
Q Consensus 779 ~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~ 858 (1223)
+...++|.|.|+|.|-|-+..+++|+||..
T Consensus 595 -----------------------------------------------~~e~l~i~i~DnGqGwp~~l~dkLl~PFtt--- 624 (673)
T COG4192 595 -----------------------------------------------EQEMLRIAIIDNGQGWPHELVDKLLTPFTT--- 624 (673)
T ss_pred -----------------------------------------------cccceEEEEecCCCCCchhHHHHhcCCccc---
Confidence 112588999999999999999999999963
Q ss_pred CCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 000920 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903 (1223)
Q Consensus 859 stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl 903 (1223)
.+.-|.|||||||..|++.|.|.+.+.|...+|..+.+.+..
T Consensus 625 ---sK~vgLGlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f~v 666 (673)
T COG4192 625 ---SKEVGLGLGLSISQSLMEQMQGRLALASTLTKNAMVILEFQV 666 (673)
T ss_pred ---ccccccccchhHHHHHHHHhcCcchHhhhcccCcEEEEEEee
Confidence 234699999999999999999999999999999987766543
|
|
| >PRK13559 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-19 Score=205.74 Aligned_cols=187 Identities=14% Similarity=0.213 Sum_probs=142.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDV 700 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~l 700 (1223)
++.+|++.++||+||||+.|.|+++++... ....++++.+.....+|..+++++|+.++ ..++++.++
T Consensus 169 ~~~~l~~~l~H~~~n~L~~i~~~~~l~~~~---~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~ 236 (361)
T PRK13559 169 HERRLAREVDHRSKNVFAVVDSIVRLTGRA---DDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEEL 236 (361)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHH
Confidence 346789999999999999999999988622 22345778888889999999999887543 467899999
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeC-HHHHHHHHHHHHHHHHhc---cCCCCeEEEEEEEccCccccccch
Q 000920 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD-PGRFRQIITNLVGNSIKF---TQDKGHIFVSVHLADDVRSKVDVK 776 (1223)
Q Consensus 701 l~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD-~~rL~QIL~NLLsNAIKf---T~~~G~I~V~v~~~~~~~~~~~~~ 776 (1223)
+++++..+... +..+.+..+ .. .+..| ...|.||+.||++||+|| ++.+|.|.|.+.....
T Consensus 237 ~~~~~~~~~~~----~~~i~~~~~-~~--~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~-------- 301 (361)
T PRK13559 237 IRAQVAPYAPR----ATRVAFEGP-GI--RLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSPE-------- 301 (361)
T ss_pred HHHHHHhhcCC----CceEEEECC-Ce--eeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCC--------
Confidence 99998876532 344444322 11 12222 356999999999999999 6677888887632111
Q ss_pred hhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCccc
Q 000920 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQA 856 (1223)
Q Consensus 777 ~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~ 856 (1223)
...+.+.|.|+|.|++++
T Consensus 302 --------------------------------------------------~~~~~i~v~d~G~~~~~~------------ 319 (361)
T PRK13559 302 --------------------------------------------------GAGFRIDWQEQGGPTPPK------------ 319 (361)
T ss_pred --------------------------------------------------CCeEEEEEECCCCCCCCC------------
Confidence 115789999999997653
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHH-cCCEEEEEEeCCCeEEEEEEEEec
Q 000920 857 DSSTSRTYGGTGIGLSISRCLVEL-MGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 857 d~stsr~~gGTGLGLsI~k~LVel-mgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
..|+|+||.||+.+++. |||+|++++. +.|++|++++|..
T Consensus 320 -------~~~~g~Gl~i~~~~v~~~~gG~i~~~~~-~~G~~~~l~~P~~ 360 (361)
T PRK13559 320 -------LAKRGFGTVIIGAMVESQLNGQLEKTWS-DDGLLARIEIPSR 360 (361)
T ss_pred -------CCCCCcHHHHHHHHHHHHcCCeEEEEEc-CCeEEEEEEEeCC
Confidence 24789999999999997 9999999997 5799999999963
|
|
| >PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-19 Score=172.66 Aligned_cols=110 Identities=38% Similarity=0.735 Sum_probs=99.9
Q ss_pred eCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccc
Q 000920 733 GDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWEN 812 (1223)
Q Consensus 733 gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~ 812 (1223)
||+.+|++|+.||+.||++|+++++.|.|.+...++
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~-------------------------------------------- 36 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDDD-------------------------------------------- 36 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETT--------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecC--------------------------------------------
Confidence 799999999999999999999887999998865332
Q ss_pred cccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCC
Q 000920 813 FKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892 (1223)
Q Consensus 813 ~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g 892 (1223)
.+.|+|+|+|.|||++.++++|+||++.+. .....+|+||||++|+.++++|+|+|++.+.++
T Consensus 37 ----------------~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~ 99 (111)
T PF02518_consen 37 ----------------HLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIVKQIAERHGGELTIESSEG 99 (111)
T ss_dssp ----------------EEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETT
T ss_pred ----------------eEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHHHHHHHHCCCEEEEEEcCC
Confidence 588999999999999999999999998876 334557899999999999999999999999999
Q ss_pred CeEEEEEEEEe
Q 000920 893 TGSTFSFTVTF 903 (1223)
Q Consensus 893 ~GStF~f~Lpl 903 (1223)
.||+|+|++|+
T Consensus 100 ~gt~v~~~~p~ 110 (111)
T PF02518_consen 100 GGTTVTFTLPL 110 (111)
T ss_dssp TEEEEEEEEEG
T ss_pred CcEEEEEEEEC
Confidence 99999999996
|
The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D .... |
| >PRK09581 pleD response regulator PleD; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-17 Score=196.35 Aligned_cols=255 Identities=19% Similarity=0.241 Sum_probs=185.0
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
+++++|+++.....+...+...|+.+..+.+..++...+... .++++++|....+.. +..+. +..+...
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-------~~dlvi~d~~~~~~~-g~~l~---~~i~~~~ 72 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICERE-------QPDIILLDVMMPGMD-GFEVC---RRLKSDP 72 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhc-------CCCEEEEeCCCCCCC-HHHHH---HHHHcCc
Confidence 689999999999999889998999999999999998877532 457888887655432 33322 2222211
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchh---H-hhhhcCC----------Cc
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSK---K-LQQKRKK----------PS 1074 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~---~-~~~~~~~----------~~ 1074 (1223)
. ....|.++ ++..............|...++.||+....+...+........ . ....... ..
T Consensus 73 ~---~~~~~ii~-~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (457)
T PRK09581 73 A---TTHIPVVM-VTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLKMVIDELRLRASTNAEIGVTALMIMA 148 (457)
T ss_pred c---cCCCCEEE-EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHhhccc
Confidence 1 01345444 4333444445556678888999999988777654432211000 0 0000000 00
Q ss_pred cccCCCCcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhh
Q 000920 1075 LGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENE 1154 (1223)
Q Consensus 1075 ~~~~~~~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~ 1154 (1223)
........+||||||++..+..+..+|.. ++.+..+.+|.+|+..+. .+.||+|++|+.||+|||++++++||+.+.
T Consensus 149 ~~~~~~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~-~~~~d~vi~d~~~p~~~g~~l~~~i~~~~~- 225 (457)
T PRK09581 149 YANKDEDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAA-ETNYDLVIVSANFENYDPLRLCSQLRSKER- 225 (457)
T ss_pred ccccccCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcc-cCCCCEEEecCCCCCchHhHHHHHHHhccc-
Confidence 11123456899999999999999999965 577788999999999875 478999999999999999999999996431
Q ss_pred hhhhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1155 INEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1155 ~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
..++|||++|++.+.+...+|+++|++||+.||++.++|...|.+..
T Consensus 226 -------------------~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~ 272 (457)
T PRK09581 226 -------------------TRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQI 272 (457)
T ss_pred -------------------cCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999998887643
|
|
| >PRK10935 nitrate/nitrite sensor protein NarQ; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-16 Score=196.10 Aligned_cols=193 Identities=21% Similarity=0.253 Sum_probs=139.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH----HhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHH
Q 000920 625 FLATVSHEIRTPMNGVLGMLQM----LMDT--ELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLH 698 (1223)
Q Consensus 625 FLA~vSHELRTPLn~IlG~lel----L~~~--~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~ 698 (1223)
..+.++||+++|++.++.++.+ +... ...+...+.+..+......+...+.+++...+ ....++++.
T Consensus 363 ~~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~~~~~~l~ 435 (565)
T PRK10935 363 ERATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LTIQEANLG 435 (565)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCCCHH
Confidence 4456899999999888777653 3221 22344456666777777777777777776433 344578999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhh
Q 000920 699 DVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDK 778 (1223)
Q Consensus 699 ~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~ 778 (1223)
+.+.+++..+... .++.+.+....+.+....+++.++.|++.||+.||+||++ .|.|.+.+...++
T Consensus 436 ~~l~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~-~~~i~i~~~~~~~---------- 501 (565)
T PRK10935 436 SALEEMLDQLRNQ---TDAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHAN-ASEIAVSCVTNPD---------- 501 (565)
T ss_pred HHHHHHHHHHHHh---hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEEEEEcCC----------
Confidence 9999999988754 3344444332111112234456799999999999999984 6777776643211
Q ss_pred hhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCC
Q 000920 779 VLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS 858 (1223)
Q Consensus 779 ~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~ 858 (1223)
..+.++|.|+|+|||++.
T Consensus 502 -------------------------------------------------~~~~i~V~D~G~Gi~~~~------------- 519 (565)
T PRK10935 502 -------------------------------------------------GEHTVSIRDDGIGIGELK------------- 519 (565)
T ss_pred -------------------------------------------------CEEEEEEEECCcCcCCCC-------------
Confidence 157899999999998631
Q ss_pred CCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 859 STSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 859 stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
..|+|+||+||+++++.|||+|+++|.+|+||+|++++|...
T Consensus 520 -----~~~~glGL~i~~~iv~~~~G~i~v~s~~~~Gt~~~i~lP~~~ 561 (565)
T PRK10935 520 -----EPEGHYGLNIMQERAERLGGTLTISQPPGGGTTVSLTFPSQQ 561 (565)
T ss_pred -----CCCCCcCHHHHHHHHHHcCCEEEEEECCCCcEEEEEEECCCC
Confidence 247899999999999999999999999999999999999753
|
|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=187.68 Aligned_cols=194 Identities=31% Similarity=0.463 Sum_probs=144.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHHHHHH
Q 000920 625 FLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNV 704 (1223)
Q Consensus 625 FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ll~~v 704 (1223)
-|...+||.+|-|+.|.|++++=. -++..+|+..+.+.-+ ..++.+.. ++. ...+...
T Consensus 336 aLRaq~HEfmNkLhtI~GLlql~~----yd~a~~~I~~~~~~qq---~~~~~l~~--~i~-------------~~~lAg~ 393 (537)
T COG3290 336 ALRAQSHEFMNKLHTILGLLQLGE----YDDALDYIQQESEEQQ---ELIDSLSE--KIK-------------DPVLAGF 393 (537)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHhhhh---hhHHHHHH--hcc-------------cHHHHHH
Confidence 356679999999999999998732 2233445444433322 22222211 111 2345556
Q ss_pred HHHHHHHHHhcCcEEEEEecCCCCce-EEeCHHHHHHHHHHHHHHHHhccC---CCCeEEEEEEEccCccccccchhhhh
Q 000920 705 LSLFSSKANQKGIELAIYVSDRVPEV-VIGDPGRFRQIITNLVGNSIKFTQ---DKGHIFVSVHLADDVRSKVDVKDKVL 780 (1223)
Q Consensus 705 l~~f~~~a~~k~I~l~v~v~~~~p~~-v~gD~~rL~QIL~NLLsNAIKfT~---~~G~I~V~v~~~~~~~~~~~~~~~~l 780 (1223)
+--...+|+++|+.+.++....+|.. -.-++.-+--|+-||++||+..+- ++..|.++++...
T Consensus 394 LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~------------- 460 (537)
T COG3290 394 LLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRG------------- 460 (537)
T ss_pred HHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecC-------------
Confidence 66666789999999999877665542 234889999999999999999986 4466766664322
Q ss_pred hhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCC
Q 000920 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860 (1223)
Q Consensus 781 ~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~st 860 (1223)
..+.|+|+|||+|||++.++++|+.-+..+
T Consensus 461 -----------------------------------------------~~lvieV~D~G~GI~~~~~~~iFe~G~Stk--- 490 (537)
T COG3290 461 -----------------------------------------------DELVIEVADTGPGIPPEVRDKIFEKGVSTK--- 490 (537)
T ss_pred -----------------------------------------------CEEEEEEeCCCCCCChHHHHHHHhcCcccc---
Confidence 158999999999999999999999877322
Q ss_pred CCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 861 sr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
..+|.|+||+++|++|+.+||.|+++|+++.||+|++.+|...
T Consensus 491 --~~~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~ 533 (537)
T COG3290 491 --NTGGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVK 533 (537)
T ss_pred --CCCCCchhHHHHHHHHHHcCceEEEeeCCCCceEEEEECCCCc
Confidence 2478999999999999999999999999999999999999864
|
|
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-17 Score=190.52 Aligned_cols=118 Identities=29% Similarity=0.468 Sum_probs=111.1
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||||||++..|.++..+|...||.|..+.|+.+|++.+... .||+|++|+.||+|||++++++|++..
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~-~~~lvl~Di~mp~~~Gl~ll~~i~~~~--------- 74 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES-PFDLVLLDIRMPGMDGLELLKEIKSRD--------- 74 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC-CCCEEEEecCCCCCchHHHHHHHHhhC---------
Confidence 4699999999999999999999999999999999999999864 799999999999999999999999753
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~~ 1222 (1223)
.++|||+||++.+.++..++++.||-|||.|||+.++|...|.|.++.
T Consensus 75 -------------~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~ 122 (464)
T COG2204 75 -------------PDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALEL 122 (464)
T ss_pred -------------CCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999998863
|
|
| >PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=152.63 Aligned_cols=111 Identities=34% Similarity=0.558 Sum_probs=104.4
Q ss_pred EEEEecChhHHHHHHHHHhhCCC-EEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1084 ILVVDDNMVNRRVAEGALKKHGA-IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1084 ILVVDDn~~n~~vl~~~L~~~G~-~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
||||||++..+..+...|+..|+ .+..+.++.+|++.+.. +.||+||+|+.||+++|.++++.||+..
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~-~~~d~iiid~~~~~~~~~~~~~~i~~~~---------- 69 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK-HPPDLIIIDLELPDGDGLELLEQIRQIN---------- 69 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH-STESEEEEESSSSSSBHHHHHHHHHHHT----------
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc-cCceEEEEEeeecccccccccccccccc----------
Confidence 79999999999999999999999 99999999999999964 6799999999999999999999999743
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~ 1217 (1223)
+++|||++|+..+.+...+++++|+++||.||++.++|.++|+
T Consensus 70 ------------~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 70 ------------PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp ------------TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ------------ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 3689999999999999999999999999999999999999874
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A .... |
| >COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-16 Score=155.19 Aligned_cols=120 Identities=33% Similarity=0.488 Sum_probs=106.1
Q ss_pred CCcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHH-HHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhh
Q 000920 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGR-AAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQ 1158 (1223)
Q Consensus 1080 ~~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~-eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~ 1158 (1223)
.+.+||+|||++.++..+..+|...|+.+..+.+|. +|++.+.....||+|++|++||+|||+++++++|+.
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~~~dlii~D~~mp~~~G~~~~~~l~~~------- 76 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDINMPGMDGIELLRRLRAR------- 76 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhC-------
Confidence 456899999999999999999999999999999996 999998742259999999999999999999999963
Q ss_pred hhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHH-HHHHHHHHhh
Q 000920 1159 IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQ-LYTAVARFFM 1221 (1223)
Q Consensus 1159 i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~-L~~~v~r~l~ 1221 (1223)
...+|||++|++........++++|+++|+.||+...+ |...+.+++.
T Consensus 77 ---------------~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 77 ---------------GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred ---------------CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 12578999999999988888899999999999977666 7888887764
|
|
| >COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.7e-17 Score=181.32 Aligned_cols=120 Identities=26% Similarity=0.425 Sum_probs=109.8
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
..+||+|||.+.|+..++..|+..||.+..+++|++|++.... +.+|+||+|++||+|||+|++++|+.+.+
T Consensus 14 ~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~-~~~dlvllD~~mp~mdg~ev~~~lk~~~p------- 85 (360)
T COG3437 14 KLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE-EPPDLVLLDVRMPEMDGAEVLNKLKAMSP------- 85 (360)
T ss_pred cceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcc-cCCceEEeeccCCCccHHHHHHHHHhcCC-------
Confidence 3579999999999999999999999999999999999998764 56999999999999999999999997543
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
.+.++|||.+||.++.++..+|+++|++|||.||+++.+|..++...+
T Consensus 86 ------------~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~ 133 (360)
T COG3437 86 ------------STRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHL 133 (360)
T ss_pred ------------cccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHH
Confidence 245899999999999999999999999999999999999999886544
|
|
| >COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-16 Score=182.30 Aligned_cols=225 Identities=25% Similarity=0.308 Sum_probs=160.0
Q ss_pred eccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcCCcccccCCCeEEEEeccCCccchhhhhc
Q 000920 957 ANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKS 1036 (1223)
Q Consensus 957 a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~ 1036 (1223)
+.++..++....+ ..++.+++|..+.+.. +..+...++ .. ..+ ++++.....+...-....
T Consensus 18 a~~g~~~l~~~~~-------~~~~~~lld~~m~~~~-~~~~~~~lk---~~-------~~~-~v~~t~~~~~~~~~~~~~ 78 (435)
T COG3706 18 AKKGLIALAILLD-------HKPDYKLLDVMMPGMD-GFELCRRLK---AE-------PAT-VVMVTALDDSAPRVRGLK 78 (435)
T ss_pred ccchHHHHHHHhc-------CCCCeEEeecccCCcC-chhHHHHHh---cC-------Ccc-eEEEEecCCCCcchhHHh
Confidence 5556666655443 3456777776665543 222222111 11 112 344444455556666777
Q ss_pred CCceeeecccccccccccccCC---CCcchhHhhhhc-C------CCccccCCCCcEEEEEecChhHHHHHHHHHhhCCC
Q 000920 1037 DGIVTLLTKPLRLSVLIGCFQE---DPESSKKLQQKR-K------KPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGA 1106 (1223)
Q Consensus 1037 ~g~~~~l~KPl~~s~L~~~l~~---~~~~~~~~~~~~-~------~~~~~~~~~~~rILVVDDn~~n~~vl~~~L~~~G~ 1106 (1223)
.|...+++||+.-+.+...... ............ . .+.... ...++||||||...++..+..+|...|+
T Consensus 79 ~~~~~~l~~~~~~~~~~~r~~~l~~~k~~~de~~~~~~~~~~~~~~~~~~~-~~~~kILvvdD~~~~~~~l~~~L~~~g~ 157 (435)
T COG3706 79 AGADDFLTKPVNDSQLFLRAKSLVRLKCSIDELRLREETGGELGVSPLLPE-DAPKKILVVDDDATQRERLRRILQVEGF 157 (435)
T ss_pred hhhhhhccCCCChHHHHHhhhhhccchhhHHHHhhcccccccccccccccc-ccCceEEEEcCcHHHHHHHHHHHHhccc
Confidence 7888899999876655432211 111111110000 0 111111 1457999999999999999999999999
Q ss_pred EEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccC
Q 000920 1107 IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADV 1186 (1223)
Q Consensus 1107 ~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~ 1186 (1223)
.+..+.+|++|+..+.+ ..||+||.|+.||+||||++|+++|+.+. ...+|||.+|+..
T Consensus 158 ~v~~a~~~~~Al~~~~e-~~~dlil~d~~mp~~dg~el~~~lr~~~~--------------------t~~ipii~~~~~~ 216 (435)
T COG3706 158 RVVEATDGEEALLQLAE-LPPDLVLLDANMPDMDGLELCTRLRQLER--------------------TRDIPIILLSSKD 216 (435)
T ss_pred eeeeecCHHHHHHHHhc-CCCcEEEEecCCCccCHHHHHHHHhcccc--------------------cccccEEEEeccc
Confidence 99999999999999875 58999999999999999999999997653 3579999999999
Q ss_pred CHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 000920 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222 (1223)
Q Consensus 1187 ~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~~ 1222 (1223)
+.+...++++.|++|||+||++..+|..++.+.++.
T Consensus 217 d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~ 252 (435)
T COG3706 217 DDELVVRAFELGVNDYITKPIEEGELRARLRRQLRR 252 (435)
T ss_pred chHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999887754
|
|
| >PRK10600 nitrate/nitrite sensor protein NarX; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.7e-15 Score=182.84 Aligned_cols=183 Identities=17% Similarity=0.201 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHHHHHHHHHHHH
Q 000920 633 IRTPMNGVLGMLQMLM--DTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSS 710 (1223)
Q Consensus 633 LRTPLn~IlG~lelL~--~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ll~~vl~~f~~ 710 (1223)
|..+|+.+...+..+. ....+++.++.+..+....+.+...+.+++...+. ...+.++.+.+.+++..|..
T Consensus 373 i~~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~-------~~~~~~l~~~l~~~~~~~~~ 445 (569)
T PRK10600 373 IAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRL-------QLTEPGLRPALEASCEEFSA 445 (569)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------CcccCCHHHHHHHHHHHHHH
Confidence 3334455544444332 23345677788999999999999999999987654 23457888999999888775
Q ss_pred HHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhhhhhccccccc
Q 000920 711 KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHK 790 (1223)
Q Consensus 711 ~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~ 790 (1223)
.. ++.+.+......+.....++..+.||+.|+++||+||++ .+.|.|.+...+
T Consensus 446 ~~---~~~i~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha~-a~~i~V~~~~~~----------------------- 498 (569)
T PRK10600 446 RF---GFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQ-ASEVVVTVAQNQ----------------------- 498 (569)
T ss_pred Hh---CCeEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEEEEcC-----------------------
Confidence 54 444444433211111112445699999999999999995 567777664321
Q ss_pred ccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccH
Q 000920 791 SDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIG 870 (1223)
Q Consensus 791 ~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLG 870 (1223)
..+.|+|.|+|+|||++. ..|+|+|
T Consensus 499 -------------------------------------~~~~l~V~D~G~Gi~~~~------------------~~~~glG 523 (569)
T PRK10600 499 -------------------------------------NQVKLSVQDNGCGVPENA------------------ERSNHYG 523 (569)
T ss_pred -------------------------------------CEEEEEEEECCCCCCccc------------------cCCCCcc
Confidence 157899999999999752 1367999
Q ss_pred HHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEec
Q 000920 871 LSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 871 LsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
|+||+.+++.|||+|.+.|.+|+||+|++++|..
T Consensus 524 L~i~~~~~~~lgG~l~i~s~~~~Gt~v~i~lp~~ 557 (569)
T PRK10600 524 LIIMRDRAQSLRGDCRVRRRESGGTEVVVTFIPE 557 (569)
T ss_pred HHHHHHHHHHcCCEEEEEECCCCCEEEEEEEecC
Confidence 9999999999999999999999999999999874
|
|
| >COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=180.16 Aligned_cols=116 Identities=22% Similarity=0.369 Sum_probs=105.3
Q ss_pred EEEEEecChhHHHHHHHHHh--hCCCE-EEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALK--KHGAI-VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~--~~G~~-V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
+||||||++..|+-++.++. ++|++ |-.|.||+||++.++. ..||+||+||.||+|||+++++.||+..+
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e-~~pDiviTDI~MP~mdGLdLI~~ike~~p------ 75 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE-TQPDIVITDINMPGMDGLDLIKAIKEQSP------ 75 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh-cCCCEEEEecCCCCCcHHHHHHHHHHhCC------
Confidence 79999999999999999987 56875 5679999999999974 78999999999999999999999997543
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.+-+|++|+..+=+.+.+|++.|++|||.||++.++|..++.++..
T Consensus 76 ----------------~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~ 121 (475)
T COG4753 76 ----------------DTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIG 121 (475)
T ss_pred ----------------CceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999988753
|
|
| >COG4566 TtrR Response regulator [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-15 Score=153.58 Aligned_cols=117 Identities=24% Similarity=0.359 Sum_probs=108.2
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.-|.||||+...|+.+..+|...||.+.+..++.+.+.... ...+.+++.|+.||+|+|.|+-+++++..
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~-~~~pGclllDvrMPg~sGlelq~~L~~~~--------- 74 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP-LDRPGCLLLDVRMPGMSGLELQDRLAERG--------- 74 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhcc-CCCCCeEEEecCCCCCchHHHHHHHHhcC---------
Confidence 46899999999999999999999999999999999998853 56799999999999999999999998643
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|++.+.....+++++||-|||.|||+...|+.+|.+.+.
T Consensus 75 -------------~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~ 121 (202)
T COG4566 75 -------------IRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALA 121 (202)
T ss_pred -------------CCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHH
Confidence 25799999999999999999999999999999999999999998764
|
|
| >PRK10547 chemotaxis protein CheA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.7e-14 Score=172.97 Aligned_cols=146 Identities=22% Similarity=0.370 Sum_probs=113.0
Q ss_pred cHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHH---HHHHHHHHHhcc------------CCCCeEE
Q 000920 696 HLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI---ITNLVGNSIKFT------------QDKGHIF 760 (1223)
Q Consensus 696 dL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QI---L~NLLsNAIKfT------------~~~G~I~ 760 (1223)
.+..+++..-.+....+...+.++.+.+.... +..|+..+.++ |.||+.||++|. +++|.|.
T Consensus 344 p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~~---~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~ 420 (670)
T PRK10547 344 PMEYVFSRFPRLVRDLAGKLGKQVELTLVGSS---TELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLI 420 (670)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCc---eecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCceE
Confidence 45667777777777777766666666554432 45799999999 679999999996 4457777
Q ss_pred EEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCC
Q 000920 761 VSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840 (1223)
Q Consensus 761 V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiG 840 (1223)
+++...+ ..+.|+|+|+|.|
T Consensus 421 l~a~~~~------------------------------------------------------------~~v~I~V~DdG~G 440 (670)
T PRK10547 421 LSAEHQG------------------------------------------------------------GNICIEVTDDGAG 440 (670)
T ss_pred EEEEEcC------------------------------------------------------------CEEEEEEEeCCCC
Confidence 7664321 1578999999999
Q ss_pred CCHHhH---------------------hhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEE
Q 000920 841 IPLEAQ---------------------VRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSF 899 (1223)
Q Consensus 841 I~~e~~---------------------~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f 899 (1223)
|+++.+ ..||+|||..... .+...|+|+||+|||++++.|||+|.++|.+|+||+|++
T Consensus 441 Id~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i 519 (670)
T PRK10547 441 LNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRI 519 (670)
T ss_pred CCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCCEEEEEecCCCcEEEEE
Confidence 998654 4699997754322 233479999999999999999999999999999999999
Q ss_pred EEEecc
Q 000920 900 TVTFTE 905 (1223)
Q Consensus 900 ~Lpl~~ 905 (1223)
++|+..
T Consensus 520 ~LPltl 525 (670)
T PRK10547 520 LLPLTL 525 (670)
T ss_pred EEechh
Confidence 999864
|
|
| >PLN03029 type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=158.85 Aligned_cols=120 Identities=24% Similarity=0.443 Sum_probs=105.5
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCC-------------------CCccEEEEeCCCCCCCH
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP-------------------HNFDACFMDLQMPEMDG 1141 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~-------------------~~~DlIlmDi~MP~MDG 1141 (1223)
..+||||||+..++..+..+|+..|+.|..+.+|.+|++.+... ..||+||+|+.||+|||
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G 87 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTG 87 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCH
Confidence 45899999999999999999999999999999999999987421 24789999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1142 ~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
+++++.||+... ..++|||++|+....+...+|+++|++|||.||++..+|...+..++
T Consensus 88 ~e~l~~ir~~~~--------------------~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~ 146 (222)
T PLN03029 88 YDLLKKIKESSS--------------------LRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMM 146 (222)
T ss_pred HHHHHHHHhccc--------------------cCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHH
Confidence 999999996421 23689999999999999999999999999999999999977766554
|
|
| >COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5e-14 Score=153.49 Aligned_cols=117 Identities=26% Similarity=0.324 Sum_probs=105.2
Q ss_pred EEEEEecChhHHHHHHHHHhhCC-CE-EEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHG-AI-VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G-~~-V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
+||||||.+..|.-++.+|...+ ++ +..+.||.+|++.+. ...||+|+||+.||+|||+++++.||+..
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~-~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~-------- 72 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAR-ELKPDVVLLDLSMPGMDGLEALKQLRARG-------- 72 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhh-hcCCCEEEEcCCCCCCChHHHHHHHHHHC--------
Confidence 69999999999999999999876 76 455667999999865 57899999999999999999999999532
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhc
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFMS 1222 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~~ 1222 (1223)
++++|+++|++.+.+...+++++|+++|+.|..+.++|..+|+..+..
T Consensus 73 --------------p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G 120 (211)
T COG2197 73 --------------PDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAG 120 (211)
T ss_pred --------------CCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 357999999999999999999999999999999999999999987654
|
|
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.8e-14 Score=148.71 Aligned_cols=116 Identities=22% Similarity=0.350 Sum_probs=104.5
Q ss_pred EEEEEecChhHHHHHHHHHhhC-CCE-EEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALKKH-GAI-VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~-G~~-V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
+||||||++....+-+.++++. ||. |-.|.++++|..++.. ..+||||+|+.||+-+|++++..||+.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~-~~pDLILLDiYmPd~~Gi~lL~~ir~~--------- 71 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE-FKPDLILLDIYMPDGNGIELLPELRSQ--------- 71 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh-hCCCEEEEeeccCCCccHHHHHHHHhc---------
Confidence 6999999999999999999986 775 5568899999998874 678999999999999999999999963
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..++-||++||..+.++..+++.+|+-|||.|||..+.|.+++.+|..
T Consensus 72 -------------~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~ 119 (224)
T COG4565 72 -------------HYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQ 119 (224)
T ss_pred -------------CCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHH
Confidence 224569999999999999999999999999999999999999999864
|
|
| >PRK10529 DNA-binding transcriptional activator KdpE; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=149.57 Aligned_cols=115 Identities=23% Similarity=0.389 Sum_probs=105.9
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||+|||++..+..+...|+..|+.+..+.++.+|+..+.. ..||+||+|+.||++||+++++.||+.
T Consensus 3 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~----------- 70 (225)
T PRK10529 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-RKPDLIILDLGLPDGDGIEFIRDLRQW----------- 70 (225)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHcC-----------
Confidence 79999999999999999999999999999999999987753 679999999999999999999999852
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+...+++++|++||+.||++.++|...+.+.+.
T Consensus 71 ------------~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 71 ------------SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 24799999999999999999999999999999999999999987764
|
|
| >PRK10046 dpiA two-component response regulator DpiA; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=151.80 Aligned_cols=116 Identities=17% Similarity=0.246 Sum_probs=104.4
Q ss_pred cEEEEEecChhHHHHHHHHHhhC-CC-EEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKH-GA-IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~-G~-~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+||||||++..+..+...|... |+ .+..+.+|.+|++.+.. ..||+||+|+.||+|||+++++.||+..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~-~~pdlvllD~~mp~~~gle~~~~l~~~~------- 76 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER-FKPGLILLDNYLPDGRGINLLHELVQAH------- 76 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCcHHHHHHHHHhcC-------
Confidence 58999999999999999999864 78 47789999999998864 6799999999999999999999999632
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
.++|||++|+....+...+++++|+++|+.||++.++|..+|+++.
T Consensus 77 ---------------~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 77 ---------------YPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred ---------------CCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHH
Confidence 2468999999999999999999999999999999999999998763
|
|
| >PRK11173 two-component response regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=151.16 Aligned_cols=116 Identities=22% Similarity=0.398 Sum_probs=106.6
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+||+|+.||++||+++++.||+.
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~---------- 72 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-NDINLVIMDINLPGKNGLLLARELREQ---------- 72 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-CCCCEEEEcCCCCCCCHHHHHHHHhcC----------
Confidence 479999999999999999999999999999999999998864 679999999999999999999999852
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|+....+....++++|+|||+.||++.++|...+.+.+.
T Consensus 73 -------------~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 73 -------------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred -------------CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 14799999999999999999999999999999999999988887664
|
|
| >PRK10816 DNA-binding transcriptional regulator PhoP; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=147.73 Aligned_cols=116 Identities=28% Similarity=0.432 Sum_probs=107.0
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||+|||++..+..+...|+..|+.+..+.++.+|+..+. .+.||+|++|+.||+++|+++++.||+..
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-~~~~dlvild~~l~~~~g~~l~~~lr~~~---------- 70 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLN-EHLPDIAIVDLGLPDEDGLSLIRRWRSND---------- 70 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhcC----------
Confidence 6999999999999999999999999999999999999876 46799999999999999999999998632
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+..+.+....++++|++||+.||++.++|...+...+.
T Consensus 71 ------------~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~ 117 (223)
T PRK10816 71 ------------VSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (223)
T ss_pred ------------CCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 25799999999999999999999999999999999999999987764
|
|
| >PRK09836 DNA-binding transcriptional activator CusR; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=147.66 Aligned_cols=116 Identities=23% Similarity=0.406 Sum_probs=106.6
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||||||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+||+|+.||.+||+++++.+|+..
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~~~~~~g~~~~~~lr~~~---------- 70 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT-GDYDLIILDIMLPDVNGWDIVRMLRSAN---------- 70 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-CCCCEEEEECCCCCCCHHHHHHHHHhcC----------
Confidence 69999999999999999999999999999999999987753 6799999999999999999999999632
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+...+++++|++||+.||++.++|..++...+.
T Consensus 71 ------------~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 71 ------------KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred ------------CCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 25799999999999999999999999999999999999999988764
|
|
| >PRK10766 DNA-binding transcriptional regulator TorR; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.5e-13 Score=145.54 Aligned_cols=115 Identities=27% Similarity=0.426 Sum_probs=105.8
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||+|||++..+..+...|...|+.|..+.++.+|++.+.. ..||+|++|+.||.++|+++++.||..
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~---------- 71 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN-QHVDLILLDINLPGEDGLMLTRELRSR---------- 71 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhC----------
Confidence 479999999999999999999999999999999999988764 679999999999999999999999852
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
.++|||++|+..+.....+++++|++||+.||++.++|...+...+
T Consensus 72 -------------~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~ 117 (221)
T PRK10766 72 -------------STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLL 117 (221)
T ss_pred -------------CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHH
Confidence 2579999999999999999999999999999999999999887765
|
|
| >PRK09468 ompR osmolarity response regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-13 Score=147.17 Aligned_cols=118 Identities=28% Similarity=0.416 Sum_probs=108.1
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
..+||||||++..+..+...|+..|+.+..+.++.++++.+.. +.||+||+|+.||.++|+++++.||...
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~lr~~~-------- 75 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR-ESFHLMVLDLMLPGEDGLSICRRLRSQN-------- 75 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------
Confidence 3589999999999999999999999999999999999988764 6799999999999999999999999532
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+....++++|++||+.||++.++|...+.+.+.
T Consensus 76 --------------~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~ 122 (239)
T PRK09468 76 --------------NPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLR 122 (239)
T ss_pred --------------CCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 25799999999999999999999999999999999999999988764
|
|
| >PRK04184 DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-13 Score=162.36 Aligned_cols=117 Identities=24% Similarity=0.442 Sum_probs=93.1
Q ss_pred EeCHHHHHHHHHHHHHHHHhccCCCC---eEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccc
Q 000920 732 IGDPGRFRQIITNLVGNSIKFTQDKG---HIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWK 808 (1223)
Q Consensus 732 ~gD~~rL~QIL~NLLsNAIKfT~~~G---~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~ 808 (1223)
.+++..|.|++.|||+||++|+..+| .|.|.+...+.
T Consensus 31 ~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~---------------------------------------- 70 (535)
T PRK04184 31 DNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDE---------------------------------------- 70 (535)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccC----------------------------------------
Confidence 35678899999999999999997655 46665542210
Q ss_pred cccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCC--CCCCCCcccHHHHHHHHHHHcCCE-E
Q 000920 809 SWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST--SRTYGGTGIGLSISRCLVELMGGE-I 885 (1223)
Q Consensus 809 ~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~st--sr~~gGTGLGLsI~k~LVelmgG~-I 885 (1223)
+...+.|+|+|+|+||+++.++++|.+|+..+... ....||+||||++|+.++++|+|. |
T Consensus 71 -----------------~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I 133 (535)
T PRK04184 71 -----------------GKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPV 133 (535)
T ss_pred -----------------CCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcE
Confidence 11146799999999999999999999987654322 234578999999999999999997 9
Q ss_pred EEEEeCCCeE-EEEEEEEecc
Q 000920 886 GFVSEPGTGS-TFSFTVTFTE 905 (1223)
Q Consensus 886 ~v~S~~g~GS-tF~f~Lpl~~ 905 (1223)
++.|.++.|+ .|+|++++..
T Consensus 134 ~V~S~~~~g~~~~~~~l~id~ 154 (535)
T PRK04184 134 RVISSTGGSKKAYYFELKIDT 154 (535)
T ss_pred EEEEecCCCceEEEEEEEecc
Confidence 9999999998 8999988764
|
|
| >PRK10701 DNA-binding transcriptional regulator RstA; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-13 Score=146.97 Aligned_cols=115 Identities=22% Similarity=0.310 Sum_probs=105.7
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+|++|+.||+++|+++++.||+.
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-~~~dlvild~~l~~~~g~~~~~~ir~~----------- 70 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR-EQPDLVLLDIMLPGKDGMTICRDLRPK----------- 70 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 79999999999999999999999999999999999998864 679999999999999999999999851
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|+........+++++|++||+.||++..+|..++...+.
T Consensus 71 ------------~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~ 117 (240)
T PRK10701 71 ------------WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 (240)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 14699999999999999999999999999999999999999987654
|
|
| >PRK13856 two-component response regulator VirG; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-13 Score=147.40 Aligned_cols=115 Identities=23% Similarity=0.389 Sum_probs=103.6
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+|++|+.||.++|+++++.||..
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~l~~~~g~~l~~~i~~~----------- 70 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS-ETVDVVVVDLNLGREDGLEIVRSLATK----------- 70 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-CCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 79999999999999999999999999999999999988763 679999999999999999999999842
Q ss_pred CcccccccCCCCCcccEEEEecc-CCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTAD-VIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~-~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+. .......+++++|+++|+.||++.++|..+++..+.
T Consensus 71 ------------~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~ 118 (241)
T PRK13856 71 ------------SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred ------------CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHh
Confidence 25799999995 466778899999999999999999999999887654
|
|
| >PRK10643 DNA-binding transcriptional regulator BasR; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.6e-13 Score=143.20 Aligned_cols=116 Identities=26% Similarity=0.442 Sum_probs=106.1
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||||||++..+..+...|...|+.+..+.++.++++.+.. ..||+|++|+.||+++|+++++.||...
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~d~illd~~~~~~~g~~~~~~l~~~~---------- 70 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES-GHYSLVVLDLGLPDEDGLHLLRRWRQKK---------- 70 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-CCCCEEEEECCCCCCCHHHHHHHHHhcC----------
Confidence 69999999999999999999999999999999999998764 6799999999999999999999998532
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+....++++|++||+.||++.++|...+...+.
T Consensus 71 ------------~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 71 ------------YTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred ------------CCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 25799999999999999999999999999999999999999887654
|
|
| >PRK10161 transcriptional regulator PhoB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.5e-13 Score=144.41 Aligned_cols=119 Identities=23% Similarity=0.341 Sum_probs=107.5
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
++||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..||+||+|+.||.+||+++++.||+...
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~l~~~~~-------- 73 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-PWPDLILLDWMLPGGSGIQFIKHLKRESM-------- 73 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-cCCCEEEEeCCCCCCCHHHHHHHHHhccc--------
Confidence 479999999999999999999999999999999999998764 67999999999999999999999986321
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..++|||++|+..+.+...+++++|++||+.||++.++|..++..++.
T Consensus 74 ------------~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 74 ------------TRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred ------------cCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 235799999999999999999999999999999999999999987754
|
|
| >PRK10955 DNA-binding transcriptional regulator CpxR; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.5e-13 Score=143.64 Aligned_cols=114 Identities=26% Similarity=0.458 Sum_probs=104.5
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||||||++..+..+...|+..|+.+..+.++.+|++.+. ..||+||+|+.||++||+++++.||+..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~d~vl~d~~~~~~~g~~~~~~l~~~~---------- 70 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--DSIDLLLLDVMMPKKNGIDTLKELRQTH---------- 70 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh--cCCCEEEEeCCCCCCcHHHHHHHHHhcC----------
Confidence 7999999999999999999999999999999999999775 3699999999999999999999998521
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.+|||++|+.........++++|+++|+.||++.++|..++.+.+.
T Consensus 71 -------------~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 71 -------------QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred -------------CCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 2799999999999999999999999999999999999999988654
|
|
| >TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.6e-13 Score=142.38 Aligned_cols=119 Identities=24% Similarity=0.402 Sum_probs=107.4
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||||||++..+..+...|+..|+.+..+.++.+++..+.. +.||+|++|+.||+++|+++++.||....
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~g~~~~~~l~~~~~-------- 73 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE-RGPDLILLDWMLPGTSGIELCRRLRRRPE-------- 73 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh-cCCCEEEEECCCCCCcHHHHHHHHHcccc--------
Confidence 479999999999999999999999999999999999998864 67999999999999999999999986321
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
...+|||++|+....+...+++++|+++|+.||++.++|..++.+.+.
T Consensus 74 ------------~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 74 ------------TRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLR 121 (226)
T ss_pred ------------CCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhc
Confidence 135799999999999999999999999999999999999999987754
|
PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well. |
| >PRK10430 DNA-binding transcriptional activator DcuR; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-13 Score=147.25 Aligned_cols=115 Identities=16% Similarity=0.286 Sum_probs=101.5
Q ss_pred EEEEEecChhHHHHHHHHHhhC-CCEE-EEECCHHHHHHHhCC-CCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALKKH-GAIV-TCVDCGRAAVDKLTP-PHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~-G~~V-~~a~~G~eAl~~l~~-~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
+||||||++..+..+..+|... |+.+ ..+.++.+|++.+.. ...||+||+|+.||+|||+++++.||+..
T Consensus 3 ~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~------- 75 (239)
T PRK10430 3 NVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAG------- 75 (239)
T ss_pred eEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhC-------
Confidence 7999999999999999999864 6764 578899999987742 35699999999999999999999998632
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1219 (1223)
.++|||++|+....+...+++++|+++|+.||++.++|..+|.++
T Consensus 76 ---------------~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 76 ---------------CKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred ---------------CCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 257999999999999999999999999999999999999999864
|
|
| >TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.2e-13 Score=142.82 Aligned_cols=117 Identities=26% Similarity=0.360 Sum_probs=105.9
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCC--CCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE--MDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~--MDG~eatr~IR~~e~~~~~~i 1159 (1223)
++||||||++..+..+...|+..|+.+..+.++.+++..+.. ..||+|++|+.||+ ++|+++++.||...
T Consensus 1 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~~~g~~~~~~i~~~~------- 72 (227)
T TIGR03787 1 KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ-RLPDLAIIDIGLGEEIDGGFMLCQDLRSLS------- 72 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh-CCCCEEEEECCCCCCCCCHHHHHHHHHhcC-------
Confidence 479999999999999999999999999999999999998764 67999999999998 58999999998532
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+....++++|++||+.||++.++|..++...+.
T Consensus 73 ---------------~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 73 ---------------ATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred ---------------CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 25799999999999999999999999999999999999999887664
|
This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator. |
| >TIGR02875 spore_0_A sporulation transcription factor Spo0A | Back alignment and domain information |
|---|
Probab=99.46 E-value=8e-13 Score=147.93 Aligned_cols=119 Identities=21% Similarity=0.292 Sum_probs=104.4
Q ss_pred cEEEEEecChhHHHHHHHHHhhC-CCEE-EEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKH-GAIV-TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~-G~~V-~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+|||||||+..+..+...|... ++.+ ..+.+|.+|++.+.. ..||+|++|+.||+|||+++++.||....
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~-~~~DlvllD~~mp~~dG~~~l~~i~~~~~------ 75 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE-QQPDVVVLDIIMPHLDGIGVLEKLNEIEL------ 75 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhhcc------
Confidence 47999999999999999999864 4554 478999999998874 67999999999999999999999996421
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
...+|||++|+........+++++|+++|+.||++.++|...+.+++.
T Consensus 76 --------------~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~ 123 (262)
T TIGR02875 76 --------------SARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAW 123 (262)
T ss_pred --------------ccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 124799999999999999999999999999999999999999988753
|
Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species. |
| >PRK10336 DNA-binding transcriptional regulator QseB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=140.75 Aligned_cols=116 Identities=28% Similarity=0.424 Sum_probs=105.9
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||||||++..+..+...|+..|+.+..+.++.+++..+.. ..||+|++|+.||+++|+++++.||+..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~dlvild~~l~~~~g~~~~~~i~~~~---------- 70 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS-APYDAVILDLTLPGMDGRDILREWREKG---------- 70 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEECCCCCCCHHHHHHHHHhcC----------
Confidence 69999999999999999999999999999999999998764 6799999999999999999999998632
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+....++++|++||+.||++.++|..++...+.
T Consensus 71 ------------~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 71 ------------QREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred ------------CCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 25799999999999999999999999999999999999998887653
|
|
| >PRK11517 transcriptional regulatory protein YedW; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=140.07 Aligned_cols=115 Identities=23% Similarity=0.426 Sum_probs=105.7
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||+|||++..+..+...|+..|+.+..+.++.+|+..+. ...||+|++|+.||+++|+++++.||..
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~----------- 69 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL-KDDYALIILDIMLPGMDGWQILQTLRTA----------- 69 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHcC-----------
Confidence 6999999999999999999999999999999999999876 4679999999999999999999999852
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|+....+...+++++|++||+.||++.++|..++...+.
T Consensus 70 ------------~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 116 (223)
T PRK11517 70 ------------KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR 116 (223)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 14799999999999999999999999999999999999999987654
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-13 Score=149.32 Aligned_cols=114 Identities=29% Similarity=0.459 Sum_probs=101.0
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+|+||||+...-..+..+|++.|..+..++...+|++.+. .+.+|+||.|+.||.|+|+|+++++|.+++
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le-~~kpDLifldI~mp~~ngiefaeQvr~i~~--------- 71 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLE-VFKPDLIFLDIVMPYMNGIEFAEQVRDIES--------- 71 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHH-hcCCCEEEEEeecCCccHHHHHHHHHHhhc---------
Confidence 6999999999999999999999999999999999999987 478999999999999999999999998764
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.+|||.+|++..-.+ ..+....+|||.|||+++.|..+|.|..+
T Consensus 72 -------------~v~iifIssh~eya~--dsf~~n~~dYl~KPvt~ekLnraIdr~~k 115 (361)
T COG3947 72 -------------AVPIIFISSHAEYAD--DSFGMNLDDYLPKPVTPEKLNRAIDRRLK 115 (361)
T ss_pred -------------cCcEEEEecchhhhh--hhcccchHhhccCCCCHHHHHHHHHHHhc
Confidence 479999999865433 34444459999999999999999998764
|
|
| >smart00387 HATPase_c Histidine kinase-like ATPases | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-12 Score=121.54 Aligned_cols=110 Identities=52% Similarity=0.885 Sum_probs=94.0
Q ss_pred eCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccc
Q 000920 733 GDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWEN 812 (1223)
Q Consensus 733 gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~ 812 (1223)
+|+..|.+++.|++.||+++...++.|.|.+...+.
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~-------------------------------------------- 36 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDGD-------------------------------------------- 36 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCC--------------------------------------------
Confidence 588999999999999999999766777776653221
Q ss_pred cccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCC
Q 000920 813 FKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPG 892 (1223)
Q Consensus 813 ~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g 892 (1223)
.+.|.|.|+|.|++++...++|.+++.... .....++.|+||++|+.+++.|+|++.+.+.++
T Consensus 37 ----------------~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~ 99 (111)
T smart00387 37 ----------------HLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKKLVELHGGEISVESEPG 99 (111)
T ss_pred ----------------EEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHHHHHHcCCEEEEEecCC
Confidence 478999999999999999999999986553 233456899999999999999999999999989
Q ss_pred CeEEEEEEEEe
Q 000920 893 TGSTFSFTVTF 903 (1223)
Q Consensus 893 ~GStF~f~Lpl 903 (1223)
.|++|+|.+|+
T Consensus 100 ~g~~~~~~~~~ 110 (111)
T smart00387 100 GGTTFTITLPL 110 (111)
T ss_pred CcEEEEEEeeC
Confidence 99999999986
|
Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. |
| >TIGR01387 cztR_silR_copR heavy metal response regulator | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-12 Score=137.70 Aligned_cols=115 Identities=28% Similarity=0.457 Sum_probs=105.3
Q ss_pred EEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCC
Q 000920 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGE 1163 (1223)
Q Consensus 1084 ILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~ 1163 (1223)
||++||++..+..+...|...|+.+..+.++.+|++.+.. +.||+|++|+.||.++|+++++.||...
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvl~d~~~~~~~g~~~~~~l~~~~----------- 68 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK-DDYDLIILDVMLPGMDGWQILQTLRRSG----------- 68 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHccC-----------
Confidence 5899999999999999999999999999999999998864 6799999999999999999999998532
Q ss_pred cccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1164 ~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+....++++|+++|+.||++.++|...+.+.+.
T Consensus 69 -----------~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 115 (218)
T TIGR01387 69 -----------KQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLR 115 (218)
T ss_pred -----------CCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 25799999999999999999999999999999999999999987654
|
Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. |
| >PRK11083 DNA-binding response regulator CreB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-12 Score=138.06 Aligned_cols=117 Identities=26% Similarity=0.418 Sum_probs=106.2
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||||||++..+..+...|...|+.+..+.++.+++..+. ...||+||+|+.||+++|+++++.||+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~~--------- 73 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLR-QQPPDLVILDVGLPDISGFELCRQLLAFH--------- 73 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhhC---------
Confidence 47999999999999999999999999999999999998876 46799999999999999999999999632
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+.........++++|+++|+.||++.++|..++...+.
T Consensus 74 -------------~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 120 (228)
T PRK11083 74 -------------PALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILR 120 (228)
T ss_pred -------------CCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHC
Confidence 25799999999999999999999999999999999999999887654
|
|
| >CHL00148 orf27 Ycf27; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-12 Score=138.23 Aligned_cols=117 Identities=30% Similarity=0.430 Sum_probs=106.3
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
..+||+|||++..+..+...|...|+.+..+.++.+++..+.. ..||+|++|+.||+++|+++++.||..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~-~~~d~illd~~~~~~~g~~~~~~l~~~--------- 75 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK-EQPDLVILDVMMPKLDGYGVCQEIRKE--------- 75 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 3589999999999999999999999999999999999988763 679999999999999999999999852
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+....++++|+++|+.||++.++|..++...+.
T Consensus 76 --------------~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 76 --------------SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred --------------CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 25799999999999999999999999999999999999999887653
|
|
| >PRK09958 DNA-binding transcriptional activator EvgA; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-12 Score=134.67 Aligned_cols=116 Identities=18% Similarity=0.286 Sum_probs=105.5
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEE-EECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
+||+|||++..+..+...|+..|+.+. .+.++.++++.+.. ..||+|++|+.||+++|+++++.+|...
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~~--------- 71 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET-LKPDIVIIDVDIPGVNGIQVLETLRKRQ--------- 71 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc-cCCCEEEEeCCCCCCCHHHHHHHHHhhC---------
Confidence 699999999999999999999999987 69999999998864 6799999999999999999999998632
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
...|||++|+.........++++|+++|+.||++.++|..++...+.
T Consensus 72 -------------~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 118 (204)
T PRK09958 72 -------------YSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred -------------CCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHc
Confidence 24689999999999999999999999999999999999999988764
|
|
| >PRK14084 two-component response regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-12 Score=141.01 Aligned_cols=114 Identities=21% Similarity=0.332 Sum_probs=99.1
Q ss_pred EEEEEecChhHHHHHHHHHhhCC-C-EEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHG-A-IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G-~-~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
+||||||++..+..+..+|+..+ + .+..+.++++|++.+.. +.||+||+|+.||+|||+++++.||+..
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~-~~~dlv~lDi~m~~~~G~~~~~~i~~~~-------- 72 (246)
T PRK14084 2 KALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI-NQYDIIFLDINLMDESGIELAAKIQKMK-------- 72 (246)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhcC--------
Confidence 69999999999999999999876 3 57789999999998864 6799999999999999999999999642
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.+.|||++|+... ...++++.|+++|+.||++.++|..++.++..
T Consensus 73 --------------~~~~iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (246)
T PRK14084 73 --------------EPPAIIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRA 117 (246)
T ss_pred --------------CCCEEEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 2457999998753 56789999999999999999999999988753
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-12 Score=154.47 Aligned_cols=117 Identities=29% Similarity=0.398 Sum_probs=107.8
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||||||++..+..+..+|...|+.+..+.++.+|+..+.. ..||+||+|+.||+|||+++++.||+..
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~-~~~DlvllD~~lp~~dgl~~l~~ir~~~--------- 73 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS-KTPDVLLSDIRMPGMDGLALLKQIKQRH--------- 73 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEECCCCCCCCHHHHHHHHHhhC---------
Confidence 479999999999999999999999999999999999998864 6799999999999999999999998632
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|+....+....++++|+++|+.||++.++|...+.+.+.
T Consensus 74 -------------~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 74 -------------PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred -------------CCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 25799999999999999999999999999999999999999987764
|
|
| >PRK10840 transcriptional regulator RcsB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.4e-12 Score=137.17 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=103.9
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCC--EEEEECCHHHHHHHhCCCCCccEEEEeCCCCC---CCHHHHHHHHHhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGA--IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE---MDGFQATWQIRHLENEIN 1156 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~--~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~---MDG~eatr~IR~~e~~~~ 1156 (1223)
.+||||||++..+..+..+|+..++ .+..+.++.++++.+.. ..||+||+|+.||+ ++|++++++||...
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~---- 78 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK-LDAHVLITDLSMPGDKYGDGITLIKYIKRHF---- 78 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh-CCCCEEEEeCcCCCCCCCCHHHHHHHHHHHC----
Confidence 5799999999999999999988765 37778999999998764 57999999999999 59999999998632
Q ss_pred hhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1157 EQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1157 ~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+....++++|+++|+.||++.++|..+|.....
T Consensus 79 ------------------~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 79 ------------------PSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred ------------------CCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 25799999999999999999999999999999999999999987654
|
|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-12 Score=153.31 Aligned_cols=118 Identities=34% Similarity=0.530 Sum_probs=107.9
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
..+||||||++..+..+...|...|+.+.++.++.+|+..+.. ..||+||+|+.||+|||+++++.||+..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~dlillD~~~p~~~g~~ll~~i~~~~-------- 74 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD-IHPDVVLMDIRMPEMDGIKALKEMRSHE-------- 74 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcC--------
Confidence 4589999999999999999999999999999999999998864 6799999999999999999999998632
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|+....+...+++++|++||+.||++.++|...+.+.+.
T Consensus 75 --------------~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 75 --------------TRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred --------------CCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 25799999999999999999999999999999999999999887653
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.6e-12 Score=153.73 Aligned_cols=117 Identities=25% Similarity=0.383 Sum_probs=107.6
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||||||++.++..+...|+..|+.+..+.++.+|++.+.. ..||+||+|+.||+|||+++++.|+...
T Consensus 6 ~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~-~~~dlvilD~~lp~~~g~~ll~~l~~~~--------- 75 (444)
T PRK15115 6 AHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR-EKVDLVISDLRMDEMDGMQLFAEIQKVQ--------- 75 (444)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHhcC---------
Confidence 589999999999999999999999999999999999998864 6799999999999999999999998532
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|+....+...+++++|++||+.||++.++|...|.+.+.
T Consensus 76 -------------~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 76 -------------PGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred -------------CCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 25799999999999999999999999999999999999999988754
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.9e-12 Score=152.68 Aligned_cols=113 Identities=19% Similarity=0.286 Sum_probs=102.8
Q ss_pred EEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCC-----CCHHHHHHHHHhhhhhhhhh
Q 000920 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE-----MDGFQATWQIRHLENEINEQ 1158 (1223)
Q Consensus 1084 ILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~-----MDG~eatr~IR~~e~~~~~~ 1158 (1223)
||||||++.++..+...| .||.+..+.++.+|++.+.. ..||+||+|+.||+ |||++++++|++..
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~-~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~------ 71 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR-HEPAVVTLDLGLPPDADGASEGLAALQQILAIA------ 71 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhC------
Confidence 699999999999999988 79999999999999999874 67999999999996 99999999998632
Q ss_pred hhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1159 IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1159 i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+..+.+...+++++|++||+.||++.++|..+|.+.+.
T Consensus 72 ----------------~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 72 ----------------PDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred ----------------CCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 35799999999999999999999999999999999999998877653
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >PRK10360 DNA-binding transcriptional activator UhpA; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=131.01 Aligned_cols=113 Identities=21% Similarity=0.354 Sum_probs=101.1
Q ss_pred EEEEEecChhHHHHHHHHHhhC-CCE-EEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALKKH-GAI-VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~-G~~-V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
+||||||++..+..+...|+.. |+. +..+.++.++++.+. ...||+||+|+.||++||+++++.++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~---------- 71 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP-GRGVQVCICDISMPDISGLELLSQLPK---------- 71 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHcc----------
Confidence 7999999999999999999854 565 568899999999886 467999999999999999999988762
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.+|||++|+....+....++++|+++|+.||++.++|..++.+.+.
T Consensus 72 ---------------~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 72 ---------------GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred ---------------CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 3689999999999999999999999999999999999999988764
|
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-12 Score=152.45 Aligned_cols=117 Identities=29% Similarity=0.479 Sum_probs=107.4
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||||||++..+..+...|+..|+.+..+.++.+|+..+.. ..||+||+|+.||+|||+++++.||+..
T Consensus 6 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-~~~DlvilD~~m~~~~G~~~~~~ir~~~--------- 75 (441)
T PRK10365 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-QVFDLVLCDVRMAEMDGIATLKEIKALN--------- 75 (441)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhhC---------
Confidence 589999999999999999999999999999999999998864 6799999999999999999999999632
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|++...+....++++|+++|+.||++.++|...+.+.+.
T Consensus 76 -------------~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 76 -------------PAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred -------------CCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 25799999999999999999999999999999999999999887653
|
|
| >PRK12555 chemotaxis-specific methylesterase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.5e-12 Score=145.42 Aligned_cols=114 Identities=27% Similarity=0.326 Sum_probs=97.7
Q ss_pred EEEEEecChhHHHHHHHHH-hhCCCEEE-EECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGAL-KKHGAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L-~~~G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
+||||||++..+..+..+| +..|+.+. .+.+|.+|++.+.. ..||+|+||+.||+|||++++++|+..
T Consensus 2 ~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~-~~pDlVllD~~mp~~~G~e~l~~l~~~--------- 71 (337)
T PRK12555 2 RIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA-QPPDVILMDLEMPRMDGVEATRRIMAE--------- 71 (337)
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc-cCCCEEEEcCCCCCCCHHHHHHHHHHH---------
Confidence 7999999999999999999 46688876 78999999998874 679999999999999999999999852
Q ss_pred cCCcccccccCCCCCcccEEEEeccCC--HHhHHHHHHcCCCEEEECCC---------CHHHHHHHHHHHh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVI--QASNEQCMKCGMDDYVSKPF---------EDEQLYTAVARFF 1220 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~--~~~~~~~l~aG~ddyl~KP~---------~~~~L~~~v~r~l 1220 (1223)
.++|||++|+... .+...+++++|+++|+.||+ ..++|...|++..
T Consensus 72 --------------~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 72 --------------RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred --------------CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 1479999998754 55677899999999999999 5677777776653
|
|
| >PRK09935 transcriptional regulator FimZ; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=130.79 Aligned_cols=117 Identities=21% Similarity=0.348 Sum_probs=104.0
Q ss_pred cEEEEEecChhHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKH-GAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~-G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+||||||++..+..+...|+.. ++.+. .+.++.++++.+. ...||+|++|+.||+++|+++++.||...
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l~~~~------- 75 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLR-TRPVDLIIMDIDLPGTDGFTFLKRIKQIQ------- 75 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHhC-------
Confidence 47999999999999999999877 57775 6889999998876 46799999999999999999999998532
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|+....+....++++|+++|+.||++.++|..+|...+.
T Consensus 76 ---------------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~ 122 (210)
T PRK09935 76 ---------------STVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILS 122 (210)
T ss_pred ---------------CCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHc
Confidence 24799999999999999999999999999999999999999987754
|
|
| >PRK09483 response regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=132.26 Aligned_cols=116 Identities=26% Similarity=0.384 Sum_probs=104.6
Q ss_pred EEEEEecChhHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALKKH-GAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~-G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
+||||||++..+..+..+|+.. |+.+. .+.++.++++.+.. ..||+|++|+.||+++|+++++.|++..
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~~~~~l~~~~-------- 73 (217)
T PRK09483 3 NVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT-NAVDVVLMDMNMPGIGGLEATRKILRYT-------- 73 (217)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHHC--------
Confidence 7999999999999999999874 88876 68999999988864 6799999999999999999999998632
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|..........++..|+++|+.||++.++|..++.+++.
T Consensus 74 --------------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~ 120 (217)
T PRK09483 74 --------------PDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHS 120 (217)
T ss_pred --------------CCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 25799999999999999999999999999999999999999988765
|
|
| >PRK11697 putative two-component response-regulatory protein YehT; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=136.38 Aligned_cols=114 Identities=23% Similarity=0.285 Sum_probs=96.8
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCC-E-EEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGA-I-VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~-~-V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+|||+||++..+..+..+|+..|. . +..+.++.+|++.+.. ..||+||+|+.||+|||+++++.++..
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~dlv~lDi~~~~~~G~~~~~~l~~~-------- 72 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR-LKPDVVFLDIQMPRISGLELVGMLDPE-------- 72 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHhccc--------
Confidence 3799999999999999999998883 3 4568899999988764 579999999999999999999888621
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
...+||++|+.. +...++++.|+++||.||++.++|..++.++..
T Consensus 73 ---------------~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 73 ---------------HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred ---------------CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 124688899875 466789999999999999999999999988753
|
|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=99.34 E-value=8e-12 Score=151.53 Aligned_cols=115 Identities=28% Similarity=0.362 Sum_probs=105.8
Q ss_pred EEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCC
Q 000920 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGE 1163 (1223)
Q Consensus 1084 ILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~ 1163 (1223)
||||||++..+..+...|+..|+.+..+.++.+|+..+.. ..||+||+|+.||+|||+++++.||+..
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-~~~DlVllD~~~p~~~g~~ll~~l~~~~----------- 68 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR-GQPDLLITDVRMPGEDGLDLLPQIKKRH----------- 68 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-CCCCEEEEcCCCCCCCHHHHHHHHHHhC-----------
Confidence 6899999999999999999999999999999999998864 6799999999999999999999998632
Q ss_pred cccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1164 ~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..+|||++|+....+...+++++|++||+.||++.++|...+.+.+.
T Consensus 69 -----------~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 115 (463)
T TIGR01818 69 -----------PQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALA 115 (463)
T ss_pred -----------CCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHH
Confidence 25799999999999999999999999999999999999999988654
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-12 Score=162.03 Aligned_cols=395 Identities=23% Similarity=0.248 Sum_probs=277.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000920 612 KARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQM-LMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEP 690 (1223)
Q Consensus 612 k~~ae~a~~aKs~FLA~vSHELRTPLn~IlG~lel-L~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l 690 (1223)
+.++..+..+...++..++|..|+|++++++.+.. +.+..+...+.-.+++..++...+..+++.-.|.++...|....
T Consensus 376 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~ 455 (786)
T KOG0519|consen 376 KEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLG 455 (786)
T ss_pred hhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCccc
Confidence 44445555666778888889999999999999874 44445556666667777888888999999999999988888788
Q ss_pred ceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHh--ccCCCCeEEEEEEEccC
Q 000920 691 EFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIK--FTQDKGHIFVSVHLADD 768 (1223)
Q Consensus 691 ~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIK--fT~~~G~I~V~v~~~~~ 768 (1223)
+...+.+..++.............+...+.+.+....|..+.+|..++.|++.+..+++.+ ++..+......+.....
T Consensus 456 ~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 535 (786)
T KOG0519|consen 456 ESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAELL 535 (786)
T ss_pred chhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEeccc
Confidence 8889999999999999988888788888888888888888899999999999999999999 88665543344433211
Q ss_pred ccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhh
Q 000920 769 VRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVR 848 (1223)
Q Consensus 769 ~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~r 848 (1223)
.. ..+.. . .-.+.-|.... ......+.+.+++++.|+....++.
T Consensus 536 ~~-~vd~~---------------------~-----~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~s~ 579 (786)
T KOG0519|consen 536 GI-SVDVS---------------------L-----SLSLAFWFLDL---------SLSDLEVCKQIEDNEEGSNNGDISS 579 (786)
T ss_pred Cc-ccccc---------------------c-----cchhhhhhccc---------ccccchheEEeeeccccccCCCcch
Confidence 00 00000 0 00001111000 0011256789999999999988888
Q ss_pred hcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEE-eCCCe----EEEEEEEEecc---CCcCCCCCCcccccC
Q 000920 849 IFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS-EPGTG----STFSFTVTFTE---GERNSLDPKWQQYVP 920 (1223)
Q Consensus 849 LFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S-~~g~G----StF~f~Lpl~~---~~~~~~~~~~~~~~~ 920 (1223)
.+..|.+....+++...+.+++++.|.+..+.++|.+++.- ..+.. +.+.+..-... ....+.+++......
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 659 (786)
T KOG0519|consen 580 SNPLHKSLRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAEPR 659 (786)
T ss_pred hhhhhhccccchhhcccccccccccchhhHHhhhcccccccccccCCccHHHHHHhhccccccccccccCCCcccccCcc
Confidence 88888877766666557889999999999999999998852 11110 01111110000 001111111112222
Q ss_pred CcccccCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHH
Q 000920 921 DVSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYM 1000 (1223)
Q Consensus 921 ~~~~~~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~ 1000 (1223)
....++|.++|+|||+.++..+...+|+.+|..+..++|+.+|+..+.. ...++++++|.+++.-+.-. .
T Consensus 660 ~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~------~~~y~~ifmD~qMP~mDG~e----~ 729 (786)
T KOG0519|consen 660 DSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP------PHSYDVIFMDLQMPEMDGYE----A 729 (786)
T ss_pred ccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC------CCcccEEEEEcCCcccchHH----H
Confidence 4455789999999999999999999999999999999999999998873 35689999999887654321 2
Q ss_pred HHHHHhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1001 LKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1001 ~~~~~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.+++|.... ..+|.+.+. .+..+....+....|...|+.||+....|..+++
T Consensus 730 ~~~irk~~~----~~~pIvAlT-a~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~ 781 (786)
T KOG0519|consen 730 TREIRKKER----WHLPIVALT-ADADPSTEEECLEVGMDGYLSKPFTLEKLVKILR 781 (786)
T ss_pred HHHHHHhhc----CCCCEEEEe-cCCcHHHHHHHHHhCCceEEcccccHHHHHHHHH
Confidence 233333322 245555444 4567777888889999999999998777766554
|
|
| >COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.6e-12 Score=124.41 Aligned_cols=114 Identities=22% Similarity=0.319 Sum_probs=105.3
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
+..|+|||+......+...+++.||.|..|.+.+||+..++. ..|...+.|+.|-+-+|+++++.||+..
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art-~~PayAvvDlkL~~gsGL~~i~~lr~~~--------- 79 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART-APPAYAVVDLKLGDGSGLAVIEALRERR--------- 79 (182)
T ss_pred ceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc-CCCceEEEEeeecCCCchHHHHHHHhcC---------
Confidence 368999999999999999999999999999999999999874 6799999999999999999999999743
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHH
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r 1218 (1223)
.+..||++|++....+..++.+.|+++|+.||-+.+++..++.+
T Consensus 80 -------------~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 80 -------------ADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred -------------CcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 25689999999999999999999999999999999999988765
|
|
| >PRK10710 DNA-binding transcriptional regulator BaeR; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=132.47 Aligned_cols=116 Identities=22% Similarity=0.382 Sum_probs=105.7
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||+|||++..+..+...|+..|+.+..+.++.+|+..+. ...||+|++|+.||.++|+++++.||..
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~---------- 79 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVR-QTPPDLILLDLMLPGTDGLTLCREIRRF---------- 79 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 38999999999999999999999999999999999999886 4679999999999999999999999841
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+.........++++|++||+.||++.++|...+...+.
T Consensus 80 -------------~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 80 -------------SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred -------------CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 24799999999999999999999999999999999999998887654
|
|
| >PRK15479 transcriptional regulatory protein TctD; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-11 Score=128.54 Aligned_cols=116 Identities=31% Similarity=0.470 Sum_probs=105.3
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||++||++..+..+...|...|+.+.++.++.++++.+.. ..||+|++|+.||+++|+++++.||...
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~d~vild~~~~~~~~~~~~~~i~~~~---------- 70 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS-EMYALAVLDINMPGMDGLEVLQRLRKRG---------- 70 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-CCCCEEEEeCCCCCCcHHHHHHHHHhcC----------
Confidence 69999999999999999999999999999999999987763 6799999999999999999999998532
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+...+++++|+++|+.||++.++|...+...+.
T Consensus 71 ------------~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 71 ------------QTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred ------------CCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 25799999999999999999999999999999999999999887654
|
|
| >TIGR01052 top6b DNA topoisomerase VI, B subunit | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.9e-11 Score=142.04 Aligned_cols=112 Identities=26% Similarity=0.438 Sum_probs=87.7
Q ss_pred EEeCHHHHHHHHHHHHHHHHhccCCCC---eEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCcccccc
Q 000920 731 VIGDPGRFRQIITNLVGNSIKFTQDKG---HIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRW 807 (1223)
Q Consensus 731 v~gD~~rL~QIL~NLLsNAIKfT~~~G---~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~ 807 (1223)
+.+|...|.|++.||++||++|+...| .|.|.+...+
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g---------------------------------------- 61 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIG---------------------------------------- 61 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECC----------------------------------------
Confidence 446899999999999999999996555 4655553211
Q ss_pred ccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCC--CCCCCCcccHHHHHHHHHHHcCCE-
Q 000920 808 KSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST--SRTYGGTGIGLSISRCLVELMGGE- 884 (1223)
Q Consensus 808 ~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~st--sr~~gGTGLGLsI~k~LVelmgG~- 884 (1223)
...+.|+|+|+|+||+++.++++|++|+..+... ....||.|+||++++.++++|+|.
T Consensus 62 -------------------~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~ 122 (488)
T TIGR01052 62 -------------------KDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKP 122 (488)
T ss_pred -------------------CceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCce
Confidence 0136799999999999999999999998765432 234579999999999999999998
Q ss_pred EEEEEeCCCeEEEEEEEE
Q 000920 885 IGFVSEPGTGSTFSFTVT 902 (1223)
Q Consensus 885 I~v~S~~g~GStF~f~Lp 902 (1223)
+.+.|..+ |+.|...+.
T Consensus 123 i~V~S~~~-g~~~~~~~~ 139 (488)
T TIGR01052 123 VKVISSTG-GEIYVYKMK 139 (488)
T ss_pred EEEEEecC-CceEEEEEE
Confidence 99999886 666633333
|
This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase). |
| >PRK09390 fixJ response regulator FixJ; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.5e-11 Score=125.50 Aligned_cols=117 Identities=28% Similarity=0.407 Sum_probs=105.8
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||||||++..+..+...|...|+.+..+.++.++++.+.. ..||+|++|+.||.++|+++++.||...
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~d~ii~d~~~~~~~~~~~~~~l~~~~--------- 73 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG-LRFGCVVTDVRMPGIDGIELLRRLKARG--------- 73 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc-CCCCEEEEeCCCCCCcHHHHHHHHHhcC---------
Confidence 579999999999999999999999999999999999988764 6799999999999999999999998532
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+....+....++++|+++|+.||++.++|...+...+.
T Consensus 74 -------------~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~ 120 (202)
T PRK09390 74 -------------SPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred -------------CCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999888876554
|
|
| >PRK09581 pleD response regulator PleD; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.1e-11 Score=141.41 Aligned_cols=117 Identities=27% Similarity=0.413 Sum_probs=106.6
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
+||+|||++..+..+...|...|+.+..+.++.+|+..+.. ..||+|++|+.||+++|+++++.||+...
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~g~~l~~~i~~~~~--------- 73 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER-EQPDIILLDVMMPGMDGFEVCRRLKSDPA--------- 73 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh-cCCCEEEEeCCCCCCCHHHHHHHHHcCcc---------
Confidence 79999999999999999999999999999999999998864 67999999999999999999999986321
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
...+|||++|+....+...+++++|+++|+.||++.++|..++.+.+
T Consensus 74 -----------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~ 120 (457)
T PRK09581 74 -----------TTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLT 120 (457)
T ss_pred -----------cCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 23589999999999999999999999999999999999999888764
|
|
| >PRK14868 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.9e-11 Score=145.70 Aligned_cols=131 Identities=19% Similarity=0.280 Sum_probs=90.5
Q ss_pred HhcCcEEEEEecCCCCce-EEeCHHHHHHHHHHHHHHHHhccCCCC---eEEEEEEEccCccccccchhhhhhhhccccc
Q 000920 713 NQKGIELAIYVSDRVPEV-VIGDPGRFRQIITNLVGNSIKFTQDKG---HIFVSVHLADDVRSKVDVKDKVLEKSLNSVQ 788 (1223)
Q Consensus 713 ~~k~I~l~v~v~~~~p~~-v~gD~~rL~QIL~NLLsNAIKfT~~~G---~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~ 788 (1223)
..+.+.+...+..+.+.. +-.|...|.+++.|||+||++|+..+| .|.|.+...+
T Consensus 21 ~~~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g--------------------- 79 (795)
T PRK14868 21 SQREISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEEVG--------------------- 79 (795)
T ss_pred hccccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEECC---------------------
Confidence 457788877776554321 223577899999999999999997655 4666553211
Q ss_pred ccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCC----CCCCCC
Q 000920 789 HKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS----STSRTY 864 (1223)
Q Consensus 789 ~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~----stsr~~ 864 (1223)
..+.|.|+|+|+||++++++++|+||++.+. ..++..
T Consensus 80 ---------------------------------------~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~ 120 (795)
T PRK14868 80 ---------------------------------------DYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQ 120 (795)
T ss_pred ---------------------------------------CEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCC
Confidence 1478999999999999999999999986542 123344
Q ss_pred CCcccHHHHHHHHHHHcCCEEEEEEeCCC-eEEEEEEEEec
Q 000920 865 GGTGIGLSISRCLVELMGGEIGFVSEPGT-GSTFSFTVTFT 904 (1223)
Q Consensus 865 gGTGLGLsI~k~LVelmgG~I~v~S~~g~-GStF~f~Lpl~ 904 (1223)
.|.||||+++...+ .+||.|.+.|..+. +..+.+.|.+.
T Consensus 121 rG~GLglai~~sql-t~GgpI~I~S~~~~~~~g~~~~L~Id 160 (795)
T PRK14868 121 QGIGISAAVLYSQL-TSGKPAKITSRTQGSEEAQYFELIID 160 (795)
T ss_pred CceehHHHHHHHHH-cCCCcEEEEeCCCCCCceeEEEEEEe
Confidence 56666666666666 36888999998754 33333444443
|
|
| >PRK00742 chemotaxis-specific methylesterase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7e-11 Score=138.64 Aligned_cols=104 Identities=29% Similarity=0.411 Sum_probs=90.5
Q ss_pred cEEEEEecChhHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKH-GAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~-G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+||||||++.++..+..+|... |+.+. .+.++.+|++.+.. ..||+|++|+.||+|||++++++||+..
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~-~~~DlVllD~~mp~~dgle~l~~i~~~~------- 75 (354)
T PRK00742 4 IRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK-LNPDVITLDVEMPVMDGLDALEKIMRLR------- 75 (354)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh-hCCCEEEEeCCCCCCChHHHHHHHHHhC-------
Confidence 48999999999999999999876 88877 88999999998764 6799999999999999999999998531
Q ss_pred hcCCcccccccCCCCCcccEEEEeccC--CHHhHHHHHHcCCCEEEECCCCH
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADV--IQASNEQCMKCGMDDYVSKPFED 1209 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~--~~~~~~~~l~aG~ddyl~KP~~~ 1209 (1223)
.+|||++|+.. ..+...+++++|++||+.||++.
T Consensus 76 ----------------~~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~ 111 (354)
T PRK00742 76 ----------------PTPVVMVSSLTERGAEITLRALELGAVDFVTKPFLG 111 (354)
T ss_pred ----------------CCCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCccc
Confidence 27999999864 34667789999999999999953
|
|
| >PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-11 Score=106.91 Aligned_cols=66 Identities=41% Similarity=0.734 Sum_probs=62.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhc-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMD-TELDAAQ-LDYAQTAHNSGKDLISLINDVLDQAKIESG 686 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~-~~l~~~q-~~~l~~i~~s~~~Ll~LIndlLD~sKiesg 686 (1223)
+|++|++++||||||||++|.++++++.. ...++++ ++++..+..+++++..+|+++++++|+++|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 47899999999999999999999999999 8888888 899999999999999999999999999987
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A .... |
| >PRK10100 DNA-binding transcriptional regulator CsgD; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=126.93 Aligned_cols=114 Identities=10% Similarity=0.081 Sum_probs=93.0
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHH-HHHHhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQAT-WQIRHLENEINEQI 1159 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eat-r~IR~~e~~~~~~i 1159 (1223)
..++++|||++..+..++.+|+..--.+..+.++.+|++.+. .||+||||+.||++||++++ +.||...
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~---~~DvvllDi~~p~~~G~~~~~~~i~~~~------- 79 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSRKN------- 79 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC---CCCEEEEECCCCCccHHHHHHHHHHHhC-------
Confidence 347999999999999999999844334567789999998643 39999999999999999997 5677532
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHH--cCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK--CGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~--aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+.... ...++. +|+++|+.|+.+.++|.++|+..+.
T Consensus 80 ---------------p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~ 126 (216)
T PRK10100 80 ---------------NNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred ---------------CCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHc
Confidence 25799999998663 334455 5999999999999999999987764
|
|
| >COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-09 Score=115.62 Aligned_cols=177 Identities=16% Similarity=0.219 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHH
Q 000920 272 FVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQ----FNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGE 347 (1223)
Q Consensus 272 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~d~~a~~lq~~----~~~~~~~~~aL~~l~~~~~~~~~~~~vd~~~F~~ 347 (1223)
-.++|++++++...+.|.....--++.+.+...+.+..++.| +|.++..|..|+... +..|++.|+.|+.
T Consensus 20 Pali~~~i~vv~sv~~~~~~~~~~qe~lrq~v~~~l~~ir~qLE~qlNg~I~~vkgl~~~~------e~~P~~~Q~qw~~ 93 (297)
T COG3452 20 PALIGAVILVVVSVHAWLQLRRVSQERLRQLVKQQLNIIRTQLETQLNGNIQLVKGLGKHW------ETEPDMPQQQWEL 93 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhe------ecCCCchHHHhHH
Confidence 334555555555555555544444455555555555555554 555555555555555 3467799999999
Q ss_pred HHHHhhhcCCCccceeeccccCchhHHHHHHHhccceeeeccccccccccCCCCCCCCCCCCCccceeeeccccccceee
Q 000920 348 YTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVS 427 (1223)
Q Consensus 348 ~t~~~~~~~p~i~gv~~~~~V~~~eR~~fE~~~~~~i~~~~~~~~~i~~~~~~~~~~p~~~r~~Y~Pvi~~~~~~~~~~g 427 (1223)
-+......+.+.+.++=+| +|++ --.|+-|.+..++|
T Consensus 94 lA~a~~e~~~~lr~I~vaP--------------~~VV-----------------------------~~~yPl~~neaa~g 130 (297)
T COG3452 94 LARAVFEDYDGLRNIAVAP--------------SLVV-----------------------------ARVYPLPGNEAAIG 130 (297)
T ss_pred HHHHHhhccccceeeccCc--------------ccEE-----------------------------EEEeecCCChhhcC
Confidence 9888777777776666331 1122 12466677888899
Q ss_pred eccCCChhhHHHHHHHHHcCCcccccceeecccCCceEEEEEEeeccCCCCCCCHHHHHHhhheEEEEeeehHHHHHHH
Q 000920 428 IDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKL 506 (1223)
Q Consensus 428 ~Dm~s~~~rr~ai~~Ar~tg~~~lt~p~~L~~~~~~G~~l~~pvy~~~~~~~~~~~~r~~a~~G~v~~~~~v~~l~~~~ 506 (1223)
+|+..+|.-+.++.+||+.++.++|+|+.|+| ++.|++..+|+|.. .|.+ ..++|+|.++||++.|.+..
T Consensus 131 LDYrk~pqQ~~s~~~A~~~k~tvvsGpVDL~Q-GgRgfi~rvPlf~g-p~~~-------dRFwGvVs~V~dvDqL~~s~ 200 (297)
T COG3452 131 LDYRKNPQQRQSTSRARRQKETVVSGPVDLVQ-GGRGFIGRVPLFMG-PPGG-------DRFWGVVSGVFDVDQLYESV 200 (297)
T ss_pred cchhcCHHHHHHHHHHHhhcceEEecceeecc-CCceEEEEEeeeeC-CCCC-------CccceEEEEEEEHHHHHHHh
Confidence 99999999999999999999999999999997 55699999999953 2222 23899999999999998876
|
|
| >PRK10610 chemotaxis regulatory protein CheY; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.9e-10 Score=107.31 Aligned_cols=120 Identities=30% Similarity=0.428 Sum_probs=105.3
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCC-EEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGA-IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~-~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
..+||++||++.....+...|+..|+ .+..+.++.+++..+. ...||++++|..+|.++|+++.+.+++...
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~di~l~d~~~~~~~~~~~~~~l~~~~~------ 77 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGFGFVISDWNMPNMDGLELLKTIRADGA------ 77 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhh-ccCCCEEEEcCCCCCCCHHHHHHHHHhCCC------
Confidence 35899999999999999999999998 4888999999998876 467999999999999999999999986321
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
..++|+++++..........+++.|+++|+.||++.++|...+.+.+.
T Consensus 78 --------------~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~ 125 (129)
T PRK10610 78 --------------MSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 125 (129)
T ss_pred --------------cCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHH
Confidence 235799999998888889999999999999999999999999988764
|
|
| >PRK11475 DNA-binding transcriptional activator BglJ; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=125.84 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=88.6
Q ss_pred HHHHHHHHhh---CCCEEEEECCHHHHHHHhCCCCCccEEE---EeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccc
Q 000920 1094 RRVAEGALKK---HGAIVTCVDCGRAAVDKLTPPHNFDACF---MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAE 1167 (1223)
Q Consensus 1094 ~~vl~~~L~~---~G~~V~~a~~G~eAl~~l~~~~~~DlIl---mDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~ 1167 (1223)
|..+..+|+. .|+.+.++.++.++++.+.. ..||+++ +|+.||+|||++++++||+..
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~-~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~--------------- 66 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR-ISFSAVIFSLSAMRSERREGLSCLTELAIKF--------------- 66 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc-CCCCEEEeeccccCCCCCCHHHHHHHHHHHC---------------
Confidence 5567777865 57778899999999998764 5789998 788999999999999998642
Q ss_pred cccCCCCCcccEEEEeccCCHHhHHHHH-HcCCCEEEECCCCHHHHHHHHHHHhhc
Q 000920 1168 MFGNVGLWHVPILAMTADVIQASNEQCM-KCGMDDYVSKPFEDEQLYTAVARFFMS 1222 (1223)
Q Consensus 1168 ~~~~~~~~~iPIIalTA~~~~~~~~~~l-~aG~ddyl~KP~~~~~L~~~v~r~l~~ 1222 (1223)
+++|||++|+.........++ ++|+++||.||++.++|..+|+..+..
T Consensus 67 -------p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 67 -------PRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG 115 (207)
T ss_pred -------CCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCC
Confidence 357999999987776666655 799999999999999999999987653
|
|
| >cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-10 Score=106.78 Aligned_cols=71 Identities=55% Similarity=0.827 Sum_probs=59.6
Q ss_pred EEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEE
Q 000920 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901 (1223)
Q Consensus 829 ~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~L 901 (1223)
.+.|.|.|+|.|+++..+.++|.+|.. .......++.|+||++|+.+++.|||++++.+..+.|++|++.+
T Consensus 33 ~~~v~i~d~g~g~~~~~~~~~~~~~~~--~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 33 HLEIRVEDNGPGIPEEDLERIFERFSD--GSRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred EEEEEEEeCCCCCCHHHHHHHhhhhhc--CCCCCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 478999999999999999999998821 12223446899999999999999999999999988899998753
|
|
| >PRK15369 two component system sensor kinase SsrB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.3e-10 Score=118.69 Aligned_cols=117 Identities=22% Similarity=0.232 Sum_probs=102.8
Q ss_pred cEEEEEecChhHHHHHHHHHhhC-CCEE-EEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKH-GAIV-TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~-G~~V-~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+||+|||++..+..+...|... ++.+ ..+.++.++++.+. ...||+|++|+.||.++|+++++.+|+..
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~~~~~~~~l~~~~------- 75 (211)
T PRK15369 4 YKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACR-QLEPDIVILDLGLPGMNGLDVIPQLHQRW------- 75 (211)
T ss_pred cEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHC-------
Confidence 57999999999999999999876 4664 47889999998775 46799999999999999999999998632
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+.........++.+|+++|+.||++.++|...+.+.+.
T Consensus 76 ---------------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 122 (211)
T PRK15369 76 ---------------PAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAV 122 (211)
T ss_pred ---------------CCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 25799999999999999999999999999999999999999987654
|
|
| >COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=133.75 Aligned_cols=103 Identities=28% Similarity=0.474 Sum_probs=91.1
Q ss_pred cEEEEEecChhHHHHHHHHHhhCC--CEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHG--AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G--~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.|||||||....|++++.+|...| ..|-.+.||.+|++++.. ..||+|.||+.||.|||++++++|-+.
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~-~~PDVi~ld~emp~mdgl~~l~~im~~-------- 72 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK-LKPDVITLDVEMPVMDGLEALRKIMRL-------- 72 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh-cCCCEEEEecccccccHHHHHHHHhcC--------
Confidence 389999999999999999999999 678889999999999974 789999999999999999999988742
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCC--HHhHHHHHHcCCCEEEECCCC
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVI--QASNEQCMKCGMDDYVSKPFE 1208 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~--~~~~~~~l~aG~ddyl~KP~~ 1208 (1223)
..+|||++++-.. .+...+|++.|+-||+.||..
T Consensus 73 ---------------~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 73 ---------------RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred ---------------CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 3689999988544 566678999999999999984
|
|
| >PRK10651 transcriptional regulator NarL; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.4e-10 Score=119.85 Aligned_cols=117 Identities=21% Similarity=0.304 Sum_probs=103.2
Q ss_pred cEEEEEecChhHHHHHHHHHhhC-CCEE-EEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKH-GAIV-TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~-G~~V-~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+||||||++..+..+...|... ++.+ ..+.++.+++..+.. ..||+|++|+.||+++|+++++.|+...
T Consensus 7 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvl~d~~l~~~~~~~~~~~l~~~~------- 78 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-LDPDLILLDLNMPGMNGLETLDKLREKS------- 78 (216)
T ss_pred eEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh-CCCCEEEEeCCCCCCcHHHHHHHHHHhC-------
Confidence 58999999999999999999875 5654 468899999998864 6799999999999999999999998632
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|+|++|+....+....++++|+++|+.||++.++|...+.+.+.
T Consensus 79 ---------------~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~ 125 (216)
T PRK10651 79 ---------------LSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAA 125 (216)
T ss_pred ---------------CCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 24699999999999999999999999999999999999999988764
|
|
| >PRK13558 bacterio-opsin activator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=147.05 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=101.4
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
.+||||||++.++..+..+|...|+.+..+.++.+|+..+. ...||+||+|+.||+|||++++++||...
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~-~~~~Dlvl~d~~lp~~~g~~~l~~l~~~~--------- 77 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVE-AGEIDCVVADHEPDGFDGLALLEAVRQTT--------- 77 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhh-ccCCCEEEEeccCCCCcHHHHHHHHHhcC---------
Confidence 47999999999999999999999999999999999999886 46799999999999999999999998632
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHH--HHHHHHHHH
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDE--QLYTAVARF 1219 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~--~L~~~v~r~ 1219 (1223)
..+|||++|+..+.+...+++++|++||+.||.+.. .+..++.+.
T Consensus 78 -------------~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~ 124 (665)
T PRK13558 78 -------------AVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESA 124 (665)
T ss_pred -------------CCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHh
Confidence 257999999999999999999999999999998643 555555543
|
|
| >PRK10403 transcriptional regulator NarP; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.8e-10 Score=119.28 Aligned_cols=117 Identities=25% Similarity=0.270 Sum_probs=102.5
Q ss_pred cEEEEEecChhHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKK-HGAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~-~G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+||||||++..+..+...|+. .++.+. .+.++.+++..+.. ..||+|++|+.||.++|+++++.+++..
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~d~~~~~~~~~~~~~~l~~~~------- 78 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR-LDPDVILLDLNMKGMSGLDTLNALRRDG------- 78 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh-cCCCEEEEecCCCCCcHHHHHHHHHHhC-------
Confidence 4799999999999999999975 577775 68899999988763 6799999999999999999999998632
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|++++|..........++++|+++|+.||++.++|...+.+.+.
T Consensus 79 ---------------~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 79 ---------------VTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred ---------------CCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 24689999999888899999999999999999999999999987543
|
|
| >PRK13435 response regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5e-10 Score=113.63 Aligned_cols=114 Identities=15% Similarity=0.167 Sum_probs=97.9
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCEEE-EECCHHHHHHHhCCCCCccEEEEeCCCC-CCCHHHHHHHHHhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQMP-EMDGFQATWQIRHLENEINEQ 1158 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~MP-~MDG~eatr~IR~~e~~~~~~ 1158 (1223)
..+|||+||++.....+...|+..|+.+. .++++.++++.+.. ..||+|++|+.|| .++|.++.+.++..
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~dliivd~~~~~~~~~~~~~~~l~~~------- 76 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR-RQPDVALVDVHLADGPTGVEVARRLSAD------- 76 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh-cCCCEEEEeeecCCCCcHHHHHHHHHhC-------
Confidence 35899999999999999999999999977 78999999987753 5799999999998 59999999888741
Q ss_pred hhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1159 IASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1159 i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
.++|||++|+... ...++.+|+++|+.||++.++|...|.+...
T Consensus 77 ----------------~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 120 (145)
T PRK13435 77 ----------------GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSA 120 (145)
T ss_pred ----------------CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHh
Confidence 1579999997643 3567889999999999999999999988764
|
|
| >TIGR01925 spIIAB anti-sigma F factor | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-10 Score=115.04 Aligned_cols=99 Identities=18% Similarity=0.360 Sum_probs=78.0
Q ss_pred eCHHHHHHHHHHHHHHHHhccC---CCCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCcccccccc
Q 000920 733 GDPGRFRQIITNLVGNSIKFTQ---DKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKS 809 (1223)
Q Consensus 733 gD~~rL~QIL~NLLsNAIKfT~---~~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~ 809 (1223)
.|...+.+++.|+++||++|.. .++.|.|.+...++
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~----------------------------------------- 73 (137)
T TIGR01925 35 EELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDH----------------------------------------- 73 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCC-----------------------------------------
Confidence 3667899999999999999862 35677776653221
Q ss_pred ccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEE
Q 000920 810 WENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889 (1223)
Q Consensus 810 w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S 889 (1223)
.+.++|.|+|.||++ .+++|+||+..+. ..+|+|+||++++++ .+++.+++
T Consensus 74 -------------------~~~i~I~D~G~gi~~--~~~~~~~~~~~~~----~~~~~GlGL~lv~~~----~~~l~~~~ 124 (137)
T TIGR01925 74 -------------------EVYITVRDEGIGIEN--LEEAREPLYTSKP----ELERSGMGFTVMENF----MDDVSVDS 124 (137)
T ss_pred -------------------EEEEEEEEcCCCcCc--hhHhhCCCcccCC----CCCCCcccHHHHHHh----CCcEEEEE
Confidence 578999999999983 6789999986543 235899999998874 57999999
Q ss_pred eCCCeEEEEEEE
Q 000920 890 EPGTGSTFSFTV 901 (1223)
Q Consensus 890 ~~g~GStF~f~L 901 (1223)
.+++|++|+++.
T Consensus 125 ~~~~Gt~v~i~~ 136 (137)
T TIGR01925 125 EKEKGTKIIMKK 136 (137)
T ss_pred CCCCCeEEEEEe
Confidence 999999998763
|
This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA. |
| >PRK14867 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=140.80 Aligned_cols=115 Identities=24% Similarity=0.415 Sum_probs=89.6
Q ss_pred EeCHHHHH---HHHHHHHHHHHhccCCCC---eEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCcccc
Q 000920 732 IGDPGRFR---QIITNLVGNSIKFTQDKG---HIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVD 805 (1223)
Q Consensus 732 ~gD~~rL~---QIL~NLLsNAIKfT~~~G---~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~ 805 (1223)
.|++..++ +++.||++||++|+...| .|.|.+...+
T Consensus 28 lGf~~~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g-------------------------------------- 69 (659)
T PRK14867 28 LGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLG-------------------------------------- 69 (659)
T ss_pred eechhHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECC--------------------------------------
Confidence 45555555 999999999999986544 5666554211
Q ss_pred ccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCC--CCCCCCcccHHHHHHHHHHHc-C
Q 000920 806 RWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST--SRTYGGTGIGLSISRCLVELM-G 882 (1223)
Q Consensus 806 ~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~st--sr~~gGTGLGLsI~k~LVelm-g 882 (1223)
...+.|+|+|+|+|||++.++++|++|+..+.-. ....|+.|+||+++..+.+.+ |
T Consensus 70 ---------------------~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G 128 (659)
T PRK14867 70 ---------------------SDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTG 128 (659)
T ss_pred ---------------------CcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcC
Confidence 1147799999999999999999999998543211 134578999999999999886 5
Q ss_pred CEEEEEEeCCCeEEEEEEEEecc
Q 000920 883 GEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 883 G~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
|.|.+.|.++.|++|++.+|+..
T Consensus 129 ~pI~I~S~~g~G~~f~i~L~i~i 151 (659)
T PRK14867 129 KPLKITTSTGDGKIHEMEIKMSV 151 (659)
T ss_pred CcEEEEEEcCCCEEEEEEEEEEe
Confidence 56999999999999999998854
|
|
| >COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-08 Score=127.90 Aligned_cols=142 Identities=27% Similarity=0.461 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHh--cCcEEEEEecCCCCceEEeCHHHHHHH---HHHHHHHHHhcc------------CCCCeEE
Q 000920 698 HDVLDNVLSLFSSKANQ--KGIELAIYVSDRVPEVVIGDPGRFRQI---ITNLVGNSIKFT------------QDKGHIF 760 (1223)
Q Consensus 698 ~~ll~~vl~~f~~~a~~--k~I~l~v~v~~~~p~~v~gD~~rL~QI---L~NLLsNAIKfT------------~~~G~I~ 760 (1223)
..++...-.+.+..+.. |.++|.+.-.+ ..-|..-+.++ |++||.||+.|. ++.|.|.
T Consensus 393 ~~vf~RfpR~VRdla~~lgK~V~L~ieG~~-----telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~ 467 (716)
T COG0643 393 EQVFSRFPRMVRDLARKLGKQVELVIEGED-----TELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTIT 467 (716)
T ss_pred HHHHhhccHHHHHHHHHhCCeeEEEEecCC-----eeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEE
Confidence 34444444444444443 55666554322 23477777776 799999999994 3457777
Q ss_pred EEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCC
Q 000920 761 VSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVG 840 (1223)
Q Consensus 761 V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiG 840 (1223)
++..... ..+.|+|+|.|.|
T Consensus 468 L~A~~~g------------------------------------------------------------n~ivIev~DDG~G 487 (716)
T COG0643 468 LSAYHEG------------------------------------------------------------NNIVIEVSDDGAG 487 (716)
T ss_pred EEEEcCC------------------------------------------------------------CeEEEEEeeCCCC
Confidence 7664322 1688999999999
Q ss_pred CCHHh------------------------HhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEE
Q 000920 841 IPLEA------------------------QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGST 896 (1223)
Q Consensus 841 I~~e~------------------------~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GSt 896 (1223)
|+.+. ..-||.|-|.+... -..-.|-|.||=+||.-++.+||.|.|+|++|+||+
T Consensus 488 id~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~-VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~ 566 (716)
T COG0643 488 IDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQ-VTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTT 566 (716)
T ss_pred CCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcchh-hhcccCCccCHHHHHHHHHHcCCEEEEEecCCCCeE
Confidence 99653 44589996643322 234579999999999999999999999999999999
Q ss_pred EEEEEEecc
Q 000920 897 FSFTVTFTE 905 (1223)
Q Consensus 897 F~f~Lpl~~ 905 (1223)
|++.||++.
T Consensus 567 Fti~LPLTL 575 (716)
T COG0643 567 FTIRLPLTL 575 (716)
T ss_pred EEEecCcHH
Confidence 999999974
|
|
| >PRK09191 two-component response regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-09 Score=120.77 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=97.3
Q ss_pred cEEEEEecChhHHHHHHHHHhhCCCEEE-EECCHHHHHHHhCCCCCccEEEEeCCCCC-CCHHHHHHHHHhhhhhhhhhh
Q 000920 1082 KQILVVDDNMVNRRVAEGALKKHGAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQMPE-MDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1082 ~rILVVDDn~~n~~vl~~~L~~~G~~V~-~a~~G~eAl~~l~~~~~~DlIlmDi~MP~-MDG~eatr~IR~~e~~~~~~i 1159 (1223)
.+||++||++..+..+...|+..|+.+. .+.++.++++.+.. ..||+||+|+.||+ +||+++++.++..
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~-~~~dlvi~d~~~~~~~~g~e~l~~l~~~-------- 208 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK-TRPGLILADIQLADGSSGIDAVNDILKT-------- 208 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc-cCCCEEEEecCCCCCCCHHHHHHHHHHh--------
Confidence 4799999999999999999999999987 78899999998864 67999999999995 8999999988852
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
. ++|||++|+....... +...|+++|+.||++.++|...|.+...
T Consensus 209 --------------~-~~pii~ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~ 253 (261)
T PRK09191 209 --------------F-DVPVIFITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred --------------C-CCCEEEEeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHHh
Confidence 1 5799999997665433 3456789999999999999999988653
|
|
| >COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.4e-10 Score=115.68 Aligned_cols=113 Identities=26% Similarity=0.310 Sum_probs=93.5
Q ss_pred CcEEEEEecChhHHHHHHHHHhhCCCE-EEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhh
Q 000920 1081 GKQILVVDDNMVNRRVAEGALKKHGAI-VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQI 1159 (1223)
Q Consensus 1081 ~~rILVVDDn~~n~~vl~~~L~~~G~~-V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i 1159 (1223)
..++|++||++.++..+...|...||. |.++.+|.++.+... .+.||+||||+.||.-|-.+... +...
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~-~~~pDvVildie~p~rd~~e~~~-~~~~-------- 74 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCE-RLQPDVVILDIEMPRRDIIEALL-LASE-------- 74 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHH-hcCCCEEEEecCCCCccHHHHHH-Hhhc--------
Confidence 358999999999999999999999985 667778888888765 47899999999999999333322 2210
Q ss_pred hcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 000920 1160 ASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217 (1223)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~ 1217 (1223)
....|||++|++.+++..+.+.++|+.+||.||++...|+..+.
T Consensus 75 --------------~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~ 118 (194)
T COG3707 75 --------------NVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILD 118 (194)
T ss_pred --------------CCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHH
Confidence 12468999999999999999999999999999999998876653
|
|
| >PRK03660 anti-sigma F factor; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-09 Score=110.24 Aligned_cols=103 Identities=21% Similarity=0.420 Sum_probs=80.3
Q ss_pred eCHHHHHHHHHHHHHHHHhccCC---CCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCcccccccc
Q 000920 733 GDPGRFRQIITNLVGNSIKFTQD---KGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKS 809 (1223)
Q Consensus 733 gD~~rL~QIL~NLLsNAIKfT~~---~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~ 809 (1223)
.|...+.+++.|++.||++|... ++.|.|.+...+
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~------------------------------------------ 72 (146)
T PRK03660 35 EELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEE------------------------------------------ 72 (146)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECC------------------------------------------
Confidence 36778999999999999998632 256666654321
Q ss_pred ccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEE
Q 000920 810 WENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889 (1223)
Q Consensus 810 w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S 889 (1223)
..+.++|.|+|.||++ ..++|+||++.+.. .+++|+||+|+++ +.+++.+++
T Consensus 73 ------------------~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~----~~~~GlGL~i~~~----~~~~i~~~~ 124 (146)
T PRK03660 73 ------------------EELEITVRDEGKGIED--IEEAMQPLYTTKPE----LERSGMGFTVMES----FMDEVEVES 124 (146)
T ss_pred ------------------CEEEEEEEEccCCCCh--HHHhhCCCcccCCC----CCCccccHHHHHH----hCCeEEEEe
Confidence 1578999999999986 56899999864432 2478999999875 456899999
Q ss_pred eCCCeEEEEEEEEecc
Q 000920 890 EPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 890 ~~g~GStF~f~Lpl~~ 905 (1223)
.++.||+|+++.++..
T Consensus 125 ~~~~Gt~~~i~~~~~~ 140 (146)
T PRK03660 125 EPGKGTTVRMKKYLKK 140 (146)
T ss_pred cCCCcEEEEEEEEecc
Confidence 9999999999998864
|
|
| >PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-09 Score=116.26 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=94.8
Q ss_pred EEEEEecChhHHHHHHHHHhhCCC---EEEEECCHHHHHHHhCCCCCccEEEEeCC--CCCCCHHHHHHHHHhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGA---IVTCVDCGRAAVDKLTPPHNFDACFMDLQ--MPEMDGFQATWQIRHLENEINE 1157 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~---~V~~a~~G~eAl~~l~~~~~~DlIlmDi~--MP~MDG~eatr~IR~~e~~~~~ 1157 (1223)
.||||||++..+..++.+|...++ .+..+.++.+++..+. ...||+||||+. ||.+||.+++++|++..
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~-~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~----- 75 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD-SLRPSVVFINEDCFIHDASNSQRIKQIINQH----- 75 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh-ccCCCEEEEeCcccCCCCChHHHHHHHHHHC-----
Confidence 489999999999999999987653 4567899999999876 357999999976 89999999999998632
Q ss_pred hhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCE-EEECCCCHHHHHHHHHHHhh
Q 000920 1158 QIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD-YVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1158 ~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~dd-yl~KP~~~~~L~~~v~r~l~ 1221 (1223)
+.+|||++|+........ ++..|.+. |+.|+.+.++|..+|+....
T Consensus 76 -----------------p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~ 122 (207)
T PRK15411 76 -----------------PNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILK 122 (207)
T ss_pred -----------------CCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHc
Confidence 247999999987765543 55566665 89999999999999988754
|
|
| >PRK10693 response regulator of RpoS; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-09 Score=125.17 Aligned_cols=88 Identities=24% Similarity=0.335 Sum_probs=78.2
Q ss_pred EECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCCHH
Q 000920 1110 CVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189 (1223)
Q Consensus 1110 ~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~ 1189 (1223)
.+.+|.+|++.+.. ..||+|++|+.||+|||++++++||+.. .++|||++|+....+
T Consensus 2 ~a~~g~~al~~l~~-~~pDlVL~D~~mp~~~Gle~~~~ir~~~----------------------~~ipiI~lt~~~~~~ 58 (303)
T PRK10693 2 LAANGVDALELLGG-FTPDLIICDLAMPRMNGIEFVEHLRNRG----------------------DQTPVLVISATENMA 58 (303)
T ss_pred EeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcC----------------------CCCcEEEEECCCCHH
Confidence 47889999998864 6799999999999999999999998632 257999999999999
Q ss_pred hHHHHHHcCCCEEEECCC-CHHHHHHHHHHHh
Q 000920 1190 SNEQCMKCGMDDYVSKPF-EDEQLYTAVARFF 1220 (1223)
Q Consensus 1190 ~~~~~l~aG~ddyl~KP~-~~~~L~~~v~r~l 1220 (1223)
...+++++|++||+.||+ +.++|..+|.+.+
T Consensus 59 ~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l 90 (303)
T PRK10693 59 DIAKALRLGVQDVLLKPVKDLNRLREMVFACL 90 (303)
T ss_pred HHHHHHHCCCcEEEECCCCcHHHHHHHHHHHh
Confidence 999999999999999999 5899988887665
|
|
| >COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-07 Score=109.21 Aligned_cols=123 Identities=25% Similarity=0.443 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhh
Q 000920 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVL 780 (1223)
Q Consensus 701 l~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l 780 (1223)
.+.+..........-++..........+..-..-..-+-+|+.-.++||+||++ ..++.|++...++
T Consensus 243 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~-A~~v~V~l~~~~~------------ 309 (365)
T COG4585 243 VEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQ-ATEVRVTLERTDD------------ 309 (365)
T ss_pred HHHHHHHHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccC-CceEEEEEEEcCC------------
Confidence 333333333444445666655544311111123466789999999999999994 5677777754332
Q ss_pred hhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCC
Q 000920 781 EKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSST 860 (1223)
Q Consensus 781 ~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~st 860 (1223)
.+.++|.|+|.|.+++..
T Consensus 310 ------------------------------------------------~l~l~V~DnG~Gf~~~~~-------------- 327 (365)
T COG4585 310 ------------------------------------------------ELRLEVIDNGVGFDPDKE-------------- 327 (365)
T ss_pred ------------------------------------------------EEEEEEEECCcCCCcccc--------------
Confidence 588999999999876521
Q ss_pred CCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 000920 861 SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903 (1223)
Q Consensus 861 sr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl 903 (1223)
+.|+||.=-|+=++.+||++.+.|.+|+||++++++|+
T Consensus 328 -----~~~~GL~~mreRv~~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 328 -----GGGFGLLGMRERVEALGGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred -----CCCcchhhHHHHHHHcCCEEEEEecCCCceEEEEecCC
Confidence 16799999999999999999999999999999999984
|
|
| >cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers | Back alignment and domain information |
|---|
Probab=98.98 E-value=6e-09 Score=95.14 Aligned_cols=112 Identities=31% Similarity=0.500 Sum_probs=99.8
Q ss_pred EEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCc
Q 000920 1085 LVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGES 1164 (1223)
Q Consensus 1085 LVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~ 1164 (1223)
|++|+++..+..+...|...|+.+..+.++.+++..+.. +.||++++|..++..+|++..+.++...
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~~~~~~~~~~~~~~~~l~~~~------------ 67 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE-EKPDLILLDIMMPGMDGLELLRRIRKRG------------ 67 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh-CCCCEEEEecCCCCCchHHHHHHHHHhC------------
Confidence 578999999999999999999999999999999988764 6799999999999999999999998631
Q ss_pred ccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 000920 1165 SAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219 (1223)
Q Consensus 1165 ~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1219 (1223)
..+|+++++..........++..|+++|+.||++.++|...+.+.
T Consensus 68 ----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 68 ----------PDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ----------CCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 247999999888888888999999999999999999999988764
|
|
| >COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.6e-07 Score=100.78 Aligned_cols=226 Identities=16% Similarity=0.263 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000920 587 VGHIFHAAINRIAQVENDYHE-MMELKARAEAA----DVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQ 661 (1223)
Q Consensus 587 v~~i~~~~i~ri~~ve~~~~e-l~e~k~~ae~a----~~aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~ 661 (1223)
.|..+-.++.|..++..+..+ +.+.+.-+|+. +..+.+...-+=.||-.-+++|..-..+.+.-..++..+....
T Consensus 263 ~Gl~LGiaIqrlrelnqrL~~EL~~~raLaeqListEEsiRk~vARELHDeIGQnITAIr~Qa~ivkR~~~~~q~kqaas 342 (497)
T COG3851 263 TGLGLGIAIQRLRELNQRLQKELARNRALAEQLISTEESIRKDVARELHDEIGQNITAIRTQAGIVKRAADNAQVKQAAS 342 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhccCCHhHHhHHH
Confidence 333344455665555444322 22222222222 2234444555556788889999988888877666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHHHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHHHHHHH
Q 000920 662 TAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQI 741 (1223)
Q Consensus 662 ~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~rL~QI 741 (1223)
.|+.-+.++..-+..+|..-|- .......+.+.+..+++.+. ..++||...++...+....-..-..-+-++
T Consensus 343 ~Ie~LslrI~~svrqLL~rLRP------~~LDdL~l~qai~~l~~Em~--~~ergihcq~~~~~n~~~ldet~rvTLyRl 414 (497)
T COG3851 343 LIEQLSLRIYDSVRQLLGRLRP------RQLDDLTLEQAIRSLLREME--LEERGIHCQLDWRINETALDETQRVTLYRL 414 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC------cccccccHHHHHHHHHHHhh--hhhcCeEEEeccccCcccCCcceeEeHHHH
Confidence 6666666666666666543321 11234567788888887765 456788776655422111000112247888
Q ss_pred HHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccc
Q 000920 742 ITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNT 821 (1223)
Q Consensus 742 L~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~ 821 (1223)
..-+++|-+|+. +...|.|..+..++
T Consensus 415 ~QE~LNNI~KHA-~AS~V~i~l~~~~e----------------------------------------------------- 440 (497)
T COG3851 415 CQELLNNICKHA-DASAVTIQLWQQDE----------------------------------------------------- 440 (497)
T ss_pred HHHHHHHHHhcc-ccceEEEEEeeCCc-----------------------------------------------------
Confidence 999999999999 56778887765432
Q ss_pred cccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEE
Q 000920 822 MEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTV 901 (1223)
Q Consensus 822 ~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~L 901 (1223)
.+.++|+|+|+|+|+.. +-+|.||.=.++=|..+||++.++| ..||...+++
T Consensus 441 -------~l~Lei~DdG~Gl~~~~-------------------~v~G~Gl~GmrERVsaLGG~ltlss--q~GTrviVnL 492 (497)
T COG3851 441 -------RLMLEIEDDGSGLPPGS-------------------GVQGFGLTGMRERVSALGGTLTLSS--QHGTRVIVNL 492 (497)
T ss_pred -------EEEEEEecCCcCCCCCC-------------------CccCcCcchHHHHHHHhCCceEEEe--ccCcEEEEec
Confidence 57899999999998641 3468888889999999999999999 5789999998
Q ss_pred E
Q 000920 902 T 902 (1223)
Q Consensus 902 p 902 (1223)
|
T Consensus 493 P 493 (497)
T COG3851 493 P 493 (497)
T ss_pred c
Confidence 8
|
|
| >COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.8e-07 Score=98.88 Aligned_cols=195 Identities=25% Similarity=0.362 Sum_probs=131.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDV 700 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~l 700 (1223)
.|..++.-+.|-++|=|..|..++.+-.....++ ..+.....+.....| .++-+.|--+ .....+...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~sl-a~~He~L~~s---------~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQSL-ALIHELLYKS---------GDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHH-HHHHHHHhcC---------CcceEcHHHH
Confidence 4566788899999999999999988765544443 223333222222222 2333433322 2345677788
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeC-HHHHHHHHHHHHHHHHhccC---CCCeEEEEEEEccCccccccch
Q 000920 701 LDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGD-PGRFRQIITNLVGNSIKFTQ---DKGHIFVSVHLADDVRSKVDVK 776 (1223)
Q Consensus 701 l~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD-~~rL~QIL~NLLsNAIKfT~---~~G~I~V~v~~~~~~~~~~~~~ 776 (1223)
++.+...+.+....+++.+.....+.+ .+-.| ..-|--|+.-|++||+||.- ++|.|.|.++..++.
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~--~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~------- 157 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNV--FLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDG------- 157 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCce--EECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCC-------
Confidence 887777776654455677766554431 22222 34578899999999999964 378888887654321
Q ss_pred hhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCccc
Q 000920 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQA 856 (1223)
Q Consensus 777 ~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~ 856 (1223)
. ...+.|.|+|.|+|.+. ++
T Consensus 158 --------------------------------------------------~-~~~l~v~deg~G~~~~~------~~--- 177 (221)
T COG3920 158 --------------------------------------------------G-RFLLTVWDEGGGPPVEA------PL--- 177 (221)
T ss_pred --------------------------------------------------C-eEEEEEEECCCCCCCCC------CC---
Confidence 0 35688999999998652 00
Q ss_pred CCCCCCCCCCcccHHHHHHHHH-HHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 857 DSSTSRTYGGTGIGLSISRCLV-ELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 857 d~stsr~~gGTGLGLsI~k~LV-elmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
...|+|+.+++.++ ++.||.+...+.. ||+|++++|...
T Consensus 178 --------~~~g~G~~Lv~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~~~ 217 (221)
T COG3920 178 --------SRGGFGLQLVERLVPEQLGGELEDERPD--GTEFRLRFPLSE 217 (221)
T ss_pred --------CCCCcHHHHHHHHHHHHcCCeEEEEcCC--CEEEEEEEeccc
Confidence 24689999999999 8999999887755 999999998753
|
|
| >COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-06 Score=102.51 Aligned_cols=184 Identities=26% Similarity=0.390 Sum_probs=126.7
Q ss_pred HHhhhhhHHHHHHHHHHHHH----Hh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceeeecHHH
Q 000920 627 ATVSHEIRTPMNGVLGMLQM----LM---DTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHD 699 (1223)
Q Consensus 627 A~vSHELRTPLn~IlG~lel----L~---~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~~~~fdL~~ 699 (1223)
+.|+-||---|.-.+.++.+ |. ..+..++.++.+..+....+.-..-+.++|.--|+ ....-++..
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~ 446 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPP 446 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHH
Confidence 34556666666655555543 32 22344555666666666666556666666654443 223346778
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEecCCCCceEEeCHH---HHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccch
Q 000920 700 VLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPG---RFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVK 776 (1223)
Q Consensus 700 ll~~vl~~f~~~a~~k~I~l~v~v~~~~p~~v~gD~~---rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~ 776 (1223)
-++++++.|+.+ -|+.+.++.. .|... -|+. .+-||+.--++||+||+ ...+|.|+++..+
T Consensus 447 AL~~~~~~f~~q---tg~~~~l~~q--lp~~~-lpa~qqvHlLqIvREAlsNa~KHa-~As~i~V~~~~~~--------- 510 (574)
T COG3850 447 ALEQMLAEFSNQ---TGITVTLDYQ--LPPRA-LPAHQQVHLLQIVREALSNAIKHA-QASEIKVTVSQND--------- 510 (574)
T ss_pred HHHHHHHHHHhc---cCCeEEEecc--CCCCC-CCHHHHHHHHHHHHHHHHHHHHhc-ccCeEEEEEEecC---------
Confidence 888888877654 5666666543 33322 2433 46789999999999999 5778888886432
Q ss_pred hhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCccc
Q 000920 777 DKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQA 856 (1223)
Q Consensus 777 ~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~ 856 (1223)
..+.+.|+|+|+|||+..
T Consensus 511 ---------------------------------------------------g~~~~~VeDnG~Gi~~~~----------- 528 (574)
T COG3850 511 ---------------------------------------------------GQVTLTVEDNGVGIDEAA----------- 528 (574)
T ss_pred ---------------------------------------------------CeEEEEEeeCCcCCCCcc-----------
Confidence 147899999999999752
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEE
Q 000920 857 DSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVT 902 (1223)
Q Consensus 857 d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lp 902 (1223)
. .+| --||.|.+.=++.+||.+.|++.+|+||++.+++|
T Consensus 529 e------~~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~ 567 (574)
T COG3850 529 E------PSG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFP 567 (574)
T ss_pred C------CCC-CcchHHHHHHHHHhcCeEEEeecCCCCeEEEEEec
Confidence 1 123 56899999999999999999999999999999886
|
|
| >COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-06 Score=102.15 Aligned_cols=66 Identities=29% Similarity=0.402 Sum_probs=55.0
Q ss_pred EEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCC-cccHHHHHHHHHHHcCCE--EEEEEeCCCeEEEEEEEEecc
Q 000920 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGG-TGIGLSISRCLVELMGGE--IGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 829 ~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gG-TGLGLsI~k~LVelmgG~--I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
.+.++|+|+|+||+++....+.+.- ++ .|+||+=+++.++.+-|. +.++|.+++||+..+.+|...
T Consensus 386 ~i~i~i~Dng~g~~~~~~~~~~~~~-----------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~~ 454 (456)
T COG2972 386 VIQISISDNGPGIDEEKLEGLSTKG-----------ENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKRE 454 (456)
T ss_pred EEEEEEeeCCCCCChhHHHHHHhhc-----------cCcccccHHHHHHHHHHeeCCcceeEeecCCCcEEEEEEeehhh
Confidence 6889999999999998776664321 22 599999999999999887 689999999999999998643
|
|
| >PRK04069 serine-protein kinase RsbW; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-07 Score=98.37 Aligned_cols=104 Identities=19% Similarity=0.336 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHHHHhccCC---CCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccc
Q 000920 734 DPGRFRQIITNLVGNSIKFTQD---KGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSW 810 (1223)
Q Consensus 734 D~~rL~QIL~NLLsNAIKfT~~---~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w 810 (1223)
|...++.++..++.||++|... +|.|.|++...++
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~------------------------------------------ 76 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYED------------------------------------------ 76 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECC------------------------------------------
Confidence 5667889999999999999853 3567776654321
Q ss_pred cccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEe
Q 000920 811 ENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890 (1223)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~ 890 (1223)
.+.|.|+|+|+|++++.....|.||+...+... ..+.|+||.+++.|++. +.+.+
T Consensus 77 ------------------~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~~--~~~~G~GL~li~~l~d~----v~~~~- 131 (161)
T PRK04069 77 ------------------RLEIVVADNGVSFDYETLKSKLGPYDISKPIED--LREGGLGLFLIETLMDD----VTVYK- 131 (161)
T ss_pred ------------------EEEEEEEECCcCCChHHhccccCCCCCCCcccc--cCCCceeHHHHHHHHHh----EEEEc-
Confidence 588999999999999999999999876544322 24679999999999986 66665
Q ss_pred CCCeEEEEEEEEecc
Q 000920 891 PGTGSTFSFTVTFTE 905 (1223)
Q Consensus 891 ~g~GStF~f~Lpl~~ 905 (1223)
..|++|+++-.+..
T Consensus 132 -~~G~~v~~~k~~~~ 145 (161)
T PRK04069 132 -DSGVTVSMTKYINR 145 (161)
T ss_pred -CCCcEEEEEEEcCc
Confidence 46889988876643
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.8e-08 Score=122.51 Aligned_cols=106 Identities=14% Similarity=0.193 Sum_probs=85.1
Q ss_pred EEEEEecChh--------HHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHH----HHHHHHHh
Q 000920 1083 QILVVDDNMV--------NRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF----QATWQIRH 1150 (1223)
Q Consensus 1083 rILVVDDn~~--------n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~----eatr~IR~ 1150 (1223)
+||||||+.. .++.+...|+..||+|..+.++.+|++.+.....||+||+|++||+|||+ +++++||+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR~ 81 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHHh
Confidence 6999999995 69999999999999999999999999998643579999999999999998 89999985
Q ss_pred hhhhhhhhhhcCCcccccccCCCCCcccEEEEeccCC--HHhHHHHHHcCCCEEEECCCCHHH
Q 000920 1151 LENEINEQIASGESSAEMFGNVGLWHVPILAMTADVI--QASNEQCMKCGMDDYVSKPFEDEQ 1211 (1223)
Q Consensus 1151 ~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~--~~~~~~~l~aG~ddyl~KP~~~~~ 1211 (1223)
.. ..+|||++|+... ...-...++ -+++|+-+--+..+
T Consensus 82 ~~----------------------~~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 121 (755)
T PRK15029 82 RQ----------------------QNVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTAD 121 (755)
T ss_pred hC----------------------CCCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHH
Confidence 21 2589999999886 333222222 25778877655444
|
|
| >COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8e-06 Score=95.56 Aligned_cols=131 Identities=27% Similarity=0.372 Sum_probs=93.9
Q ss_pred eeeecHHHHHHHHHHHHHHHHHhc--CcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcc----CCCCeEEEEEEE
Q 000920 692 FVPFHLHDVLDNVLSLFSSKANQK--GIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFT----QDKGHIFVSVHL 765 (1223)
Q Consensus 692 ~~~fdL~~ll~~vl~~f~~~a~~k--~I~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT----~~~G~I~V~v~~ 765 (1223)
...+.|.+-++.+-.-.+-.-.+- .+++.+++++.+-.. .=|. -++.=|+.|||||. .++|.|.|+|..
T Consensus 414 ~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~--~iP~---filQPLVENAIKHG~~~~~~~g~V~I~V~~ 488 (557)
T COG3275 414 QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQV--QIPS---FILQPLVENAIKHGISQLKDTGRVTISVEK 488 (557)
T ss_pred ceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhhc--cCch---hhhhHHHHHHHHhcccchhcCCceEEEEEE
Confidence 346778888888776655432222 244444444432211 1122 24667899999995 356888888865
Q ss_pred ccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHh
Q 000920 766 ADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEA 845 (1223)
Q Consensus 766 ~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~ 845 (1223)
.+. .+++.|+|+|.||+++
T Consensus 489 ~d~------------------------------------------------------------~l~i~VeDng~li~p~- 507 (557)
T COG3275 489 EDA------------------------------------------------------------DLRIEVEDNGGLIQPD- 507 (557)
T ss_pred eCC------------------------------------------------------------eEEEEEecCCCCcCCC-
Confidence 432 4889999999999886
Q ss_pred HhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCC---EEEEEEeCCCeEEEEEEEEecc
Q 000920 846 QVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGG---EIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 846 ~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG---~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
...|+|+||+.+++=++.+=| -+.++|.+..||+++|.+|+..
T Consensus 508 -----------------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~ 553 (557)
T COG3275 508 -----------------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQR 553 (557)
T ss_pred -----------------CCCCCChHHHHHHHHHHHhcCccccceEEeccCCCcEEEEEecCcc
Confidence 124899999999999888888 7999999999999999999864
|
|
| >COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-07 Score=105.70 Aligned_cols=112 Identities=26% Similarity=0.382 Sum_probs=93.1
Q ss_pred EEEEEecChhHHHHHHHHHhhCC--CEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhh
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHG--AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIA 1160 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G--~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~ 1160 (1223)
+|+++||++..+..+..++.... -.+..+.++.++++.+.. ..+|++|+|+.||+|+|+++.++||...
T Consensus 3 ~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fldI~~~~~~G~ela~~i~~~~-------- 73 (244)
T COG3279 3 KVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQG-LRPDLVFLDIAMPDINGIELAARIRKGD-------- 73 (244)
T ss_pred cEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhc-cCCCeEEEeeccCccchHHHHHHhcccC--------
Confidence 69999999999999999998322 223368889999998875 5899999999999999999999999742
Q ss_pred cCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 000920 1161 SGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219 (1223)
Q Consensus 1161 ~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1219 (1223)
...+|+++|++.. ....+++..+-|||.||++.+.|...+.+.
T Consensus 74 --------------~~~~Ivfvt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~ 116 (244)
T COG3279 74 --------------PRPAIVFVTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERL 116 (244)
T ss_pred --------------CCCeEEEEEehHH--HHHHHHhHHHHhhhcCcchHHHHHHHHHHH
Confidence 2457999999754 445566778899999999999999999864
|
|
| >TIGR01924 rsbW_low_gc serine-protein kinase RsbW | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=90.15 Aligned_cols=102 Identities=20% Similarity=0.371 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHhccCC---CCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCcccccccccc
Q 000920 735 PGRFRQIITNLVGNSIKFTQD---KGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWE 811 (1223)
Q Consensus 735 ~~rL~QIL~NLLsNAIKfT~~---~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~ 811 (1223)
...+.-++..++.||++|+.. +|.|.|.+...++
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~------------------------------------------- 76 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYED------------------------------------------- 76 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCC-------------------------------------------
Confidence 445888999999999999843 3577777654321
Q ss_pred ccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeC
Q 000920 812 NFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891 (1223)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~ 891 (1223)
.+.|.|+|+|.|++++.....|.|+...+... ...+.|+||.|+++|++ ++.+.+
T Consensus 77 -----------------~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~--~~~~~G~GL~Li~~L~D----~v~~~~-- 131 (159)
T TIGR01924 77 -----------------RLEIIVSDQGDSFDMDTFKQSLGPYDGSEPID--DLREGGLGLFLIETLMD----EVEVYE-- 131 (159)
T ss_pred -----------------EEEEEEEEcccccCchhhccccCCCCCCCCcc--cCCCCccCHHHHHHhcc----EEEEEe--
Confidence 58899999999999998888888876544332 23466999999999998 577776
Q ss_pred CCeEEEEEEEEec
Q 000920 892 GTGSTFSFTVTFT 904 (1223)
Q Consensus 892 g~GStF~f~Lpl~ 904 (1223)
+.|+++++...+.
T Consensus 132 ~~G~~l~l~k~~~ 144 (159)
T TIGR01924 132 DSGVTVAMTKYLN 144 (159)
T ss_pred CCCEEEEEEEEEc
Confidence 4567877775554
|
This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV. |
| >smart00388 HisKA His Kinase A (phosphoacceptor) domain | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=75.19 Aligned_cols=64 Identities=47% Similarity=0.762 Sum_probs=57.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000920 622 KSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIES 685 (1223)
Q Consensus 622 Ks~FLA~vSHELRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKies 685 (1223)
+.+|++.++||+||||++|.++++.+.+...+++..++++.+..++.++..++++++++++.+.
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4679999999999999999999999887666667788999999999999999999999999765
|
Dimerisation and phosphoacceptor domain of histidine kinases. |
| >COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00011 Score=82.32 Aligned_cols=186 Identities=18% Similarity=0.275 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-eeeecHHHHHHHHHHHHHHH
Q 000920 633 IRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPE-FVPFHLHDVLDNVLSLFSSK 711 (1223)
Q Consensus 633 LRTPLn~IlG~lelL~~~~l~~~q~~~l~~i~~s~~~Ll~LIndlLD~sKiesgkl~l~-~~~fdL~~ll~~vl~~f~~~ 711 (1223)
|..-|-++.-.+++....-.++.+ .....+..++.+|..-|+++-.+|- .+.+. ....-|..-++-.++.|+
T Consensus 262 IsQ~LVs~k~~lela~~ql~~p~~-~a~~aieKaa~aL~~Ai~EVRRiSH----~LRP~~LDDLGL~aALe~L~~~f~-- 334 (459)
T COG4564 262 ISQNLVSVKCALELAARQLNPPKG-GAHPAIEKAADALNGAIKEVRRISH----DLRPRALDDLGLTAALEALLEDFK-- 334 (459)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCC-CCchhhhhHHHHHHHHHHHHHHhcc----ccChhhhhhhhHHHHHHHHHHHhh--
Confidence 344455666667776543222221 1224566777889999998866653 11111 112224444555555554
Q ss_pred HHhcCcEEEEEecCCCCceEE-eCHHHHHHHHHHHHHHHHhccCCCCeEEEEEEEccCccccccchhhhhhhhccccccc
Q 000920 712 ANQKGIELAIYVSDRVPEVVI-GDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHK 790 (1223)
Q Consensus 712 a~~k~I~l~v~v~~~~p~~v~-gD~~rL~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~ 790 (1223)
.+.|+++.+..+. .|..+. .-...|.+|..--++|-=+|+ ....|.|...-..
T Consensus 335 -~~tg~~itle~~~-~p~~l~~e~~talyRv~QEaltNIErHa-~Atrv~ill~~~~----------------------- 388 (459)
T COG4564 335 -ERTGIEITLEFDT-QPGKLKPEVATALYRVVQEALTNIERHA-GATRVTILLQQMG----------------------- 388 (459)
T ss_pred -hccCeEEEEEecC-CcccCCcHHHHHHHHHHHHHHHHHHhhc-CCeEEEEEeccCC-----------------------
Confidence 5678888887653 233322 224568899999999998988 3445555443111
Q ss_pred ccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccH
Q 000920 791 SDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIG 870 (1223)
Q Consensus 791 ~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLG 870 (1223)
..+...|+|+|.|.+.+... ..-.|||
T Consensus 389 -------------------------------------d~vql~vrDnG~GF~~~~~~----------------~~~~GiG 415 (459)
T COG4564 389 -------------------------------------DMVQLMVRDNGVGFSVKEAL----------------QKRHGIG 415 (459)
T ss_pred -------------------------------------cceEEEEecCCCCccchhhc----------------cCccccc
Confidence 15789999999999865321 1125999
Q ss_pred HHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEecc
Q 000920 871 LSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTE 905 (1223)
Q Consensus 871 LsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~~ 905 (1223)
|--.++-+...||++.++|.|. ||..++.+|...
T Consensus 416 LRNMrERma~~GG~~~v~s~p~-GTel~v~Lp~~~ 449 (459)
T COG4564 416 LRNMRERMAHFGGELEVESSPQ-GTELTVLLPLDA 449 (459)
T ss_pred cccHHHHHHHhCceEEEEecCC-CcEEEEEecchh
Confidence 9999999999999999999986 999999999753
|
|
| >PF14501 HATPase_c_5: GHKL domain | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-05 Score=77.53 Aligned_cols=95 Identities=26% Similarity=0.391 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHHHHhccCC---CCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccc
Q 000920 734 DPGRFRQIITNLVGNSIKFTQD---KGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSW 810 (1223)
Q Consensus 734 D~~rL~QIL~NLLsNAIKfT~~---~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w 810 (1223)
|+.-|-.+|.||++||++++.. ...|.|.+...+
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~------------------------------------------- 38 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIREEN------------------------------------------- 38 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC-------------------------------------------
Confidence 4566889999999999999754 345665554322
Q ss_pred cccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEe
Q 000920 811 ENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890 (1223)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~ 890 (1223)
..+.|.|+++-.+ +. +.++ +++...++.|+||.+++++++.++|.+.++.+
T Consensus 39 -----------------~~~~i~i~N~~~~---~~-~~~~--------~~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~ 89 (100)
T PF14501_consen 39 -----------------GFLVIIIENSCEK---EI-EKLE--------SSSSKKKGHGIGLKNVKKILEKYNGSLSIESE 89 (100)
T ss_pred -----------------CEEEEEEEECCCC---cc-cccc--------ccccCCCCCCcCHHHHHHHHHHCCCEEEEEEE
Confidence 1578899998544 11 2222 22345578999999999999999999999887
Q ss_pred CCCeEEEEEEEEe
Q 000920 891 PGTGSTFSFTVTF 903 (1223)
Q Consensus 891 ~g~GStF~f~Lpl 903 (1223)
.+ .|++++-+
T Consensus 90 ~~---~f~~~i~i 99 (100)
T PF14501_consen 90 DG---IFTVKIVI 99 (100)
T ss_pred CC---EEEEEEEE
Confidence 54 56665543
|
|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.4e-06 Score=107.73 Aligned_cols=117 Identities=19% Similarity=0.154 Sum_probs=98.7
Q ss_pred CCCCcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhh
Q 000920 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINE 1157 (1223)
Q Consensus 1078 ~~~~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~ 1157 (1223)
.+.+++|||+||++.++..+..+|...|+.+..+.++.+ +. ...||++++|..||.+++.+..........
T Consensus 533 ~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~-~~~~d~il~~~~~~~~~~~~~~~~~~~~~~---- 603 (919)
T PRK11107 533 CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LP-EAHYDILLLGLPVTFREPLTMLHERLAKAK---- 603 (919)
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hc-cCCCCEEEecccCCCCCCHHHHHHHHHhhh----
Confidence 356789999999999999999999999999999999887 22 357999999999999888876655543211
Q ss_pred hhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 000920 1158 QIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219 (1223)
Q Consensus 1158 ~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1219 (1223)
....|+|++++.........+.+.|+++|+.||+...+|...+...
T Consensus 604 ----------------~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~ 649 (919)
T PRK11107 604 ----------------SMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEP 649 (919)
T ss_pred ----------------hcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHh
Confidence 1134788899999999999999999999999999999999888754
|
|
| >KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0002 Score=81.99 Aligned_cols=151 Identities=23% Similarity=0.340 Sum_probs=108.0
Q ss_pred eeecHHHHHHHHHHHHHHHHHhcCc---EEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccCC----CCe----EEE
Q 000920 693 VPFHLHDVLDNVLSLFSSKANQKGI---ELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQD----KGH----IFV 761 (1223)
Q Consensus 693 ~~fdL~~ll~~vl~~f~~~a~~k~I---~l~v~v~~~~p~~v~gD~~rL~QIL~NLLsNAIKfT~~----~G~----I~V 761 (1223)
...++.++|.++.+..+..+..+=+ ++.+.-+......| .=|.-|.-++.-|+.||.++|-+ .+. |.|
T Consensus 214 ~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~~~v-yvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V 292 (414)
T KOG0787|consen 214 PRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALSFTV-YVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKV 292 (414)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccccCcc-ccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 3578999999998877766555432 23333222222221 35788999999999999998832 233 444
Q ss_pred EEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccccccccccCccccccccceEEEEEEEecCCCC
Q 000920 762 SVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGI 841 (1223)
Q Consensus 762 ~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI 841 (1223)
.|...+ ..+.|.|+|.|-||
T Consensus 293 ~V~~gd------------------------------------------------------------eDl~ikISDrGGGV 312 (414)
T KOG0787|consen 293 TVAKGD------------------------------------------------------------EDLLIKISDRGGGV 312 (414)
T ss_pred EEecCC------------------------------------------------------------cceEEEEecCCCCc
Confidence 443211 24678899999999
Q ss_pred CHHhHhhhcCCCcccCCCC------CCCCCCcccHHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEec
Q 000920 842 PLEAQVRIFTPFMQADSST------SRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFT 904 (1223)
Q Consensus 842 ~~e~~~rLFepF~q~d~st------sr~~gGTGLGLsI~k~LVelmgG~I~v~S~~g~GStF~f~Lpl~ 904 (1223)
+.+..+++|.=-|...+.. ...-.|.|-||.|||...+..||.+.+.|-.|-||-..+.+...
T Consensus 313 ~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~l 381 (414)
T KOG0787|consen 313 PHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDVYIYLKAL 381 (414)
T ss_pred ChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHHhCCCeeEEeeeccccceEEEeccC
Confidence 9999999997655433222 22235999999999999999999999999999999998887543
|
|
| >COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.7e-06 Score=99.83 Aligned_cols=90 Identities=28% Similarity=0.420 Sum_probs=80.0
Q ss_pred CEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEecc
Q 000920 1106 AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTAD 1185 (1223)
Q Consensus 1106 ~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~ 1185 (1223)
++|..+..|.+|+..+. .+.+|+++.|++||+|||+++++++++.. .+++++|+.
T Consensus 13 ~~v~~a~~g~~~l~~~~-~~~~~~~lld~~m~~~~~~~~~~~lk~~~------------------------~~~v~~t~~ 67 (435)
T COG3706 13 KEVATAKKGLIALAILL-DHKPDYKLLDVMMPGMDGFELCRRLKAEP------------------------ATVVMVTAL 67 (435)
T ss_pred hhhhhccchHHHHHHHh-cCCCCeEEeecccCCcCchhHHHHHhcCC------------------------cceEEEEec
Confidence 56777999999999886 48899999999999999999999998642 248999999
Q ss_pred CCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Q 000920 1186 VIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFF 1220 (1223)
Q Consensus 1186 ~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l 1220 (1223)
...++..+.+++|++++++||++...+...+..+.
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~ 102 (435)
T COG3706 68 DDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLV 102 (435)
T ss_pred CCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhc
Confidence 99999999999999999999999999988876553
|
|
| >cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.3e-05 Score=64.90 Aligned_cols=62 Identities=42% Similarity=0.717 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000920 621 AKSQFLATVSHEIRTPMNGVLGMLQMLMDTEL-DAAQLDYAQTAHNSGKDLISLINDVLDQAK 682 (1223)
Q Consensus 621 aKs~FLA~vSHELRTPLn~IlG~lelL~~~~l-~~~q~~~l~~i~~s~~~Ll~LIndlLD~sK 682 (1223)
.+.++.+.++|||||||+++.++++.+..... .+...+++..+..++.++..++++++++++
T Consensus 3 ~~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45679999999999999999999998876432 566678889999999999999999998874
|
They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes. |
| >TIGR00585 mutl DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00016 Score=83.97 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=45.9
Q ss_pred EEEEEEecCCCCCHHhHhhhcCCCcccCCCC------CCCCCCcccHHHHHHHHHHHcCCEEEEEEeC--CCeEEEEE
Q 000920 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSST------SRTYGGTGIGLSISRCLVELMGGEIGFVSEP--GTGSTFSF 899 (1223)
Q Consensus 830 l~IsV~DTGiGI~~e~~~rLFepF~q~d~st------sr~~gGTGLGLsI~k~LVelmgG~I~v~S~~--g~GStF~f 899 (1223)
..|+|.|+|.||++++++++|++|+..+..+ ...+|--|.||+-...+ +.+.+.|.. +.+..+.+
T Consensus 52 ~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~~~~~ 124 (312)
T TIGR00585 52 KLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGLAWQA 124 (312)
T ss_pred EEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcceEEE
Confidence 4599999999999999999999999765432 12345668888644333 378888875 44444433
|
All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF13581 HATPase_c_2: Histidine kinase-like ATPase domain | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00062 Score=67.70 Aligned_cols=94 Identities=19% Similarity=0.281 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHHHHHhccCCC---CeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccc
Q 000920 734 DPGRFRQIITNLVGNSIKFTQDK---GHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSW 810 (1223)
Q Consensus 734 D~~rL~QIL~NLLsNAIKfT~~~---G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w 810 (1223)
+..++.-++.-++.||++|...+ +.|.|.+....+
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~------------------------------------------ 65 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPD------------------------------------------ 65 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCC------------------------------------------
Confidence 34578899999999999998643 456665543221
Q ss_pred cccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEe
Q 000920 811 ENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSE 890 (1223)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~ 890 (1223)
.+.|+|.|.|.|+++.....--..-. ......|+||.|.+.+++.+ .+ +
T Consensus 66 ------------------~l~i~v~D~G~~~d~~~~~~~~~~~~-------~~~~~~G~Gl~li~~l~D~~----~~-~- 114 (125)
T PF13581_consen 66 ------------------RLRISVRDNGPGFDPEQLPQPDPWEP-------DSLREGGRGLFLIRSLMDEV----DY-R- 114 (125)
T ss_pred ------------------EEEEEEEECCCCCChhhccCcccccC-------CCCCCCCcCHHHHHHHHcEE----EE-E-
Confidence 58899999999998875433221100 22346799999999999875 55 4
Q ss_pred CCCeEEEEEE
Q 000920 891 PGTGSTFSFT 900 (1223)
Q Consensus 891 ~g~GStF~f~ 900 (1223)
.+.|++++++
T Consensus 115 ~~~gn~v~l~ 124 (125)
T PF13581_consen 115 EDGGNTVTLR 124 (125)
T ss_pred CCCeEEEEEE
Confidence 7789988764
|
|
| >COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0007 Score=79.33 Aligned_cols=112 Identities=23% Similarity=0.427 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHHHHhccCCCC---eEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccccc
Q 000920 734 DPGRFRQIITNLVGNSIKFTQDKG---HIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSW 810 (1223)
Q Consensus 734 D~~rL~QIL~NLLsNAIKfT~~~G---~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~~w 810 (1223)
-...|-|++.-|+.||+.+|.+.| .|.|.+...+
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~------------------------------------------- 69 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIG------------------------------------------- 69 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecC-------------------------------------------
Confidence 345699999999999999997766 3555554321
Q ss_pred cccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCC-C-CCCCCCcccHHHHHHHHHHHcCCE-EEE
Q 000920 811 ENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSS-T-SRTYGGTGIGLSISRCLVELMGGE-IGF 887 (1223)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~s-t-sr~~gGTGLGLsI~k~LVelmgG~-I~v 887 (1223)
+....+.|+|||+|||.+..+++|-.+.-.+.- . ....|-.|||.+-|=-..++.-|+ +.|
T Consensus 70 ----------------~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V 133 (538)
T COG1389 70 ----------------KDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRV 133 (538)
T ss_pred ----------------CceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEE
Confidence 225789999999999999999999765422211 1 112356789999888888888775 777
Q ss_pred EEeCCC-eEEEEEEEEec
Q 000920 888 VSEPGT-GSTFSFTVTFT 904 (1223)
Q Consensus 888 ~S~~g~-GStF~f~Lpl~ 904 (1223)
.|..+. ++...+.|-..
T Consensus 134 ~s~T~~s~~~~~~~l~id 151 (538)
T COG1389 134 ISSTGDSGTAYEYELKID 151 (538)
T ss_pred EecCCCCcceEEEEEEec
Confidence 776543 66666666554
|
|
| >PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0037 Score=59.94 Aligned_cols=108 Identities=25% Similarity=0.258 Sum_probs=80.6
Q ss_pred EEEecChhhhHHHHHHHHHhccc-eEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 930 ALVIDDKSIRAEVTRYHLQRLEM-AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 930 vLvVDd~~~~~~v~~~~L~~lg~-~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
++++||++..+..+...++..|+ .+..+.+..++...+.+. .++++++|....+. .+..+. +..+...
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~-------~~d~iiid~~~~~~-~~~~~~---~~i~~~~ 69 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKH-------PPDLIIIDLELPDG-DGLELL---EQIRQIN 69 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHS-------TESEEEEESSSSSS-BHHHHH---HHHHHHT
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhccc-------CceEEEEEeeeccc-cccccc---ccccccc
Confidence 68999999999999999999999 999999999999988654 47899999877663 333332 3333322
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccc
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIG 1054 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~ 1054 (1223)
.-+.++++....+..........|...++.||+....|..
T Consensus 70 ------~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~ 109 (112)
T PF00072_consen 70 ------PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRA 109 (112)
T ss_dssp ------TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHH
T ss_pred ------ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 2234455555555666667778999999999998877654
|
Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A .... |
| >COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0046 Score=68.70 Aligned_cols=113 Identities=29% Similarity=0.292 Sum_probs=82.3
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
+++|+|||++.....+..+|+..|+.|..+.++.+|...... . ++++++|..+++. .|..+. +..+..
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~-------~-~dlviLD~~lP~~-dG~~~~---~~iR~~ 68 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE-------Q-PDLVLLDLMLPDL-DGLELC---RRLRAK 68 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-------C-CCEEEEECCCCCC-CHHHHH---HHHHhh
Confidence 379999999999999999999999999999999999877643 2 7889999877643 344333 333322
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ...|.+++. ...+..+.-.....|..+|+.||+.+..|.+.+.
T Consensus 69 ~~----~~~PIi~Lt-a~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~ 113 (229)
T COG0745 69 KG----SGPPIIVLT-ARDDEEDRVLGLEAGADDYLTKPFSPRELLARLR 113 (229)
T ss_pred cC----CCCcEEEEE-CCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHH
Confidence 11 134555544 4455555666667899999999999888876543
|
|
| >smart00448 REC cheY-homologous receiver domain | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0069 Score=47.24 Aligned_cols=54 Identities=31% Similarity=0.471 Sum_probs=48.4
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCC
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP 1137 (1223)
+|+++||++..+..+...+...|+.+....++.++...+. .+.+|++++|+.+|
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLK-EEKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHH-hcCCCEEEEeccCC
Confidence 6899999999999999999999999999999999998775 35799999998765
|
CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues. |
| >COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.021 Score=59.06 Aligned_cols=92 Identities=23% Similarity=0.327 Sum_probs=64.1
Q ss_pred eCHHHHHHHHHHHHHHHHhccCC----CCeEEEEEEEccCccccccchhhhhhhhcccccccccccccccCCCccccccc
Q 000920 733 GDPGRFRQIITNLVGNSIKFTQD----KGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWK 808 (1223)
Q Consensus 733 gD~~rL~QIL~NLLsNAIKfT~~----~G~I~V~v~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~tlsg~~~~~~~~ 808 (1223)
-|-.+++-++.-++.||++|... .|.|.|.+...++
T Consensus 36 ~~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~---------------------------------------- 75 (146)
T COG2172 36 VDIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDG---------------------------------------- 75 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCC----------------------------------------
Confidence 36778999999999999999843 4888888765433
Q ss_pred cccccccccCccccccccceEEEEEEEecCCCCCHHhHhhhcCCCcccCCCCCCCCCCcccHHHHHHHHHHHcCCEEEEE
Q 000920 809 SWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888 (1223)
Q Consensus 809 ~w~~~~~~~~~~~~~~~~~~~l~IsV~DTGiGI~~e~~~rLFepF~q~d~stsr~~gGTGLGLsI~k~LVelmgG~I~v~ 888 (1223)
.+.+.|.|.|+||.+ ...-+.|.+. +...-..-|+||.+.+++++ ++.++
T Consensus 76 --------------------~~~i~i~D~G~~~~~--~~~~~~~~~~----~~~~~~~~G~Gl~l~~~~~D----~~~~~ 125 (146)
T COG2172 76 --------------------KLEIRIWDQGPGIED--LEESLGPGDT----TAEGLQEGGLGLFLAKRLMD----EFSYE 125 (146)
T ss_pred --------------------eEEEEEEeCCCCCCC--HHHhcCCCCC----CCcccccccccHHHHhhhhe----eEEEE
Confidence 588999999988754 3445555521 11111233888998898875 57888
Q ss_pred EeCCCe
Q 000920 889 SEPGTG 894 (1223)
Q Consensus 889 S~~g~G 894 (1223)
+.++.+
T Consensus 126 ~~~~~~ 131 (146)
T COG2172 126 RSEDGR 131 (146)
T ss_pred eccCCc
Confidence 665553
|
|
| >PRK00095 mutL DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.019 Score=72.77 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=38.4
Q ss_pred EEEEEEecCCCCCHHhHhhhcCCCcccCCCCC------CCCCCcccHHHHHHHHHHHcCCEEEEEEeC
Q 000920 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTS------RTYGGTGIGLSISRCLVELMGGEIGFVSEP 891 (1223)
Q Consensus 830 l~IsV~DTGiGI~~e~~~rLFepF~q~d~sts------r~~gGTGLGLsI~k~LVelmgG~I~v~S~~ 891 (1223)
..|+|+|+|.||+++.+..+|.++...+-.+- ..+|--|.||+-...+ +.+.+.|..
T Consensus 52 ~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~ 114 (617)
T PRK00095 52 KLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRT 114 (617)
T ss_pred EEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEec
Confidence 56999999999999999999998875432221 2334456677644443 356666654
|
|
| >PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.034 Score=54.72 Aligned_cols=106 Identities=18% Similarity=0.186 Sum_probs=72.2
Q ss_pred EEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEE-EEeCCCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 000920 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC-FMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161 (1223)
Q Consensus 1083 rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlI-lmDi~MP~MDG~eatr~IR~~e~~~~~~i~~ 1161 (1223)
||||||||..-+.-+..+|+=.|..+..+.+.+- ..... ...++.+ +....++ ...+.++.+-+.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~-~~~~~~~~v~~g~~~--~~~~~l~~l~~~---------- 66 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADW-SSPWEACAVILGSCS--KLAELLKELLKW---------- 66 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhh-hcCCcEEEEEecCch--hHHHHHHHHHhh----------
Confidence 5999999999999999999999999999986554 22222 2345544 4444444 223333333321
Q ss_pred CCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 000920 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219 (1223)
Q Consensus 1162 g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1219 (1223)
..++|++.+.......... .+-+-|..|++..+|...+++-
T Consensus 67 ------------~~~~Pvlllg~~~~~~~~~-----nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 67 ------------APHIPVLLLGEHDSPEELP-----NVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred ------------CCCCCEEEECCCCcccccc-----CeeEecCCCCCHHHHHHHHHHh
Confidence 3478999998776551111 1555689999999999998863
|
g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO). |
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.02 Score=69.29 Aligned_cols=176 Identities=22% Similarity=0.280 Sum_probs=112.6
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.++|+|||++..+..+...|+..|+.|..+.+..+|...+... .++++++|..+++ ..|..+. +..+..
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~-------~~~lvl~Di~mp~-~~Gl~ll---~~i~~~ 73 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES-------PFDLVLLDIRMPG-MDGLELL---KEIKSR 73 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC-------CCCEEEEecCCCC-CchHHHH---HHHHhh
Confidence 4699999999999999999999999999999999999988654 3688999987763 3344433 333332
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhh-----hc---CC-Cccc--
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQ-----KR---KK-PSLG-- 1076 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~-----~~---~~-~~~~-- 1076 (1223)
. ..+|.+++.+.+ +-...-+....|..+|+.||+.+..|...+............ .. .. .-.+
T Consensus 74 ~-----~~~pVI~~Tg~g-~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S 147 (464)
T COG2204 74 D-----PDLPVIVMTGHG-DIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGES 147 (464)
T ss_pred C-----CCCCEEEEeCCC-CHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecC
Confidence 2 257777665543 333344555678889999999988887665443321110000 00 00 0000
Q ss_pred ------------cCCCCcEEEEEecChhHHHHHHHHHhhCCC-------EEEEECCHHHHHHH
Q 000920 1077 ------------HLLKGKQILVVDDNMVNRRVAEGALKKHGA-------IVTCVDCGRAAVDK 1120 (1223)
Q Consensus 1077 ------------~~~~~~rILVVDDn~~n~~vl~~~L~~~G~-------~V~~a~~G~eAl~~ 1120 (1223)
--.+...|||.-..-.=.++++.++-+.+- .+-|+.=..+.++.
T Consensus 148 ~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ES 210 (464)
T COG2204 148 PAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLES 210 (464)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHH
Confidence 001234688888888888888888876652 34455545555543
|
|
| >COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.08 Score=52.02 Aligned_cols=110 Identities=30% Similarity=0.442 Sum_probs=76.3
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHH-HHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHH
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQ-LACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~-~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~ 1004 (1223)
.+.++|+|||++..+..+...|+.+|..+..+.++. +|+..+.... .++++++|..+.... |..+. +..
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~------~~dlii~D~~mp~~~-G~~~~---~~l 73 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP------QPDLILLDINMPGMD-GIELL---RRL 73 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC------CCCEEEEeCCCCCCC-HHHHH---HHH
Confidence 467899999999999999999999999999999996 9988876531 467899998877433 33333 233
Q ss_pred HhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccc
Q 000920 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSV 1051 (1223)
Q Consensus 1005 ~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~ 1051 (1223)
+.. ....| ++.+...............|...++.||+....
T Consensus 74 ~~~-----~~~~p-vv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~ 114 (130)
T COG0784 74 RAR-----GPNIP-VILLTAYADEADRERALAAGADDYLTKPIFLEE 114 (130)
T ss_pred HhC-----CCCCC-EEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHH
Confidence 322 13567 444443333332344455778889999976544
|
|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.051 Score=71.92 Aligned_cols=119 Identities=22% Similarity=0.239 Sum_probs=84.4
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.++++|+|||++.....+...|+.+|+.+..+.++.+|+..+.. ..++++++|..++... |..+.. ..+
T Consensus 689 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-------~~~dlil~D~~mp~~~-G~~~~~---~ir 757 (921)
T PRK15347 689 WQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ-------HRFDLVLMDIRMPGLD-GLETTQ---LWR 757 (921)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-------CCCCEEEEeCCCCCCC-HHHHHH---HHH
Confidence 45789999999999999999999999999999999999987654 3578899998876533 333322 222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
..... .....|.+++ ...............|...++.||+....|...+.
T Consensus 758 ~~~~~-~~~~~pii~l-t~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~ 807 (921)
T PRK15347 758 DDPNN-LDPDCMIVAL-TANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALE 807 (921)
T ss_pred hchhh-cCCCCcEEEE-eCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Confidence 21100 1123454444 33444455566677899999999999888876654
|
|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.053 Score=70.68 Aligned_cols=195 Identities=17% Similarity=0.217 Sum_probs=113.5
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.+.++|+|||++.....+...|+.+|+.+..+.++.+|+..+.. ..++++++|..+++. .|..... ..+
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~-------~~~Dlvl~D~~mp~~-~G~e~~~---~ir 592 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP-------DEYDLVLLDIQLPDM-TGLDIAR---ELR 592 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc-------CCCCEEEEcCCCCCC-CHHHHHH---HHH
Confidence 46789999999999999999999999999999999999988753 356899999877653 2333332 223
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEE
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQIL 1085 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rIL 1085 (1223)
.... ....|.++++..... .........|...++.||+....|..++........... ....... ..
T Consensus 593 ~~~~---~~~~~~ii~~ta~~~-~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~~~~---~~~~~~~------~~ 659 (779)
T PRK11091 593 ERYP---REDLPPLVALTANVL-KDKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDTQDDEE---STVTTEE------SS 659 (779)
T ss_pred hccc---cCCCCcEEEEECCch-HhHHHHHHCCCCEEEECCCCHHHHHHHHHHHhccccccc---ccccccc------cc
Confidence 2211 013334444443332 334555678899999999998888776654322111000 0000000 00
Q ss_pred EEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHH
Q 000920 1086 VVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR 1149 (1223)
Q Consensus 1086 VVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR 1149 (1223)
-..++..+...+..++..+|... +.+++..+.....-.+-.++..++..|.-++.+...
T Consensus 660 ~~~~~~l~~~~l~~~~~~~g~~~-----~~~~l~~~~~~~~~~~~~l~~~l~~~d~~~~~~~ah 718 (779)
T PRK11091 660 KANEALLDIPMLEQYVELVGPKL-----ITDSLAVFEKMMPGYLSVLDSNLTARDQKGIVEEAH 718 (779)
T ss_pred cccccccCHHHHHHHHHhcCHHH-----HHHHHHHHHHhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 01455667777777777666421 334444432211111112244566777766644433
|
|
| >PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.0095 Score=60.82 Aligned_cols=67 Identities=24% Similarity=0.408 Sum_probs=41.3
Q ss_pred EEEEEecCCCCCHHhHhhhcCCCcccCCC--CCCCCCCcccH--HHHHHHHHHHcCCEEEEEEeCC-CeEEEEEEEE
Q 000920 831 LVTVEDTGVGIPLEAQVRIFTPFMQADSS--TSRTYGGTGIG--LSISRCLVELMGGEIGFVSEPG-TGSTFSFTVT 902 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~rLFepF~q~d~s--tsr~~gGTGLG--LsI~k~LVelmgG~I~v~S~~g-~GStF~f~Lp 902 (1223)
.|.|.|+|.||+.+.+.++|......... .....|-.|+| +|+. .++..+.|.|... ...+++|...
T Consensus 35 ~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 35 YIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp EEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEEe
Confidence 58999999999999999988665433220 12234567788 4432 4678899998764 3345555554
|
... |
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.076 Score=70.65 Aligned_cols=116 Identities=27% Similarity=0.333 Sum_probs=85.5
Q ss_pred ccCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHH
Q 000920 925 FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004 (1223)
Q Consensus 925 ~~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~ 1004 (1223)
..+.++|+|||++..+..+...|+.+|+.+..+.++.+|+..+... .++++++|..++... |..+...+
T Consensus 799 ~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~-------~~DlVl~D~~mP~md-G~el~~~i--- 867 (924)
T PRK10841 799 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN-------HIDIVLTDVNMPNMD-GYRLTQRL--- 867 (924)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC-------CCCEEEEcCCCCCCC-HHHHHHHH---
Confidence 3567999999999999999999999999999999999999887543 578999998876533 44433333
Q ss_pred HhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1005 ~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
+... ...|.+++.+ .............|...++.||+....|...+.
T Consensus 868 r~~~-----~~~pII~lTa-~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~ 914 (924)
T PRK10841 868 RQLG-----LTLPVIGVTA-NALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLT 914 (924)
T ss_pred HhcC-----CCCCEEEEEC-CCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHH
Confidence 3221 2456555443 334445566677899999999998887776554
|
|
| >PLN03029 type-a response regulator protein; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.11 Score=57.44 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=80.5
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCC-------------CCCCcceEEEecccccchh
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCST-------------SVLPQLALVLIDKDVWDKE 992 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~-------------~~~~~~~lvliD~~~~~~~ 992 (1223)
...++|+|||+......+...|+.+|+.+..+.++.+++..+...... .....++++++|..+....
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 356899999999999999999999999999999999998887532211 1123568999998776532
Q ss_pred hhHHHHHHHHHHHhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccc
Q 000920 993 IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLI 1053 (1223)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~ 1053 (1223)
|..+ +...+.... ....|.+++. ..............|...|+.||+....|.
T Consensus 87 -G~e~---l~~ir~~~~---~~~ipvIils-~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~ 139 (222)
T PLN03029 87 -GYDL---LKKIKESSS---LRNIPVVIMS-SENVPSRITRCLEEGAEEFFLKPVQLSDLN 139 (222)
T ss_pred -HHHH---HHHHHhccc---cCCCcEEEEe-CCCCHHHHHHHHHhCchheEECCCCHHHHH
Confidence 3332 223332211 1245655544 333344444556788889999999877664
|
|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.24 Score=60.59 Aligned_cols=186 Identities=16% Similarity=0.132 Sum_probs=109.2
Q ss_pred EEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcCC
Q 000920 930 ALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGG 1009 (1223)
Q Consensus 930 vLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1223)
+|+|||++.....+...++..|+.+..+.+..+|...+.. ..++++++|..+.+. .+..+.. ..+...
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-------~~~DlVllD~~~p~~-~g~~ll~---~l~~~~- 68 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR-------GQPDLLITDVRMPGE-DGLDLLP---QIKKRH- 68 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-------CCCCEEEEcCCCCCC-CHHHHHH---HHHHhC-
Confidence 4789999999999999999999999999999998877643 246888888776553 2333322 222211
Q ss_pred cccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEEEEec
Q 000920 1010 LEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDD 1089 (1223)
Q Consensus 1010 ~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rILVVDD 1089 (1223)
...|.++ +...............|...++.||+....+...+............. .... ...+....++.+
T Consensus 69 ----~~~~vIv-lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~-~~~~---~~~~~~~~lig~ 139 (463)
T TIGR01818 69 ----PQLPVIV-MTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHAQEQVAL-PADA---GEAEDSAELIGE 139 (463)
T ss_pred ----CCCeEEE-EeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHHHHHHHhh-hhhh---hccccccceeec
Confidence 1344444 433333444455567888899999999888777654322211111100 0000 001123468899
Q ss_pred ChhHHHHHHHHHhhCCCEEEEE-----CCHHHHHHHh----CCCCCccEEEEeCCC
Q 000920 1090 NMVNRRVAEGALKKHGAIVTCV-----DCGRAAVDKL----TPPHNFDACFMDLQM 1136 (1223)
Q Consensus 1090 n~~n~~vl~~~L~~~G~~V~~a-----~~G~eAl~~l----~~~~~~DlIlmDi~M 1136 (1223)
++.++.++..+.+..+..+... ..|++.+... .....--+|..||..
T Consensus 140 s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~ 195 (463)
T TIGR01818 140 APAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAA 195 (463)
T ss_pred CHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCC
Confidence 9999999888766444332222 2355544322 211223456667654
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.088 Score=57.11 Aligned_cols=112 Identities=22% Similarity=0.297 Sum_probs=75.4
Q ss_pred EEEEecChhhhHHHHHHHHHhc-cceE-EEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 929 RALVIDDKSIRAEVTRYHLQRL-EMAV-HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~l-g~~v-~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
++|+|||++..+++-+.+++.+ |+.+ -.+.++++|...+.... .+++++|.-+++.. |+.+. ..++.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~-------pDLILLDiYmPd~~-Gi~lL---~~ir~ 70 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK-------PDLILLDIYMPDGN-GIELL---PELRS 70 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhC-------CCEEEEeeccCCCc-cHHHH---HHHHh
Confidence 6899999999999998888875 5554 47889999998887542 38899998776643 44433 23332
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
... ..-.+++.+. .+-....+....|.++||.||+....+..+|.
T Consensus 71 ~~~-----~~DVI~iTAA-~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~ 115 (224)
T COG4565 71 QHY-----PVDVIVITAA-SDMETIKEALRYGVVDYLIKPFTFERLQQALT 115 (224)
T ss_pred cCC-----CCCEEEEecc-chHHHHHHHHhcCchhheecceeHHHHHHHHH
Confidence 211 1223333333 23333445567899999999999888876654
|
|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.11 Score=69.37 Aligned_cols=119 Identities=24% Similarity=0.275 Sum_probs=85.0
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.+.++|+|||++.....+...|+.+|+.+..+.++.+|...+.. .+++++++|..+++. .|..+...+ +
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-------~~~dlvl~D~~mp~~-~g~~~~~~i---r 769 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ-------HAFDLALLDINLPDG-DGVTLLQQL---R 769 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC-------CCCCEEEECCCCCCC-CHHHHHHHH---H
Confidence 34589999999999999999999999999999999999988754 357899999877654 344333333 2
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
..... ....|.+ .+...............|...++.||+....|...+..
T Consensus 770 ~~~~~--~~~~pii-~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~ 819 (968)
T TIGR02956 770 AIYGA--KNEVKFI-AFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAV 819 (968)
T ss_pred hCccc--cCCCeEE-EEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHH
Confidence 22111 0114544 44444444555666788999999999998888766543
|
This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). |
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.14 Score=67.94 Aligned_cols=117 Identities=22% Similarity=0.262 Sum_probs=83.0
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.++++|+|||++.........|+.+|+.+..+.++.+|+..+... .+++++++|..+++.. |..+. +..+
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~------~~~Dlvl~D~~mp~~~-G~~~~---~~lr 749 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNS------EPFAAALVDFDLPDYD-GITLA---RQLA 749 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcC------CCCCEEEEeCCCCCCC-HHHHH---HHHH
Confidence 467899999999999999999999999999999999999876432 3578999998876533 33332 2222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
... ...|.+++. ..............|...++.||+....|...+..
T Consensus 750 ~~~-----~~~~ii~~t-~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~ 796 (914)
T PRK11466 750 QQY-----PSLVLIGFS-AHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAH 796 (914)
T ss_pred hhC-----CCCCEEEEe-CCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHH
Confidence 211 145554443 33334444455667888899999998888766543
|
|
| >COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.14 Score=59.39 Aligned_cols=114 Identities=26% Similarity=0.318 Sum_probs=81.1
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
....+++|||.+.....++..|+..|+.+..+.+++.|...+... ++++++.|..+++... ..+ ++.++
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~-------~~dlvllD~~mp~mdg-~ev---~~~lk 81 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEE-------PPDLVLLDVRMPEMDG-AEV---LNKLK 81 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhccc-------CCceEEeeccCCCccH-HHH---HHHHH
Confidence 356899999999999999999999999999999999988776532 3788899987765543 222 22232
Q ss_pred h-cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccc
Q 000920 1006 R-KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIG 1054 (1223)
Q Consensus 1006 ~-~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~ 1054 (1223)
. .+. ...+|.+++.+-+..+ ........|.++++.||+.+..|..
T Consensus 82 ~~~p~---t~~ip~i~lT~~~d~~-~~~~~~~~g~~dyl~KP~~~~~l~~ 127 (360)
T COG3437 82 AMSPS---TRRIPVILLTAYADSE-DRQRALEAGADDYLSKPISPKELVA 127 (360)
T ss_pred hcCCc---ccccceEEEeecCChH-HHHHHHHhhHHHHhcCCCCHHHHHH
Confidence 2 211 2467877776654443 3333444889999999998766543
|
|
| >PRK05559 DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.079 Score=67.25 Aligned_cols=50 Identities=28% Similarity=0.439 Sum_probs=33.8
Q ss_pred EEEEEecCCCCCHHhHhh--------hcCCCcccC---CCC-CCCCCCcccHHHHHHHHHHH
Q 000920 831 LVTVEDTGVGIPLEAQVR--------IFTPFMQAD---SST-SRTYGGTGIGLSISRCLVEL 880 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~r--------LFepF~q~d---~st-sr~~gGTGLGLsI~k~LVel 880 (1223)
.|+|.|+|.|||.+..+. +|....-.. ... ....|=.|.|++.+..+-+.
T Consensus 70 ~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~ 131 (631)
T PRK05559 70 SVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSR 131 (631)
T ss_pred cEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhheee
Confidence 489999999999998888 887643211 111 11223369999998888543
|
|
| >PRK10816 DNA-binding transcriptional regulator PhoP; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.45 Score=51.38 Aligned_cols=113 Identities=26% Similarity=0.370 Sum_probs=76.6
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
++++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|....+. .+..+ ....+..
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-------~~~dlvild~~l~~~-~g~~l---~~~lr~~ 69 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE-------HLPDIAIVDLGLPDE-DGLSL---IRRWRSN 69 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-------CCCCEEEEECCCCCC-CHHHH---HHHHHhc
Confidence 368999999999999999999999999999999998876543 346788888765442 23322 2233321
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
. ...|.+++. ...+..........|...++.||+....+...+.
T Consensus 70 ~-----~~~pii~ls-~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~ 113 (223)
T PRK10816 70 D-----VSLPILVLT-ARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQ 113 (223)
T ss_pred C-----CCCCEEEEE-cCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHH
Confidence 1 145655543 3333334445556788899999998887765543
|
|
| >PRK11173 two-component response regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.47 Score=51.95 Aligned_cols=111 Identities=22% Similarity=0.234 Sum_probs=76.5
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.++|++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|....+. .+..+. ...+..
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-------~~~dlvild~~l~~~-~g~~~~---~~lr~~ 72 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-------NDINLVIMDINLPGK-NGLLLA---RELREQ 72 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-------CCCCEEEEcCCCCCC-CHHHHH---HHHhcC
Confidence 479999999999999999999999999999999998877643 246788888776543 233332 223221
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
...|.+++. ...+..........|...++.||+....|...+
T Consensus 73 ------~~~pii~lt-~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i 114 (237)
T PRK11173 73 ------ANVALMFLT-GRDNEVDKILGLEIGADDYITKPFNPRELTIRA 114 (237)
T ss_pred ------CCCCEEEEE-CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 134555443 333333444456778889999999887775443
|
|
| >PRK10643 DNA-binding transcriptional regulator BasR; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.51 Score=50.45 Aligned_cols=113 Identities=26% Similarity=0.334 Sum_probs=75.8
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
++++++||++.....+...|+..|+.+..+.+..++...+... .++++++|....+.. +... +...+..
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-------~~d~illd~~~~~~~-g~~~---~~~l~~~ 69 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESG-------HYSLVVLDLGLPDED-GLHL---LRRWRQK 69 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC-------CCCEEEEECCCCCCC-HHHH---HHHHHhc
Confidence 3689999999999999999999999999999998888766432 357888887664432 2222 2233322
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
. ...|.+++ ....+..........|...++.||+....+...+.
T Consensus 70 ~-----~~~pii~l-s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~ 113 (222)
T PRK10643 70 K-----YTLPVLIL-TARDTLEDRVAGLDVGADDYLVKPFALEELHARIR 113 (222)
T ss_pred C-----CCCcEEEE-ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHH
Confidence 1 13455554 33333344445556788899999998877765543
|
|
| >PRK09836 DNA-binding transcriptional activator CusR; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.52 Score=50.99 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=76.2
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
++++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|...... .+..+ +...+..
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-------~~~dlvild~~~~~~-~g~~~---~~~lr~~ 69 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT-------GDYDLIILDIMLPDV-NGWDI---VRMLRSA 69 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh-------CCCCEEEEECCCCCC-CHHHH---HHHHHhc
Confidence 368999999999999999999999999999999888776533 246788888765443 22222 2233321
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
. ...|.+++ ...............|...++.||+....+...+.
T Consensus 70 ~-----~~~pii~l-s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~ 113 (227)
T PRK09836 70 N-----KGMPILLL-TALGTIEHRVKGLELGADDYLVKPFAFAELLARVR 113 (227)
T ss_pred C-----CCCCEEEE-EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHH
Confidence 1 13455444 33334444445567888899999999887766543
|
|
| >PRK09468 ompR osmolarity response regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.56 Score=51.29 Aligned_cols=114 Identities=21% Similarity=0.231 Sum_probs=77.6
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
..+++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|...... .+..+ ....+.
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-------~~~dlvild~~l~~~-~g~~~---~~~lr~ 73 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR-------ESFHLMVLDLMLPGE-DGLSI---CRRLRS 73 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-------CCCCEEEEeCCCCCC-CHHHH---HHHHHh
Confidence 3579999999999999999999999999999999988776543 346788888766543 23322 223332
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ...|.+++ +...+..........|...++.||+....|...+.
T Consensus 74 ~~-----~~~pii~l-s~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~ 118 (239)
T PRK09468 74 QN-----NPTPIIML-TAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIR 118 (239)
T ss_pred cC-----CCCCEEEE-ECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHH
Confidence 11 13455544 33334444445556788899999999877765543
|
|
| >PRK13856 two-component response regulator VirG; Provisional | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.53 Score=51.84 Aligned_cols=111 Identities=19% Similarity=0.261 Sum_probs=76.4
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
++|++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|....+. .+..+ +...+..
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-------~~~dlvi~d~~l~~~-~g~~l---~~~i~~~- 70 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS-------ETVDVVVVDLNLGRE-DGLEI---VRSLATK- 70 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh-------CCCCEEEEeCCCCCC-CHHHH---HHHHHhc-
Confidence 68999999999999999999999999999999988876543 246788888766543 23332 2333321
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
...|.+++................|...++.||+....|...+
T Consensus 71 -----~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i 113 (241)
T PRK13856 71 -----SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARI 113 (241)
T ss_pred -----CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHH
Confidence 1456655543232333344556778889999999987776544
|
|
| >PRK10766 DNA-binding transcriptional regulator TorR; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.75 Score=49.49 Aligned_cols=111 Identities=21% Similarity=0.237 Sum_probs=75.5
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.++++|||++.....+...++..|+.+..+.+..++...+.. ..++++++|...... .+..+ +...+..
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-------~~~dlvild~~l~~~-~g~~~---~~~lr~~ 71 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN-------QHVDLILLDINLPGE-DGLML---TRELRSR 71 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-------CCCCEEEEeCCCCCC-CHHHH---HHHHHhC
Confidence 478999999999999999999999999999999998876543 246788888765442 23222 2233321
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
...|.+++. ...+..........|...++.||+....|...+
T Consensus 72 ------~~~~ii~l~-~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i 113 (221)
T PRK10766 72 ------STVGIILVT-GRTDSIDRIVGLEMGADDYVTKPLELRELLVRV 113 (221)
T ss_pred ------CCCCEEEEE-CCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHH
Confidence 134555443 333444444555788889999999887766543
|
|
| >PRK10336 DNA-binding transcriptional regulator QseB; Provisional | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.79 Score=48.95 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=74.2
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
++++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|....+. .+... +...+..
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-------~~~dlvild~~l~~~-~g~~~---~~~i~~~ 69 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS-------APYDAVILDLTLPGM-DGRDI---LREWREK 69 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-------CCCCEEEEECCCCCC-CHHHH---HHHHHhc
Confidence 368999999999999999999999999988988888776532 246788888766542 23322 2233321
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
. ...|.+++ ....+..........|...++.||+....+...+
T Consensus 70 ~-----~~~~ii~l-t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i 112 (219)
T PRK10336 70 G-----QREPVLIL-TARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 (219)
T ss_pred C-----CCCcEEEE-ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHH
Confidence 1 13454444 3333333334455678889999999877776544
|
|
| >TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.75 Score=49.69 Aligned_cols=113 Identities=23% Similarity=0.232 Sum_probs=75.9
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccch-hhhHHHHHHHHHHHhc
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDK-EIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~-~~~~~~~~~~~~~~~~ 1007 (1223)
+++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|....+. ..+..+. ...+..
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-------~~~dlvild~~l~~~~~~g~~~~---~~i~~~ 71 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ-------RLPDLAIIDIGLGEEIDGGFMLC---QDLRSL 71 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh-------CCCCEEEEECCCCCCCCCHHHHH---HHHHhc
Confidence 68999999999999999999999999988898888876643 245788888776542 1233332 222221
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
. ...|.+++. ..............|...++.||+....+...+.
T Consensus 72 ~-----~~~pii~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~ 115 (227)
T TIGR03787 72 S-----ATLPIIFLT-ARDSDFDTVSGLRLGADDYLTKDISLPHLLARIT 115 (227)
T ss_pred C-----CCCCEEEEE-CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 1 135655543 3333344445567788899999998777765543
|
This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator. |
| >PRK00742 chemotaxis-specific methylesterase; Provisional | Back alignment and domain information |
|---|
Probab=92.02 E-value=4.1 Score=48.13 Aligned_cols=105 Identities=18% Similarity=0.166 Sum_probs=67.2
Q ss_pred CcEEEEecChhhhHHHHHHHHHhc-cceEE-EeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHH
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRL-EMAVH-VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~l-g~~v~-~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~ 1004 (1223)
..++|+|||++.....+...|... ++.+. .+.+..++...+.. ..++++++|..+.... +.... +.+
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~-------~~~DlVllD~~mp~~d-gle~l---~~i 71 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK-------LNPDVITLDVEMPVMD-GLDAL---EKI 71 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh-------hCCCEEEEeCCCCCCC-hHHHH---HHH
Confidence 358999999999999998899876 77776 78899988876543 2467888887765432 33222 222
Q ss_pred HhcCCcccccCCCeEEEEeccCC-ccchhhhhcCCceeeeccccc
Q 000920 1005 RRKGGLEISRNLPKIFLLATSIS-ETDRDELKSDGIVTLLTKPLR 1048 (1223)
Q Consensus 1005 ~~~~~~~~~~~~p~i~ll~~s~~-~~~~~~~~~~g~~~~l~KPl~ 1048 (1223)
+... ..|.+++...... ..........|...++.||+.
T Consensus 72 ~~~~------~~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 72 MRLR------PTPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred HHhC------CCCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 2211 2455554432211 122234456788899999984
|
|
| >COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.45 Score=49.06 Aligned_cols=114 Identities=21% Similarity=0.233 Sum_probs=78.0
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
..|+|||+......+...+++-|+.|..+.+.++++...... .+...++|...-+ ..|......+.+.+.
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~-------~PayAvvDlkL~~-gsGL~~i~~lr~~~~-- 80 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTA-------PPAYAVVDLKLGD-GSGLAVIEALRERRA-- 80 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcC-------CCceEEEEeeecC-CCchHHHHHHHhcCC--
Confidence 578999999999999999999999999999999999887654 3344555655433 445544433333221
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCC
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQED 1059 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~ 1059 (1223)
. -.++++..-.+....-+.-..|...|+.||-....+...+...
T Consensus 81 ------d-~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 81 ------D-MRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred ------c-ceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 1 1234444333444455556678889999999888877776654
|
|
| >PRK11517 transcriptional regulatory protein YedW; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.78 Score=49.24 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=76.0
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
++++++||++.....+...++..|+.+..+.+..++...+.. ..++++++|....... +... +...+..
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~-------~~~dlvi~d~~~~~~~-g~~~---~~~l~~~ 69 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK-------DDYALIILDIMLPGMD-GWQI---LQTLRTA 69 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-------CCCCEEEEECCCCCCC-HHHH---HHHHHcC
Confidence 368999999999999999999999999999999988876543 3467888887655432 2222 2233321
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
...|.+++ ....+..........|...++.||+....+...+.
T Consensus 70 ------~~~~ii~l-s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~ 112 (223)
T PRK11517 70 ------KQTPVICL-TARDSVDDRVRGLDSGANDYLVKPFSFSELLARVR 112 (223)
T ss_pred ------CCCCEEEE-ECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 13455544 33334444445567788899999998877765543
|
|
| >TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.71 Score=49.42 Aligned_cols=115 Identities=24% Similarity=0.341 Sum_probs=75.5
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.+++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|....+.. +.. .++..+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-------~~~d~vi~d~~~~~~~-g~~---~~~~l~~~ 71 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE-------RGPDLILLDWMLPGTS-GIE---LCRRLRRR 71 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh-------cCCCEEEEECCCCCCc-HHH---HHHHHHcc
Confidence 478999999999999999999999999988999888877643 2467888887665432 222 22333321
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ....|.+++ ...............|...++.||+....+...+.
T Consensus 72 ~~---~~~~~ii~l-s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~ 117 (226)
T TIGR02154 72 PE---TRAIPIIML-TARGEEEDRVRGLETGADDYITKPFSPRELLARIK 117 (226)
T ss_pred cc---CCCCCEEEE-ecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHH
Confidence 10 013454444 33333333444556788899999998877765443
|
PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well. |
| >PRK10701 DNA-binding transcriptional regulator RstA; Provisional | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.8 Score=50.14 Aligned_cols=110 Identities=19% Similarity=0.191 Sum_probs=75.8
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
+++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|...... .+.... ...+..
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~-------~~~dlvild~~l~~~-~g~~~~---~~ir~~- 70 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR-------EQPDLVLLDIMLPGK-DGMTIC---RDLRPK- 70 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh-------CCCCEEEEeCCCCCC-CHHHHH---HHHHhc-
Confidence 68999999999999999999999999999999988877643 246788888766543 233332 222221
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
...|.+++. ..............|...++.||+....+...+
T Consensus 71 -----~~~pii~l~-~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i 112 (240)
T PRK10701 71 -----WQGPIVLLT-SLDSDMNHILALEMGACDYILKTTPPAVLLARL 112 (240)
T ss_pred -----CCCCEEEEE-CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHH
Confidence 134555443 333334444556788889999999887776544
|
|
| >PRK10161 transcriptional regulator PhoB; Provisional | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.77 Score=49.75 Aligned_cols=115 Identities=23% Similarity=0.331 Sum_probs=76.6
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.+++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|....+.. +... +...+..
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-------~~~dlvild~~l~~~~-g~~~---~~~l~~~ 71 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-------PWPDLILLDWMLPGGS-GIQF---IKHLKRE 71 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-------cCCCEEEEeCCCCCCC-HHHH---HHHHHhc
Confidence 478999999999999999999999999999999988876642 2467888887665432 2222 2233322
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ....|.+++. ...+..........|...++.||+....|...+.
T Consensus 72 ~~---~~~~pvi~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~ 117 (229)
T PRK10161 72 SM---TRDIPVVMLT-ARGEEEDRVRGLETGADDYITKPFSPKELVARIK 117 (229)
T ss_pred cc---cCCCCEEEEE-CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 11 1134555543 3333444445567888899999998877765543
|
|
| >COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.46 Score=57.80 Aligned_cols=114 Identities=20% Similarity=0.210 Sum_probs=77.6
Q ss_pred EEEEecChhhhHHHHHHHHH--hccceE-EEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 929 RALVIDDKSIRAEVTRYHLQ--RLEMAV-HVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~--~lg~~v-~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
+||+|||++..++-+...+. .+|+.+ -.|.++.+|++.+... ++++++.|-.++.. .|+.+...+++..
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~-------~pDiviTDI~MP~m-dGLdLI~~ike~~ 74 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQET-------QPDIVITDINMPGM-DGLDLIKAIKEQS 74 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhc-------CCCEEEEecCCCCC-cHHHHHHHHHHhC
Confidence 68999999999998887764 456664 4789999999998764 57888999877654 3554443333311
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQED 1059 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~ 1059 (1223)
.-...++++.-..-.-.......|+..+|.||+.-..|..+|...
T Consensus 75 ---------p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki 119 (475)
T COG4753 75 ---------PDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKI 119 (475)
T ss_pred ---------CCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHH
Confidence 123344443322223344555789999999999988888877543
|
|
| >PRK10529 DNA-binding transcriptional activator KdpE; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.8 Score=49.38 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=75.8
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.+++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|..+.+. .+..+. ...+..
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-------~~~dlvild~~l~~~-~g~~~~---~~lr~~ 70 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-------RKPDLIILDLGLPDG-DGIEFI---RDLRQW 70 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc-------CCCCEEEEeCCCCCC-CHHHHH---HHHHcC
Confidence 368999999999999999999999999999898888765532 246788888766543 233322 222221
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
...|.+++. ...+..........|...++.||+....+...+.
T Consensus 71 ------~~~pvi~lt-~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~ 113 (225)
T PRK10529 71 ------SAIPVIVLS-ARSEESDKIAALDAGADDYLSKPFGIGELQARLR 113 (225)
T ss_pred ------CCCCEEEEE-CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 145655543 3333334445566788899999999877765543
|
|
| >COG4566 TtrR Response regulator [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.59 Score=50.06 Aligned_cols=116 Identities=22% Similarity=0.225 Sum_probs=79.1
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.-|-+|||+...++.+...|...|+.+....|.++-+.... ....-.++.|..++. ..|..++..+.+.
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~-------~~~pGclllDvrMPg-~sGlelq~~L~~~--- 73 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP-------LDRPGCLLLDVRMPG-MSGLELQDRLAER--- 73 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhcc-------CCCCCeEEEecCCCC-CchHHHHHHHHhc---
Confidence 35789999999999999999999999999988876654421 122345667766654 3455555444332
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDP 1060 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~ 1060 (1223)
+ ..+|.+++..-+-- .-.-+....|.+++|.||++-+.|+..++...
T Consensus 74 ~-----~~~PVIfiTGhgDI-pmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al 120 (202)
T COG4566 74 G-----IRLPVIFLTGHGDI-PMAVQAMKAGAVDFLEKPFSEQDLLDAVERAL 120 (202)
T ss_pred C-----CCCCEEEEeCCCCh-HHHHHHHHcchhhHHhCCCchHHHHHHHHHHH
Confidence 1 26788877643322 23334456789999999999999888776543
|
|
| >PRK10955 DNA-binding transcriptional regulator CpxR; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=1 Score=48.73 Aligned_cols=110 Identities=26% Similarity=0.281 Sum_probs=74.4
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
+++++||++.....+...|+..|+.+..+.+..++...+. ..++++++|....+.. +..+ ++..+...
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--------~~~d~vl~d~~~~~~~-g~~~---~~~l~~~~ 70 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--------DSIDLLLLDVMMPKKN-GIDT---LKELRQTH 70 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh--------cCCCEEEEeCCCCCCc-HHHH---HHHHHhcC
Confidence 6899999999999999999999999998889988887642 1357888887665432 3222 23333221
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
..|.+++ ...............|...++.||+....+...+.
T Consensus 71 ------~~~ii~l-t~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~ 112 (232)
T PRK10955 71 ------QTPVIML-TARGSELDRVLGLELGADDYLPKPFNDRELVARIR 112 (232)
T ss_pred ------CCcEEEE-ECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHH
Confidence 2454444 33333334445567788899999998877765553
|
|
| >cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain | Back alignment and domain information |
|---|
Probab=91.28 E-value=3.4 Score=41.38 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=71.7
Q ss_pred ecChhHHHHHHHHHhhCCCEEEEECC---HHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHH-hhhhhhhhhhhcCC
Q 000920 1088 DDNMVNRRVAEGALKKHGAIVTCVDC---GRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR-HLENEINEQIASGE 1163 (1223)
Q Consensus 1088 DDn~~n~~vl~~~L~~~G~~V~~a~~---G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR-~~e~~~~~~i~~g~ 1163 (1223)
|.+..=...+..+|+..||+|..... .++.++.+. ...+|+|.+-..|+.. .+.++.+. .+... |
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~-~~~~d~V~iS~~~~~~--~~~~~~~~~~L~~~-------~- 78 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAI-QEDVDVIGLSSLSGGH--MTLFPEVIELLREL-------G- 78 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcccchhh--HHHHHHHHHHHHhc-------C-
Confidence 55556667788899999999988553 566666665 4679999998877533 23333322 22110 0
Q ss_pred cccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHH
Q 000920 1164 SSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217 (1223)
Q Consensus 1164 ~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~ 1217 (1223)
...+ .|++-+....++.++..++|+|+|+..=-+.++...-++
T Consensus 79 ----------~~~i-~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 79 ----------AGDI-LVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred ----------CCCC-EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 1133 455565566778899999999999998888877765543
|
This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation. |
| >PRK10840 transcriptional regulator RcsB; Provisional | Back alignment and domain information |
|---|
Probab=91.25 E-value=1.1 Score=48.81 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=74.5
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccc--eEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccch--hhhHHHHHHHH
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEM--AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDK--EIGLVLHYMLK 1002 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~--~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~--~~~~~~~~~~~ 1002 (1223)
+++++++||++.....+...|+..+. .+..+.+..++...+.. ..++++++|....+. ..+..+. +
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-------~~~DlvllD~~l~~~~~~~g~~~~---~ 72 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK-------LDAHVLITDLSMPGDKYGDGITLI---K 72 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh-------CCCCEEEEeCcCCCCCCCCHHHHH---H
Confidence 46899999999999989999987665 26677888888876643 235788888766542 1333332 2
Q ss_pred HHHhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1003 QQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1003 ~~~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
..+... ...| +++++...+..........|...|+.||.....+..++.
T Consensus 73 ~l~~~~-----~~~~-iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~ 121 (216)
T PRK10840 73 YIKRHF-----PSLS-IIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALA 121 (216)
T ss_pred HHHHHC-----CCCc-EEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHH
Confidence 322211 1234 444444434444455667899999999988777765543
|
|
| >TIGR02875 spore_0_A sporulation transcription factor Spo0A | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.98 Score=50.64 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=75.8
Q ss_pred cEEEEecChhhhHHHHHHHHHhc-cce-EEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRL-EMA-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~l-g~~-v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.++|++||++.....+...+... ++. +..+.+..++...+.. ..++++++|..+.... |..+.. ..+
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~-------~~~DlvllD~~mp~~d-G~~~l~---~i~ 71 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE-------QQPDVVVLDIIMPHLD-GIGVLE---KLN 71 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh-------cCCCEEEEeCCCCCCC-HHHHHH---HHH
Confidence 57999999999999888888754 444 4468899999887653 2468889987765432 333322 222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
.... ...|.++++...............|...++.||+....|...+..
T Consensus 72 ~~~~----~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~ 120 (262)
T TIGR02875 72 EIEL----SARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQ 120 (262)
T ss_pred hhcc----ccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Confidence 2111 122455555544444444556678888999999998887766543
|
Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species. |
| >TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.26 Score=62.55 Aligned_cols=51 Identities=24% Similarity=0.380 Sum_probs=33.1
Q ss_pred EEEEEecCCCCCHHh--------Hhhhc-CCCccc--CCCCCC-CCCCcccHHHHHHHHHHHc
Q 000920 831 LVTVEDTGVGIPLEA--------QVRIF-TPFMQA--DSSTSR-TYGGTGIGLSISRCLVELM 881 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~--------~~rLF-epF~q~--d~stsr-~~gGTGLGLsI~k~LVelm 881 (1223)
.|+|.|+|.|||.+. .+-+| .+.... +....+ ..|=.|.||+.+..+-+.+
T Consensus 63 ~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~l 125 (625)
T TIGR01055 63 SIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKRV 125 (625)
T ss_pred eEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCeE
Confidence 389999999999887 66677 332211 111111 2233699999999988743
|
This protein is active as an alpha(2)beta(2) heterotetramer. |
| >CHL00148 orf27 Ycf27; Reviewed | Back alignment and domain information |
|---|
Probab=91.11 E-value=1.2 Score=48.39 Aligned_cols=113 Identities=20% Similarity=0.214 Sum_probs=76.3
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
.++++++||++.....+...++..|+.+..+.+..+++..+.. ..++++++|....+.. +.... ...+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~-------~~~d~illd~~~~~~~-g~~~~---~~l~~ 74 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK-------EQPDLVILDVMMPKLD-GYGVC---QEIRK 74 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh-------cCCCEEEEeCCCCCCC-HHHHH---HHHHh
Confidence 4689999999999999999999999999888888888776543 2457888887665432 33332 22222
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
. ...|.+++. ..............|...++.||+....|...+.
T Consensus 75 ~------~~~~ii~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~ 118 (240)
T CHL00148 75 E------SDVPIIMLT-ALGDVSDRITGLELGADDYVVKPFSPKELEARIR 118 (240)
T ss_pred c------CCCcEEEEE-CCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHH
Confidence 1 135555543 3333333345556788899999998887765543
|
|
| >PRK09958 DNA-binding transcriptional activator EvgA; Provisional | Back alignment and domain information |
|---|
Probab=90.99 E-value=1.1 Score=47.58 Aligned_cols=113 Identities=16% Similarity=0.239 Sum_probs=74.7
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEE-EeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVH-VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~-~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
++++++||++.....+...|+..|+.+. .+.+..++...+.. ..++++++|....+.. +..+ +...+.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-------~~~dlvi~d~~~~~~~-g~~~---~~~l~~ 69 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET-------LKPDIVIIDVDIPGVN-GIQV---LETLRK 69 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc-------cCCCEEEEeCCCCCCC-HHHH---HHHHHh
Confidence 4689999999999999999999999986 68888888876543 2457888887654432 2222 222222
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ...| ++++...............|...++.||+....+...+.
T Consensus 70 ~~-----~~~~-ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~ 114 (204)
T PRK09958 70 RQ-----YSGI-IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIE 114 (204)
T ss_pred hC-----CCCe-EEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHH
Confidence 11 1234 344443334444455567888899999998877766554
|
|
| >PRK10046 dpiA two-component response regulator DpiA; Provisional | Back alignment and domain information |
|---|
Probab=90.87 E-value=1.1 Score=49.09 Aligned_cols=114 Identities=17% Similarity=0.216 Sum_probs=75.4
Q ss_pred CcEEEEecChhhhHHHHHHHHHhc-cc-eEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHH
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRL-EM-AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~l-g~-~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~ 1004 (1223)
..+++++||++.....+...+.+. ++ .+..+.+..+|...+... .++++++|..+.+.. |..+. +..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~-------~pdlvllD~~mp~~~-gle~~---~~l 72 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERF-------KPGLILLDNYLPDGR-GINLL---HEL 72 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhc-------CCCEEEEeCCCCCCc-HHHHH---HHH
Confidence 368999999999999888888864 67 467889999998776532 457888888765533 33332 222
Q ss_pred HhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1005 ~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
+... ...| +++++..............|...++.||+....|...+.
T Consensus 73 ~~~~-----~~~~-iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~ 119 (225)
T PRK10046 73 VQAH-----YPGD-VVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLT 119 (225)
T ss_pred HhcC-----CCCC-EEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHH
Confidence 2211 1233 344443333334445557788899999998888776654
|
|
| >PRK11083 DNA-binding response regulator CreB; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=1.3 Score=47.45 Aligned_cols=113 Identities=24% Similarity=0.209 Sum_probs=74.4
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.+++++||++...+.+...|...|+.+..+.+..++...+.. ..++++++|....+. .+... ++..+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-------~~~dlvl~d~~~~~~-~g~~~---~~~l~~~ 72 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ-------QPPDLVILDVGLPDI-SGFEL---CRQLLAF 72 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc-------CCCCEEEEeCCCCCC-CHHHH---HHHHHhh
Confidence 479999999999998898999999999888888888766532 245778888766543 23222 2233322
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
. ...|.+++. ..............|...++.||+....+...+.
T Consensus 73 ~-----~~~~ii~ls-~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~ 116 (228)
T PRK11083 73 H-----PALPVIFLT-ARSDEVDRLVGLEIGADDYVAKPFSPREVAARVR 116 (228)
T ss_pred C-----CCCCEEEEE-cCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHH
Confidence 1 134555443 3333333344556788899999998877765543
|
|
| >PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure | Back alignment and domain information |
|---|
Probab=90.74 E-value=1.1 Score=44.53 Aligned_cols=96 Identities=14% Similarity=0.153 Sum_probs=70.5
Q ss_pred HHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCC--CCHHHHHHHHHhhhhhhhhhhhcCCcccccccCC
Q 000920 1095 RVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE--MDGFQATWQIRHLENEINEQIASGESSAEMFGNV 1172 (1223)
Q Consensus 1095 ~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~--MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~ 1172 (1223)
..+...|++.|++|..+.+.++|+..+.....++.|++|+. ++ ....++++.||+..
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~-------------------- 65 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRERN-------------------- 65 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHHS--------------------
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHhC--------------------
Confidence 44667788899999999999999999987677899999986 11 12345777777643
Q ss_pred CCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHH
Q 000920 1173 GLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLY 1213 (1223)
Q Consensus 1173 ~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~ 1213 (1223)
..+||.+++.....+..-...-.-.++|+-..-+-.+++
T Consensus 66 --~~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~fi 104 (115)
T PF03709_consen 66 --FGIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDTAEFI 104 (115)
T ss_dssp --TT-EEEEEESCCHHHCCCHHHHCCESEEEETTTTTHHHH
T ss_pred --CCCCEEEEecCCCcccCCHHHHhhccEEEEecCCCHHHH
Confidence 268999999876555555556667889998876554443
|
Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D. |
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.78 Score=55.79 Aligned_cols=114 Identities=23% Similarity=0.276 Sum_probs=78.7
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
..++|+|||++.....+...++..|+.+..+.+..+|...+... .++++++|..+.+.. +..+. ...+.
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~-------~~dlvilD~~lp~~~-g~~ll---~~l~~ 73 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNRE-------KVDLVISDLRMDEMD-GMQLF---AEIQK 73 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC-------CCCEEEEcCCCCCCC-HHHHH---HHHHh
Confidence 36899999999999999999999999999999999998776532 457888887765432 33332 22222
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ...|.+++ ....+..........|...++.||+....|...+.
T Consensus 74 ~~-----~~~pvIvl-t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~ 118 (444)
T PRK15115 74 VQ-----PGMPVIIL-TAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAID 118 (444)
T ss_pred cC-----CCCcEEEE-ECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHH
Confidence 11 23454444 33333344445567888899999998877766553
|
|
| >PRK14084 two-component response regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=1.1 Score=49.42 Aligned_cols=112 Identities=15% Similarity=0.256 Sum_probs=72.1
Q ss_pred cEEEEecChhhhHHHHHHHHHhccc--eEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEM--AVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~--~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
++++++||++.....+...+..++. .+..+.+..+++..+.. ..++++++|.++.+. .|..+...+ +
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~-------~~~dlv~lDi~m~~~-~G~~~~~~i---~ 69 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI-------NQYDIIFLDINLMDE-SGIELAAKI---Q 69 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh-------cCCCEEEEeCCCCCC-CHHHHHHHH---H
Confidence 3689999999999999999988763 46678888888877643 246788998877643 344433322 2
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
... ..|.++.++.. .. ........|...++.||+....+..++..
T Consensus 70 ~~~------~~~~iI~~t~~-~~-~~~~~~~~~~~~yl~KP~~~~~l~~~l~~ 114 (246)
T PRK14084 70 KMK------EPPAIIFATAH-DQ-FAVKAFELNATDYILKPFEQKRIEQAVNK 114 (246)
T ss_pred hcC------CCCEEEEEecC-hH-HHHHHHhcCCcEEEECCCCHHHHHHHHHH
Confidence 211 22334333322 22 22334456778999999988777766543
|
|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.85 Score=62.53 Aligned_cols=115 Identities=24% Similarity=0.247 Sum_probs=81.5
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
...++|+|||++..+..+...|+.+|+.+..+.+..+|+..+.. .+++++++|..+.+. .|..+... .+
T Consensus 957 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~-------~~~dlil~D~~mp~~-~g~~~~~~---i~ 1025 (1197)
T PRK09959 957 EKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM-------QHYDLLITDVNMPNM-DGFELTRK---LR 1025 (1197)
T ss_pred cCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc-------CCCCEEEEeCCCCCC-CHHHHHHH---HH
Confidence 34689999999999999999999999999999999999887743 356889999776543 23333222 22
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
... ...|.+++ ...............|...++.||+....|...+.
T Consensus 1026 ~~~-----~~~pii~l-t~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~ 1071 (1197)
T PRK09959 1026 EQN-----SSLPIWGL-TANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLS 1071 (1197)
T ss_pred hcC-----CCCCEEEE-ECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHH
Confidence 211 23565444 33344444555667889999999999887766553
|
|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
Probab=90.07 E-value=1.1 Score=59.20 Aligned_cols=115 Identities=18% Similarity=0.165 Sum_probs=77.4
Q ss_pred cCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 926 ~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
++.++++|||++.........|..+|+.+..+.+..+++..+... ...+++++++.. ...+.... ...+
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~-----~~~~DlVll~~~---~~~g~~l~---~~l~ 764 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKG-----PERFDLVLVDDR---LLDEEQAA---AALH 764 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC-----CCCceEEEECCC---CCCHHHHH---HHHH
Confidence 567899999999999999999999999999999999999887543 134677777322 11222222 2222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
... ...|.+++. ..............| ..++.||+....|...+..
T Consensus 765 ~~~-----~~ipIIvls-~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~ 810 (828)
T PRK13837 765 AAA-----PTLPIILGG-NSKTMALSPDLLASV-AEILAKPISSRTLAYALRT 810 (828)
T ss_pred hhC-----CCCCEEEEe-CCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHH
Confidence 211 244554444 333444444555667 8899999998888766543
|
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.88 Score=55.19 Aligned_cols=114 Identities=21% Similarity=0.255 Sum_probs=77.7
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
..++++|||++.....+...++.+|+.+..+.+..++...+.. ..++++++|..+.+. .|..+...+ +.
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~-------~~~DlvilD~~m~~~-~G~~~~~~i---r~ 73 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-------QVFDLVLCDVRMAEM-DGIATLKEI---KA 73 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc-------CCCCEEEEeCCCCCC-CHHHHHHHH---Hh
Confidence 4689999999999999999999999999999999998877643 246788998877553 233332222 22
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ...|.+++. ...+..........|...++.||+....+...+.
T Consensus 74 ~~-----~~~~vi~lt-~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~ 118 (441)
T PRK10365 74 LN-----PAIPVLIMT-AYSSVETAVEALKTGALDYLIKPLDFDNLQATLE 118 (441)
T ss_pred hC-----CCCeEEEEE-CCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHH
Confidence 11 134544443 3333333444556778889999998877766554
|
|
| >PRK13435 response regulator; Provisional | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.74 Score=46.40 Aligned_cols=139 Identities=14% Similarity=0.151 Sum_probs=82.9
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccceEE-EeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVH-VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~~v~-~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
..+++++|+++.....+...+...|+.+. .+++..++...+.. ..++++++|........+.... ...+
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~dliivd~~~~~~~~~~~~~---~~l~ 74 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR-------RQPDVALVDVHLADGPTGVEVA---RRLS 74 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh-------cCCCEEEEeeecCCCCcHHHHH---HHHH
Confidence 46899999999999999999998899876 67888888766532 2467888887654322233322 2222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCCCCcchhHhhhhcCCCccccCCCCcEEE
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQIL 1085 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rIL 1085 (1223)
.. ...|.+++. .... .......|...++.||+....+...+...... ... .......+.+++
T Consensus 75 ~~------~~~pii~ls-~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~----~~~----~~~~~~~~~~~~ 136 (145)
T PRK13435 75 AD------GGVEVVFMT-GNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSAR----RVG----DRASGPTPMGVF 136 (145)
T ss_pred hC------CCCCEEEEe-CCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhc----Ccc----ccCCCCCCCCcC
Confidence 21 134544443 2211 12334568889999999888776655432110 000 111123446788
Q ss_pred EEecChhH
Q 000920 1086 VVDDNMVN 1093 (1223)
Q Consensus 1086 VVDDn~~n 1093 (1223)
..+|+..|
T Consensus 137 ~~~~~~~~ 144 (145)
T PRK13435 137 LAPATLTN 144 (145)
T ss_pred CCCCCCCC
Confidence 87777654
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=89.74 E-value=1.5 Score=53.85 Aligned_cols=113 Identities=18% Similarity=0.137 Sum_probs=77.8
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.++|+|||++.....+...|++.|+.+..+.+..++...+.. ..++++++|..+.+. .+..+.. ..+..
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~-------~~~DlvllD~~lp~~-dgl~~l~---~ir~~ 72 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS-------KTPDVLLSDIRMPGM-DGLALLK---QIKQR 72 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc-------CCCCEEEECCCCCCC-CHHHHHH---HHHhh
Confidence 479999999999999999999999999999999999887753 246788888776543 2333322 22221
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
. ...|.+++. ..............|...++.||+....+...+.
T Consensus 73 ~-----~~~pvIvlt-~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~ 116 (469)
T PRK10923 73 H-----PMLPVIIMT-AHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVE 116 (469)
T ss_pred C-----CCCeEEEEE-CCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHH
Confidence 1 134555443 3333334445567788899999998777665443
|
|
| >PRK05644 gyrB DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.54 Score=59.96 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHHhccCC--CCeEEEEEE
Q 000920 734 DPGRFRQIITNLVGNSIKFTQD--KGHIFVSVH 764 (1223)
Q Consensus 734 D~~rL~QIL~NLLsNAIKfT~~--~G~I~V~v~ 764 (1223)
|+.-|.+++.-||.||+.-... ...|.|.++
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~ 66 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTIN 66 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEe
Confidence 5677999999999999983322 236666553
|
|
| >PRK10430 DNA-binding transcriptional activator DcuR; Provisional | Back alignment and domain information |
|---|
Probab=89.59 E-value=1.7 Score=48.17 Aligned_cols=115 Identities=19% Similarity=0.309 Sum_probs=72.9
Q ss_pred cEEEEecChhhhHHHHHHHHHhc-cce-EEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRL-EMA-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~l-g~~-v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.+++++||++.........|.+. ++. +..+.+..++...+... ...++++++|..+.+.. |..+. ...+
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~-----~~~~DlvilD~~~p~~~-G~eli---~~l~ 72 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNS-----DTPIDLILLDIYMQQEN-GLDLL---PVLH 72 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhc-----CCCCCEEEEecCCCCCC-cHHHH---HHHH
Confidence 37899999999999888888764 665 44678888887765421 12467888887765432 33332 2222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
... ...|.++ +....+..........|...++.||+....+..++.
T Consensus 73 ~~~-----~~~~vI~-ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~ 118 (239)
T PRK10430 73 EAG-----CKSDVIV-ISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALT 118 (239)
T ss_pred hhC-----CCCCEEE-EECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 211 1344444 444444444455667788899999998877765553
|
|
| >TIGR01059 gyrB DNA gyrase, B subunit | Back alignment and domain information |
|---|
Probab=89.43 E-value=0.52 Score=60.40 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHHHHhccCC--CCeEEEEEE
Q 000920 734 DPGRFRQIITNLVGNSIKFTQD--KGHIFVSVH 764 (1223)
Q Consensus 734 D~~rL~QIL~NLLsNAIKfT~~--~G~I~V~v~ 764 (1223)
|+.-|.+++.-||.||+.-... ...|.|.++
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~ 59 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTIN 59 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEEe
Confidence 5667999999999999983222 345666553
|
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB. |
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=89.30 E-value=1.6 Score=53.25 Aligned_cols=114 Identities=21% Similarity=0.202 Sum_probs=77.9
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
..++|+|||++.....+...+...|+.+..+.+..++...+... .++++++|..+.+. .+..+. ...+.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-------~~dlillD~~~p~~-~g~~ll---~~i~~ 72 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI-------HPDVVLMDIRMPEM-DGIKAL---KEMRS 72 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-------CCCEEEEeCCCCCC-CHHHHH---HHHHh
Confidence 45799999999999999999999999999999999998876532 46788888776543 233322 22222
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ...|.+++. ...+..........|...++.||+....+...+.
T Consensus 73 ~~-----~~~pvI~lt-~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~ 117 (457)
T PRK11361 73 HE-----TRTPVILMT-AYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQ 117 (457)
T ss_pred cC-----CCCCEEEEe-CCCCHHHHHHHHHCCccEEEecccCHHHHHHHHh
Confidence 11 245555543 3333334445567888899999998777665544
|
|
| >PRK05218 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
Probab=89.24 E-value=1.3 Score=56.27 Aligned_cols=57 Identities=18% Similarity=0.413 Sum_probs=36.6
Q ss_pred EEEEEecCCCCCHHhHhhhcCCCccc-----------C-CCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeC
Q 000920 831 LVTVEDTGVGIPLEAQVRIFTPFMQA-----------D-SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~rLFepF~q~-----------d-~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~ 891 (1223)
.|+|+|||+||+.+++...|...-.. + .....-.|-.|+|+.=| =..+-++.|.|..
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~----f~va~~v~V~Sr~ 142 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSA----FMVADKVTVITRS 142 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhh----hhccCEEEEEEcC
Confidence 38999999999999988876433221 0 01122345678888522 2335678888875
|
|
| >PRK02261 methylaspartate mutase subunit S; Provisional | Back alignment and domain information |
|---|
Probab=89.19 E-value=13 Score=38.25 Aligned_cols=118 Identities=12% Similarity=0.116 Sum_probs=84.2
Q ss_pred CcEEEEE----ecChhHHHHHHHHHhhCCCEEEEECC---HHHHHHHhCCCCCccEEEEeCCCCCCCH--HHHHHHHHhh
Q 000920 1081 GKQILVV----DDNMVNRRVAEGALKKHGAIVTCVDC---GRAAVDKLTPPHNFDACFMDLQMPEMDG--FQATWQIRHL 1151 (1223)
Q Consensus 1081 ~~rILVV----DDn~~n~~vl~~~L~~~G~~V~~a~~---G~eAl~~l~~~~~~DlIlmDi~MP~MDG--~eatr~IR~~ 1151 (1223)
+.+||+. |....-..++..+|+..||+|...-. .++.++.+. ..++|+|.+-..|+.... -++.+++|+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~-~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAI-ETDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 4578888 88888899999999999999998543 566666665 478999999988874321 2233333321
Q ss_pred hhhhhhhhhcCCcccccccCCCCCcccEEEEeccC------CHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHHhh
Q 000920 1152 ENEINEQIASGESSAEMFGNVGLWHVPILAMTADV------IQASNEQCMKCGMDDYVSKPFEDEQLYTAVARFFM 1221 (1223)
Q Consensus 1152 e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA~~------~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~l~ 1221 (1223)
. ..+++|++ -+.. ..++.+++.+.|+|......-+.++....+++.++
T Consensus 82 ~---------------------~~~~~i~v-GG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 82 G---------------------LGDILLYV-GGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred C---------------------CCCCeEEE-ECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 1 12445443 3332 35567789999999999999999999999988765
|
|
| >PRK12555 chemotaxis-specific methylesterase; Provisional | Back alignment and domain information |
|---|
Probab=88.97 E-value=4.9 Score=47.20 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=66.9
Q ss_pred cEEEEecChhhhHHHHHHHH-HhccceEE-EeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 928 LRALVIDDKSIRAEVTRYHL-QRLEMAVH-VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L-~~lg~~v~-~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
+++|+|||++..+..+...| +..++.+. .+.+..++...+.. ..++++++|..+.... +......+ +
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~-------~~pDlVllD~~mp~~~-G~e~l~~l---~ 69 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA-------QPPDVILMDLEMPRMD-GVEATRRI---M 69 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc-------cCCCEEEEcCCCCCCC-HHHHHHHH---H
Confidence 37899999999999888888 57788775 68899999887653 2468888887765432 33332222 2
Q ss_pred hcCCcccccCCCeEEEEeccCC-ccchhhhhcCCceeeecccc
Q 000920 1006 RKGGLEISRNLPKIFLLATSIS-ETDRDELKSDGIVTLLTKPL 1047 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~-~~~~~~~~~~g~~~~l~KPl 1047 (1223)
.. ...|.+++...... ..........|...++.||+
T Consensus 70 ~~------~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 70 AE------RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred HH------CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCC
Confidence 21 13565555433211 12223445678889999998
|
|
| >cd02067 B12-binding B12 binding domain (B12-BD) | Back alignment and domain information |
|---|
Probab=88.95 E-value=3.3 Score=40.92 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=61.2
Q ss_pred ecChhHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhCCCCCccEEEEeCCCCCC--CHHHHHHHHHhhhhhhhhhhhcC
Q 000920 1088 DDNMVNRRVAEGALKKHGAIVTCVD---CGRAAVDKLTPPHNFDACFMDLQMPEM--DGFQATWQIRHLENEINEQIASG 1162 (1223)
Q Consensus 1088 DDn~~n~~vl~~~L~~~G~~V~~a~---~G~eAl~~l~~~~~~DlIlmDi~MP~M--DG~eatr~IR~~e~~~~~~i~~g 1162 (1223)
|....-..++..+|+..||+|.... ..++.++.+. ..++|+|.+-..|... +..++.+.+|+..+
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~-~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~--------- 79 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK-EEDADAIGLSGLLTTHMTLMKEVIEELKEAGL--------- 79 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHHcCC---------
Confidence 5556667889999999999996643 2455566665 4689999888775443 22334444443210
Q ss_pred CcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEEC
Q 000920 1163 ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205 (1223)
Q Consensus 1163 ~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~K 1205 (1223)
..+ .|++.+.......+.+.+.|+|.|+..
T Consensus 80 ------------~~~-~i~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 80 ------------DDI-PVLVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred ------------CCC-eEEEECCCCChhHHHHHHcCCeEEECC
Confidence 133 455666655555678899999888763
|
This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. |
| >PRK14083 HSP90 family protein; Provisional | Back alignment and domain information |
|---|
Probab=88.92 E-value=0.46 Score=60.02 Aligned_cols=57 Identities=26% Similarity=0.352 Sum_probs=33.2
Q ss_pred EEEEEecCCCCCHHhHhhhcCCCcc----cC---CCCCCCCCCcccHHHHHHHHHHHcCCEEEEEEeC
Q 000920 831 LVTVEDTGVGIPLEAQVRIFTPFMQ----AD---SSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~rLFepF~q----~d---~stsr~~gGTGLGLsI~k~LVelmgG~I~v~S~~ 891 (1223)
.|+|+|||+||+.+...+.|-.... .. .......|.-|+|..=|-.+ +-++.|.|..
T Consensus 64 ~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~v----ad~v~V~Tr~ 127 (601)
T PRK14083 64 TLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFLV----ADEIVVVSRS 127 (601)
T ss_pred EEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEEe----cCEEEEEecc
Confidence 5899999999999998887632221 10 01112346778886543332 3345555544
|
|
| >PRK09483 response regulator; Provisional | Back alignment and domain information |
|---|
Probab=88.58 E-value=2.3 Score=45.50 Aligned_cols=113 Identities=17% Similarity=0.221 Sum_probs=72.9
Q ss_pred cEEEEecChhhhHHHHHHHHHhc-cceEE-EeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRL-EMAVH-VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~l-g~~v~-~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.+++++||++.....+...|+.. ++.+. .+.+..++...+.. .+++++++|....+.. +..+. +..+
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~-------~~~dlvi~d~~~~~~~-g~~~~---~~l~ 70 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT-------NAVDVVLMDMNMPGIG-GLEAT---RKIL 70 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh-------cCCCEEEEeCCCCCCC-HHHHH---HHHH
Confidence 37899999999999999999875 77764 67888888776643 2467888887664432 33222 2222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
... ...| ++++...............|...++.||.....+..++.
T Consensus 71 ~~~-----~~~~-ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~ 116 (217)
T PRK09483 71 RYT-----PDVK-IIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIR 116 (217)
T ss_pred HHC-----CCCe-EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 211 1334 344443334444445566788899999998777766553
|
|
| >PRK10710 DNA-binding transcriptional regulator BaeR; Provisional | Back alignment and domain information |
|---|
Probab=87.80 E-value=2.7 Score=45.56 Aligned_cols=110 Identities=21% Similarity=0.272 Sum_probs=74.3
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
+++++||++.....+...|+..|+.+..+.+..++...+.. ..++++++|....+.. +.... ...+..
T Consensus 12 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-------~~~dlvl~d~~~~~~~-g~~~~---~~l~~~- 79 (240)
T PRK10710 12 RILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ-------TPPDLILLDLMLPGTD-GLTLC---REIRRF- 79 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-------CCCCEEEEeCCCCCCC-HHHHH---HHHHhc-
Confidence 79999999999999999999999999999999888876643 2457788887654432 33222 222221
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
...|.+++. ..............|...++.||+....|...+
T Consensus 80 -----~~~pii~l~-~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i 121 (240)
T PRK10710 80 -----SDIPIVMVT-AKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 (240)
T ss_pred -----CCCCEEEEE-cCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHH
Confidence 134555443 333333344455678889999999877765544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.61 E-value=1.6 Score=49.59 Aligned_cols=109 Identities=18% Similarity=0.205 Sum_probs=72.1
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
++++|||+......+...|.+.|..+..+++..+|+..+... .++++++|-.+.. ..|+.+....+++.
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~-------kpDLifldI~mp~-~ngiefaeQvr~i~--- 70 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVF-------KPDLIFLDIVMPY-MNGIEFAEQVRDIE--- 70 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhc-------CCCEEEEEeecCC-ccHHHHHHHHHHhh---
Confidence 789999999999999999999998888999999999988654 4577788766543 23455544444332
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
...|-+++.+- .+. ..........+++.||+....|-.++
T Consensus 71 -----~~v~iifIssh--~ey-a~dsf~~n~~dYl~KPvt~ekLnraI 110 (361)
T COG3947 71 -----SAVPIIFISSH--AEY-ADDSFGMNLDDYLPKPVTPEKLNRAI 110 (361)
T ss_pred -----ccCcEEEEecc--hhh-hhhhcccchHhhccCCCCHHHHHHHH
Confidence 24565655431 110 01111112257999999877765544
|
|
| >PRK15479 transcriptional regulatory protein TctD; Provisional | Back alignment and domain information |
|---|
Probab=87.12 E-value=3.2 Score=44.24 Aligned_cols=112 Identities=25% Similarity=0.296 Sum_probs=72.6
Q ss_pred EEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcC
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKG 1008 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1223)
+++++||++.....+...+...|..+..+.+..++...+.. .+++++++|....... +.. .....+...
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-------~~~d~vild~~~~~~~-~~~---~~~~i~~~~ 70 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS-------EMYALAVLDINMPGMD-GLE---VLQRLRKRG 70 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh-------CCCCEEEEeCCCCCCc-HHH---HHHHHHhcC
Confidence 68999999998888888999999999888888888765532 2457788876554322 222 222222221
Q ss_pred CcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1009 GLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1009 ~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
...|.+++ ...............|...++.||+....+...+.
T Consensus 71 -----~~~~ii~l-t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~ 113 (221)
T PRK15479 71 -----QTLPVLLL-TARSAVADRVKGLNVGADDYLPKPFELEELDARLR 113 (221)
T ss_pred -----CCCCEEEE-ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHH
Confidence 13454444 33333333445566788899999998877765543
|
|
| >TIGR01387 cztR_silR_copR heavy metal response regulator | Back alignment and domain information |
|---|
Probab=86.93 E-value=2.6 Score=44.82 Aligned_cols=110 Identities=24% Similarity=0.299 Sum_probs=72.4
Q ss_pred EEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhcCC
Q 000920 930 ALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRKGG 1009 (1223)
Q Consensus 930 vLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1223)
++++||++.....+...++..|+.+..+.+..++...+.. ..++++++|....+.. +.. .+...+...
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-------~~~dlvl~d~~~~~~~-g~~---~~~~l~~~~- 68 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK-------DDYDLIILDVMLPGMD-GWQ---ILQTLRRSG- 68 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc-------CCCCEEEEeCCCCCCC-HHH---HHHHHHccC-
Confidence 4788999988888888899999999999999988776543 2467888887654422 222 223333211
Q ss_pred cccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1010 LEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1010 ~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
...|.++ +...............|...++.||+....+...+
T Consensus 69 ----~~~~iiv-ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i 110 (218)
T TIGR01387 69 ----KQTPVLF-LTARDSVADKVKGLDLGADDYLVKPFSFSELLARV 110 (218)
T ss_pred ----CCCcEEE-EEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHH
Confidence 1345444 44444444444555678889999999887766544
|
Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. |
| >PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional | Back alignment and domain information |
|---|
Probab=85.74 E-value=1.1 Score=57.60 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=16.4
Q ss_pred EEEEEecCCCCCHHhHhhhc
Q 000920 831 LVTVEDTGVGIPLEAQVRIF 850 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~rLF 850 (1223)
.++|.|||+||+++++.+-+
T Consensus 73 ~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 73 TLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred EEEEEECCCCCCHHHHHHHh
Confidence 57999999999988765554
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=85.70 E-value=2.9 Score=53.74 Aligned_cols=98 Identities=11% Similarity=0.010 Sum_probs=66.6
Q ss_pred EEEEEecCh-hH-----HHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhh
Q 000920 1083 QILVVDDNM-VN-----RRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEIN 1156 (1223)
Q Consensus 1083 rILVVDDn~-~n-----~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~ 1156 (1223)
+|+|||++. .+ .+.+...|++.|++|..+.+..+++.........++|+.|.+-. ..++++.||+..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---- 74 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEY---SLDLCSDINQLN---- 74 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcccceeEEEEecccc---hHHHHHHHHHhC----
Confidence 577787763 33 45567788999999999999999999887666788999995332 245777777642
Q ss_pred hhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEEC
Q 000920 1157 EQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSK 1205 (1223)
Q Consensus 1157 ~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~K 1205 (1223)
..+||+++.......+.-...-.-.++|+--
T Consensus 75 ------------------~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (713)
T PRK15399 75 ------------------EYLPLYAFINTHSTMDVSVQDMRMALWFFEY 105 (713)
T ss_pred ------------------CCCCEEEEcCccccccCChhHhhhcceeeee
Confidence 2689999887544333222222334556553
|
|
| >COG5381 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.45 E-value=1.8 Score=44.28 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhccCCCCeEEEEEEEccC
Q 000920 739 RQIITNLVGNSIKFTQDKGHIFVSVHLADD 768 (1223)
Q Consensus 739 ~QIL~NLLsNAIKfT~~~G~I~V~v~~~~~ 768 (1223)
--+..-|+.||+||. ..|.|.|..++...
T Consensus 65 gYl~NELiENAVKfr-a~geIvieasl~s~ 93 (184)
T COG5381 65 GYLANELIENAVKFR-ATGEIVIEASLYSH 93 (184)
T ss_pred HHHHHHHHHhhhccc-CCCcEEEEEEeccc
Confidence 345677999999999 57899998887543
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=85.19 E-value=2.9 Score=50.94 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=72.7
Q ss_pred EEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccch----hhhHHHHHHHHHHH
Q 000920 930 ALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDK----EIGLVLHYMLKQQR 1005 (1223)
Q Consensus 930 vLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~----~~~~~~~~~~~~~~ 1005 (1223)
+|+|||++.....+...+ .|+.+..+.+..+|...+... .++++++|..+.+. ..+..+. +..+
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~-------~~dlvllD~~mp~~~~~~~~g~~~l---~~i~ 68 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH-------EPAVVTLDLGLPPDADGASEGLAAL---QQIL 68 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC-------CCCEEEEeCCCCCCcCCCCCHHHHH---HHHH
Confidence 478999988888777777 688899999999998887532 45788888766531 2233322 2222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
... ...|.+++. ...+..........|...|+.||+....+...+..
T Consensus 69 ~~~-----~~~piI~lt-~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~ 115 (445)
T TIGR02915 69 AIA-----PDTKVIVIT-GNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDR 115 (445)
T ss_pred hhC-----CCCCEEEEe-cCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhh
Confidence 211 245655543 33334445556678888999999988777665543
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=84.89 E-value=3.9 Score=50.31 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=75.9
Q ss_pred ccCcEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHH
Q 000920 925 FRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQ 1004 (1223)
Q Consensus 925 ~~g~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~ 1004 (1223)
..+.+++++|+++.....+...++..|+.+..+.+..++...+... ..++++++|....+...+..+...+
T Consensus 413 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~------~~~d~vi~d~~~~~~~~~~~~~~~l--- 483 (540)
T PRK13557 413 GGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH------PEVDLLFTDLIMPGGMNGVMLAREA--- 483 (540)
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC------CCceEEEEeccCCCCCCHHHHHHHH---
Confidence 4567899999999999999999999999999999999888776421 2468888887765422233332222
Q ss_pred HhcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1005 RRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1005 ~~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
+... ...| ++++...............|...++.||+....+...+
T Consensus 484 ~~~~-----~~~~-ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l 529 (540)
T PRK13557 484 RRRQ-----PKIK-VLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRV 529 (540)
T ss_pred HHhC-----CCCc-EEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHH
Confidence 2211 1234 33333333333333344566778999999877766544
|
|
| >PRK11697 putative two-component response-regulatory protein YehT; Provisional | Back alignment and domain information |
|---|
Probab=84.51 E-value=3.8 Score=44.93 Aligned_cols=111 Identities=20% Similarity=0.200 Sum_probs=70.3
Q ss_pred cEEEEecChhhhHHHHHHHHHhccc-e-EEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEM-A-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~-~-v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
++++++||++.....+...++.++. . +..+.+..+++..+.. ..++++++|.++.+. .|..+... .+
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~-------~~~dlv~lDi~~~~~-~G~~~~~~---l~ 70 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR-------LKPDVVFLDIQMPRI-SGLELVGM---LD 70 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh-------cCCCEEEEeCCCCCC-CHHHHHHH---hc
Confidence 4789999999999999999998883 2 3457788888766542 246788898877642 34333222 11
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
. ...|.++.++.. .. ........|...++.||+....+..++..
T Consensus 71 ~-------~~~~~ii~vt~~-~~-~~~~a~~~~~~~yl~KP~~~~~l~~~l~~ 114 (238)
T PRK11697 71 P-------EHMPYIVFVTAF-DE-YAIKAFEEHAFDYLLKPIDPARLAKTLAR 114 (238)
T ss_pred c-------cCCCEEEEEecc-HH-HHHHHHhcCCcEEEECCCCHHHHHHHHHH
Confidence 1 123444444332 22 22333456777899999988777666543
|
|
| >COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=84.38 E-value=5.1 Score=44.05 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=79.0
Q ss_pred EEEEecChhhhHHHHHHHHHhcc-ce-EEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 929 RALVIDDKSIRAEVTRYHLQRLE-MA-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~lg-~~-v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
+++++||.+..+..+...|+..+ +. +..+.++.+++..... .+++++++|..+++ ..|......+++ .
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~-------~~pdvvl~Dl~mP~-~~G~e~~~~l~~--~ 71 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE-------LKPDVVLLDLSMPG-MDGLEALKQLRA--R 71 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh-------cCCCEEEEcCCCCC-CChHHHHHHHHH--H
Confidence 68999999999999999998776 55 4456668888876432 35688999987765 334444333331 1
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccCC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQE 1058 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~~ 1058 (1223)
.+ .. ++++++..............|...|+.|......+..+++.
T Consensus 72 ~p------~~-~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~ 116 (211)
T COG2197 72 GP------DI-KVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRA 116 (211)
T ss_pred CC------CC-cEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Confidence 11 12 45666666666677777889999999999888777766544
|
|
| >PRK10360 DNA-binding transcriptional activator UhpA; Provisional | Back alignment and domain information |
|---|
Probab=83.86 E-value=5.5 Score=41.75 Aligned_cols=109 Identities=21% Similarity=0.170 Sum_probs=69.0
Q ss_pred EEEEecChhhhHHHHHHHHHhc-cce-EEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 929 RALVIDDKSIRAEVTRYHLQRL-EMA-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 929 rvLvVDd~~~~~~v~~~~L~~l-g~~-v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
++++|||++.....+...+... +.. +..+.+..++...+.. .+++++++|....+.. +..+ ++..+
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~-------~~~dlvi~d~~~~~~~-g~~~---~~~l~- 70 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG-------RGVQVCICDISMPDIS-GLEL---LSQLP- 70 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc-------CCCCEEEEeCCCCCCC-HHHH---HHHHc-
Confidence 6899999998888888888653 554 4567888888776542 2467888887654432 2222 22221
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
...| +++++..............|...++.||+....+...+.
T Consensus 71 -------~~~~-vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~ 113 (196)
T PRK10360 71 -------KGMA-TIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVH 113 (196)
T ss_pred -------cCCC-EEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHH
Confidence 1234 344443333344445566788899999998877766554
|
|
| >PRK15426 putative diguanylate cyclase YedQ; Provisional | Back alignment and domain information |
|---|
Probab=83.46 E-value=1.3e+02 Score=37.67 Aligned_cols=63 Identities=11% Similarity=0.111 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000920 267 KILVVFVLLGIAISVWLFWLLKEKMHLRRKETLASMCDERARMLQDQFNVSMNHVHALAILVS 329 (1223)
Q Consensus 267 ~~l~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~d~~a~~lq~~~~~~~~~~~aL~~l~~ 329 (1223)
+++++.++..+++++++++.......+..++.+.+..+..+..+...++...+.+..++....
T Consensus 24 ~i~~~~~i~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (570)
T PRK15426 24 HVVNLCFIVVLLFSTLLTWREVVVLEDAYISSQRNHLENVANALDAQLQYNVDKLIFLRNGMR 86 (570)
T ss_pred eEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443434444455666667777777777777777788888888888888888777777766553
|
|
| >PTZ00130 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
Probab=83.35 E-value=1.8 Score=56.05 Aligned_cols=48 Identities=19% Similarity=0.428 Sum_probs=28.3
Q ss_pred EEEEEecCCCCCHHhHhhhcCC--------Ccc---cCCCCCCCCCCcccHHHHHHHHH
Q 000920 831 LVTVEDTGVGIPLEAQVRIFTP--------FMQ---ADSSTSRTYGGTGIGLSISRCLV 878 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~rLFep--------F~q---~d~stsr~~gGTGLGLsI~k~LV 878 (1223)
.++|+|||+||+.+++..-+-. |.+ .......-.|-.|+|.+=|-.+.
T Consensus 136 tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVA 194 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVA 194 (814)
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeec
Confidence 4789999999999875543311 211 10111234567899987654443
|
|
| >smart00433 TOP2c TopoisomeraseII | Back alignment and domain information |
|---|
Probab=82.85 E-value=1.3 Score=56.21 Aligned_cols=48 Identities=35% Similarity=0.569 Sum_probs=28.2
Q ss_pred EEEEEecCCCCCHHhHh--------hhcCCCccc---CCCCCC-CCCCcccHHHHHHHHH
Q 000920 831 LVTVEDTGVGIPLEAQV--------RIFTPFMQA---DSSTSR-TYGGTGIGLSISRCLV 878 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~--------rLFepF~q~---d~stsr-~~gGTGLGLsI~k~LV 878 (1223)
.|+|+|+|.|||.+..+ -+|...... +....+ ..|--|.||+.+..+-
T Consensus 34 ~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 34 SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 48999999999976433 233322111 111111 2234689999888874
|
Eukaryotic DNA topoisomerase II, GyrB, ParE |
| >COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.80 E-value=7.6 Score=38.65 Aligned_cols=110 Identities=20% Similarity=0.294 Sum_probs=79.9
Q ss_pred CCCcEEEEEecChhHHHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHH--HHHhhhhhhh
Q 000920 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATW--QIRHLENEIN 1156 (1223)
Q Consensus 1079 ~~~~rILVVDDn~~n~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr--~IR~~e~~~~ 1156 (1223)
+.||+.+.||-|.........+|...|.+|+.-..- ..+ +++.||+++..+-.+--.-...-+ -.|.+.
T Consensus 9 L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~----~~l-p~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~---- 79 (140)
T COG4999 9 LAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTF----SAL-PPAHYDMMLLGVAVTFRENLTMQHERLAKALS---- 79 (140)
T ss_pred hccceeEEecCccHHHHHHHHHHhcCCceEEecccc----ccc-ChhhhceeeecccccccCCchHHHHHHHHHHh----
Confidence 578999999999999999999999999999886543 233 346799999998877655544321 122211
Q ss_pred hhhhcCCcccccccCCCCCcccEEEEeccCCHHhHHHHHHcCCCEEEECCCCHHHHHHH
Q 000920 1157 EQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTA 1215 (1223)
Q Consensus 1157 ~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~ 1215 (1223)
..+--|+++-.. .....++..+-|+-+.|.||++...|...
T Consensus 80 -----------------mtd~vilalPs~-~qv~AeqLkQ~g~~~CllKPls~~rLlpt 120 (140)
T COG4999 80 -----------------MTDFVILALPSH-AQVNAEQLKQDGAGACLLKPLSSTRLLPT 120 (140)
T ss_pred -----------------hhcceEEecCcH-HHHhHHHHhhcchHhHhhCcchhhhhHHH
Confidence 112346665443 45567788899999999999999999873
|
|
| >TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein | Back alignment and domain information |
|---|
Probab=82.27 E-value=4.2 Score=47.46 Aligned_cols=84 Identities=12% Similarity=0.004 Sum_probs=57.2
Q ss_pred CCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhhhhhhcCCcccccccCCCCCcccEEEEec
Q 000920 1105 GAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA 1184 (1223)
Q Consensus 1105 G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~~~i~~g~~~~~~~~~~~~~~iPIIalTA 1184 (1223)
|.+++.+.+..++-.... .-.+|++|..| - ..-++..-+ .+..+++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~-----~--~~~~~~~~p---------------------~~~~vv~v~~ 49 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA---RAPLVLVDADM-----A--EACAAAGLP---------------------RRRRVVLVGG 49 (322)
T ss_pred CCceEEccCchhhhhccc---cCCeEEECchh-----h--hHHHhccCC---------------------CCCCEEEEeC
Confidence 566777777666544432 35789998754 1 122232111 1233554444
Q ss_pred -cCCHHhHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Q 000920 1185 -DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219 (1223)
Q Consensus 1185 -~~~~~~~~~~l~aG~ddyl~KP~~~~~L~~~v~r~ 1219 (1223)
..+.+....++++|+.||+.+|++..+|...+.+.
T Consensus 50 ~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 50 GEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADL 85 (322)
T ss_pred CCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhh
Confidence 55788999999999999999999999999999876
|
Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria. |
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=81.94 E-value=4.9 Score=51.76 Aligned_cols=81 Identities=10% Similarity=0.124 Sum_probs=57.8
Q ss_pred EEEEEecC-hhH-----HHHHHHHHhhCCCEEEEECCHHHHHHHhCCCCCccEEEEeCCCCCCCHHHHHHHHHhhhhhhh
Q 000920 1083 QILVVDDN-MVN-----RRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEIN 1156 (1223)
Q Consensus 1083 rILVVDDn-~~n-----~~vl~~~L~~~G~~V~~a~~G~eAl~~l~~~~~~DlIlmDi~MP~MDG~eatr~IR~~e~~~~ 1156 (1223)
+||+|+++ ..+ .+.+...|++.|++|..+.+..+++.........++|+.|.+- -..++++.||+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---- 74 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDK---YNLELCEEISKMN---- 74 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcccceeEEEEecch---hhHHHHHHHHHhC----
Confidence 46666665 222 5567778899999999999999999988766678899998422 1234677777532
Q ss_pred hhhhcCCcccccccCCCCCcccEEEEeccCCH
Q 000920 1157 EQIASGESSAEMFGNVGLWHVPILAMTADVIQ 1188 (1223)
Q Consensus 1157 ~~i~~g~~~~~~~~~~~~~~iPIIalTA~~~~ 1188 (1223)
..+||+++......
T Consensus 75 ------------------~~~Pv~~~~~~~~~ 88 (714)
T PRK15400 75 ------------------ENLPLYAFANTYST 88 (714)
T ss_pred ------------------CCCCEEEEcccccc
Confidence 26899998775433
|
|
| >PRK09935 transcriptional regulator FimZ; Provisional | Back alignment and domain information |
|---|
Probab=81.81 E-value=8.6 Score=40.55 Aligned_cols=113 Identities=15% Similarity=0.240 Sum_probs=70.3
Q ss_pred cEEEEecChhhhHHHHHHHHHhc-cceEE-EeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRL-EMAVH-VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~l-g~~v~-~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.+++++||++.........+... ++.+. .+.+..++...+.. ..++++++|....+.. +..+. ...+
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~dlvild~~l~~~~-g~~~~---~~l~ 72 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT-------RPVDLIIMDIDLPGTD-GFTFL---KRIK 72 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh-------cCCCEEEEeCCCCCCC-HHHHH---HHHH
Confidence 57999999999988888888876 46654 56777777765532 3467888887654432 33322 2222
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
... ...|.++ +...............|...++.||+....+...+.
T Consensus 73 ~~~-----~~~~ii~-ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 118 (210)
T PRK09935 73 QIQ-----STVKVLF-LSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQ 118 (210)
T ss_pred HhC-----CCCcEEE-EECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 211 1344443 333333334445556788899999998777766543
|
|
| >COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=81.67 E-value=1.5 Score=55.96 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.0
Q ss_pred EEEEEecCCCCCHHhHhhhcCCCcccC
Q 000920 831 LVTVEDTGVGIPLEAQVRIFTPFMQAD 857 (1223)
Q Consensus 831 ~IsV~DTGiGI~~e~~~rLFepF~q~d 857 (1223)
.|.|.|+|+||++++++-.+.++.+.+
T Consensus 54 ~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 54 LIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 489999999999999999999987543
|
|
| >PRK09390 fixJ response regulator FixJ; Provisional | Back alignment and domain information |
|---|
Probab=81.55 E-value=5.6 Score=41.29 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=71.2
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHhc
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRRK 1007 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~~ 1007 (1223)
.+++++||++.....+...+...|+.+..+.+...+...+.. ..++++++|...... .+.... ...+..
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-------~~~d~ii~d~~~~~~-~~~~~~---~~l~~~ 72 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG-------LRFGCVVTDVRMPGI-DGIELL---RRLKAR 72 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc-------CCCCEEEEeCCCCCC-cHHHHH---HHHHhc
Confidence 578999999999999999999999999988888877766532 245778887654332 233222 222221
Q ss_pred CCcccccCCCeEEEEeccCCccchhhhhcCCceeeeccccccccccccc
Q 000920 1008 GGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCF 1056 (1223)
Q Consensus 1008 ~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l 1056 (1223)
. ...|.+++. ..............|...++.||+....+...+
T Consensus 73 ~-----~~~~ii~l~-~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l 115 (202)
T PRK09390 73 G-----SPLPVIVMT-GHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAI 115 (202)
T ss_pred C-----CCCCEEEEE-CCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHH
Confidence 1 134554443 333333334445667778999998776665443
|
|
| >PRK10610 chemotaxis regulatory protein CheY; Provisional | Back alignment and domain information |
|---|
Probab=81.50 E-value=8.6 Score=35.94 Aligned_cols=114 Identities=25% Similarity=0.289 Sum_probs=68.1
Q ss_pred CcEEEEecChhhhHHHHHHHHHhccce-EEEeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHH
Q 000920 927 GLRALVIDDKSIRAEVTRYHLQRLEMA-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQR 1005 (1223)
Q Consensus 927 g~rvLvVDd~~~~~~v~~~~L~~lg~~-v~~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~ 1005 (1223)
.++++++|+++.....+...++..|.. +..+.+...+...... ..++++++|...... .+... .+..+
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~di~l~d~~~~~~-~~~~~---~~~l~ 73 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA-------GGFGFVISDWNMPNM-DGLEL---LKTIR 73 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc-------cCCCEEEEcCCCCCC-CHHHH---HHHHH
Confidence 468999999999999999999999984 6677787777665432 245677777554322 12222 22232
Q ss_pred hcCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccc
Q 000920 1006 RKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGC 1055 (1223)
Q Consensus 1006 ~~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~ 1055 (1223)
..... ...|.+++ ...............|...++.||+....+...
T Consensus 74 ~~~~~---~~~~~i~~-~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~ 119 (129)
T PRK10610 74 ADGAM---SALPVLMV-TAEAKKENIIAAAQAGASGYVVKPFTAATLEEK 119 (129)
T ss_pred hCCCc---CCCcEEEE-ECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHH
Confidence 22110 13454443 333333333444567778899999876655443
|
|
| >PRK09191 two-component response regulator; Provisional | Back alignment and domain information |
|---|
Probab=80.69 E-value=7.9 Score=43.01 Aligned_cols=111 Identities=21% Similarity=0.239 Sum_probs=69.9
Q ss_pred cEEEEecChhhhHHHHHHHHHhccceEE-EeccHHHHhhhhcccCCCCCCCcceEEEecccccchhhhHHHHHHHHHHHh
Q 000920 928 LRALVIDDKSIRAEVTRYHLQRLEMAVH-VANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKEIGLVLHYMLKQQRR 1006 (1223)
Q Consensus 928 ~rvLvVDd~~~~~~v~~~~L~~lg~~v~-~a~s~~~A~~~l~~~~~~~~~~~~~lvliD~~~~~~~~~~~~~~~~~~~~~ 1006 (1223)
.+++++||++.....+...|+..|+.+. .+.+..++...+.. ..++++++|....+...+... ++..+.
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~-------~~~dlvi~d~~~~~~~~g~e~---l~~l~~ 207 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK-------TRPGLILADIQLADGSSGIDA---VNDILK 207 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc-------cCCCEEEEecCCCCCCCHHHH---HHHHHH
Confidence 4689999999999999999999999877 67788888777543 246888888876532223322 222222
Q ss_pred cCCcccccCCCeEEEEeccCCccchhhhhcCCceeeecccccccccccccC
Q 000920 1007 KGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVLIGCFQ 1057 (1223)
Q Consensus 1007 ~~~~~~~~~~p~i~ll~~s~~~~~~~~~~~~g~~~~l~KPl~~s~L~~~l~ 1057 (1223)
.. ..|.+++.... .. .......+...++.||+....+...+.
T Consensus 208 ~~------~~pii~ls~~~-~~--~~~~~~~~~~~~l~kP~~~~~l~~~i~ 249 (261)
T PRK09191 208 TF------DVPVIFITAFP-ER--LLTGERPEPAFLITKPFQPDTVKAAIS 249 (261)
T ss_pred hC------CCCEEEEeCCC-cH--HHHHHhcccCceEECCCCHHHHHHHHH
Confidence 11 34555543322 11 111222344568999998888776654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1223 | ||||
| 3t4j_A | 270 | Arabidopsis Histidine Kinase 4 Sensor Domain In Com | 2e-98 | ||
| 3mm4_A | 206 | Crystal Structure Of The Receiver Domain Of The His | 4e-15 | ||
| 4euk_A | 153 | Crystal Structure Length = 153 | 4e-12 | ||
| 2r25_B | 133 | Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef | 3e-10 | ||
| 1oxb_B | 134 | Complex Between Ypd1 And Sln1 Response Regulator Do | 4e-10 | ||
| 4ew8_A | 268 | Crystal Structure Of A C-Terminal Part Of Tyrosine | 9e-10 | ||
| 2c2a_A | 258 | Structure Of The Entire Cytoplasmic Portion Of A Se | 3e-09 | ||
| 3dge_A | 258 | Structure Of A Histidine Kinase-response Regulator | 3e-09 | ||
| 3c97_A | 140 | Crystal Structure Of The Response Regulator Receive | 8e-09 | ||
| 3m6m_D | 143 | Crystal Structure Of Rpff Complexed With Rec Domain | 2e-08 | ||
| 3a0r_A | 349 | Crystal Structure Of Histidine Kinase Thka (Tm1359) | 2e-08 | ||
| 2ayx_A | 254 | Solution Structure Of The E.Coli Rcsc C-Terminus (R | 2e-08 | ||
| 2ayz_A | 133 | Solution Structure Of The E.Coli Rcsc C-Terminus (R | 3e-08 | ||
| 3sl2_A | 177 | Atp Forms A Stable Complex With The Essential Histi | 1e-06 | ||
| 3dge_C | 122 | Structure Of A Histidine Kinase-response Regulator | 5e-06 | ||
| 1m5t_A | 124 | Crystal Structure Of The Response Regulator Divk Le | 1e-05 | ||
| 3d36_A | 244 | How To Switch Off A Histidine Kinase: Crystal Struc | 2e-05 | ||
| 3gl9_A | 122 | The Structure Of A Histidine Kinase-Response Regula | 3e-05 | ||
| 1nxo_A | 120 | Micarec Ph7.0 Length = 120 | 3e-05 | ||
| 3f6p_A | 120 | Crystal Structure Of Unphosphorelated Receiver Doma | 4e-05 | ||
| 2zwm_A | 130 | Crystal Structure Of Yycf Receiver Domain From Baci | 4e-05 | ||
| 1r62_A | 160 | Crystal Structure Of The C-terminal Domain Of The T | 6e-05 | ||
| 1dcf_A | 136 | Crystal Structure Of The Receiver Domain Of The Eth | 2e-04 | ||
| 1nxt_A | 120 | Micarec Ph 4.0 Length = 120 | 2e-04 | ||
| 1yio_A | 208 | Crystallographic Structure Of Response Regulator St | 5e-04 | ||
| 3lte_A | 132 | Crystal Structure Of Response Regulator (Signal Rec | 6e-04 | ||
| 3h1g_A | 129 | Crystal Structure Of Chey Mutant T84a Of Helicobact | 7e-04 |
| >pdb|3T4J|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex With N- Isopentenyl Adenine Length = 270 | Back alignment and structure |
|
| >pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine Kinase Cki1 From Arabidopsis Thaliana Length = 206 | Back alignment and structure |
|
| >pdb|4EUK|A Chain A, Crystal Structure Length = 153 | Back alignment and structure |
|
| >pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3- Length = 133 | Back alignment and structure |
|
| >pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In Space Group P2(1)2(1)2(1) Length = 134 | Back alignment and structure |
|
| >pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase (Divl) From Caulobacter Crescentus Cb15 At 2.50 A Resolution Length = 268 | Back alignment and structure |
|
| >pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor Histidine Kinase Protein Length = 258 | Back alignment and structure |
|
| >pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex Reveals Insights Into Two-component Signaling And A Novel Cis- Autophosphorylation Mechanism Length = 258 | Back alignment and structure |
|
| >pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver Domain Of A Signal Transduction Histidine Kinase From Aspergillus Oryzae Length = 140 | Back alignment and structure |
|
| >pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc Length = 143 | Back alignment and structure |
|
| >pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In Complex With Response Regulator Protein Trra (Tm1360) Length = 349 | Back alignment and structure |
|
| >pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues 700-949) Containing Linker Region And Phosphoreceiver Domain Length = 254 | Back alignment and structure |
|
| >pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues 817-949) Containing Phosphoreceiver Domain Length = 133 | Back alignment and structure |
|
| >pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine Kinase Walk (yycg) Domain Length = 177 | Back alignment and structure |
|
| >pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex Reveals Insights Into Two-component Signaling And A Novel Cis- Autophosphorylation Mechanism Length = 122 | Back alignment and structure |
|
| >pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk Length = 124 | Back alignment and structure |
|
| >pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of Geobacillus Stearothermophilus Kinb With The Inhibitor Sda Length = 244 | Back alignment and structure |
|
| >pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator Complex Sheds Light Into Two-Component Signaling And Reveals A Novel Cis Autophosphorylation Mechanism Length = 122 | Back alignment and structure |
|
| >pdb|1NXO|A Chain A, Micarec Ph7.0 Length = 120 | Back alignment and structure |
|
| >pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of Yycf Length = 120 | Back alignment and structure |
|
| >pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus Subtilis Length = 130 | Back alignment and structure |
|
| >pdb|1R62|A Chain A, Crystal Structure Of The C-terminal Domain Of The Two-component System Transmitter Protein Nrii (ntrb) Length = 160 | Back alignment and structure |
|
| >pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene Receptor Of Arabidopsis Thaliana Length = 136 | Back alignment and structure |
|
| >pdb|1NXT|A Chain A, Micarec Ph 4.0 Length = 120 | Back alignment and structure |
|
| >pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From Pseudomonas Fluorescens Length = 208 | Back alignment and structure |
|
| >pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver Domain) From Bermanella Marisrubri Length = 132 | Back alignment and structure |
|
| >pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter Pylori Length = 129 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3t4l_A Histidine kinase 4; PAS domain, hormone receptor, endop reticulum; HET: ZEA; 1.53A {Arabidopsis thaliana} PDB: 3t4k_A* 3t4j_A* 3t4o_A* 3t4q_A* 3t4s_A* 3t4t_A* Length = 270 | Back alignment and structure |
|---|
Score = 280 bits (718), Expect = 2e-86
Identities = 176/276 (63%), Positives = 214/276 (77%), Gaps = 15/276 (5%)
Query: 293 LRRKETLASMCDERARMLQDQFNVSMNHVHALAILVSTFHHRKHPSAVDQKTFGEYTERT 352
+RR+E L SMCD+RARMLQDQF+VS+NHVHALAILVSTFH+ K+PSA+DQ+TF EYT RT
Sbjct: 7 IRREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTART 66
Query: 353 AFERPLTSGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEY 412
AFERPL SGVAYA KV++ ERE FE+QH W IK T + +P+PV+DEY
Sbjct: 67 AFERPLLSGVAYAEKVVNFEREMFERQHNWVIK-------------TMDRGEPSPVRDEY 113
Query: 413 APVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTPPFKLLKSNHLGVVLTFAVY 472
APVIFSQ++VS++ S+DMMSG+EDRENILRAR +GK VLT PF+LL+++HLGVVLTF VY
Sbjct: 114 APVIFSQDSVSYLESLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVY 173
Query: 473 NTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPINM 532
+ LP++ T E+RI AT GYLG ++DV SLVE LL QLA Q IVV+VYD TNAS P+ M
Sbjct: 174 KSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVM 233
Query: 533 YG--PDVTDTGLLRVSNLDFGDPSRKHEMHCRFKQK 566
YG + D L S LDFGDP RKH+M CR+ QK
Sbjct: 234 YGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQK 269
|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Length = 268 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 3e-62
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 3/172 (1%)
Query: 607 EMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT-ELDAAQLDYAQTAHN 665
+ + A A+ K F+ VS+E+RTP+ ++G ++L + ++
Sbjct: 25 ALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRA 84
Query: 666 SGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSD 725
+ L I+DVLD A+I++G + E + D+L N A G+ LA+ +
Sbjct: 85 AATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEE 144
Query: 726 RVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
V + GD R Q + +LV N+++ T G + +S A ++DV D
Sbjct: 145 DVGLIR-GDGKRLAQTLDHLVENALRQTPPGGRVTLSARRALG-EVRLDVSD 194
|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Length = 268 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889
+ + V DTG G+P Q IF F R GG G+GL++ + LVEL GG + S
Sbjct: 188 VRLDVSDTGRGVPFHVQAHIFDRF------VGRDRGGPGLGLALVKALVELHGGWVALES 241
Query: 890 EPGTGSTFSFT 900
EPG GSTF+
Sbjct: 242 EPGNGSTFTCH 252
|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 2e-50
Identities = 37/169 (21%), Positives = 83/169 (49%), Gaps = 5/169 (2%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELD---AAQLDYAQTAHNSGKDL 670
R + D K++F+A +SHE+RTP+ + + + ++ + + ++ + + L
Sbjct: 12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHL 71
Query: 671 ISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEV 730
+L+N++LD +++E L+ L D++++ ++ A+ + + + P
Sbjct: 72 ENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVE 131
Query: 731 VIGDPGRFRQIITNLVGNSIKFTQDKG-HIFVSVHL-ADDVRSKVDVKD 777
DP R RQ++ NL+ N +K+++ +V V L D + V+D
Sbjct: 132 AYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVED 180
|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 34/82 (41%), Positives = 48/82 (58%)
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
+L+ VED G+GIP A+ RIF F + DSS + GTG+GL+I++ +VEL GG I
Sbjct: 173 GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVE 232
Query: 889 SEPGTGSTFSFTVTFTEGERNS 910
SE G GS F + ++
Sbjct: 233 SEVGKGSRFFVWIPKDRAGEDN 254
|
| >1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 5e-45
Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 19/142 (13%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
G ++LV+D+N V+R V +G L G VT V + ++ H FMD+ MP
Sbjct: 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS--HEHKVVFMDVCMPG 62
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
++ +Q +I E F ++A++ + +++ E+CM G
Sbjct: 63 VENYQIALRIH-----------------EKFTKQRHQRPLLVALSGNTDKSTKEKCMSFG 105
Query: 1199 MDDYVSKPFEDEQLYTAVARFF 1220
+D + KP + + ++
Sbjct: 106 LDGVLLKPVSLDNIRDVLSDLL 127
|
| >3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} Length = 143 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 3e-44
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 19/141 (13%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
++ ++LV DD+ NR V + L+K G V CV+ +D + ++DA +DL MP
Sbjct: 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE-EDYDAVIVDLHMPG 70
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
M+G Q+R ++ G+ + P++ ++ADV + C + G
Sbjct: 71 MNGLDMLKQLRVMQAS------------------GMRYTPVVVLSADVTPEAIRACEQAG 112
Query: 1199 MDDYVSKPFEDEQLYTAVARF 1219
+++KP +L +A
Sbjct: 113 ARAFLAKPVVAAKLLDTLADL 133
|
| >3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A Length = 206 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 4e-41
Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 34/174 (19%)
Query: 1060 PESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAV 1118
P + + +Q+ KPS L+GK++LVVDDN ++R+VA G LKK G + V D G+ A+
Sbjct: 40 PIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEAL 99
Query: 1119 DKLT------------PPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSA 1166
+T FD FMD QMPEMDG++AT +IR +E
Sbjct: 100 RLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYG---------- 149
Query: 1167 EMFGNVGLWHVPILAMTADVIQASNEQ-CMKCGMDDYVSKPFEDEQLYTAVARF 1219
PI+A++ + + ++ GMD ++ K QL +
Sbjct: 150 --------VRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSL--NQLANVIREI 193
|
| >3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A Length = 206 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 18/130 (13%)
Query: 870 GLSISRC--LVELMGGEIGF-----VSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDV 922
G S L+ SE S + E K D
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSK----PSDD 56
Query: 923 SEFRGLRALVIDDKSIRAEVTRYHLQRLEMA-VHVANSMQLACSYLSDTCSTSVLPQLA- 980
RG R LV+DD I +V L+++ ++ V +S + A +++ +
Sbjct: 57 EFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVD 116
Query: 981 -----LVLID 985
+ +D
Sbjct: 117 KLPFDYIFMD 126
|
| >2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Length = 254 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 2e-40
Identities = 56/302 (18%), Positives = 100/302 (33%), Gaps = 67/302 (22%)
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
V G R + + + LQR + V + P+ +
Sbjct: 6 VEGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQEP-------------TPE-DV 51
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGG---LEISRNLPKIFLLATSISETDRDELKSDG 1038
++ D+ V ++ G + R I L E
Sbjct: 52 LITDEVV---------------SKKWQGRAVVTFCRRHIGIPL-----------EKAPGE 85
Query: 1039 IVTLLTKPLRLSVLIGCFQ-EDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVA 1097
V + P L L+ + ES ILVVDD+ +NRR+
Sbjct: 86 WVHSVAAPHELPALLARIYLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLL 145
Query: 1098 EGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINE 1157
L G + G A++ L+ ++ D D+ MP MDG++ T +IR L
Sbjct: 146 ADQLGSLGYQCKTANDGVDALNVLSK-NHIDIVLSDVNMPNMDGYRLTQRIRQLGL---- 200
Query: 1158 QIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVA 1217
+P++ +TA+ + ++C++ GMD +SKP + + +
Sbjct: 201 ------------------TLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLT 242
Query: 1218 RF 1219
+
Sbjct: 243 LY 244
|
| >2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Length = 254 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 7e-26
Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 5/134 (3%)
Query: 830 LLVTVEDTGVGIP-LEAQVRIFTPFMQADSSTSRTYGGTGIGLSISR----CLVELMGGE 884
L +++ +G+ + E Q + D S+ + G + R L + G
Sbjct: 27 LETSLQRSGIVVTTYEGQEPTPEDVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGEW 86
Query: 885 IGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTR 944
+ V+ P + E E + VS+ + LV+DD I +
Sbjct: 87 VHSVAAPHELPALLARIYLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLA 146
Query: 945 YHLQRLEMAVHVAN 958
L L AN
Sbjct: 147 DQLGSLGYQCKTAN 160
|
| >2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B Length = 133 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 3e-40
Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 26/144 (18%)
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKL----TPPHNFDACFMDLQ 1135
+ILVV+DN VN+ V + L G + G+ A DK+ + N++ FMD+Q
Sbjct: 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQ 61
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP++DG +T IR + PI+A+TA ++ ++C+
Sbjct: 62 MPKVDGLLSTKMIRRDLG---------------------YTSPIVALTAFADDSNIKECL 100
Query: 1196 KCGMDDYVSKPFEDEQLYTAVARF 1219
+ GM+ ++SKP + +L T + F
Sbjct: 101 ESGMNGFLSKPIKRPKLKTILTEF 124
|
| >3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Length = 259 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 1e-39
Identities = 48/297 (16%), Positives = 99/297 (33%), Gaps = 68/297 (22%)
Query: 929 RALVIDD-KSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKD 987
+ L+++D +IR + + Q+ + + ++++ D
Sbjct: 6 KILIVEDSMTIRRMLIQAIAQQTGLEIDAFDTLE------------------GARHCQGD 47
Query: 988 VWDKEIGLVL--HYMLKQQRRKGGLEISRNL----PKIFLLATSISETDRDELKSDGIVT 1041
+ + L + E + L + +L ISE R+ G++
Sbjct: 48 EYV----VALVDLTLPDAP----SGEAVKVLLERGLPVVILTADISEDKREAWLEAGVLD 99
Query: 1042 LLTKPLRLSVLIGCFQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGAL 1101
+ K R S+ +L + ++LVVDD+ +R L
Sbjct: 100 YVMKDSRHSLQ-----YAVGLVHRLYLNQ----------QIEVLVVDDSRTSRHRTMAQL 144
Query: 1102 KKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIAS 1161
+K V R A+ L +D MPE+DG +R
Sbjct: 145 RKQLLQVHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERY--------- 195
Query: 1162 GESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+ I+ ++ + + + +K G +D++++PFE E+L V+
Sbjct: 196 -----------SKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSH 241
|
| >3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* Length = 259 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 1e-16
Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 25/138 (18%)
Query: 1078 LLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
+ ++IL+V+D+M RR+ A+ + + + +DL +P
Sbjct: 1 MSLKQKILIVEDSMTIRRMLIQAIAQQTGLEIDAFDTLEGARHCQG-DEYVVALVDLTLP 59
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
+ +A + +P++ +TAD+ + E ++
Sbjct: 60 DAPSGEAVKVLLER------------------------GLPVVILTADISEDKREAWLEA 95
Query: 1198 GMDDYVSKPFEDEQLYTA 1215
G+ DYV K Y
Sbjct: 96 GVLDYVMKDSRHSLQYAV 113
|
| >1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A Length = 124 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 3e-39
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 21/138 (15%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K++L+V+DN +N ++ L+ G G +A+ + D MD+Q+PE+ G
Sbjct: 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE-NKPDLILMDIQLPEISG 60
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ T ++ + L H+P++A+TA ++ E+ + G +
Sbjct: 61 LEVTKWLKEDD--------------------DLAHIPVVAVTAFAMKGDEERIREGGCEA 100
Query: 1202 YVSKPFEDEQLYTAVARF 1219
Y+SKP + R
Sbjct: 101 YISKPISVVHFLETIKRL 118
|
| >3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} Length = 140 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 7e-39
Identities = 43/141 (30%), Positives = 60/141 (42%), Gaps = 21/141 (14%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
+ +L+ +DN + R VA AL+K +T V G A+ FD MD+QMP
Sbjct: 8 IMPLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN-RQFDVIIMDIQMPV 66
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
MDG +A +IR+ E N + I+A+TAD I
Sbjct: 67 MDGLEAVSEIRNYERTHNTK-----------------RASIIAITADTIDDDRP---GAE 106
Query: 1199 MDDYVSKPFEDEQLYTAVARF 1219
+D+YVSKP QL V
Sbjct: 107 LDEYVSKPLNPNQLRDVVLTC 127
|
| >3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} Length = 144 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 3e-38
Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 28/147 (19%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHG--AIVTCVDCGRAAVDKLTPPHNFDACFMDLQM 1136
L+ K++LVV+DN + + L + + VD G A+ ++ +D +D+ +
Sbjct: 3 LRSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ-AKYDLIILDIGL 61
Query: 1137 PEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
P +GF+ +R H PI+ +T +V +QCM
Sbjct: 62 PIANGFEVMSAVRKPG--------------------ANQHTPIVILTDNVSDDRAKQCMA 101
Query: 1197 CGMDDYVSKPFE-----DEQLYTAVAR 1218
G V K ++Y +
Sbjct: 102 AGASSVVDKSSNNVTDFYGRIYAIFSY 128
|
| >3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} Length = 127 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 2e-34
Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 22/140 (15%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
+ +Q L+V+D + L+ G V G A+ ++ +DA F+DL +P+
Sbjct: 1 MSLQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMS-TRGYDAVFIDLNLPD 59
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
G Q+R L E +A++ + +
Sbjct: 60 TSGLALVKQLRALPMEK--------------------TSKFVAVSGFA-KNDLGKEACEL 98
Query: 1199 MDDYVSKPFEDEQLYTAVAR 1218
D Y+ KP + L +
Sbjct: 99 FDFYLEKPIDIASLEPILQS 118
|
| >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Length = 388 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 1e-33
Identities = 42/341 (12%), Positives = 82/341 (24%), Gaps = 79/341 (23%)
Query: 598 IAQVENDYHEMME-LKARAEAADVAKSQFLATVSHEIRTPMNGVL-----GMLQMLMDTE 651
I V Y + L D A + ++ V+ G+ + E
Sbjct: 92 ILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIE 151
Query: 652 LDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVLSLFSSK 711
+ + S + L L + + + +++ +
Sbjct: 152 DEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSPKKIIEKWVDFARRL 211
Query: 712 ANQK-GIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVR 770
K G + ++ V P I+ L+ N+++ T + H+ ++
Sbjct: 212 CEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATM-ESHLDTPYNV----- 265
Query: 771 SKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKL 830
V + + ++ D
Sbjct: 266 PDVVIT---------------------------IANNDVDLIIRISD------------- 285
Query: 831 LVTVEDTGVGIPLEAQVRIFTPF--------------------MQADSSTSRTYGGTGIG 870
G GI + R+ S G G G
Sbjct: 286 ------RGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFG 339
Query: 871 LSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSL 911
L SR E +GG + S G G+ + +G S
Sbjct: 340 LPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGREESF 380
|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Length = 394 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 3e-31
Identities = 42/337 (12%), Positives = 93/337 (27%), Gaps = 80/337 (23%)
Query: 586 LVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ 645
+ I + + + + E + ++ FL R + ++
Sbjct: 102 ALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLS-RISIRMLINQHT 160
Query: 646 MLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDNVL 705
++ D + A + + + ++ ++ D D AK+ +
Sbjct: 161 LIFDGSTNPAHPKHIGS-IDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLE--------- 210
Query: 706 SLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHL 765
I+ + + P ++ P ++ L N+++ T +
Sbjct: 211 -----------IQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVE---------- 249
Query: 766 ADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQL 825
H+S + P+ E
Sbjct: 250 ----------------------SHESSLIL-----PPIKVMVALGEED------------ 270
Query: 826 GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYG-----GTGIGLSISRCLVEL 880
L + + D G G+PL R+F+ + G G G GL ISR +
Sbjct: 271 ----LSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKY 326
Query: 881 MGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQ 917
G++ S G G+ + + P + +
Sbjct: 327 FQGDLQLFSMEGFGTDAVIYLKALSTDSVERLPVYNK 363
|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Length = 244 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 55/278 (19%), Positives = 100/278 (35%), Gaps = 75/278 (26%)
Query: 627 ATVSHEIRTPMNGVLGMLQML-MDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIES 685
A++SHEIR P+ G +Q++ + YA+ A ++I D L AK
Sbjct: 19 ASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAK--- 75
Query: 686 GRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNL 745
++ ++ V+ + AN +++ + P VIG+ +FRQ + N+
Sbjct: 76 -PAPETPEKLNVKLEIERVIDILRPLANMSCVDI---QATLAPFSVIGEREKFRQCLLNV 131
Query: 746 VGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVD 805
+ N+I+ + G + V V + + R + + D T G
Sbjct: 132 MKNAIEAMPNGGTLQVYVSIDNG-RVLIRIAD-------------------TGVGMT--- 168
Query: 806 RWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYG 865
EQL R+ P+ T++
Sbjct: 169 ----------------KEQLERL---------------------GEPYF-----TTKGVK 186
Query: 866 GTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTF 903
GTG+G+ + ++E M G I SE G+T ++
Sbjct: 187 GTGLGMMVVYRIIESMNGTIRIESEIHKGTT--VSIYL 222
|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-27
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 6/155 (3%)
Query: 624 QFLATVSHEIRTPMNGVLGMLQMLM-DTELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
+ A V+HEIR P+ + G + + + Y N L +++ ++L+ +K
Sbjct: 134 EMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSK 193
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
EF F+L++++ V LF K + I+ + V D R +Q++
Sbjct: 194 ERQ---VLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVE-ADRTRIKQVL 249
Query: 743 TNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
NLV N+I+ T + G I ++ + +V V +
Sbjct: 250 INLVQNAIEATGENGKIKITSEDMYT-KVRVSVWN 283
|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 1e-12
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 822 MEQLGRIKL---------LVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLS 872
+ G+IK+ V+V ++G IP E + +IF+PF + GTG+GLS
Sbjct: 260 TGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFF------TTKTQGTGLGLS 313
Query: 873 ISRCLVELM-GGEIGFVSEPGTGSTFSFT 900
I R ++E GG+I + G F F
Sbjct: 314 ICRKIIEDEHGGKI-WTENRENGVVFIFE 341
|
| >3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii} Length = 146 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 3e-26
Identities = 21/146 (14%), Positives = 50/146 (34%), Gaps = 25/146 (17%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAI--VTCVDCGRAAVDKL----TPPHNFDACFMD 1133
K +L++DD+ + + ++ + + V G AA++KL +D
Sbjct: 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICID 67
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
+ MP ++G++ + + + + +++ + +
Sbjct: 68 INMPGINGWELIDLFKQHFQPMKNKS------------------IVCLLSSSLDPRDQAK 109
Query: 1194 CMKC-GMDDYVSKPFEDEQLYTAVAR 1218
+D YVSKP L +
Sbjct: 110 AEASDWVDYYVSKPLTANALNNLYNK 135
|
| >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Length = 407 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 4e-26
Identities = 49/323 (15%), Positives = 90/323 (27%), Gaps = 83/323 (25%)
Query: 586 LVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQ 645
V I + + I + E E FL + R + +L
Sbjct: 112 TVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRF-YMSRISIRMLLNQHS 170
Query: 646 MLMDTELDA--AQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVPFHLHDVLDN 703
+L + + + + N +++ +I D + A+
Sbjct: 171 LLFGGKGKGSPSHRKHIGS-INPNCNVLEVIKDGYENAR--------------------R 209
Query: 704 VLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSV 763
+ L+ + + +E S P V+ P ++ L N+++ T +
Sbjct: 210 LCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEH------- 262
Query: 764 HLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTME 823
H V + V
Sbjct: 263 HANRGVYPPIQVH----------------------------------------------V 276
Query: 824 QLGRIKLLVTVEDTGVGIPLEAQVRIFTPF------MQADSSTSRTYGGTGIGLSISRCL 877
LG L V + D G G+PL R+F + ++S + G G GL ISR
Sbjct: 277 TLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLY 336
Query: 878 VELMGGEIGFVSEPGTGSTFSFT 900
+ G++ S G G+
Sbjct: 337 AQYFQGDLKLYSLEGYGTDAVIY 359
|
| >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Length = 419 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 43/357 (12%), Positives = 89/357 (24%), Gaps = 80/357 (22%)
Query: 563 FKQKPPVPWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAK 622
F + + + ++ + + + + + E E
Sbjct: 101 FLELLEYENKSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNI 160
Query: 623 SQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAK 682
FL R ++ +L + + + + + ++ ++ D + AK
Sbjct: 161 QYFLDRFYTN-RISFRMLINQHTLLFGGDTNPVHPKHIGS-IDPTCNVADVVKDAYETAK 218
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
+ + A + +E + P V+ P ++
Sbjct: 219 --------------------MLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHML 258
Query: 743 TNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFP 802
L NS++ T + + V
Sbjct: 259 FELFKNSMRATVELYED------RKEGYPAVKTL-------------------------- 286
Query: 803 VVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQA------ 856
V K + K+ D G G+PL R+F
Sbjct: 287 -VTLGKEDLSIKISD-------------------LGGGVPLRKIDRLFNYMYSTAPRPSL 326
Query: 857 DSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDP 913
+ + + G G GL ISR G++ S G G+ + E P
Sbjct: 327 EPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALSSESFERLP 383
|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Length = 177 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-25
Identities = 30/85 (35%), Positives = 53/85 (62%)
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
L ++V+D G+GIP + ++F F + D + +R GGTG+GL+I++ +V+ GG+I
Sbjct: 77 LLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWAD 136
Query: 889 SEPGTGSTFSFTVTFTEGERNSLDP 913
S G G+T +FT+ + E + + D
Sbjct: 137 SIEGKGTTITFTLPYKEEQEDDWDE 161
|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Length = 177 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 1e-13
Identities = 16/83 (19%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 696 HLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQD 755
+ + ++ F ++ +E + DR V D + Q++ N++ N++K++ +
Sbjct: 4 QIVRFMSLIIDRFE-MTKEQHVEFIRNLPDRDL-YVEIDQDKITQVLDNIISNALKYSPE 61
Query: 756 KGHIFVSVHLADDVRS-KVDVKD 777
GH+ S+ + ++ + VKD
Sbjct: 62 GGHVTFSIDVNEEEELLYISVKD 84
|
| >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Length = 394 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 5e-24
Identities = 42/332 (12%), Positives = 88/332 (26%), Gaps = 82/332 (24%)
Query: 598 IAQVENDY----HEMMELKARAEAADVAKSQFLATVSHEIRTPMN-------GVLGMLQM 646
+ V++ Y +++E ++ A S F+ T+ N G++
Sbjct: 68 VQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDA 127
Query: 647 LMDTELDAAQLD-YAQTAHNSGKDLISLINDVLDQAKI----ESGRLEPEFVPFHLHDVL 701
+ L + + + L+N + + + V+
Sbjct: 128 CTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPSHIGSIDPNCDVVAVV 187
Query: 702 DNVLSLFSS-------KANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQ 754
+ + + + P ++ P ++ L N+++ T
Sbjct: 188 QDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATV 247
Query: 755 DKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFK 814
+ N S P+ +
Sbjct: 248 EHQE-------------------------------------NQPSLTPIEVIVVLGKED- 269
Query: 815 MLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQA------DSSTSRTYGGTG 868
L + + D G G+PL R+F+ D+S + G G
Sbjct: 270 ---------------LTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFG 314
Query: 869 IGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
GL ISR + G++ S G G+
Sbjct: 315 YGLPISRLYAKYFQGDLNLYSLSGYGTDAIIY 346
|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Length = 222 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 6e-23
Identities = 25/155 (16%), Positives = 66/155 (42%), Gaps = 7/155 (4%)
Query: 624 QFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYA-QTAHNSGKDLISLINDVLDQAK 682
+F + +HE+R+P+ + ++ ++ D A H+ L++ +L ++
Sbjct: 4 RFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSR 63
Query: 683 IESGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQII 742
++S + L D+L + + A Q I++ + ++ G P ++
Sbjct: 64 LDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKIDVRLTLNAH-SIKRTGQPLLLSLLV 122
Query: 743 TNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
NL+ N+++++ + V+++ V+D
Sbjct: 123 RNLLDNAVRYSPQGSVVDVTLN-----ADNFIVRD 152
|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Length = 222 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 1e-13
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
V D G G+ EA RI F + T+ G+G+GLSI + + +L G + F +
Sbjct: 148 FIVRDNGPGVTPEALARIGERFYRPPGQTA---TGSGLGLSIVQRIAKLHGMNVEFGNAE 204
Query: 892 GTGSTFSFTVTF 903
G V++
Sbjct: 205 QGGFE--AKVSW 214
|
| >2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} Length = 143 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 1e-22
Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 27/144 (18%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAI--VTCVDCGRAAVDKL-----TPPHNFDACFM 1132
IL ++D+ V+ + E K ++ + G A+D L + +
Sbjct: 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILL 65
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
D+ +P+M+G + ++R + + + +TA
Sbjct: 66 DINIPKMNGIEFLKELR--------------------DDSSFTDIEVFVLTAAYTSKDKL 105
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAV 1216
+ ++ KP + +
Sbjct: 106 AFESLNIRGHLIKPLDYGEAIKLF 129
|
| >1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A* Length = 459 | Back alignment and structure |
|---|
Score = 99.1 bits (247), Expect = 1e-21
Identities = 54/300 (18%), Positives = 98/300 (32%), Gaps = 50/300 (16%)
Query: 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV 988
R LV+DD + L V A A + + +L L +++ D
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIIL--LDVMMPGMD- 59
Query: 989 WDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLR 1048
G + LK +R++P + + DR + G LTKP+
Sbjct: 60 -----GFTVCRKLKDD------PTTRHIPVVLI-TALDGRGDRIQGLESGASDFLTKPID 107
Query: 1049 LSVLIGCFQ------------EDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRV 1096
+L + E+S + + G ++L+VDDN +
Sbjct: 108 DVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGRVLIVDDNERQAQR 167
Query: 1097 AEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEIN 1156
L V D +A + P D ++ DG + T +R E
Sbjct: 168 VAAELGVEHRPVIESDPEKAKISAGGPV---DLVIVNAAAKNFDGLRFTAALRSEE---- 220
Query: 1157 EQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYVSKPFEDEQLYTAV 1216
+P+LAM + + ++ G++D +S+P + ++L V
Sbjct: 221 ----------------RTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARV 264
|
| >3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} Length = 140 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 6e-20
Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 25/138 (18%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+IL+ +D+ R+ L+K G V A++++ + A +DL +P+ DG
Sbjct: 7 PRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVA-RRPYAAMTVDLNLPDQDG 65
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE-QCMKCGMD 1200
+R + I+ ++A+ + E +
Sbjct: 66 VSLIRALRRDSR--------------------TRDLAIVVVSANAREGELEFNSQPLAVS 105
Query: 1201 DYVSKPFEDEQLYTAVAR 1218
++ KP ++ L +
Sbjct: 106 TWLEKPIDENLL---ILS 120
|
| >3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} Length = 136 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 7e-20
Identities = 30/140 (21%), Positives = 44/140 (31%), Gaps = 31/140 (22%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+LVVDDN VNR LK G D A L DL+M G
Sbjct: 10 VLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLD 69
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMKCG 1198
IR E + I+ ++ + + M G
Sbjct: 70 LIRTIRASERA---------------------ALSIIVVSGDTDVEEAVDV-----MHLG 103
Query: 1199 MDDYVSKPFEDEQLYTAVAR 1218
+ D++ KP + +L V +
Sbjct: 104 VVDFLLKPVDLGKLLELVNK 123
|
| >3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Length = 140 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 1e-19
Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 34/143 (23%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE- 1138
K K+IL+V+D+ + L K+G V G AAV+K++ D MD+++ E
Sbjct: 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEG 63
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQ 1193
MDG Q I+ + +P++ +TA V +
Sbjct: 64 MDGVQTALAIQQISE-----------------------LPVVFLTAHTEPAVVEKI---- 96
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAV 1216
YV K ++ L T V
Sbjct: 97 -RSVTAYGYVMKSATEQVLITIV 118
|
| >1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 Length = 149 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 7e-19
Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 33/150 (22%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGA---IVTCVDCGRAAVDKLTPPHNFDAC-------- 1130
+ +LVV+D+ + + L++ G I C+ G A+D L ++
Sbjct: 7 QPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCIT-GDQALDFLYQTGSYCNPDIAPRPAV 65
Query: 1131 -FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQA 1189
+DL +P DG + +I+ + L +P++ MT
Sbjct: 66 ILLDLNLPGTDGREVLQEIK--------------------QDEVLKKIPVVIMTTSSNPK 105
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E C + Y+ KP E ++L V F
Sbjct: 106 DIEICYSYSISSYIVKPLEIDRLTETVQTF 135
|
| >1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ... Length = 128 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 1e-18
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 24/143 (16%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHG--AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
K + LVVDD RR+ LK+ G + D G A++KL + D MP
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAED-GVDALNKLQA-GGYGFVISDWNMP 60
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKC 1197
MDG + IR + +P+L +TA+ + + +
Sbjct: 61 NMDGLELLKTIR--------------------AXXAMSALPVLMVTAEAKKENIIAAAQA 100
Query: 1198 GMDDYVSKPFEDEQLYTAVARFF 1220
G YV KPF L + + F
Sbjct: 101 GASGYVVKPFTAATLEEKLNKIF 123
|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Length = 150 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 3e-17
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 832 VTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVSEP 891
+ ++D G G+P + +F F + +++ G+G+GL++ +L GG + P
Sbjct: 80 IAIDDNGSGVPEGERQVVFERFSRGSTASH---SGSGLGLALVAQQAQLHGGTASLENSP 136
Query: 892 GTGSTFSFT 900
G+
Sbjct: 137 LGGARLVLR 145
|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Length = 150 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-07
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 691 EFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSI 750
+ VP + D+LD + + L +++G P R + N + N++
Sbjct: 4 DHVPVDITDLLDRAAHDAARIYPDLDVSLVP----SPTCIIVGLPAGLRLAVDNAIANAV 59
Query: 751 KFTQDKGHIFVSVHLADDVRSKVDVKD 777
K + +S + ++ + D
Sbjct: 60 KHGGA-TLVQLSAV-SSRAGVEIAIDD 84
|
| >3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} Length = 137 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 4e-17
Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 33/144 (22%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
+IL+V+D+ R + H V G H D D++MP++
Sbjct: 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGL-HAPDVIITDIRMPKL 64
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQC 1194
G + +I+ + ++ ++A I+A
Sbjct: 65 GGLEMLDRIKAGGAKP----------------------YVIVISAFSEMKYFIKA----- 97
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVAR 1218
++ G+ ++ KP E +L +
Sbjct: 98 IELGVHLFLPKPIEPGRLMETLED 121
|
| >3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A 3h1e_A 3h1f_A Length = 129 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 4e-17
Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 36/146 (24%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHG--AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
++LVVDD+ RR+ + L + G ++ G A +KL + D MP
Sbjct: 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEH-GVEAWEKLDANADTKVLITDWNMP 62
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNE 1192
EM+G ++R +PI+ +TA +VI A
Sbjct: 63 EMNGLDLVKKVRSDSR--------------------FKEIPIIMITAEGGKAEVITA--- 99
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+K G+++Y+ KPF + L +
Sbjct: 100 --LKAGVNNYIVKPFTPQVL---KEK 120
|
| >1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E Length = 124 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 4e-17
Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 33/142 (23%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
++IL+VDD R + K G G A+D +T D +D+++P MDG
Sbjct: 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK-ERPDLVLLDMKIPGMDG 62
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
+ +++ ++ I ++ MTA + ++ +
Sbjct: 63 IEILKRMKVIDENI----------------------RVIIMTAYGELDMIQES-----KE 95
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G + +KPF+ +++ AV +
Sbjct: 96 LGALTHFAKPFDIDEIRDAVKK 117
|
| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Length = 152 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 1e-16
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 17/97 (17%)
Query: 822 MEQLGRIKL---------LVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLS 872
+ G+IK+ V+V ++G IP E + +IF+PF + GTG+GLS
Sbjct: 63 TGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFF------TTKTQGTGLGLS 116
Query: 873 ISRCLVELM-GGEIGFVSEPGTGSTFSFTVTFTEGER 908
I R ++E GG+I + G F F + T +R
Sbjct: 117 ICRKIIEDEHGGKIWTENREN-GVVFIFEIPKTPEKR 152
|
| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Length = 152 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-15
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 691 EFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSI 750
EF F+L++++ V LF K + I+ + V D R +Q++ NLV N+I
Sbjct: 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVE-ADRTRIKQVLINLVQNAI 60
Query: 751 KFTQDKGHIFVSVHLADDVRSKVDVKD 777
+ T + G I ++ + +V V +
Sbjct: 61 EATGENGKIKITSEDMYT-KVRVSVWN 86
|
| >3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Length = 394 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 1e-16
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 23/138 (16%)
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+L++DD+ V R L+ V G + D DL+MP++D
Sbjct: 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQ-PDLVICDLRMPQID 63
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G + +IR PI+ ++ + + + ++ G
Sbjct: 64 GLELIRRIRQTA----------------------SETPIIVLSGAGVMSDAVEALRLGAA 101
Query: 1201 DYVSKPFEDEQLYTAVAR 1218
DY+ KP ED + R
Sbjct: 102 DYLIKPLEDLAVLEHSVR 119
|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 | Back alignment and structure |
|---|
Score = 83.7 bits (206), Expect = 1e-16
Identities = 31/234 (13%), Positives = 60/234 (25%), Gaps = 57/234 (24%)
Query: 709 SSKANQKGIELAIYVSDRVPEVVIGDPGR-FRQIITNLVGNSIKFTQDKGHIFVSVHLAD 767
S+K + A + +P R Q + L+ NS+ T D I ++ +
Sbjct: 2 SAKEKFTSLSPAEFFKRNPELAGFPNPARALYQTVRELIENSLDAT-DVHGILPNIKI-- 58
Query: 768 DVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGR 827
+ D +
Sbjct: 59 TIDLIDDARQIYK----------------------------------------------- 71
Query: 828 IKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGT-GIGLSISRCLVELMGGE-I 885
V V D G+GIP + F + + +R G G+G+ + ++ + I
Sbjct: 72 ----VNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPI 127
Query: 886 GFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALVIDDKSIR 939
+ P + +N + V + F G +
Sbjct: 128 EIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWP 181
|
| >1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A Length = 129 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 2e-16
Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 34/144 (23%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHG--AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMP 1137
+ ++L+VDD + +R + AL++ G I D G + + + D MP
Sbjct: 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGD-GEQGMKIMAQ-NPHHLVISDFNMP 62
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNE 1192
+MDG +R N + +TA V +A
Sbjct: 63 KMDGLGLLQAVR--------------------ANPATKKAAFIILTAQGDRALVQKA--- 99
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAV 1216
G ++ ++KPF E++ A+
Sbjct: 100 --AALGANNVLAKPFTIEKMKAAI 121
|
| >4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A Length = 146 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 2e-16
Identities = 25/140 (17%), Positives = 40/140 (28%), Gaps = 30/140 (21%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPP--HNFDACFMDLQMPEMDG 1141
ILV ++ + G GRAA FD +D +
Sbjct: 23 ILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAE 82
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE---QCMKCG 1198
A ++ L + L +T AS++ M+ G
Sbjct: 83 LAAIEKLSRLHPGL----------------------TCLLVTT---DASSQTLLDAMRAG 117
Query: 1199 MDDYVSKPFEDEQLYTAVAR 1218
+ D + P E L A+ R
Sbjct: 118 VRDVLRWPLEPRALDDALKR 137
|
| >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Length = 130 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 3e-16
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 33/136 (24%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L GKQIL+V+D V R + + GA G A++ L D D+ MP
Sbjct: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-GFTPDLMICDIAMPR 63
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQ 1193
M+G + IR+ + P+L ++A D+ +A
Sbjct: 64 MNGLKLLEHIRNRGD----------------------QTPVLVISATENMADIAKA---- 97
Query: 1194 CMKCGMDDYVSKPFED 1209
++ G++D + KP +D
Sbjct: 98 -LRLGVEDVLLKPVKD 112
|
| >3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A* Length = 358 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 7e-16
Identities = 22/134 (16%), Positives = 37/134 (27%), Gaps = 22/134 (16%)
Query: 1084 ILVVDDNMVNRRVAEGALKK-HGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+L+VDD + +L G + AV DL MP +DG
Sbjct: 21 VLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQ-IKPTVILQDLVMPGVDGL 79
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
R +PI+ ++ G +DY
Sbjct: 80 TLLAAYRGNPA--------------------TRDIPIIVLSTKEEPTVKSAAFAAGANDY 119
Query: 1203 VSKPFEDEQLYTAV 1216
+ K + +L +
Sbjct: 120 LVKLPDAIELVARI 133
|
| >3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} Length = 152 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 7e-16
Identities = 24/145 (16%), Positives = 53/145 (36%), Gaps = 30/145 (20%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAI--VTCVDCGRAAVDKL--------TPPHNFDACF 1131
I++++D++ + R+ E +++ G + G +A++ L
Sbjct: 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVL 64
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
+DL +P+M G ++ N P++ +T Q
Sbjct: 65 LDLNLPDMTGIDILKLVKE--------------------NPHTRRSPVVILTTTDDQREI 104
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAV 1216
++C G + Y++KP E A+
Sbjct: 105 QRCYDLGANVYITKPVNYENFANAI 129
|
| >2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Length = 142 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 7e-16
Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 34/142 (23%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
++VVD++ + + AL+K G V + A L D F+D+ +
Sbjct: 5 PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRR-EKIDLVFVDV-FEGEES 62
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
+IR + + ++A +I + +K
Sbjct: 63 LNLIRRIREEFPDT----------------------KVAVLSAYVDKDLIINS-----VK 95
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G DY+ KPF + L V +
Sbjct: 96 AGAVDYILKPFRLDYLLERVKK 117
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A Length = 368 | Back alignment and structure |
|---|
Score = 79.4 bits (197), Expect = 9e-16
Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 29/140 (20%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K++LVVDD L++ G R A K+ F +D+ MP+ DG
Sbjct: 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIK-ELFFPVIVLDVWMPDGDG 59
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE---QCMKCG 1198
I+ + ++ +T S + + +K G
Sbjct: 60 VNFIDFIKENSPDS----------------------VVIVITG---HGSVDTAVKAIKKG 94
Query: 1199 MDDYVSKPFEDEQLYTAVAR 1218
+++ KPF E+ +
Sbjct: 95 AYEFLEKPFSVERFLLTIKH 114
|
| >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Length = 160 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-15
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 824 QLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGG 883
+ R+ + VED G GIP Q +F P + + R GGTG+GLSI+R L++ G
Sbjct: 86 ERYRLAARIDVEDNGPGIPPHLQDTLFYPMV-----SGRE-GGTGLGLSIARNLIDQHSG 139
Query: 884 EIGFVSEPGTGSTFS 898
+I F S PG + FS
Sbjct: 140 KIEFTSWPG-HTEFS 153
|
| >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Length = 160 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 688 LEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVG 747
L V +H V + V++L S + + L +PE+ DP + Q++ N+V
Sbjct: 1 LPGTRVTESIHKVAERVVTLVSMEL-PDNVRLIRDYDPSLPELA-HDPDQIEQVLLNIVR 58
Query: 748 NSI 750
N++
Sbjct: 59 NAL 61
|
| >3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} Length = 135 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 1e-15
Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 32/142 (22%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
++ +VDD+ + + + ++ V A L+ + D +DL MP+MDG
Sbjct: 4 NRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQ-HPRAFLTLSL-NKQDIIILDLMMPDMDG 61
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA--DVIQASNEQC---MK 1196
+ + ++ ++ ++ + S E
Sbjct: 62 IEVIRHLAEHKSPA----------------------SLILISGYDSGVLHSAETLALSCG 99
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
+ + +KP E L
Sbjct: 100 LNVINTFTKPINTEVL---TCF 118
|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Length = 161 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 3e-15
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889
VED G GI E + +F PF++ DS+ RT GTG+GL+I + +V+ G + +
Sbjct: 78 AWFQVEDDGPGIAPEQRKHLFQPFVRGDSA--RTISGTGLGLAIVQRIVDNHNGMLELGT 135
Query: 890 EPGTGSTFSFT 900
G +
Sbjct: 136 SERGGLSIRAW 146
|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Length = 161 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 685 SGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITN 744
+G+ P L+ VL V++ + E+ + V P ++ + N
Sbjct: 1 TGQEMP-MEMADLNAVLGEVIA----AESGYEREIETALYPG-SIEVKMHPLSIKRAVAN 54
Query: 745 LVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKD 777
+V N+ ++ G I VS + R+ V+D
Sbjct: 55 MVVNAARYG--NGWIKVSSGTEPN-RAWFQVED 84
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* Length = 387 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 3e-15
Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 29/138 (21%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+LV++D+ V R + E L G V + G+ A L+ +F+ +DL +P+++G +
Sbjct: 3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS-EKHFNVVLLDLLLPDVNGLE 61
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE---QCMKCGMD 1200
I+ E ++ +T + + + MK G
Sbjct: 62 ILKWIKERSPET----------------------EVIVITG---HGTIKTAVEAMKMGAY 96
Query: 1201 DYVSKPFEDEQLYTAVAR 1218
D+++KP E++ + +
Sbjct: 97 DFLTKPCMLEEIELTINK 114
|
| >3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti} Length = 135 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 4e-15
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 37/145 (25%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKK-HGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
K KQ+ + + +R L V + +DL +
Sbjct: 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD-TRPGIVILDLGGGD 71
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQ 1193
+ G + R L VP++A++
Sbjct: 72 LLGKPGIVEARALWAT----------------------VPLIAVSDELTSEQTRVL---- 105
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVAR 1218
++ D++ KP + ++L +
Sbjct: 106 -VRMNASDWLHKPLDGKEL---LNA 126
|
| >1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A* Length = 124 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 4e-15
Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 27/138 (19%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+ VVDD+ R V E AL G T + G + L D D++MP MDG
Sbjct: 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA-SKTPDVLLSDIRMPGMDGL 63
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA--DVIQASNEQCMKCGMD 1200
QI+ + P++ MTA D+ A + G
Sbjct: 64 ALLKQIKQRHPML----------------------PVIIMTAHSDLDAAV--SAYQQGAF 99
Query: 1201 DYVSKPFEDEQLYTAVAR 1218
DY+ KPF+ ++ V R
Sbjct: 100 DYLPKPFDIDEAVALVER 117
|
| >3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} Length = 140 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 5e-15
Identities = 21/140 (15%), Positives = 48/140 (34%), Gaps = 36/140 (25%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQM-PEMDG 1141
+L+V+D + L+ G ++ D G AV D +D+ + +DG
Sbjct: 12 VLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPD-LRPDIALVDIMLCGALDG 70
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
+ ++ ++PI+ +T+ +A +
Sbjct: 71 VETAARLAAG-----------------------CNLPIIFITSSQDVETFQRA-----KR 102
Query: 1197 CGMDDYVSKPFEDEQLYTAV 1216
Y++KP + L+ ++
Sbjct: 103 VNPFGYLAKPVAADTLHRSI 122
|
| >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Length = 143 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 6e-15
Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 27/140 (19%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTP-PHNFDACFMDLQMPEMD 1140
+ILV+DD + + L+ G V + T ++ D D++MP++
Sbjct: 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLS 63
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA--DVIQASNEQCMKCG 1198
G +I+ + + ++ +T D+ A MK G
Sbjct: 64 GMDILREIKKITPHM----------------------AVIILTGHGDLDNAI--LAMKEG 99
Query: 1199 MDDYVSKPFEDEQLYTAVAR 1218
+Y+ KP + L A+
Sbjct: 100 AFEYLRKPVTAQDLSIAINN 119
|
| >3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} Length = 140 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 8e-15
Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 27/140 (19%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGA--IVTCVDCGRAAVDKLTPPHNFDACFMDLQMP-E 1138
+L++D R + G + + + + MD+ P E
Sbjct: 5 GTVLLIDYFEYEREKTKIIFDNIGEYDFIEVEN-LKKFYSIFKDLDSITLIIMDIAFPVE 63
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
+G + IR+ N + P++ T +K
Sbjct: 64 KEGLEVLSAIRN--------------------NSRTANTPVIIATKSDNPGYRHAALKFK 103
Query: 1199 MDDYVSKPFEDEQLYTAVAR 1218
+ DY+ KP+ ++L
Sbjct: 104 VSDYILKPYPTKRL---ENS 120
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.7 bits (193), Expect = 9e-15
Identities = 87/607 (14%), Positives = 163/607 (26%), Gaps = 180/607 (29%)
Query: 648 MDTELDAAQLDYAQTAHNSGKDLISLINDVLDQAKIESGRLEPEFVP-FHLHDVLDNVLS 706
MD E Q Y KD++S+ E FV F DV D S
Sbjct: 7 MDFETGEHQYQY--------KDILSV--------------FEDAFVDNFDCKDVQDMPKS 44
Query: 707 LFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLA 766
+ S + I+ I D V ++ L+ + Q FV L
Sbjct: 45 ILSKEE----IDHIIMSKDAVS--------GTLRLFWTLLSKQEEMVQK----FVEEVLR 88
Query: 767 DD---VRSKVDVKDKVLEKSLNSVQHKS--DKVYNTLSGFP--VVDRWKSWENFKMLDNT 819
+ + S + + + + S+ + + D++YN F V R +
Sbjct: 89 INYKFLMSPIKTEQR--QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ----------- 135
Query: 820 NTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIG---LSISRC 876
+L R LL V I G G G +++ C
Sbjct: 136 -PYLKL-RQALLELRPAKNVLI----------------------DGVLGSGKTWVALDVC 171
Query: 877 ----LVELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRALV 932
+ M +I F + + Q L +
Sbjct: 172 LSYKVQCKMDFKI-------------FWLNLKNCNSPETVLEMLQ---------KLLYQI 209
Query: 933 IDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDVWDKE 992
+ + R++ H +++ +H + L + LVL +V + +
Sbjct: 210 DPNWTSRSD----HSSNIKLRIHSIQA------ELRRLLKSKPYENCLLVL-L-NVQNAK 257
Query: 993 IGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLRLSVL 1052
+ + L +R + +S + D LT S+L
Sbjct: 258 A---WNAFNLSCKI---LLTTRFKQ----VTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 1053 ---IGC-FQEDPESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNR--RVAEGALKKHGA 1106
+ C Q+ P + + I + + K
Sbjct: 308 LKYLDCRPQDLPREVLT----------TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 1107 IVTCVDCGRAAVDKLTPP---HNFDACFM---DLQMPEMDGFQATWQIRHLENEINEQIA 1160
I+ ++++ L P FD + +P W + +
Sbjct: 358 II------ESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-ILLSLIWF--DVIKSDVMVVV 408
Query: 1161 SG---ESSAEMFGNVGLWHVPILAMTADVIQASNEQCM-----------KCGMDDYVSKP 1206
+ S E +P + + ++ NE + K D + P
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELK-VKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 1207 FEDEQLY 1213
+ D+ Y
Sbjct: 468 YLDQYFY 474
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 6e-12
Identities = 80/512 (15%), Positives = 161/512 (31%), Gaps = 150/512 (29%)
Query: 370 HSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDEYAPVIFSQETVSHIVSID 429
H + E E Q+ +K + + V + D VQD + S+E + HI+
Sbjct: 6 HMDFETGEHQYQYK-DILSVFEDAFVDN-----FDCKDVQDMPKSI-LSKEEIDHII--- 55
Query: 430 MMSGKEDREN-------ILRARASG------KGVLTPPFKLLKSNHLGVVLTFAVYNTDL 476
+D + L ++ + VL +K L S T+
Sbjct: 56 ---MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP----------IKTEQ 102
Query: 477 PQDATPEQRIEATLGYLG------ASYDVP--SLVEKL---LHQLASKQTIVVNVYDTTN 525
Q + + L A Y+V KL L +L + ++++
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID------ 156
Query: 526 ASAPINMYGPDVTDTGLLRVSNLDFG------DPSRKHEMHCRFKQKPPVPW-TAINASI 578
+ G G D +++ C+ K + W N +
Sbjct: 157 -----GVLG---------------SGKTWVALDVCLSYKVQCKMDFK--IFWLNLKNCNS 194
Query: 579 GVVVITLLVGHIFHAAINRIAQVENDYHE----MMELKARAEAADVAKSQFLATVSHEIR 634
V+ +L + Q++ ++ +K R + + L + +E
Sbjct: 195 PETVLEMLQ--------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN- 245
Query: 635 TPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSG-KDLI----SLINDVLDQAKIESGRLE 689
L +L++ + +A + A N K L+ + D L A L+
Sbjct: 246 --------CLLVLLNVQ-NAKAWN----AFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 690 PEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNS 749
+ D V SL + + +L EV+ +P +++ S
Sbjct: 293 HHSMTLT----PDEVKSLLLKYLDCRPQDLP-------REVLTTNP-----RRLSIIAES 336
Query: 750 IKFTQDKGHIFVSVHLADDVR-SKVDVKDKVLEKSLNSVQHKSDK-VYNTLSGFP----- 802
I+ D+ + D ++E SLN ++ + +++ LS FP
Sbjct: 337 IR--DGLATW-------DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 803 ---VVDRWKSWENFKMLDNTNTMEQLGRIKLL 831
++ W + D + +L + L+
Sbjct: 388 PTILLSLI--WFDVIKSDVMVVVNKLHKYSLV 417
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 2e-09
Identities = 91/696 (13%), Positives = 194/696 (27%), Gaps = 227/696 (32%)
Query: 30 LQGPDRVNRRSTLAFLWLLGFVIVGSICFLLSCDGGA-----FVGNEEEE------GRMS 78
+ D V+ TL W L FV +
Sbjct: 55 IMSKDAVSG--TLRLFWTL-------------LSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 79 CEKKA-----QIFLQHSNVSHNQLHALATLF-SESDQIASLK-CTRE--PGSGMLLHNGI 129
E++ +++++ + +N A S L+ E P +L+ G
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-G- 157
Query: 130 TCAMKVPYSKKQEFQKQSIWLAEDVKQMDQCPVEDVNVSWKLDHSVLKNISHARTW---S 186
+ K W+A DV + V + W
Sbjct: 158 ---VL-------GSGKT--WVALDVCL---------------SYKVQCKMDFKIFWLNLK 190
Query: 187 NCTRDHFKILSFCLFKGCWWFICGMVVICIIVSLLFKSRRNHKHKHDQLQPVSQQRQMIL 246
NC V+ ++ LL++ N + D + + I
Sbjct: 191 NCNSPE-------------------TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 247 QQKQ--QQQTPHPPRSAGKWRMKILVVFVLLGIAISVWLFWLLKEKMHLRRKETL----- 299
+ + + P+ LL + ++V +L K L
Sbjct: 232 AELRRLLKSKPYE-NC-------------LL-VLLNVQNAKAWN-AFNLSCK-ILLTTRF 274
Query: 300 ASMCD-----ERARMLQDQFNVSMNHVHALAILVSTFHHRKH--PSAVDQKTFGEYTERT 352
+ D + D ++++ ++L+ R P V
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-------- 326
Query: 353 AFERPLT-SGVAYALKVLHSEREQFEKQHGWKIKKMETEDQTLVQDCTPENLDPAPVQDE 411
P S +A +++ + + ++ + K+ + ++ L+PA +
Sbjct: 327 ----PRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-------IESSL-NVLEPAEYRKM 374
Query: 412 Y-APVIFSQETV---SHIVSI---DMMSGKEDRENILR--ARASGKGVLTPPFKLLKSNH 462
+ +F + + ++S+ D++ D ++ + S L++
Sbjct: 375 FDRLSVF-PPSAHIPTILLSLIWFDVIK--SDVMVVVNKLHKYS----------LVEKQ- 420
Query: 463 LGVVLTFAVYNTDLPQDATPEQRIEATLGYLGASYDVPSLVEKLLHQLASKQTIVVNVYD 522
T ++ + + + E LH+ + +D
Sbjct: 421 -PKESTISIP--SIYLELKVKLENEYA-----------------LHRSIVDHYNIPKTFD 460
Query: 523 TTNASAPIN-----------MYGPDVTD-TGLLRVSNLDFGDPSRKHEMHCRF-KQKPPV 569
+ + P + + + L R+ LDF RF +QK
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-----------RFLEQKIRH 509
Query: 570 PWTAINASIGVVVITLLVGHIFHAAINRIAQVENDYHEMMELKARAEAADVAKSQFLATV 629
TA NAS G ++ TL + I + Y ++ + FL +
Sbjct: 510 DSTAWNAS-GSILNTLQQLKFYK---PYICDNDPKYERLVN--------AILD--FLPKI 555
Query: 630 SHE-IRTPMNGVLGMLQMLMDTELDAAQLDYAQTAH 664
I + +L++ + E +A + AH
Sbjct: 556 EENLICSKY---TDLLRIALMAEDEA----IFEEAH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 1e-06
Identities = 58/390 (14%), Positives = 114/390 (29%), Gaps = 115/390 (29%)
Query: 884 EIGFVSEPGTGSTFSFTVTFTEGER-------NSLDP--KW---------QQYVPDVSEF 925
I + +G+ F ++ E L K+ +Q +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLID 985
R + +D + +Y++ RL+ ++L L +L
Sbjct: 113 IEQRDRLYNDNQV---FAKYNVSRLQPY------LKL----------RQALLEL------ 147
Query: 986 KDVWDKEIGLVLHYMLKQQRRKGG-------LEISRNLP-------KIFLLATSISETDR 1031
+++ + G L++ + KIF L ++ +
Sbjct: 148 ----RPAKNVLIDGV-------LGSGKTWVALDVCLSYKVQCKMDFKIFWL--NLKNCNS 194
Query: 1032 DELKSDGIVTLLTKPLRLSVLI---GCFQEDPESSKKLQQKRKKPSLGHLLKGKQ----I 1084
E +L +L I + D S+ KL+ + L LLK K +
Sbjct: 195 PET-------VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 1085 LVVDDNMV-NRRVAEGALKKHGAI-VTCVDCGRAAVDKLTPPHNFDACFMDLQMP----E 1138
LV+ + V N + A I +T + D L+ M E
Sbjct: 248 LVLLN--VQNAKAWN-AFNLSCKILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 1139 MDGFQATW------QIRHLENEINEQIAS--GESSAEMFGNVGLW-HVPILAMTADVIQA 1189
+ + + N + S ES + W HV +T +I++
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT-TIIES 361
Query: 1190 SNEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
S +P E +++ ++ F
Sbjct: 362 SLNVL----------EPAEYRKMFDRLSVF 381
|
| >2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} Length = 147 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 1e-14
Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 34/144 (23%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
K +I++VD + + AL + G + AV + + MP++
Sbjct: 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAV-KTHPHLIITEANMPKI 65
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQC 1194
G ++ N +P++A++ + Q
Sbjct: 66 SGMDLFNSLK--------------------KNPQTASIPVIALSGRATAKEEAQL----- 100
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVAR 1218
+ G D+++KP +L AR
Sbjct: 101 LDMGFIDFIAKPVNAIRL---SAR 121
|
| >2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1 Length = 138 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-14
Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 34/152 (22%)
Query: 1070 RKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDA 1129
K H ++ ++ +V+D + + + L + GA VT G A + D
Sbjct: 4 DKIHHHHHHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDL 63
Query: 1130 CFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA---DV 1186
+ Q+ ++ F ++ + +L +T ++
Sbjct: 64 LIVSDQLVDLSIFSLLDIVKEQTKQ----------------------PSVLILTTGRHEL 101
Query: 1187 IQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
I++S Y+ KPF +L A
Sbjct: 102 IESSE------HNLSYLQKPFAISEL---RAA 124
|
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471 | Back alignment and structure |
|---|
Score = 76.7 bits (188), Expect = 1e-14
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 3/115 (2%)
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSR-TYGGTGIGLSISRCLVELMGGE-IGF 887
V V D G+GIP + F + + +R T G G+G+ + ++ + I
Sbjct: 71 YKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEI 130
Query: 888 VSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLRA-LVIDDKSIRAE 941
+ P + +N + V + F G + I +A+
Sbjct: 131 ETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAK 185
|
| >1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A Length = 149 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-14
Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 28/145 (19%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAI--VTCVDCGRAAVDKLTPPHNFDAC------F 1131
K IL+V+D+ + R+ + LK + + G AA+ L ++
Sbjct: 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLIL 66
Query: 1132 MDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASN 1191
+DL +P+ DG + +I+ N L +P++ +T +
Sbjct: 67 LDLNLPKKDGREVLAEIKQ--------------------NPDLKRIPVVVLTTSHNEDDV 106
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAV 1216
+ ++ Y++K + L+ V
Sbjct: 107 IASYELHVNCYLTKSRNLKDLFKMV 131
|
| >3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} Length = 137 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-14
Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 33/142 (23%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
++L+V+D+ + + +K + V+ GR A+ + +DL++P+M G
Sbjct: 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER-SKPQLIILDLKLPDMSG 63
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
I + ++ TA + ++
Sbjct: 64 EDVLDWINQNDIPT----------------------SVIIATAHGSVDLAVNL-----IQ 96
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G +D++ KP ++L T+VA
Sbjct: 97 KGAEDFLEKPINADRLKTSVAL 118
|
| >3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri} Length = 132 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-14
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 35/142 (24%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K+ILVVDD+ E LK+ V G A KL+ +DL MP++DG
Sbjct: 7 KRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLS-TFEPAIMTLDLSMPKLDG 65
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
+R + + P + + + + QA +
Sbjct: 66 LDVIRSLR---------------------QNKVANQPKILVVSGLDKAKLQQA-----VT 99
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G DDY+ KPF+++ L + R
Sbjct: 100 EGADDYLEKPFDNDAL---LDR 118
|
| >3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} Length = 154 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-14
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 38/146 (26%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKL--TPPHNFDACFMDLQMP 1137
+ +IL+V+D+ + L++ G V GR AV L T P D D+ MP
Sbjct: 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP---DLIISDVLMP 62
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNE 1192
EMDG+ ++ G L +P++ +T DV+++
Sbjct: 63 EMDGYALCRWLK--------------------GQPDLRTIPVILLTILSDPRDVVRS--- 99
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAVAR 1218
++CG DD+++KP +D L +
Sbjct: 100 --LECGADDFITKPCKDVVL---ASH 120
|
| >3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} Length = 143 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 3e-14
Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 25/132 (18%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGA---IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
IL+++D+ + L+ I + A D L D +DL M MD
Sbjct: 11 ILIIEDDKEFADMLTQFLENLFPYAKIKIAYN-PFDAGDLLHT-VKPDVVMLDLMMVGMD 68
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
GF +I+ A ++ ++AMT + + + + G +
Sbjct: 69 GFSICHRIKS-----TPATA---------------NIIVIAMTGALTDDNVSRIVALGAE 108
Query: 1201 DYVSKPFEDEQL 1212
KP L
Sbjct: 109 TCFGKPLNFTLL 120
|
| >2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile} Length = 136 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 3e-14
Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 37/142 (26%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+IL++D + N + +G L++ G + A+ K+ + +D F+++ + + DG
Sbjct: 5 TKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS-NKYDLIFLEIILSDGDG 63
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
+ +IR + PI+ MT ++ A +
Sbjct: 64 WTLCKKIR-------------NVT----------TCPIVYMTYINEDQSILNA-----LN 95
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G DDY+ KP E L A+
Sbjct: 96 SGGDDYLIKPLNLEIL---YAK 114
|
| >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Length = 152 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 3e-14
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 830 LLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFVS 889
L + VED G GIPL + IF + D+ G G+GL+++R + E G+I
Sbjct: 75 LYIVVEDDGPGIPLSKREVIFDRGQRVDTLRP----GQGVGLAVAREITEQYEGKIVAGE 130
Query: 890 EPGTGSTFSFT 900
G+
Sbjct: 131 SMLGGARMEVI 141
|
| >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Length = 152 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 2e-08
Identities = 16/84 (19%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 694 PFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFT 753
+ +LDN+ S + +KG+ +++ +S + +G+ F +++ N++ N+ K+
Sbjct: 3 LHPVAPLLDNLTSALNKVYQRKGVNISLDISPEIS--FVGEQNDFVEVMGNVLDNACKYC 60
Query: 754 QDKGHIFVSVHLADDVRSKVDVKD 777
+ +S D+ + V+D
Sbjct: 61 --LEFVEISARQTDE-HLYIVVED 81
|
| >3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} Length = 138 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 5e-14
Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 34/142 (23%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
ILVVDD+ + V L++ G G ++ L D +D+ M MDG
Sbjct: 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALN-ATPPDLVLLDIMMEPMDG 62
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
++ +I+ + +P+L +TA +
Sbjct: 63 WETLERIK--------------------TDPATRDIPVLMLTAKPLTPEEANE-----YG 97
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
++DY+ KP QL
Sbjct: 98 SYIEDYILKPTTHHQL---YEA 116
|
| >1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 Length = 140 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 5e-14
Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 31/152 (20%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAI--VTCVDCGRAAVDKLTPPHNFDAC------FMD 1133
K+I +V+DN + R+ + AL V V G A+ L + +
Sbjct: 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLX 62
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
L +P+ DG + +I+ L +P++ ++ + +
Sbjct: 63 LNLPKKDGREVLAEIKSDPT--------------------LKRIPVVVLSTSINEDDIFH 102
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAV---ARFFMS 1222
++ Y++K QL+ V F++S
Sbjct: 103 SYDLHVNCYITKSANLSQLFQIVKGIEEFWLS 134
|
| >3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} Length = 140 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 9e-14
Identities = 23/142 (16%), Positives = 57/142 (40%), Gaps = 35/142 (24%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K+IL++D +R + L ++ + + A++++ H+ D +D+ + +
Sbjct: 4 KKILIIDQQDFSRIELKNFLDSEYLVIESKN-EKEALEQIDH-HHPDLVILDMDIIGENS 61
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
+++ + GL +VP++ + + ++ +
Sbjct: 62 PNLCLKLKR--------------------SKGLKNVPLILLFSSEHKEAIVNG-----LH 96
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G DDY++KPF L ++R
Sbjct: 97 SGADDYLTKPFNRNDL---LSR 115
|
| >3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} Length = 157 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 1e-13
Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 24/137 (17%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPH-NFDACFMDLQMPEMDG 1141
+L+VDD++ + G I+ G AV K + N D + + MP+MDG
Sbjct: 39 VLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDG 98
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
I + ++ ++A + + C+ G
Sbjct: 99 ITCLSNIMEFDKN----------------------ARVIMISALGKEQLVKDCLIKGAKT 136
Query: 1202 YVSKPFEDEQLYTAVAR 1218
++ KP + ++ V
Sbjct: 137 FIVKPLDRAKVLQRVMS 153
|
| >3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} Length = 142 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 1e-13
Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 35/144 (24%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
KG +++VDD+ R + L G + D G +D L +D+ MP M
Sbjct: 7 KGD-VMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK-KGFSGVVLLDIMMPGM 64
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQC 1194
DG+ I E + I+ +TA +
Sbjct: 65 DGWDTIRAILDNSLEQG--------------------IAIVMLTAKNAPDAKMIG----- 99
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVAR 1218
++ + DY++KPF++E L + +
Sbjct: 100 LQEYVVDYITKPFDNEDL---IEK 120
|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 1e-13
Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 5/141 (3%)
Query: 821 TMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQAD--SSTSRTYGGTGIGLSISRCLV 878
+E+ G + V +ED G GI E ++F + + ++ G GIG+S +
Sbjct: 65 QVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYA 124
Query: 879 ELMGGEIGFVSEPGTGSTFSFTVTFTEGERNSLDPKWQQYVPDVSEFRGLR-ALVIDDKS 937
++ G + + + + + V D G + L +
Sbjct: 125 QMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELEMRAAY 184
Query: 938 IRAEVTRYHLQRLEMAVHVAN 958
++ R + A + N
Sbjct: 185 VKGR--RQSIYEYLKATAIVN 203
|
| >2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} Length = 119 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 1e-13
Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 27/138 (19%)
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
IL++++ V L G V + G A+D+L M P+
Sbjct: 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLD-LLQPIVILMAWPPPDQS 59
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
+R + H P++ + + +
Sbjct: 60 CLLLLQHLREHQ--------------------ADPHPPLVLFLGEPPV---DPLLTAQAS 96
Query: 1201 DYVSKPFEDEQLYTAVAR 1218
+SKP + + L +
Sbjct: 97 AILSKPLDPQLL---LTT 111
|
| >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} Length = 154 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 2e-13
Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 34/141 (24%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+++VDD + +K+ G + A++ L + D++MPEM G
Sbjct: 10 VMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALK-GTSVQLVISDMRMPEMGGEV 68
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMKCG 1198
Q+ +I + ++ I A + G
Sbjct: 69 FLEQVAKSYPDI----------------------ERVVISGYADAQATIDA-----VNRG 101
Query: 1199 -MDDYVSKPFEDEQLYTAVAR 1218
+ ++ KP+EDE ++ V +
Sbjct: 102 KISRFLLKPWEDEDVFKVVEK 122
|
| >3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei} Length = 184 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 2e-13
Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 33/142 (23%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K LV+DDN V L++ G V A+ F+ + L + G
Sbjct: 8 KNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAG-AEKFEFITVXLHLGNDSG 66
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
+ L+ + IL +T +QA +K
Sbjct: 67 LSLIAPLCDLQPD----------------------ARILVLTGYASIATAVQA-----VK 99
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G D+Y++KP E + A+
Sbjct: 100 DGADNYLAKPANVESILAALQT 121
|
| >3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus} Length = 133 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-13
Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 26/135 (19%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+L+V+++ R L T D G + + + H D D+ M MDG+
Sbjct: 7 VLIVENSWTMRETLRLLLSGEFDCTTAAD-GASGLQQALA-HPPDVLISDVNMDGMDGYA 64
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
R L H+P++ ++ + + D Y+
Sbjct: 65 LCGHFR--------------------SEPTLKHIPVIFVSG-YAPRTEGPADQPVPDAYL 103
Query: 1204 SKPFEDEQLYTAVAR 1218
KP + L +A+
Sbjct: 104 VKPVKPPVL---IAQ 115
|
| >3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* Length = 116 | Back alignment and structure |
|---|
Score = 65.5 bits (161), Expect = 6e-13
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 38/142 (26%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K+ILVVDD R + + L++ G + + G A+ K N+D +D++MP + G
Sbjct: 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS-GNYDLVILDIEMPGISG 60
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
+ +IR + + I+ +TA + +
Sbjct: 61 LEVAGEIRKKKKD----------------------AKIILLTAYSHYRSDMSS------- 91
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
D+YV K F ++L +
Sbjct: 92 WAADEYVVKSFNFDEL---KEK 110
|
| >1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A Length = 123 | Back alignment and structure |
|---|
Score = 65.9 bits (162), Expect = 6e-13
Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 37/144 (25%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
+ IL+V+D +V R + + G V G L+ ++ + MD+ +P
Sbjct: 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLPGK 60
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQC 1194
+G ++R E + +V ++ +T D I
Sbjct: 61 NGLLLARELR-------------EQA----------NVALMFLTGRDNEVDKILG----- 92
Query: 1195 MKCGMDDYVSKPFEDEQLYTAVAR 1218
++ G DDY++KPF +L R
Sbjct: 93 LEIGADDYITKPFNPREL---TIR 113
|
| >2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* Length = 120 | Back alignment and structure |
|---|
Score = 64.7 bits (159), Expect = 1e-12
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 37/142 (26%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K+IL+VDD + + + K G V GR A+++ D +DL +PE+DG
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-EQPDIIILDLMLPEIDG 60
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
+ IR ++S VPIL ++A D + ++
Sbjct: 61 LEVAKTIR-------------KTS----------SVPILMLSAKDSEFDKVIG-----LE 92
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G DDYV+KPF + +L AR
Sbjct: 93 LGADDYVTKPFSNREL---QAR 111
|
| >2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} Length = 140 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 1e-12
Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 38/147 (25%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE--- 1138
I++VDDN + LK H + V + + L N + +D+
Sbjct: 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLR-EENPEVVLLDMNFTSGIN 62
Query: 1139 --MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA--DV---IQASN 1191
+G +I+ ++ P++ TA D+ ++
Sbjct: 63 NGNEGLFWLHEIKRQYRDL----------------------PVVLFTAYADIDLAVRG-- 98
Query: 1192 EQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+K G D+V KP+++++L +
Sbjct: 99 ---IKEGASDFVVKPWDNQKLLETLLN 122
|
| >3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Length = 153 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 2e-12
Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 34/141 (24%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
IL+VD V + + L + A+ L D +P+MDG
Sbjct: 17 ILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLA-SREVDLVISAAHLPQMDGPT 75
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMKCG 1198
+I + +T + +A + G
Sbjct: 76 LLARIHQQYPST----------------------TRILLTGDPDLKLIAKA-----INEG 108
Query: 1199 -MDDYVSKPFEDEQLYTAVAR 1218
+ Y+SKP++D++L A+ +
Sbjct: 109 EIYRYLSKPWDDQELLLALRQ 129
|
| >1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Length = 208 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 27/137 (19%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+ VVDD+M R L+ G V DC ++ P +D++MP M G +
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHR-RPEQHGCLVLDMRMPGMSGIE 65
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA--DVIQASNEQCMKCGMDD 1201
Q+ + + +PI+ +TA D+ + MK G +
Sbjct: 66 LQEQLTAISD----------------------GIPIVFITAHGDIPMTV--RAMKAGAIE 101
Query: 1202 YVSKPFEDEQLYTAVAR 1218
++ KPFE++ L A+ +
Sbjct: 102 FLPKPFEEQALLDAIEQ 118
|
| >1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A Length = 121 | Back alignment and structure |
|---|
Score = 63.6 bits (156), Expect = 3e-12
Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 37/142 (26%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+L+V+D RR AL+ G V + + + + D +DL +P+ DG
Sbjct: 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-TRKPDLIILDLGLPDGDG 60
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
+ +R + SA VP++ ++A D I A +
Sbjct: 61 IEFIRDLR-------------QWSA----------VPVIVLSARSEESDKIAA-----LD 92
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G DDY+SKPF +L AR
Sbjct: 93 AGADDYLSKPFGIGEL---QAR 111
|
| >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Length = 155 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 3e-12
Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 27/137 (19%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+ ++DD+ R+ + L+ G V+ A+ L+ D++MP MDG
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA-DFAGIVISDIRMPGMDGLA 64
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA--DVIQASNEQCMKCGMDD 1201
+I L+ ++ P++ +T D+ A Q ++ G D
Sbjct: 65 LFRKILALDPDL----------------------PMILVTGHGDIPMAV--QAIQDGAYD 100
Query: 1202 YVSKPFEDEQLYTAVAR 1218
+++KPF ++L + R
Sbjct: 101 FIAKPFAADRLVQSARR 117
|
| >3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A Length = 120 | Back alignment and structure |
|---|
Score = 63.2 bits (155), Expect = 4e-12
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 37/142 (26%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K+ILVVDD + E L+K G V C G AV+ + D +D+ +P DG
Sbjct: 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE-ELQPDLILLDIMLPNKDG 61
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
+ ++R + +PI+ +TA D + ++
Sbjct: 62 VEVCREVR-------------KKY----------DMPIIMLTAKDSEIDKVIG-----LE 93
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G DDYV+KPF +L +AR
Sbjct: 94 IGADDYVTKPFSTREL---LAR 112
|
| >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Length = 120 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 4e-12
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 32/141 (22%)
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAIV--TCVDCGRAAVDK---LTPPHNFDACFMDLQ 1135
GK++L+VDD R + + + K G V + GR AV+K L P D MD+
Sbjct: 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATN-GREAVEKYKELKP----DIVTMDIT 56
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MPEM+G A +I ++ + I+ +A QA + +
Sbjct: 57 MPEMNGIDAIKEIMKIDP----------------------NAKIIVCSAMGQQAMVIEAI 94
Query: 1196 KCGMDDYVSKPFEDEQLYTAV 1216
K G D++ KPF+ ++ A+
Sbjct: 95 KAGAKDFIVKPFQPSRVVEAL 115
|
| >1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 63.2 bits (155), Expect = 5e-12
Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 37/142 (26%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
I++V+D V + + + G V+ G + + + D +D+ +P+ +G
Sbjct: 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ-NQSVDLILLDINLPDENG 61
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
T +R E S V I+ +T D I ++
Sbjct: 62 LMLTRALR-------------ERS----------TVGIILVTGRSDRIDRIVG-----LE 93
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G DDYV+KP E +L V R
Sbjct: 94 MGADDYVTKPLELREL---VVR 112
|
| >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Length = 145 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 7e-12
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 829 KLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEIGFV 888
+ +TV D GVGIP P +T +G+G +I +E E+
Sbjct: 74 VVHLTVRDEGVGIPDIE--EARQPL----FTTKPELERSGMGFTI----MENFMDEVIVE 123
Query: 889 SEPGTGSTFSFT 900
SE G+T
Sbjct: 124 SEVNKGTTVYLK 135
|
| >3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A Length = 286 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 7e-12
Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 34/138 (24%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVT-CVDCGRAAVDKLTPPHNFDACFMDLQMP-EMDG 1141
+L+++D V E +++ G VT A++ +T D+Q+ G
Sbjct: 163 VLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR-RTPGLVLADIQLADGSSG 221
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA---DVIQASNEQCMKCG 1198
A I G VP++ +TA ++ +
Sbjct: 222 IDAVKDIL-----------------------GRMDVPVIFITAFPERLLTG-----ERPE 253
Query: 1199 MDDYVSKPFEDEQLYTAV 1216
++KPF+ E + A+
Sbjct: 254 PTFLITKPFQPETVKAAI 271
|
| >1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A Length = 205 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 2e-11
Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 31/137 (22%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDK---LTPPHNFDACFMDLQMPEM 1139
+L+ +D + R L++ G IV G+ AV+ P D MD++MP
Sbjct: 16 VLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKP----DLVIMDVKMPRR 71
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG A +I PI+ +TA + E+ G
Sbjct: 72 DGIDAASEIA-----------------------SKRIAPIVVLTAFSQRDLVERARDAGA 108
Query: 1200 DDYVSKPFEDEQLYTAV 1216
Y+ KPF L A+
Sbjct: 109 MAYLVKPFSISDLIPAI 125
|
| >3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica} Length = 151 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 2e-11
Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 24/138 (17%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
++IL+VDD+ + L + TC G A+ + F +D++MP M+G
Sbjct: 5 ERILLVDDDYSLLNTLKRNLSFDFEVTTCES-GPEALACIKKSDPFSVIMVDMRMPGMEG 63
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM-D 1200
+ + R + + +G ++A + G
Sbjct: 64 TEVIQKARLISPNSVYLMLTGNQDLTT-----------------AMEA-----VNEGQVF 101
Query: 1201 DYVSKPFEDEQLYTAVAR 1218
+++KP + + A+
Sbjct: 102 RFLNKPCQMSDIKAAINA 119
|
| >1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A* Length = 220 | Back alignment and structure |
|---|
Score = 64.0 bits (157), Expect = 2e-11
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 39/142 (27%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+I VVDD+ + L++ G + T + G ++ F +D+ +P+ G
Sbjct: 3 WKIAVVDDDKNILKKVSEKLQQLGRVKTFLT-GEDFLNDE---EAFHVVVLDVMLPDYSG 58
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
++ I+ E+ E ++ +T V++ +
Sbjct: 59 YEICRMIK-------------ETRPE---------TWVILLTLLSDDESVLKG-----FE 91
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G DDYV+KPF E L +AR
Sbjct: 92 AGADDYVTKPFNPEIL---LAR 110
|
| >3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} Length = 136 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-11
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 34/142 (23%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+L+VDD+ + E L+ G V G A+ ++ + DA D+ +P +DG
Sbjct: 5 HTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIY-KNLPDALICDVLLPGIDG 63
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
+ ++R + +PIL +TA I +
Sbjct: 64 YTLCKRVR--------------------QHPLTKTLPILMLTAQGDISAKIAG-----FE 98
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G +DY++KPFE ++L V R
Sbjct: 99 AGANDYLAKPFEPQEL---VYR 117
|
| >2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV} Length = 230 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 5e-11
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 37/142 (26%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+L+V+D L+K G T V G AA+ + D +DL +P M G
Sbjct: 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFD-RAGADIVLLDLMLPGMSG 63
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
Q+R + VP++ +TA D + ++
Sbjct: 64 TDVCKQLRARSS-----------------------VPVIMVTARDSEIDKVVG-----LE 95
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G DDYV+KP+ +L +AR
Sbjct: 96 LGADDYVTKPYSAREL---IAR 114
|
| >1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Length = 126 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 5e-11
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 29/138 (21%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC-FMDLQMPEMDGF 1142
+ +VDD R+ L +G V A + + DL+MP+M G
Sbjct: 6 VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPD--VRNGVLVTDLRMPDMSGV 63
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA--DVIQASNEQCMKCGMD 1200
+ L + + ++P + +T DV A + MK G
Sbjct: 64 E-------LLRNLGDLKI---------------NIPSIVITGHGDVPMAV--EAMKAGAV 99
Query: 1201 DYVSKPFEDEQLYTAVAR 1218
D++ KPFED + A+ R
Sbjct: 100 DFIEKPFEDTVIIEAIER 117
|
| >3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} Length = 132 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 6e-11
Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 26/137 (18%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K+IL+VDD+ + L+ G V + K+ F+ +++P+M+G
Sbjct: 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIE-NEFFNLALFXIKLPDMEG 62
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ + L + + +T ++ + G D
Sbjct: 63 TELLEKAHKLRPGM----------------------KKIMVTGYASLENSVFSLNAGADA 100
Query: 1202 YVSKPFEDEQLYTAVAR 1218
Y+ KP L + +
Sbjct: 101 YIMKPVNPRDL---LEK 114
|
| >1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 8e-11
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 36/142 (25%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K+ILVVDD + + L++ G V G A+ K D +D+ +P++DG
Sbjct: 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAE-TEKPDLIVLDVMLPKLDG 62
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
+ Q+R + PIL +TA D + ++
Sbjct: 63 IEVCKQLRQQKLMF----------------------PILMLTAKDEEFDKVLG-----LE 95
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G DDY++KPF ++ AR
Sbjct: 96 LGADDYMTKPFSPREV---NAR 114
|
| >2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A Length = 121 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 9e-11
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 42/143 (29%)
Query: 1084 ILVVDDNMVNRRVAEG---ALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+LVV+D N + ++ G V + + A L H D +DL +P+ D
Sbjct: 3 VLVVED---NALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN-EHIPDIAIVDLGLPDED 58
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCM 1195
G + R ++ S +PIL +TA D ++ +
Sbjct: 59 GLSLIRRWR----------SNDVS------------LPILVLTARESWQDKVEV-----L 91
Query: 1196 KCGMDDYVSKPFEDEQLYTAVAR 1218
G DDYV+KPF E++ +AR
Sbjct: 92 SAGADDYVTKPFHIEEV---MAR 111
|
| >2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A Length = 127 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 1e-10
Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 34/142 (23%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQM-PEMD 1140
K+IL+V+ + AL+ G V G+ +V+++ D + + + +
Sbjct: 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIR-RDRPDLVVLAVDLSAGQN 64
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA----DVIQASNEQCMK 1196
G+ +++ + +VPI+ + + +K
Sbjct: 65 GYLICGKLK----------KDDDLK----------NVPIVIIGNPDGFAQHRK-----LK 99
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
D+YV+KP + +QL V R
Sbjct: 100 AHADEYVAKPVDADQL---VER 118
|
| >2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A Length = 238 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 37/142 (26%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
++ILVVDD+ + L+ G + G A+ + D +DL +P M+G
Sbjct: 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVR-ELRPDLVLLDLMLPGMNG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
+R VPI+ +TA DV+ ++
Sbjct: 65 IDVCRVLRADSG-----------------------VPIVMLTAKTDTVDVVLG-----LE 96
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G DDY+ KPF+ ++L VAR
Sbjct: 97 SGADDYIMKPFKPKEL---VAR 115
|
| >2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B Length = 139 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-10
Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 23/135 (17%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
IL+VDD + + AL+ V AA+ L D +MP G
Sbjct: 4 ILLVDDEPHSLAAMKLALED-DFDVLTAQGAEAAIAILEE-EWVQVIICDQRMPGRTGVD 61
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
++R E I +G + + ++ A N+ G+ ++
Sbjct: 62 FLTEVRERWPETVRIIITGYTDSAS-----------------MMAAIND----AGIHQFL 100
Query: 1204 SKPFEDEQLYTAVAR 1218
+KP+ EQL ++
Sbjct: 101 TKPWHPEQLLSSARN 115
|
| >3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C Length = 122 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 4e-10
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 24/137 (17%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K++L+VDD+ V R++ LKK G V + G+ A++KL+ D + + MP MDG
Sbjct: 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE-FTPDLIVLXIMMPVMDG 61
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
F +++ E +P++ +TA + + G
Sbjct: 62 FTVLKKLQEKEE--------------------WKRIPVIVLTAKGGEEDESLALSLGARK 101
Query: 1202 YVSKPFEDEQLYTAVAR 1218
+ KPF Q +
Sbjct: 102 VMRKPFSPSQF---IEE 115
|
| >1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A Length = 233 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 1e-09
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 36/140 (25%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+LVVDD+ E L+ G V G A+ T + DA +D+ MP +DG
Sbjct: 10 VLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE-NRPDAIVLDINMPVLDGVS 68
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMKCG 1198
+R ++N+ VP+ ++A D + ++ G
Sbjct: 69 VVTALRAMDND----------------------VPVCVLSARSSVDDRVAG-----LEAG 101
Query: 1199 MDDYVSKPFEDEQLYTAVAR 1218
DDY+ KPF +L VAR
Sbjct: 102 ADDYLVKPFVLAEL---VAR 118
|
| >2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae} Length = 132 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 33/145 (22%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L+ IL+ DD + E L G +VT V G A++ L D D++ +
Sbjct: 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQ 62
Query: 1139 -MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMT--ADVIQASNEQCM 1195
DG+Q R + ++PI+ ++ A + ASN
Sbjct: 63 PPDGWQVARVAREI----------------------DPNMPIVYISGHAALEWASN---- 96
Query: 1196 KCGMDD--YVSKPFEDEQLYTAVAR 1218
G+ D + KPF QL TAV++
Sbjct: 97 --GVPDSIILEKPFTSAQLITAVSQ 119
|
| >3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans} Length = 249 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 38/163 (23%)
Query: 1061 ESSKKLQQKRKKPSLGHLLKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDK 1120
+ +G + + + ILV++D+ V L G +V D + K
Sbjct: 18 FEGSHMASMTGGQQMGRMNEQR-ILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIK 76
Query: 1121 LTPPHNFDACFMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPIL 1180
+ D +DL +P+ DG ++R ++S +PI+
Sbjct: 77 ARE-DHPDLILLDLGLPDFDGGDVVQRLR-------------KNS----------ALPII 112
Query: 1181 AMTA-----DVIQASNEQCMKCGMDDYVSKPFEDEQLYTAVAR 1218
+TA + ++ + G DDY+ KPF ++L +AR
Sbjct: 113 VLTARDTVEEKVRL-----LGLGADDYLIKPFHPDEL---LAR 147
|
| >3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis} Length = 250 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 4e-09
Identities = 35/133 (26%), Positives = 51/133 (38%), Gaps = 23/133 (17%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+LVVDD + +LK G V G A+D+ DA +D+ MP MDGF
Sbjct: 26 VLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE-TRPDAVILDVXMPGMDGFG 84
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
++R + P L +TA + G DDYV
Sbjct: 85 VLRRLRADGID----------------------APALFLTARDSLQDKIAGLTLGGDDYV 122
Query: 1204 SKPFEDEQLYTAV 1216
+KPF E++ +
Sbjct: 123 TKPFSLEEVVARL 135
|
| >2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A Length = 127 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 4e-09
Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 34/142 (23%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
++ILVV+D R + L+++G + +AV++L D + +P G
Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-PWPDLILLAWMLPGGSG 61
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMK 1196
Q +R +P++ +TA D ++ ++
Sbjct: 62 IQFIKHLRRESM--------------------TRDIPVVMLTARGEEEDRVRG-----LE 96
Query: 1197 CGMDDYVSKPFEDEQLYTAVAR 1218
G DD ++KPF ++L VAR
Sbjct: 97 TGADDCITKPFSPKEL---VAR 115
|
| >1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3 Length = 196 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 5e-09
Identities = 15/138 (10%), Positives = 33/138 (23%), Gaps = 28/138 (20%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L+ Q+LV++ L + G V A D F +
Sbjct: 10 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEA-----FDVPVDVVFTSIFQNR 64
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
A ++A+ A Q ++
Sbjct: 65 HHDEIAALLAAGTP-----------------------RTTLVALVEYESPAVLSQIIELE 101
Query: 1199 MDDYVSKPFEDEQLYTAV 1216
+++P + ++ +
Sbjct: 102 CHGVITQPLDAHRVLPVL 119
|
| >3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa} Length = 400 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 7/139 (5%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAI-VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+LV++D R VA ALKK + G+ AV L + D DLQM MDG
Sbjct: 6 VLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDLQMSGMDGL 65
Query: 1143 QATWQIRHLENEINEQIASG------ESSAEMFGNVGLWHVPILAMTADVIQASNEQCMK 1196
+ ++S +++ M +GL + L + + +
Sbjct: 66 AFLRHASLSGKVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRY 125
Query: 1197 CGMDDYVSKPFEDEQLYTA 1215
+ + E +L +
Sbjct: 126 NARRQDLPRQIEVAELPSV 144
|
| >3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B* Length = 145 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 8e-08
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIV---TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+++VDD + R +K + G+ A+DKL N D +D++MP MD
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAAN-GQEALDKLAAQPNVDLILLDIEMPVMD 74
Query: 1141 GFQATWQIR 1149
G + +
Sbjct: 75 GMEFLRHAK 83
|
| >1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A* Length = 225 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 8e-08
Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 38/141 (26%)
Query: 1084 ILVV-DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+LVV D+ + + E LKK V G + FD +D+ +P DG+
Sbjct: 5 VLVVEDERDLADLITEA-LKKEMFTVDVCYDGEEGMYMALN-EPFDVVILDIMLPVHDGW 62
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMKC 1197
+ +R SG + P+L +TA ++ +
Sbjct: 63 EILKSMR----------ESGV------------NTPVLMLTALSDVEYRVKG-----LNM 95
Query: 1198 GMDDYVSKPFEDEQLYTAVAR 1218
G DDY+ KPF+ +L +AR
Sbjct: 96 GADDYLPKPFDLREL---IAR 113
|
| >4fmt_A CHPT protein; A phosphotransfer protein, A two-component signaling pathway structural genomics, joint center for structural genomics; 2.30A {Caulobacter crescentus} Length = 228 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 2e-07
Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 7/76 (9%)
Query: 826 GRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRCLVELMGGEI 885
GR ++ + + E + + G + + LV GG+I
Sbjct: 158 GRFSIIADAKGPRARLRPEVLAGLKGEPLAEGLG------GPWVQAAYLNALVRAAGGQI 211
Query: 886 GFVSEPGTGSTFSFTV 901
+ + V
Sbjct: 212 AVEIGEDRA-SIAAWV 226
|
| >3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} Length = 136 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 37/143 (25%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC-FMDLQMPEM--D 1140
I +VD R L + C + + + + ++ + +
Sbjct: 9 IYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQIS--DDAIGMIIEAHLEDKKDS 66
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA--DV---IQASNEQCM 1195
G + L + ++ H+P + M + D+ ++A M
Sbjct: 67 GIE-------LLETLVKRGF---------------HLPTIVMASSSDIPTAVRA-----M 99
Query: 1196 KCGMDDYVSKPFEDEQLYTAVAR 1218
+ D++ KPF + L V +
Sbjct: 100 RASAADFIEKPFIEHVLVHDVQQ 122
|
| >2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae} Length = 143 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGA--IVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+++V+D + ++ + H IV D G + L + DA F+D+ +P +DG
Sbjct: 12 VIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH-NKVDAIFLDINIPSLDG 70
Query: 1142 FQATWQIRHLEN 1153
I +
Sbjct: 71 VLLAQNISQFAH 82
|
| >3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima} Length = 164 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIV---TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+LVVDD+ R V + + + D G AV+K D MD++MP ++
Sbjct: 28 VLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKD-GLEAVEKA-IELKPDVITMDIEMPNLN 85
Query: 1141 GFQATWQIR 1149
G +A I
Sbjct: 86 GIEALKLIM 94
|
| >2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} Length = 154 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 3e-06
Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCV--DCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+L+VDD+ + R A+ L+ + + + A+ L + D +D+ +P+ +
Sbjct: 6 VLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEA 65
Query: 1142 FQATWQIR 1149
+++
Sbjct: 66 IDGLVRLK 73
|
| >1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1 Length = 349 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 8e-06
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIV---TCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+L VDD+ + R++ + H + T D A D + N D +D++MP MD
Sbjct: 6 VLSVDDSALMRQIMTEIINSHSDMEMVATAPD-PLVARDLI-KKFNPDVLTLDVEMPRMD 63
Query: 1141 GFQATWQIR 1149
G ++
Sbjct: 64 GLDFLEKLM 72
|
| >2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A Length = 137 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 17/132 (12%), Positives = 44/132 (33%), Gaps = 39/132 (29%)
Query: 1084 ILVV-DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+L++ ++++ + +G L G + + + N+D M + + +
Sbjct: 21 VLLIEKNSVLGGEIEKG-LNVKGFMADVTESLEDGEYLMDI-RNYDLV-M---VSDKNAL 74
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMKC 1197
+I+ S + +L + + + A +
Sbjct: 75 SFVSRIK----------EKHSS------------IVVLVSSDNPTSEEEVHA-----FEQ 107
Query: 1198 GMDDYVSKPFED 1209
G DDY++KP+
Sbjct: 108 GADDYIAKPYRS 119
|
| >3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* Length = 225 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 8e-05
Identities = 7/70 (10%), Positives = 20/70 (28%), Gaps = 4/70 (5%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCV---DCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+ ++ D + R+ + AL+ + + + + +D D
Sbjct: 10 VRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEEN-KPESRSIQMLVIDYSRISDD 68
Query: 1141 GFQATWQIRH 1150
+H
Sbjct: 69 VLTDYSSFKH 78
|
| >2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori} Length = 223 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 43/142 (30%)
Query: 1084 ILVV-DDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+L++ ++++ + +G L G + + + N+D M + + +
Sbjct: 3 VLLIEKNSVLGGEIEKG-LNVKGFMADVTESLEDGEYLMDI-RNYDLV-M---VSDKNAL 56
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNEQCMKC 1197
+I+ + +L + + + A +
Sbjct: 57 SFVSRIK----------EKHS------------SIVVLVSSDNPTSEEEVHA-----FEQ 89
Query: 1198 GMDDYVSKPFED-EQLYTAVAR 1218
G DDY++KP+ + L VAR
Sbjct: 90 GADDYIAKPYRSIKAL---VAR 108
|
| >3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} Length = 141 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 28/143 (19%), Positives = 47/143 (32%), Gaps = 34/143 (23%)
Query: 1083 QILVVDDNMVNRRVAEGALKK------HG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQ 1135
+IL+VDD + R L + D G A+ H + D++
Sbjct: 4 RILIVDDEKLTRD----GLIANINWKALSFDQIDQADDGINAIQIALK-HPPNVLLTDVR 58
Query: 1136 MPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCM 1195
MP MDG + I L + + SG S + + +
Sbjct: 59 MPRMDGIELVDNILKLYPDCSVIFMSGYSD---KEYL-------------------KAAI 96
Query: 1196 KCGMDDYVSKPFEDEQLYTAVAR 1218
K YV KP + ++ A+ +
Sbjct: 97 KFRAIRYVEKPIDPSEIMDALKQ 119
|
| >4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A Length = 150 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 1114 GRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR 1149
G+ A+ L + D +D++MP G + IR
Sbjct: 55 GQEAIQ-LLEKESVDIAILDVEMPVKTGLEVLEWIR 89
|
| >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} Length = 153 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 33/83 (39%)
Query: 1084 ILVVDDNMVNRR--------------VAEGALKKHGAIVTCVDCGRAAVD---KLTPPHN 1126
I++VDD+ + R VAE A A + TP
Sbjct: 8 IMLVDDHPIVREGYRRLIERRPGYAVVAEAA------------DAGEAYRLYRETTP--- 52
Query: 1127 FDACFMDLQMPEMDGFQATWQIR 1149
D MDL +P G +AT IR
Sbjct: 53 -DIVVMDLTLPGPGGIEATRHIR 74
|
| >3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Length = 152 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 33/83 (39%)
Query: 1084 ILVVDDNMVNRR--------------VAEGALKKHGAIVTCVDCGRAAVD---KLTPPHN 1126
++V DD+ + R V E D G AA++ P
Sbjct: 18 VVVGDDHPLFREGVVRALSLSGSVNVVGEAD-----------D-GAAALELIKAHLP--- 62
Query: 1127 FDACFMDLQMPEMDGFQATWQIR 1149
D +D +MP MDG Q +R
Sbjct: 63 -DVALLDYRMPGMDGAQVAAAVR 84
|
| >3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus} Length = 133 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 3e-04
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 1114 GRAAVDKLTPPHNFDACFMDLQMPEMDGFQATWQIR 1149
G A+ L +N + +D++MP M G + +IR
Sbjct: 38 GLDAMK-LIEEYNPNVVILDIEMPGMTGLEVLAEIR 72
|
| >3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12} Length = 134 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 4e-04
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 26/79 (32%)
Query: 1084 ILVVDDNMVNRR-------------VAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDAC 1130
+++DD+ + +AE + G +AV D
Sbjct: 4 AIIIDDHPLAIAAIRNLLIKNDIEILAELT-----------E-GGSAVQ-RVETLKPDIV 50
Query: 1131 FMDLQMPEMDGFQATWQIR 1149
+D+ +P ++G Q +R
Sbjct: 51 IIDVDIPGVNGIQVLETLR 69
|
| >1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A* Length = 130 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 5e-04
Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 42/144 (29%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIV---TCVDCGRAAVD---KLTPPHNFDACFMDLQMP 1137
+ + DDN + + + + T + G+ + + P D +D+ MP
Sbjct: 5 VCIADDNRELVSLLDEYISSQPDMEVIGTAYN-GQDCLQMLEEKRP----DILLLDIIMP 59
Query: 1138 EMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTA-----DVIQASNE 1192
+DG E+I +G ++ +TA +A
Sbjct: 60 HLDGLAVL-----------ERIRAGFEHQ----------PNVIMLTAFGQEDVTKKA--- 95
Query: 1193 QCMKCGMDDYVSKPFEDEQLYTAV 1216
++ G ++ KPF+ E L +
Sbjct: 96 --VELGASYFILKPFDMENLAHHI 117
|
| >1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A Length = 215 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 8e-04
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 33/83 (39%)
Query: 1084 ILVVDDNMVNRR--------------VAEGALKKHGAIVTCVDCGRAAVD---KLTPPHN 1126
IL++DD+ + R V E + + G ++ L P
Sbjct: 8 ILLIDDHPMLRTGVKQLISMAPDITVVGEAS-----------N-GEQGIELAESLDP--- 52
Query: 1127 FDACFMDLQMPEMDGFQATWQIR 1149
D +DL MP M+G + ++R
Sbjct: 53 -DLILLDLNMPGMNGLETLDKLR 74
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1223 | ||||
| d2c2aa2 | 161 | d.122.1.3 (A:321-481) Sensor histidine kinase TM08 | 5e-32 | |
| d1jm6a2 | 190 | d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kin | 4e-26 | |
| d1dcfa_ | 134 | c.23.1.2 (A:) Receiver domain of the ethylene rece | 5e-26 | |
| d1dcfa_ | 134 | c.23.1.2 (A:) Receiver domain of the ethylene rece | 2e-08 | |
| d1ysra1 | 148 | d.122.1.3 (A:299-446) Sensor-type histidine kinase | 2e-25 | |
| d1bxda_ | 161 | d.122.1.3 (A:) Histidine kinase domain of the osmo | 7e-23 | |
| d2r25b1 | 128 | c.23.1.1 (B:1087-1214) Response regulator Sin1 {Ba | 7e-23 | |
| d2r25b1 | 128 | c.23.1.1 (B:1087-1214) Response regulator Sin1 {Ba | 0.003 | |
| d1u0sy_ | 118 | c.23.1.1 (Y:) CheY protein {Thermotoga maritima [T | 1e-21 | |
| d1jbea_ | 128 | c.23.1.1 (A:) CheY protein {Escherichia coli [TaxI | 3e-21 | |
| d1peya_ | 119 | c.23.1.1 (A:) Sporulation response regulator Spo0F | 3e-21 | |
| d1zesa1 | 121 | c.23.1.1 (A:3-123) PhoB receiver domain {Escherich | 8e-21 | |
| d1dz3a_ | 123 | c.23.1.1 (A:) Sporulation response regulator Spo0A | 1e-20 | |
| d1gkza2 | 193 | d.122.1.4 (A:186-378) Branched-chain alpha-ketoaci | 8e-20 | |
| d1p6qa_ | 129 | c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti | 3e-19 | |
| d1p6qa_ | 129 | c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti | 0.004 | |
| d1mb3a_ | 123 | c.23.1.1 (A:) Cell division response regulator Div | 4e-19 | |
| d1mb3a_ | 123 | c.23.1.1 (A:) Cell division response regulator Div | 2e-04 | |
| d1a2oa1 | 140 | c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal | 4e-19 | |
| d2a9pa1 | 117 | c.23.1.1 (A:2-118) DNA-binding response regulator | 5e-19 | |
| d2a9pa1 | 117 | c.23.1.1 (A:2-118) DNA-binding response regulator | 0.003 | |
| d1r62a_ | 156 | d.122.1.3 (A:) Nitrogen regulation protein NtrB, C | 7e-19 | |
| d1k68a_ | 140 | c.23.1.1 (A:) Response regulator for cyanobacteria | 7e-19 | |
| d1k68a_ | 140 | c.23.1.1 (A:) Response regulator for cyanobacteria | 1e-04 | |
| d1id0a_ | 146 | d.122.1.3 (A:) Histidine kinase PhoQ domain {Esche | 8e-19 | |
| d1i3ca_ | 144 | c.23.1.1 (A:) Response regulator for cyanobacteria | 1e-18 | |
| d1i3ca_ | 144 | c.23.1.1 (A:) Response regulator for cyanobacteria | 2e-05 | |
| d2ayxa1 | 133 | c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C | 1e-18 | |
| d2ayxa1 | 133 | c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C | 2e-04 | |
| d1a04a2 | 138 | c.23.1.1 (A:5-142) Nitrate/nitrite response regula | 4e-18 | |
| d2b4aa1 | 118 | c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Ba | 2e-17 | |
| d2b4aa1 | 118 | c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Ba | 0.003 | |
| d1zgza1 | 120 | c.23.1.1 (A:2-121) TorCAD operon transcriptional r | 2e-17 | |
| d1yioa2 | 128 | c.23.1.1 (A:3-130) Response regulatory protein Sty | 1e-16 | |
| d1zh2a1 | 119 | c.23.1.1 (A:2-120) Transcriptional regulatory prot | 2e-16 | |
| d1mvoa_ | 121 | c.23.1.1 (A:) PhoP receiver domain {Bacillus subti | 8e-16 | |
| d1qkka_ | 140 | c.23.1.1 (A:) Transcriptional regulatory protein D | 8e-16 | |
| d1ys7a2 | 121 | c.23.1.1 (A:7-127) Transcriptional regulatory prot | 1e-15 | |
| d1krwa_ | 123 | c.23.1.1 (A:) NTRC receiver domain {Salmonella typ | 2e-15 | |
| d1xhfa1 | 121 | c.23.1.1 (A:2-122) Aerobic respiration control pro | 2e-15 | |
| d1ny5a1 | 137 | c.23.1.1 (A:1-137) Transcriptional activator sigm5 | 2e-15 | |
| d1dbwa_ | 123 | c.23.1.1 (A:) Transcriptional regulatory protein F | 2e-15 | |
| d1k66a_ | 149 | c.23.1.1 (A:) Response regulator for cyanobacteria | 2e-15 | |
| d1k66a_ | 149 | c.23.1.1 (A:) Response regulator for cyanobacteria | 0.001 | |
| d1p2fa2 | 120 | c.23.1.1 (A:1-120) Response regulator DrrB {Thermo | 3e-15 | |
| d1kgsa2 | 122 | c.23.1.1 (A:2-123) PhoB receiver domain {Thermotog | 4e-15 | |
| d1s8na_ | 190 | c.23.1.1 (A:) Probable two-component system transc | 1e-14 | |
| d2pl1a1 | 119 | c.23.1.1 (A:1-119) PhoP receiver domain {Escherich | 2e-14 | |
| d1w25a2 | 153 | c.23.1.1 (A:141-293) Response regulator PleD, rece | 3e-14 | |
| d1w25a1 | 139 | c.23.1.1 (A:2-140) Response regulator PleD, receiv | 2e-13 | |
| d2c2aa1 | 89 | a.30.2.1 (A:232-320) Sensor histidine kinase TM085 | 7e-12 | |
| d1qo0d_ | 189 | c.23.1.3 (D:) Positive regulator of the amidase op | 2e-11 | |
| d1i58a_ | 189 | d.122.1.3 (A:) Histidine kinase CheA {Thermotoga m | 2e-11 | |
| d2hkja3 | 219 | d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A | 5e-11 | |
| d1joya_ | 67 | a.30.2.1 (A:) EnvZ histidine kinase {Escherichia c | 2e-09 | |
| d1th8a_ | 139 | d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus | 2e-04 | |
| d1y8oa2 | 125 | d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinas | 0.001 |
| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Sensor histidine kinase TM0853 species: Thermotoga maritima [TaxId: 2336]
Score = 120 bits (302), Expect = 5e-32
Identities = 42/214 (19%), Positives = 75/214 (35%), Gaps = 59/214 (27%)
Query: 687 RLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLV 746
++ E L D++++ ++ A+ + + + P DP R RQ++ NL+
Sbjct: 1 QINRE--KVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLL 58
Query: 747 GNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDR 806
N +K+++ + D+ V + V + G P +
Sbjct: 59 NNGVKYSKKDAPDKYVKVILDEKDGGVLI-----------------IVEDNGIGIPDHAK 101
Query: 807 WKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGG 866
+ +E F + DSS + G
Sbjct: 102 DRIFE----------------------------------------QFYRVDSSLTYEVPG 121
Query: 867 TGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
TG+GL+I++ +VEL GG I SE G GS F
Sbjct: 122 TGLGLAITKEIVELHGGRIWVESEVGKGSRFFVW 155
|
| >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: alpha-ketoacid dehydrogenase kinase, C-terminal domain domain: Pyruvate dehydrogenase kinase species: Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]
Score = 104 bits (261), Expect = 4e-26
Identities = 30/212 (14%), Positives = 58/212 (27%), Gaps = 61/212 (28%)
Query: 697 LHDVLDNVLSL---FSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFT 753
+ D D L + + I+ + P ++ P ++ L N+++ T
Sbjct: 17 VKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHLYHMLFELFKNAMRAT 76
Query: 754 QDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENF 813
+ +++ + + V + +
Sbjct: 77 VESHESSLTL-------PPIKIM---------------------------VALGEEDLSI 102
Query: 814 KMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSR-----TYGGTG 868
KM D G G+PL R+F+ + G G
Sbjct: 103 KMSDR-------------------GGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFG 143
Query: 869 IGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
GL ISR + G++ S G G+
Sbjct: 144 YGLPISRLYAKYFQGDLQLFSMEGFGTDAVIY 175
|
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Receiver domain of the ethylene receptor domain: Receiver domain of the ethylene receptor species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 102 bits (255), Expect = 5e-26
Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 19/141 (13%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
G ++LV+D+N V+R V +G L G VT V + ++ H FMD+ MP
Sbjct: 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS--HEHKVVFMDVCMPG 62
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
++ +Q +I E F ++A++ + +++ E+CM G
Sbjct: 63 VENYQIALRIH-----------------EKFTKQRHQRPLLVALSGNTDKSTKEKCMSFG 105
Query: 1199 MDDYVSKPFEDEQLYTAVARF 1219
+D + KP + + ++
Sbjct: 106 LDGVLLKPVSLDNIRDVLSDL 126
|
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Receiver domain of the ethylene receptor domain: Receiver domain of the ethylene receptor species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 51.5 bits (123), Expect = 2e-08
Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 13/137 (9%)
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
+S F GL+ LV+D+ + VT+ L L V +S + +S ++
Sbjct: 2 MSNFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE------HKVVF 55
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVT 1041
+ + + +Y + + + + P + L+ + ++ +++ S G+
Sbjct: 56 MDVCMPGVE-------NYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDG 108
Query: 1042 LLTKPLRLSVLIGCFQE 1058
+L KP+ L + +
Sbjct: 109 VLLKPVSLDNIRDVLSD 125
|
| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 148 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Sensor-type histidine kinase PrrB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 101 bits (252), Expect = 2e-25
Identities = 28/210 (13%), Positives = 59/210 (28%), Gaps = 68/210 (32%)
Query: 691 EFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSI 750
+ VP + D+LD + + L +++G P R + N + N++
Sbjct: 2 DHVPVDITDLLDRAAHDAARIYPDLDVSLVP----SPTCIIVGLPAGLRLAVDNAIANAV 57
Query: 751 KFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSW 810
K + +S + ++ + D SG P
Sbjct: 58 KH-GGATLVQLSAV-SSRAGVEIAIDD-------------------NGSGVP-------- 88
Query: 811 ENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIG 870
+ + F F + + ++ G+G+G
Sbjct: 89 -----------EGERQVV---------------------FERFSRGS---TASHSGSGLG 113
Query: 871 LSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
L++ +L GG + P G+
Sbjct: 114 LALVAQQAQLHGGTASLENSPLGGARLVLR 143
|
| >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Histidine kinase domain of the osmosensor EnvZ species: Escherichia coli [TaxId: 562]
Score = 94.2 bits (234), Expect = 7e-23
Identities = 38/216 (17%), Positives = 67/216 (31%), Gaps = 70/216 (32%)
Query: 685 SGRLEPEFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITN 744
+G+ E L+ VL V++ S + L V P ++ + N
Sbjct: 1 TGQ-EMPMEMADLNAVLGEVIAAESGYEREIETAL-----YPGSIEVKMHPLSIKRAVAN 54
Query: 745 LVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVV 804
+V N+ ++ G I VS + R+ V+D G
Sbjct: 55 MVVNAARYG--NGWIKVSSGTEPN-RAWFQVED-------------------DGPGIA-- 90
Query: 805 DRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTY 864
EQ + F PF++ D ++RT
Sbjct: 91 -----------------PEQRKHL---------------------FQPFVRGD--SARTI 110
Query: 865 GGTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
GTG+GL+I + +V+ G + + G +
Sbjct: 111 SGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAW 146
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 93.1 bits (231), Expect = 7e-23
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 26/141 (18%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKL----TPPHNFDACFMDLQMPE 1138
ILVV+DN VN+ V + L G + G+ A DK+ + N++ FMD+QMP+
Sbjct: 4 ILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPK 63
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
+DG +T IR + PI+A+TA ++ ++C++ G
Sbjct: 64 VDGLLSTKMIRRDLG---------------------YTSPIVALTAFADDSNIKECLESG 102
Query: 1199 MDDYVSKPFEDEQLYTAVARF 1219
M+ ++SKP + +L T + F
Sbjct: 103 MNGFLSKPIKRPKLKTILTEF 123
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.9 bits (85), Expect = 0.003
Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 14/132 (10%)
Query: 929 RALVIDDKSIRAEVTRYHLQRLEMA-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDKD 987
+ LV++D + EV + L + + +A Q A + + S + + D
Sbjct: 3 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFM----D 58
Query: 988 VWDKEI-GLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKP 1046
V ++ GL+ M+++ ++ P + L A + +++ E G+ L+KP
Sbjct: 59 VQMPKVDGLLSTKMIRR-------DLGYTSPIVALTAFA-DDSNIKECLESGMNGFLSKP 110
Query: 1047 LRLSVLIGCFQE 1058
++ L E
Sbjct: 111 IKRPKLKTILTE 122
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} Length = 118 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Score = 89.2 bits (221), Expect = 1e-21
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 24/139 (17%)
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
GK++L+VDD R + + + K G + GR AV+K D MD+ MPEM
Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYK-ELKPDIVTMDITMPEM 59
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
+G A +I ++ + I+ +A QA + +K G
Sbjct: 60 NGIDAIKEIMKIDP----------------------NAKIIVCSAMGQQAMVIEAIKAGA 97
Query: 1200 DDYVSKPFEDEQLYTAVAR 1218
D++ KPF+ ++ A+ +
Sbjct: 98 KDFIVKPFQPSRVVEALNK 116
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Score = 88.1 bits (218), Expect = 3e-21
Identities = 27/138 (19%), Positives = 58/138 (42%), Gaps = 23/138 (16%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
++IL+VDD R + K G G A+D +T D +D+++P MDG
Sbjct: 2 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK-ERPDLVLLDMKIPGMDG 60
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ +++ ++ ++ ++ MTA ++ + G
Sbjct: 61 IEILKRMKVIDE----------------------NIRVIIMTAYGELDMIQESKELGALT 98
Query: 1202 YVSKPFEDEQLYTAVARF 1219
+ +KPF+ +++ AV ++
Sbjct: 99 HFAKPFDIDEIRDAVKKY 116
|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Escherichia coli [TaxId: 562]
Score = 86.9 bits (215), Expect = 8e-21
Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 21/137 (15%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
++ILVV+D R + L+++G + +AV++L D +D +P G
Sbjct: 1 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-PWPDLILLDWMLPGGSG 59
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
Q ++ +P++ +TA + + ++ G DD
Sbjct: 60 IQFIKHLKRESM--------------------TRDIPVVMLTARGEEEDRVRGLETGADD 99
Query: 1202 YVSKPFEDEQLYTAVAR 1218
Y++KPF ++L +
Sbjct: 100 YITKPFSPKELVARIKA 116
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Score = 86.8 bits (215), Expect = 1e-20
Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 24/137 (17%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAI--VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+ + DDN + + + + + G+ + L D +D+ MP +DG
Sbjct: 4 VCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE-KRPDILLLDIIMPHLDG 62
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+IR ++ +TA + ++ ++ G
Sbjct: 63 LAVLERIRAGFEH---------------------QPNVIMLTAFGQEDVTKKAVELGASY 101
Query: 1202 YVSKPFEDEQLYTAVAR 1218
++ KPF+ E L + +
Sbjct: 102 FILKPFDMENLAHHIRQ 118
|
| >d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: alpha-ketoacid dehydrogenase kinase, C-terminal domain domain: Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 86.5 bits (213), Expect = 8e-20
Identities = 27/205 (13%), Positives = 58/205 (28%), Gaps = 33/205 (16%)
Query: 697 LHDVLDNVLSLFSSKANQK-GIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQD 755
+++ + K G + ++ V P I+ L+ N+++
Sbjct: 12 PKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRA-TM 70
Query: 756 KGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKM 815
+ H+ ++ D V + + ++ ++ + G D + +
Sbjct: 71 ESHLDTPYNVPDVVITIANNDVDLII-----------RISDRGGGIAHKDLDRVMDYHFT 119
Query: 816 LDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISR 875
+T + +F S G G GL SR
Sbjct: 120 TAEASTQDPRI--------------------SPLFGHLDMHSGGQSGPMHGFGFGLPTSR 159
Query: 876 CLVELMGGEIGFVSEPGTGSTFSFT 900
E +GG + S G G+
Sbjct: 160 AYAEYLGGSLQLQSLQGIGTDVYLR 184
|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} Length = 129 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Sinorhizobium meliloti, CheY2 [TaxId: 382]
Score = 82.7 bits (204), Expect = 3e-19
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 22/138 (15%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
+L+VDD + +R + AL++ G +T G + + + D MP+MDG
Sbjct: 9 VLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ-NPHHLVISDFNMPKMDGL 67
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
+R + +TA +A ++ G ++
Sbjct: 68 GLLQAVRANPAT--------------------KKAAFIILTAQGDRALVQKAAALGANNV 107
Query: 1203 VSKPFEDEQLYTAVARFF 1220
++KPF E++ A+ F
Sbjct: 108 LAKPFTIEKMKAAIEAVF 125
|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} Length = 129 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Sinorhizobium meliloti, CheY2 [TaxId: 382]
Score = 36.5 bits (84), Expect = 0.004
Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 16/127 (12%)
Query: 928 LRALVIDDKSIRAEVTRYHLQRLEMA-VHVANSMQLACSYLSDTCSTSVLPQLALVLIDK 986
++ L++DD+ + LQ+L + A + ++ L + +
Sbjct: 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNP-----HHLVISDFNM 61
Query: 987 DVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKP 1046
D GL L ++ ++ I L A + + G +L KP
Sbjct: 62 PKMD---GLGLLQAVRAN------PATKKAAFIILTAQG-DRALVQKAAALGANNVLAKP 111
Query: 1047 LRLSVLI 1053
+ +
Sbjct: 112 FTIEKMK 118
|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Cell division response regulator DivK species: Caulobacter crescentus [TaxId: 155892]
Score = 82.4 bits (203), Expect = 4e-19
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 21/137 (15%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K++L+V+DN +N ++ L+ G G +A+ + D MD+Q+PE+ G
Sbjct: 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE-NKPDLILMDIQLPEISG 60
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ T ++ ++ L H+P++A+TA ++ E+ + G +
Sbjct: 61 LEVTKWLKEDDD--------------------LAHIPVVAVTAFAMKGDEERIREGGCEA 100
Query: 1202 YVSKPFEDEQLYTAVAR 1218
Y+SKP + R
Sbjct: 101 YISKPISVVHFLETIKR 117
|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Cell division response regulator DivK species: Caulobacter crescentus [TaxId: 155892]
Score = 40.4 bits (94), Expect = 2e-04
Identities = 15/125 (12%), Positives = 43/125 (34%), Gaps = 15/125 (12%)
Query: 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV 988
+ L+++D + ++ L+ A S + + +
Sbjct: 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLI--------LMDIQ 54
Query: 989 WDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLR 1048
+ GL + LK+ ++P + + A ++ D + ++ G ++KP+
Sbjct: 55 LPEISGLEVTKWLKEDDD------LAHIPVVAVTAFAMKG-DEERIREGGCEAYISKPIS 107
Query: 1049 LSVLI 1053
+ +
Sbjct: 108 VVHFL 112
|
| >d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Methylesterase CheB, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 82.7 bits (204), Expect = 4e-19
Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 25/138 (18%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAI--VTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+L VDD+ + R++ + H + V A D + N D +D++MP MDG
Sbjct: 6 VLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK-FNPDVLTLDVEMPRMDG 64
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
++ L V + ++T + + + ++ G D
Sbjct: 65 LDFLEKLMRLRPM--------------------PVVMVSSLTGKGSEVT-LRALELGAID 103
Query: 1202 YVSKPFED-EQLYTAVAR 1218
+V+KP + A +
Sbjct: 104 FVTKPQLGIREGMLAYSE 121
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 82.0 bits (202), Expect = 5e-19
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 24/137 (17%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K+IL+VDD + + + K G V GR A+++ D +DL +PE+DG
Sbjct: 1 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA-EQPDIIILDLMLPEIDG 59
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ IR VPIL ++A + ++ G DD
Sbjct: 60 LEVAKTIRKT-----------------------SSVPILMLSAKDSEFDKVIGLELGADD 96
Query: 1202 YVSKPFEDEQLYTAVAR 1218
YV+KPF + +L V
Sbjct: 97 YVTKPFSNRELQARVKA 113
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 36.5 bits (84), Expect = 0.003
Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 18/125 (14%)
Query: 929 RALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDKDV 988
+ L++DD+ +++ ++++ + V A + + A + I +
Sbjct: 2 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDII--------ILDLM 53
Query: 989 WDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKPLR 1048
+ GL + +++ ++P + L A SE D+ G +TKP
Sbjct: 54 LPEIDGLEVAKTIRKT---------SSVPILMLSAKD-SEFDKVIGLELGADDYVTKPFS 103
Query: 1049 LSVLI 1053
L
Sbjct: 104 NRELQ 108
|
| >d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Nitrogen regulation protein NtrB, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 82.6 bits (203), Expect = 7e-19
Identities = 45/208 (21%), Positives = 73/208 (35%), Gaps = 58/208 (27%)
Query: 693 VPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKF 752
V +H V + V++L S + + L +PE+ DP + Q++ N+V N+++
Sbjct: 2 VTESIHKVAERVVTLVSMEL-PDNVRLIRDYDPSLPELA-HDPDQIEQVLLNIVRNALQA 59
Query: 753 TQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWEN 812
+G
Sbjct: 60 LGPEGGEI-------------------------------------------------ILR 70
Query: 813 FKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLS 872
+ + R+ + VED G GIP Q +F P + GGTG+GLS
Sbjct: 71 TRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE------GGTGLGLS 124
Query: 873 ISRCLVELMGGEIGFVSEPGTGSTFSFT 900
I+R L++ G+I F S PG + FS
Sbjct: 125 IARNLIDQHSGKIEFTSWPG-HTEFSVY 151
|
| >d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]
Score = 82.0 bits (202), Expect = 7e-19
Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 31/153 (20%)
Query: 1081 GKQILVVDDNMVNRRVAEGALKKHGAI--VTCVDCGRAAVDKL------TPPHNFDACFM 1132
K+I +V+DN + R+ + AL V V G A+ L D +
Sbjct: 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILL 61
Query: 1133 DLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNE 1192
DL +P+ DG + +I+ L +P++ ++ + +
Sbjct: 62 DLNLPKKDGREVLAEIKSDPT--------------------LKRIPVVVLSTSINEDDIF 101
Query: 1193 QCMKCGMDDYVSKPFEDEQLYT---AVARFFMS 1222
++ Y++K QL+ + F++S
Sbjct: 102 HSYDLHVNCYITKSANLSQLFQIVKGIEEFWLS 134
|
| >d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]
Score = 41.2 bits (96), Expect = 1e-04
Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 10/127 (7%)
Query: 929 RALVIDDKSIRAEVTRYHLQRLEMA--VHVANSMQLACSYLSDTCSTSVLPQLALVLIDK 986
+ +++D + + L + V A +YL + + L+L+D
Sbjct: 4 KIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLD- 62
Query: 987 DVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTKP 1046
K+ G + +K + +P + L + +E D + +TK
Sbjct: 63 LNLPKKDGREVLAEIKSDPT------LKRIPVVVLSTSI-NEDDIFHSYDLHVNCYITKS 115
Query: 1047 LRLSVLI 1053
LS L
Sbjct: 116 ANLSQLF 122
|
| >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Histidine kinase PhoQ domain species: Escherichia coli [TaxId: 562]
Score = 82.2 bits (203), Expect = 8e-19
Identities = 29/210 (13%), Positives = 66/210 (31%), Gaps = 70/210 (33%)
Query: 691 EFVPFHLHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSI 750
E P + +LDN+ S + +KG+ +++ +S + +G+ F +++ N++ N+
Sbjct: 2 ELHP--VAPLLDNLTSALNKVYQRKGVNISLDISPEIS--FVGEQNDFVEVMGNVLDNAC 57
Query: 751 KFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSW 810
K+ + I + + V+ + G P+ R +
Sbjct: 58 KYCLEFVEISARQT-DEHLYIVVE---------------------DDGPGIPLSKREVIF 95
Query: 811 ENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIG 870
+ + +D G G+ G
Sbjct: 96 DRGQRVDTLR----------------PGQGV----------------------------G 111
Query: 871 LSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
L+++R + E G+I G+
Sbjct: 112 LAVAREITEQYEGKIVAGESMLGGARMEVI 141
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Score = 82.1 bits (202), Expect = 1e-18
Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 28/145 (19%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAI--VTCVDCGRAAVDKLT------PPHNFDACFMD 1133
K IL+V+D+ + R+ + LK + + G AA+ L + +D
Sbjct: 4 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLD 63
Query: 1134 LQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQ 1193
L +P+ DG + +I+ + L +P++ +T +
Sbjct: 64 LNLPKKDGREVLAEIKQNPD--------------------LKRIPVVVLTTSHNEDDVIA 103
Query: 1194 CMKCGMDDYVSKPFEDEQLYTAVAR 1218
+ ++ Y++K + L+ V
Sbjct: 104 SYELHVNCYLTKSRNLKDLFKMVQG 128
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Score = 43.9 bits (103), Expect = 2e-05
Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 14/129 (10%)
Query: 929 RALVIDDKSIRAEVTRYHLQR--LEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLIDK 986
L+++D + + + L+ ++ + + A ++L P+ L+L+D
Sbjct: 5 VILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLD- 63
Query: 987 DVWDKEIGLVLHYMLKQ--QRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLT 1044
L L + + +P + L + +E D + LT
Sbjct: 64 --------LNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSH-NEDDVIASYELHVNCYLT 114
Query: 1045 KPLRLSVLI 1053
K L L
Sbjct: 115 KSRNLKDLF 123
|
| >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sensor kinase protein RcsC, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 81.3 bits (200), Expect = 1e-18
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 23/136 (16%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
ILVVDD+ +NRR+ L G + G A++ + ++ D D+ MP MDG++
Sbjct: 11 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALN-VLSKNHIDIVLSDVNMPNMDGYR 69
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
T +IR L +P++ +TA+ + ++C++ GMD +
Sbjct: 70 LTQRIRQLG----------------------LTLPVIGVTANALAEEKQRCLESGMDSCL 107
Query: 1204 SKPFEDEQLYTAVARF 1219
SKP + + + +
Sbjct: 108 SKPVTLDVIKQTLTLY 123
|
| >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sensor kinase protein RcsC, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 40.1 bits (93), Expect = 2e-04
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 17/132 (12%)
Query: 922 VSEFRGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLAL 981
VS+ + LV+DD I + L L AN A + LS VL +
Sbjct: 3 VSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVL--SDV 60
Query: 982 VLIDKDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVT 1041
+ + D + + ++ R+ + + + ++ G+ +
Sbjct: 61 NMPNMDGY---------RLTQRIRQL------GLTLPVIGVTANALAEEKQRCLESGMDS 105
Query: 1042 LLTKPLRLSVLI 1053
L+KP+ L V+
Sbjct: 106 CLSKPVTLDVIK 117
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Score = 79.9 bits (197), Expect = 4e-18
Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 25/137 (18%)
Query: 1084 ILVVDDNMVNRRVAEGALKK--HGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
IL++DD+ + R + + +V G ++ + D +DL MP M+G
Sbjct: 5 ILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES-LDPDLILLDLNMPGMNG 63
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ ++R + + +++ +K G D
Sbjct: 64 LETLDKLREKSLS--------------------GRIVVFSVSNHEEDV--VTALKRGADG 101
Query: 1202 YVSKPFEDEQLYTAVAR 1218
Y+ K E E L A+ +
Sbjct: 102 YLLKDMEPEDLLKALHQ 118
|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} Length = 118 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Hypothetical protein BH3024 species: Bacillus halodurans [TaxId: 86665]
Score = 77.2 bits (190), Expect = 2e-17
Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 25/136 (18%)
Query: 1083 QILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGF 1142
++ +V+D + + + L + GA VT G A + D + Q+ ++ F
Sbjct: 4 RVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIF 63
Query: 1143 QATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDY 1202
++ +L +T + + + + Y
Sbjct: 64 SLLDIVKEQTK----------------------QPSVLILTTGRHEL--IESSEHNL-SY 98
Query: 1203 VSKPFEDEQLYTAVAR 1218
+ KPF +L A+
Sbjct: 99 LQKPFAISELRAAIDY 114
|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} Length = 118 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Hypothetical protein BH3024 species: Bacillus halodurans [TaxId: 86665]
Score = 36.8 bits (85), Expect = 0.003
Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 19/128 (14%)
Query: 926 RGLRALVIDDKSIRAEVTRYHLQRLEMAVHVANSMQLACSYLSDTCSTSVLPQLALVLID 985
+ R +++D+ A + +YHL +L V V S + S L+++
Sbjct: 1 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQL------STCDLLIVS 54
Query: 986 KDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTK 1045
+ L + +L + + + + L + E ++ L K
Sbjct: 55 DQ----LVDLSIFSLLDIVKEQT-----KQPSVLILTT---GRHELIESSEHN-LSYLQK 101
Query: 1046 PLRLSVLI 1053
P +S L
Sbjct: 102 PFAISELR 109
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 77.0 bits (189), Expect = 2e-17
Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 24/135 (17%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
I++V+D V + + + G V+ G + + + D +D+ +P+ +G
Sbjct: 4 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN-QSVDLILLDINLPDENGLM 62
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
T +R V I+ +T + ++ G DDYV
Sbjct: 63 LTRALRER-----------------------STVGIILVTGRSDRIDRIVGLEMGADDYV 99
Query: 1204 SKPFEDEQLYTAVAR 1218
+KP E +L V
Sbjct: 100 TKPLELRELVVRVKN 114
|
| >d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulatory protein StyR, N-terminal domain species: Pseudomonas fluorescens [TaxId: 294]
Score = 75.5 bits (185), Expect = 1e-16
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 23/135 (17%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+ VVDD+M R L+ G V DC ++ P +D++MP M G +
Sbjct: 5 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP-EQHGCLVLDMRMPGMSGIE 63
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
Q+ + + +PI+ +TA + MK G +++
Sbjct: 64 LQEQLTAISD----------------------GIPIVFITAHGDIPMTVRAMKAGAIEFL 101
Query: 1204 SKPFEDEQLYTAVAR 1218
KPFE++ L A+ +
Sbjct: 102 PKPFEEQALLDAIEQ 116
|
| >d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein KdpE, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 74.4 bits (182), Expect = 2e-16
Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 24/135 (17%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+L+V+D RR AL+ G V + + + + D +DL +P+ DG +
Sbjct: 3 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT-RKPDLIILDLGLPDGDGIE 61
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
+R VP++ ++A ++ + G DDY+
Sbjct: 62 FIRDLRQW-----------------------SAVPVIVLSARSEESDKIAALDAGADDYL 98
Query: 1204 SKPFEDEQLYTAVAR 1218
SKPF +L +
Sbjct: 99 SKPFGIGELQARLRV 113
|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Bacillus subtilis [TaxId: 1423]
Score = 72.8 bits (178), Expect = 8e-16
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 23/137 (16%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
K+ILVVDD + + L++ G V G A+ K D +D+ +P++DG
Sbjct: 3 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKK-AETEKPDLIVLDVMLPKLDG 61
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
+ Q+R + PIL +TA + ++ G DD
Sbjct: 62 IEVCKQLRQQKL----------------------MFPILMLTAKDEEFDKVLGLELGADD 99
Query: 1202 YVSKPFEDEQLYTAVAR 1218
Y++KPF ++ V
Sbjct: 100 YMTKPFSPREVNARVKA 116
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Score = 73.2 bits (179), Expect = 8e-16
Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 23/135 (17%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+ ++DD+ R+ + L+ G V+ A+ L+ D++MP MDG
Sbjct: 3 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA-DFAGIVISDIRMPGMDGLA 61
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
+I L+ +P++ +T Q ++ G D++
Sbjct: 62 LFRKILALDP----------------------DLPMILVTGHGDIPMAVQAIQDGAYDFI 99
Query: 1204 SKPFEDEQLYTAVAR 1218
+KPF ++L + R
Sbjct: 100 AKPFAADRLVQSARR 114
|
| >d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein PrrA, N-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 72.4 bits (177), Expect = 1e-15
Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 23/135 (17%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+LVVDD+ E L+ G V G A+ T + DA +D+ MP +DG
Sbjct: 4 VLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE-NRPDAIVLDINMPVLDGVS 62
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
+R ++N VP+ ++A ++ G DDY+
Sbjct: 63 VVTALRAMDN----------------------DVPVCVLSARSSVDDRVAGLEAGADDYL 100
Query: 1204 SKPFEDEQLYTAVAR 1218
KPF +L V
Sbjct: 101 VKPFVLAELVARVKA 115
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Score = 72.1 bits (176), Expect = 2e-15
Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 24/139 (17%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
+G + VVDD+ R V E AL G T + G + L D D++MP M
Sbjct: 3 RGI-VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS-KTPDVLLSDIRMPGM 60
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG QI+ +P++ MTA + + G
Sbjct: 61 DGLALLKQIKQRH----------------------PMLPVIIMTAHSDLDAAVSAYQQGA 98
Query: 1200 DDYVSKPFEDEQLYTAVAR 1218
DY+ KPF+ ++ V R
Sbjct: 99 FDYLPKPFDIDEAVALVER 117
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 71.6 bits (175), Expect = 2e-15
Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 24/135 (17%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
IL+V+D +V R + + G V G L+ ++ + MD+ +P +G
Sbjct: 5 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE-YDINLVIMDINLPGKNGLL 63
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
++R +V ++ +T + ++ G DDY+
Sbjct: 64 LARELREQ-----------------------ANVALMFLTGRDNEVDKILGLEIGADDYI 100
Query: 1204 SKPFEDEQLYTAVAR 1218
+KPF +L
Sbjct: 101 TKPFNPRELTIRARN 115
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Score = 72.4 bits (177), Expect = 2e-15
Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 23/135 (17%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+LV++D+ V R + E L G V + G+ A L +F+ +DL +P+++G +
Sbjct: 3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYK-LLSEKHFNVVLLDLLLPDVNGLE 61
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
I+ ++ +T + + MK G D++
Sbjct: 62 ILKWIKERSP----------------------ETEVIVITGHGTIKTAVEAMKMGAYDFL 99
Query: 1204 SKPFEDEQLYTAVAR 1218
+KP E++ + +
Sbjct: 100 TKPCMLEEIELTINK 114
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Score = 71.6 bits (175), Expect = 2e-15
Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 23/139 (16%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
+ + +VDD R+ L +G V A + P DL+MP+M
Sbjct: 2 QDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFA-PDVRNGVLVTDLRMPDM 60
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
G + + L+ ++P + +T + MK G
Sbjct: 61 SGVELLRNLGDLK----------------------INIPSIVITGHGDVPMAVEAMKAGA 98
Query: 1200 DDYVSKPFEDEQLYTAVAR 1218
D++ KPFED + A+ R
Sbjct: 99 VDFIEKPFEDTVIIEAIER 117
|
| >d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} Length = 149 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]
Score = 72.5 bits (177), Expect = 2e-15
Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 31/149 (20%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDC-----------GRAAVDKLTPPHNFDAC 1130
+ +LVV+D+ + + L++ G + C +
Sbjct: 7 QPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVI 66
Query: 1131 FMDLQMPEMDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQAS 1190
+DL +P DG + +I+ E L +P++ MT
Sbjct: 67 LLDLNLPGTDGREVLQEIKQDEV--------------------LKKIPVVIMTTSSNPKD 106
Query: 1191 NEQCMKCGMDDYVSKPFEDEQLYTAVARF 1219
E C + Y+ KP E ++L V F
Sbjct: 107 IEICYSYSISSYIVKPLEIDRLTETVQTF 135
|
| >d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} Length = 149 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]
Score = 38.6 bits (89), Expect = 0.001
Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 13/128 (10%)
Query: 931 LVIDDKSIRAEVTRYHLQRLEMAVHV-----ANSMQLACSYLSDTCSTSVLPQLALVLID 985
LV++D + LQR + + + C+ + P+ A++L+D
Sbjct: 10 LVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLD 69
Query: 986 KDVWDKEIGLVLHYMLKQQRRKGGLEISRNLPKIFLLATSISETDRDELKSDGIVTLLTK 1045
G + +KQ E+ + +P + + +S + D + S I + + K
Sbjct: 70 -LNLPGTDGREVLQEIKQD------EVLKKIPVVIMTTSS-NPKDIEICYSYSISSYIVK 121
Query: 1046 PLRLSVLI 1053
PL + L
Sbjct: 122 PLEIDRLT 129
|
| >d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator DrrB species: Thermotoga maritima [TaxId: 2336]
Score = 70.8 bits (173), Expect = 3e-15
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 26/138 (18%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDG 1141
+I VVDD+ + L++ G + T + G ++ F +D+ +P+ G
Sbjct: 3 WKIAVVDDDKNILKKVSEKLQQLGRVKTFLT-GEDFLNDE---EAFHVVVLDVMLPDYSG 58
Query: 1142 FQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDD 1201
++ I+ ++ +T S + + G DD
Sbjct: 59 YEICRMIKETR----------------------PETWVILLTLLSDDESVLKGFEAGADD 96
Query: 1202 YVSKPFEDEQLYTAVARF 1219
YV+KPF E L V RF
Sbjct: 97 YVTKPFNPEILLARVKRF 114
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Score = 70.9 bits (173), Expect = 4e-15
Identities = 30/135 (22%), Positives = 48/135 (35%), Gaps = 23/135 (17%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+LVV+D + ALKK V G + FD +D+ +P DG++
Sbjct: 4 VLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN-EPFDVVILDIMLPVHDGWE 62
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
+R + P+L +TA + + G DDY+
Sbjct: 63 ILKSMRESG----------------------VNTPVLMLTALSDVEYRVKGLNMGADDYL 100
Query: 1204 SKPFEDEQLYTAVAR 1218
KPF+ +L V
Sbjct: 101 PKPFDLRELIARVRA 115
|
| >d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Probable two-component system transcriptional regulator Rv1626 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 71.8 bits (175), Expect = 1e-14
Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 25/136 (18%)
Query: 1082 KQILVVDDNMVNRRVAEGALKKHG-AIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMD 1140
+++L+ +D + R L++ G IV G+ AV+ H D MD++MP D
Sbjct: 4 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAE-LHKPDLVIMDVKMPRRD 62
Query: 1141 GFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMD 1200
G A +I PI+ +TA + E+ G
Sbjct: 63 GIDAASEIAS-----------------------KRIAPIVVLTAFSQRDLVERARDAGAM 99
Query: 1201 DYVSKPFEDEQLYTAV 1216
Y+ KPF L A+
Sbjct: 100 AYLVKPFSISDLIPAI 115
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Score = 69.0 bits (168), Expect = 2e-14
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 23/135 (17%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
+LVV+DN + R + ++ G V + + A L H D +DL +P+ DG
Sbjct: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE-HIPDIAIVDLGLPDEDGLS 61
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
+ R + +PIL +TA + + G DDYV
Sbjct: 62 LIRRWRSNDV----------------------SLPILVLTARESWQDKVEVLSAGADDYV 99
Query: 1204 SKPFEDEQLYTAVAR 1218
+KPF E++ +
Sbjct: 100 TKPFHIEEVMARMQA 114
|
| >d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Score = 69.0 bits (168), Expect = 3e-14
Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 23/139 (16%)
Query: 1080 KGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEM 1139
G ++L+VDDN + L V D +A + P D ++
Sbjct: 12 LGGRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGGPV---DLVIVNAAAKNF 68
Query: 1140 DGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGM 1199
DG + T +R E +P+LAM + + ++ G+
Sbjct: 69 DGLRFTAALRSEERT--------------------RQLPVLAMVDPDDRGRMVKALEIGV 108
Query: 1200 DDYVSKPFEDEQLYTAVAR 1218
+D +S+P + ++L V
Sbjct: 109 NDILSRPIDPQELSARVKT 127
|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Score = 66.8 bits (162), Expect = 2e-13
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 21/133 (15%)
Query: 1084 ILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPEMDGFQ 1143
ILVVDD N R+ E L V+ G A+ D +D+ MP MDGF
Sbjct: 4 ILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM-AARDLPDIILLDVMMPGMDGFT 62
Query: 1144 ATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCGMDDYV 1203
+++ H+P++ +TA + Q ++ G D++
Sbjct: 63 VCRKLKDDPTT--------------------RHIPVVLITALDGRGDRIQGLESGASDFL 102
Query: 1204 SKPFEDEQLYTAV 1216
+KP +D L+ V
Sbjct: 103 TKPIDDVMLFARV 115
|
| >d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 89 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: ROP-like superfamily: Homodimeric domain of signal transducing histidine kinase family: Homodimeric domain of signal transducing histidine kinase domain: Sensor histidine kinase TM0853 species: Thermotoga maritima [TaxId: 2336]
Score = 60.5 bits (146), Expect = 7e-12
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 614 RAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDT---ELDAAQLDYAQTAHNSGKDL 670
R + D K++F+A +SHE+RTP+ + + + ++ + ++ + + L
Sbjct: 12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHL 71
Query: 671 ISLINDVLDQAKIESGRL 688
+L+N++LD +++E L
Sbjct: 72 ENLLNELLDFSRLERKSL 89
|
| >d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Positive regulator of the amidase operon AmiR domain: Positive regulator of the amidase operon AmiR species: Pseudomonas aeruginosa [TaxId: 287]
Score = 62.3 bits (150), Expect = 2e-11
Identities = 15/143 (10%), Positives = 33/143 (23%), Gaps = 28/143 (19%)
Query: 1079 LKGKQILVVDDNMVNRRVAEGALKKHGAIVTCVDCGRAAVDKLTPPHNFDACFMDLQMPE 1138
L+ Q+LV++ L + G V A D F +
Sbjct: 9 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEA-----FDVPVDVVFTSIFQNR 63
Query: 1139 MDGFQATWQIRHLENEINEQIASGESSAEMFGNVGLWHVPILAMTADVIQASNEQCMKCG 1198
A ++A+ A Q ++
Sbjct: 64 HHDEIAALLAAG-----------------------TPRTTLVALVEYESPAVLSQIIELE 100
Query: 1199 MDDYVSKPFEDEQLYTAVARFFM 1221
+++P + ++ +
Sbjct: 101 CHGVITQPLDAHRVLPVLVSARR 123
|
| >d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Histidine kinase CheA species: Thermotoga maritima [TaxId: 2336]
Score = 61.7 bits (148), Expect = 2e-11
Identities = 26/208 (12%), Positives = 58/208 (27%), Gaps = 25/208 (12%)
Query: 697 LHDVLDNVLSLFSSKANQKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNSIKFTQDK 756
+ V + + A + E+ + E+ + + +L+ N+I +
Sbjct: 7 ISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEP 66
Query: 757 GHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKSWENFKML 816
++ + N+V + V + G + ++
Sbjct: 67 KEERIAKGKPPIGTLILSA-----RHEGNNVVIE---VEDDGRGIDKEKIIRKAIEKGLI 118
Query: 817 DNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADSSTSRTYGGTGIGLSISRC 876
D E +F P G G+G+ + +
Sbjct: 119 DE----------------SKAATLSDQEILNFLFVPGFSTKEKV-SEVSGRGVGMDVVKN 161
Query: 877 LVELMGGEIGFVSEPGTGSTFSFTVTFT 904
+VE + G I SE G+ + + T
Sbjct: 162 VVESLNGSISIESEKDKGTKVTIRLPLT 189
|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: DNA gyrase/MutL, N-terminal domain domain: Topoisomerase VI-B subunit species: Archaeon Sulfolobus shibatae [TaxId: 2286]
Score = 61.8 bits (149), Expect = 5e-11
Identities = 28/225 (12%), Positives = 59/225 (26%), Gaps = 58/225 (25%)
Query: 733 GDPGRFRQIITNLVGNSIKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSD 792
Q + L+ NS+ T G + +++ +D+ D
Sbjct: 18 NPARALYQTVRELIENSLDATDVHGIL-------PNIKITIDLIDD-------------- 56
Query: 793 KVYNTLSGFPVVDRWKSWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTP 852
R V V D G+GIP + F
Sbjct: 57 ---------------------------------ARQIYKVNVVDNGIGIPPQEVPNAFGR 83
Query: 853 FMQADSSTSRTYG-GTGIGLSISRCLVELMGGE-IGFVSEPGTGSTFSFTVTFTEGERNS 910
+ + +R G+G+ + ++ + I + P + +N
Sbjct: 84 VLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNE 143
Query: 911 LDPKWQQYVPDVSEFRGLRALVIDDKSIRAEVTRYH--LQRLEMA 953
+ V + F G + +R + ++R +
Sbjct: 144 PIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIYEYIKRTYII 188
|
| >d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Length = 67 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: ROP-like superfamily: Homodimeric domain of signal transducing histidine kinase family: Homodimeric domain of signal transducing histidine kinase domain: EnvZ histidine kinase species: Escherichia coli [TaxId: 562]
Score = 53.0 bits (127), Expect = 2e-09
Identities = 12/70 (17%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 613 ARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDAAQLDYAQTAHNSGKDLIS 672
A + ++ +A VSH++RTP+ + +M+ + A++ + ++ +
Sbjct: 3 AGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNA 57
Query: 673 LINDVLDQAK 682
+I +D +
Sbjct: 58 IIEQFIDYLR 67
|
| >d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: Histidine kinase domain: Anti-sigma factor spoIIab species: Bacillus stearothermophilus [TaxId: 1422]
Score = 40.2 bits (93), Expect = 2e-04
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 809 SWENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIFTPFMQADS---STSRTYG 865
S + + + G + + V +ED V + + + +A +T
Sbjct: 45 SEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIPDIEEARQPLFTTKPELE 104
Query: 866 GTGIGLSISRCLVELMGGEIGFVSEPGTGSTFSFT 900
+G+G +I +E E+ SE G+T
Sbjct: 105 RSGMGFTI----MENFMDEVIVESEVNKGTTVYLK 135
|
| >d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: alpha-ketoacid dehydrogenase kinase, C-terminal domain domain: Pyruvate dehydrogenase kinase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (86), Expect = 0.001
Identities = 18/161 (11%), Positives = 34/161 (21%), Gaps = 59/161 (36%)
Query: 697 LHDVLDNVLSLFSSKAN-------QKGIELAIYVSDRVPEVVIGDPGRFRQIITNLVGNS 749
+ DV+ + + +E + P V+ P ++ L NS
Sbjct: 17 VADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNS 76
Query: 750 IKFTQDKGHIFVSVHLADDVRSKVDVKDKVLEKSLNSVQHKSDKVYNTLSGFPVVDRWKS 809
++ V
Sbjct: 77 MRA------------------------------------TVELYEDRKEGYPAVKTLVTL 100
Query: 810 WENFKMLDNTNTMEQLGRIKLLVTVEDTGVGIPLEAQVRIF 850
+ L + + D G G+PL R+F
Sbjct: 101 GKED----------------LSIKISDLGGGVPLRKIDRLF 125
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1223 | |||
| d2bhua3 | 420 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d2df7a1 | 419 | Birnavirus VP2 {Infectious bursal disease virus [T | 100.0 | |
| d1ejda_ | 419 | UDP-N-acetylglucosamine enolpyruvyl transferase (E | 100.0 | |
| d1om4a_ | 418 | Nitric oxide (NO) synthase oxygenase domain {Rat ( | 100.0 | |
| d2gp4a2 | 418 | 6-phosphogluconate dehydratase EDD {Shewanella one | 100.0 | |
| d1f61a_ | 418 | Isocitrate lyase {Mycobacterium tuberculosis [TaxI | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1q7ea_ | 417 | Hypothetical protein YfdW {Escherichia coli [TaxId | 100.0 | |
| d3bona1 | 417 | Botulinum neurotoxin {Clostridium botulinum, serot | 100.0 | |
| d1w6ga1 | 417 | Copper amine oxidase, domain 3 {Arthrobacter globi | 100.0 | |
| d2csga1 | 417 | Hypothetical protein YbiU {Salmonella typhimurium | 100.0 | |
| d1gff1_ | 417 | Microvirus capsid proteins {Bacteriophage G4 [TaxI | 100.0 | |
| d1ltka_ | 417 | Phosphoglycerate kinase {Malaria parasite (Plasmod | 100.0 | |
| d1vema2 | 417 | Bacterial beta-amylase {Bacillus cereus [TaxId: 13 | 100.0 | |
| d1q2oa_ | 416 | Nitric oxide (NO) synthase oxygenase domain {Cow ( | 100.0 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 100.0 | |
| d1d8wa_ | 416 | L-rhamnose isomerase {Escherichia coli [TaxId: 562 | 100.0 | |
| d2vnud4 | 416 | Exosome complex exonuclease RRP44 {Saccharomyces c | 100.0 | |
| d1igwa_ | 416 | Isocitrate lyase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1pb1a_ | 416 | Isocitrate dehydrogenase, ICDH {Escherichia coli [ | 100.0 | |
| d1so2a_ | 415 | cGMP-inhibited 3',5'-cyclic phosphodiesterase B, p | 100.0 | |
| d1dnva_ | 415 | Densovirus capsid protein {Galleria mellonella den | 100.0 | |
| d16pka_ | 415 | Phosphoglycerate kinase {Trypanosoma brucei [TaxId | 100.0 | |
| d1qpga_ | 415 | Phosphoglycerate kinase {Baker's yeast (Saccharomy | 100.0 | |
| d2ieaa2 | 415 | Pyruvate dehydrogenase E1 component, PP module {Es | 100.0 | |
| d2qeec1 | 415 | Uncharacterized protein BH0493 {Bacillus haloduran | 100.0 | |
| d1s5ja2 | 415 | Family B DNA polymerase {Sulfolobus solfataricus [ | 100.0 | |
| d2b8na1 | 414 | Putative glycerate kinase (hypothetical protein TM | 100.0 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 100.0 | |
| d1o20a_ | 414 | Gamma-glutamyl phosphate reductase {Thermotoga mar | 100.0 | |
| d1t0la_ | 414 | NADP-dependent isocitrate dehydrogenase {Human (Ho | 100.0 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 100.0 | |
| d1vh4a_ | 413 | Stabilizer of iron transporter SufD {Escherichia c | 100.0 | |
| d1hdia_ | 413 | Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: | 100.0 | |
| d2qgma1 | 413 | Succinoglycan biosynthesis protein BC3205 {Bacillu | 100.0 | |
| d1lwda_ | 413 | NADP-dependent isocitrate dehydrogenase {Pig (Sus | 100.0 | |
| d1zjca1 | 413 | Aminopeptidase S, AMPS {Staphylococcus aureus [Tax | 100.0 | |
| d1ulva1 | 413 | Glucodextranase, domain A {Arthrobacter globiformi | 100.0 | |
| d1a0tp_ | 413 | Sucrose-specific porin {Enterobacterium (Salmonell | 100.0 | |
| d1ocka_ | 412 | Malonamidase E2 {Bradyrhizobium japonicum [TaxId: | 100.0 | |
| d1yzya1 | 412 | Hypothetical protein HI1011 {Haemophilus influenza | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d1rxxa_ | 412 | Arginine deiminase {Pseudomonas aeruginosa [TaxId: | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1ufaa2 | 412 | Hypothetical protein TT1467, N-terminal domain {Th | 100.0 | |
| d1t3ca_ | 411 | Botulinum neurotoxin {Clostridium botulinum, serot | 100.0 | |
| d2afaa1 | 411 | Putative NAG isomerase YihS {Salmonella typhimuriu | 100.0 | |
| d1ux5a_ | 411 | Bni1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 100.0 | |
| d1izoa_ | 411 | Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis | 100.0 | |
| d2ccaa1 | 410 | Catalase-peroxidase KatG {Mycobacterium tuberculos | 100.0 | |
| d1p1ja1 | 410 | Myo-inositol 1-phosphate synthase {Baker's yeast ( | 100.0 | |
| d1kfsa2 | 410 | DNA polymerase I (Klenow fragment) {Escherichia co | 100.0 | |
| d1uuqa_ | 410 | Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | 100.0 | |
| d1s5ja1 | 410 | Exonuclease domain of family B DNA polymerases {Su | 100.0 | |
| d2cmza1 | 409 | Spike glycoprotein {Vesicular stomatitis indiana v | 100.0 | |
| d1qtma2 | 409 | DNA polymerase I (Klenow fragment) {Thermus aquati | 100.0 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 100.0 | |
| d2g0da1 | 409 | Nisin biosynthesis protein NisC {Lactococcus lacti | 100.0 | |
| d1s9ra_ | 409 | Arginine deiminase {Mycoplasma arginini [TaxId: 20 | 100.0 | |
| d1b25a1 | 409 | Formaldehyde ferredoxin oxidoreductase {Archaeon P | 100.0 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 100.0 | |
| d1dkla_ | 409 | Phytase (myo-inositol-hexakisphosphate-3-phosphohy | 100.0 | |
| d1wzaa2 | 409 | Bacterial alpha-amylase {Halothermothrix orenii [T | 100.0 | |
| d1f1oa_ | 408 | Adenylosuccinate lyase {Bacillus subtilis [TaxId: | 100.0 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 100.0 | |
| d1r76a_ | 408 | Polygalacturonic acid lyase (pectate lyase) {Azosp | 100.0 | |
| d2hhva2 | 408 | DNA polymerase I (Klenow fragment) {Bacillus stear | 100.0 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1h4pa_ | 408 | Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom | 100.0 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d1qs0a_ | 407 | 2-oxoisovalerate dehydrogenase (E1B), PP module {P | 100.0 | |
| d1eu8a_ | 407 | D-maltodextrin-binding protein, MBP {Archaeon Ther | 100.0 | |
| d1qhoa4 | 407 | Cyclodextrin glycosyltransferase {Bacillus stearot | 100.0 | |
| d1mwva1 | 406 | Catalase-peroxidase KatG {Burkholderia pseudomalle | 100.0 | |
| d1itka1 | 406 | Catalase-peroxidase KatG {Archaeon Haloarcula mari | 100.0 | |
| d1ub2a1 | 406 | Catalase-peroxidase KatG {Synechococcus sp. pcc 79 | 100.0 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 100.0 | |
| d1ei6a_ | 406 | Phosphonoacetate hydrolase {Pseudomonas fluorescen | 100.0 | |
| d2ayia1 | 406 | Aminopeptidase T {Thermus thermophilus [TaxId: 274 | 100.0 | |
| d3bmva4 | 406 | Cyclodextrin glycosyltransferase {Thermoanaerobact | 100.0 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 100.0 | |
| d2nwwa1 | 405 | Proton glutamate symport protein {Pyrococcus horik | 100.0 | |
| d1h6za3 | 405 | Pyruvate phosphate dikinase, N-terminal domain {Tr | 100.0 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 100.0 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 100.0 | |
| d1re9a_ | 404 | Cytochrome P450-CAM {Pseudomonas putida [TaxId: 30 | 100.0 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 100.0 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 100.0 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 100.0 | |
| d2b5dx2 | 404 | Alpha-amylase AmyC {Thermotoga maritima [TaxId: 23 | 100.0 | |
| d1h12a_ | 404 | Endo-1,4-beta-xylanase {Pseudoalteromonas haloplan | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1ueda_ | 403 | p450 monoxygenase OxyC {Amycolatopsis orientalis [ | 100.0 | |
| d1xksa_ | 403 | Nuclear pore complex protein Nup133 {Human (Homo s | 100.0 | |
| d1hx0a2 | 403 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 100.0 | |
| d1gwia_ | 403 | Cyp154c1 monooxygenase {Streptomyces coelicolor [T | 100.0 | |
| d3b55a1 | 403 | Succinoglycan biosynthesis protein BC3120 {Bacillu | 100.0 | |
| d2g5da1 | 402 | Membrane-bound lytic murein transglycosylase A, ML | 100.0 | |
| d1dofa_ | 402 | Adenylosuccinate lyase {Archaeon Pyrobaculum aerop | 100.0 | |
| d1xk7a1 | 402 | Crotonobetainyl-CoA:carnitine CoA-transferase, Cai | 100.0 | |
| g1w2w.1 | 402 | Putative methylthioribose-1-phosphate isomerase Yp | 100.0 | |
| d1fp3a_ | 402 | N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) | 100.0 | |
| d1z8oa1 | 402 | Cytochrome P450-ERYF {Saccharopolyspora erythraea | 100.0 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 100.0 | |
| d1iira_ | 401 | UDP-glucosyltransferase GtfB {Amycolatopsis orient | 100.0 | |
| d1rrva_ | 401 | TDP-vancosaminyltransferase GftD {Amycolatopsis or | 100.0 | |
| d2h6fb1 | 401 | Protein farnesyltransferase, beta-subunit {Human ( | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1jdpa_ | 401 | Hormone binding domain of the atrial natriuretic p | 100.0 | |
| d1q5da_ | 401 | Cytochrome P450epok {Sorangium cellulosum [TaxId: | 100.0 | |
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d2r7da2 | 401 | Ribonuclease II family protein DR0020 {Deinococcus | 100.0 | |
| d1odoa_ | 401 | Cyp154a1 monooxygenase {Streptomyces coelicolor [T | 100.0 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 100.0 | |
| d1ru4a_ | 400 | Pectate transeliminase {Erwinia chrysanthemi [TaxI | 100.0 | |
| d3ovwa_ | 400 | Cellobiohydrolase I (cellulase, Endoglucanase I, C | 100.0 | |
| d1inpa_ | 400 | Inositol polyphosphate 1-phosphatase {Cow (Bos tau | 100.0 | |
| d2olua2 | 400 | Penicillin-binding protein 2, PBP2 {Staphylococcus | 100.0 | |
| d1eh9a3 | 400 | Glycosyltrehalose trehalohydrolase, central domain | 100.0 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 100.0 | |
| d1jfba_ | 399 | Cytochrome P450-NOR, nitric reductase {Fungus (Fus | 100.0 | |
| d1s1fa_ | 399 | Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]} | 100.0 | |
| d1ojja_ | 399 | Cellobiohydrolase I (cellulase, Endoglucanase I, C | 100.0 | |
| d2ah2a2 | 399 | Trypanosoma sialidase {Parasitic flagellate protoz | 100.0 | |
| d1bn8a_ | 399 | Pectate lyase {Bacillus subtilis [TaxId: 1423]} | 100.0 | |
| d1vpea_ | 398 | Phosphoglycerate kinase {Thermotoga maritima [TaxI | 100.0 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 100.0 | |
| d1vlja_ | 398 | NADH-dependent butanol dehydrogenase A (TM0820) {T | 100.0 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 100.0 | |
| d1vkoa1 | 397 | Myo-inositol 1-phosphate synthase {Caenorhabditis | 100.0 | |
| d1q1la_ | 397 | Chorismate synthase, AroC {Aquifex aeolicus [TaxId | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d1lf6a1 | 397 | Bacterial glucoamylase, C-terminal domain {Thermoa | 100.0 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 100.0 | |
| d1m7xa3 | 396 | 1,4-alpha-glucan branching enzyme, central domain | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d1io1a_ | 395 | Phase 1 flagellin {Salmonella typhimurium [TaxId: | 100.0 | |
| g1f8v.1 | 395 | Alphanodavirus capsid protein {Pariacoto virus [Ta | 100.0 | |
| d2bfda1 | 395 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 100.0 | |
| d1aora1 | 395 | Aldehyde ferredoxin oxidoreductase {Archaeon Pyroc | 100.0 | |
| d1w36b2 | 395 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1nw1a_ | 395 | Choline kinase {Caenorhabditis elegans [TaxId: 623 | 100.0 | |
| d1n40a_ | 395 | Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tub | 100.0 | |
| d1phpa_ | 394 | Phosphoglycerate kinase {Bacillus stearothermophil | 100.0 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 100.0 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 100.0 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 100.0 | |
| d1u1ha1 | 394 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1lfka_ | 394 | p450 monoxygenase OxyB {Amycolatopsis orientalis [ | 100.0 | |
| d2pb1a1 | 394 | Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) | 100.0 | |
| d1ldja2 | 394 | Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax | 100.0 | |
| d2d3na2 | 394 | Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: | 100.0 | |
| d1q8ia2 | 394 | Family B DNA polymerase {Escherichia coli [TaxId: | 100.0 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 100.0 | |
| d1xlma_ | 393 | D-xylose isomerase {Arthrobacter, strain b3728 [Ta | 100.0 | |
| d1kwga2 | 393 | A4 beta-galactosidase {Thermus thermophilus [TaxId | 100.0 | |
| d1g8ma2 | 393 | AICAR transformylase domain of bifunctional purine | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1e43a2 | 393 | Bacterial alpha-amylase {Chimera (Bacillus amyloli | 100.0 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 100.0 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 100.0 | |
| d2pula1 | 392 | Methylthioribose kinase MtnK {Bacillus subtilis [T | 100.0 | |
| d2d0ta1 | 392 | Indoleamine 2,3-dioxygenase {Human (Homo sapiens) | 100.0 | |
| d1xima_ | 392 | D-xylose isomerase {Actinoplanes missouriensis [Ta | 100.0 | |
| d1yvua2 | 392 | Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax | 100.0 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 100.0 | |
| d1pn3a_ | 391 | TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi | 100.0 | |
| d1nt4a_ | 391 | Glucose-1-phosphatase {Escherichia coli [TaxId: 56 | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 100.0 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 100.0 | |
| d1lwha2 | 391 | 4-alpha-glucanotransferase {Thermotoga maritima [T | 100.0 | |
| d4ubpc2 | 390 | alpha-subunit of urease, catalytic domain {Bacillu | 100.0 | |
| d1nsca_ | 390 | Influenza neuraminidase {Influenza B virus, differ | 100.0 | |
| d1v6sa_ | 390 | Phosphoglycerate kinase {Thermus thermophilus [Tax | 100.0 | |
| d1qopb_ | 390 | Tryptophan synthase, beta-subunit {Salmonella typh | 100.0 | |
| d1oj7a_ | 390 | Hypothetical oxidoreductase yqhD {Escherichia coli | 100.0 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 100.0 | |
| d1e9yb2 | 389 | alpha-subunit of urease, catalytic domain {Helicob | 100.0 | |
| d1jiha2 | 389 | DNA polymerase eta {Baker's yeast (Saccharomyces c | 100.0 | |
| d1sg6a_ | 389 | Dehydroquinate synthase, DHQS {Aspergillus nidulan | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d2o3ia1 | 389 | Hypothetical protein CV3147 {Chromobacterium viola | 100.0 | |
| d1f8ea_ | 388 | Influenza neuraminidase {Influenza A virus, differ | 100.0 | |
| d1u7la_ | 388 | Vacuolar ATP synthase subunit C {Baker's yeast (Sa | 100.0 | |
| d1qxoa_ | 388 | Chorismate synthase, AroC {Streptococcus pneumonia | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 100.0 | |
| d2py5a2 | 388 | phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: | 100.0 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 100.0 | |
| d2dcfa1 | 388 | 6-aminohexanoate-dimer hydrolase NylC {Flavobacter | 100.0 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 100.0 | |
| d1q8ia1 | 388 | Exonuclease domain of family B DNA polymerases {Es | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 100.0 | |
| d1x38a1 | 388 | Beta-D-glucan exohydrolase, N-terminal domain {Bar | 100.0 | |
| d1zeea1 | 387 | Hypothetical protein SO4414 {Shewanella oneidensis | 100.0 | |
| d2aepa1 | 387 | Influenza neuraminidase {Influenza A virus, differ | 100.0 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 100.0 | |
| d1zsqa2 | 387 | Myotubularin-related protein 2, C-terminal domain | 100.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 100.0 | |
| d1bxba_ | 387 | D-xylose isomerase {Thermus aquaticus, subsp. Ther | 100.0 | |
| d2ex0a1 | 387 | Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteur | 100.0 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 100.0 | |
| d2qp8a1 | 387 | beta-secretase (memapsin) {Human (Homo sapiens) [T | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 100.0 | |
| d1r6ta2 | 386 | Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo | 100.0 | |
| d1v8za1 | 386 | Tryptophan synthase, beta-subunit {Archaeon Pyroco | 100.0 | |
| d1muwa_ | 386 | D-xylose isomerase {Streptomyces olivochromogenes | 100.0 | |
| d3c10a1 | 386 | Histone deacetylase 7, HDAC7 {Human (Homo sapiens) | 100.0 | |
| d1v5da_ | 386 | Chitosanase {Bacillus sp., strain k17 [TaxId: 1409 | 100.0 | |
| d1ejxc2 | 385 | alpha-subunit of urease, catalytic domain {Klebsie | 100.0 | |
| d2ix0a4 | 385 | Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 | 100.0 | |
| d1rrma_ | 385 | Lactaldehyde reductase FucO {Escherichia coli [Tax | 100.0 | |
| d1uhga_ | 385 | Ovalbumin {Hen (Gallus gallus) [TaxId: 9031]} | 100.0 | |
| d1ir6a_ | 385 | Exonuclease RecJ {Thermus thermophilus [TaxId: 274 | 100.0 | |
| d1xmxa_ | 385 | Hypothetical protein VC1899 {Vibrio cholerae [TaxI | 100.0 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 100.0 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 100.0 | |
| d1n97a_ | 385 | Cyp175a1 {Thermus thermophilus [TaxId: 274]} | 100.0 | |
| d2c5wb1 | 385 | Penicillin-binding protein 1a, transpeptidase doma | 100.0 | |
| d1mtyb_ | 384 | Methane monooxygenase hydrolase beta subunit {Meth | 100.0 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 100.0 | |
| d3c0na2 | 384 | (Pro)aerolysin, pore-forming lobe {Aeromonas hydro | 100.0 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 100.0 | |
| d1hn0a1 | 384 | Chondroitin ABC lyase I {Proteus vulgaris [TaxId: | 100.0 | |
| d2fvka2 | 384 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 100.0 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 100.0 | |
| d1vz6a_ | 383 | Glutamate N-acetyltransferase 2 (ornithine acetylt | 100.0 | |
| d1mhyb_ | 383 | Methane monooxygenase hydrolase beta subunit {Meth | 100.0 | |
| d1u7ga_ | 383 | Ammonium transporter AmtB {Escherichia coli [TaxId | 100.0 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 100.0 | |
| d1bo1a_ | 383 | Phosphatidylinositol phosphate kinase IIbeta, PIPK | 100.0 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1imva_ | 383 | Pigment epithelium-derived factor, PEDF {Human (Ho | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1wkva1 | 382 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1t1ua1 | 382 | Choline O-acetyltransferase {Rat (Rattus norvegicu | 100.0 | |
| d1ea9c3 | 382 | Maltogenic amylase, central domain {Bacillus sp., | 100.0 | |
| d1xl7a1 | 382 | Peroxisomal carnitine O-octanoyltransferase, COT { | 100.0 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 100.0 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 100.0 | |
| d1by7a_ | 381 | Plasminogen activator inhibitor-2 {Human (Homo sap | 100.0 | |
| d3bvua3 | 381 | Golgi alpha-mannosidase II {Fruit fly (Drosophila | 100.0 | |
| d1odza_ | 381 | Mannanase A, ManA {Pseudomonas cellulosa (Cellvibr | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 100.0 | |
| d2bo4a1 | 381 | Mannosylglycerate synthase, MGS {Rhodothermus mari | 100.0 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 100.0 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 100.0 | |
| d1t6ex_ | 381 | Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu | 100.0 | |
| d2guya2 | 381 | Fungal alpha-amylases {Aspergillus oryzae, Taka-am | 100.0 | |
| d2aaaa2 | 381 | Fungal alpha-amylases {Aspergillus niger, acid amy | 100.0 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 100.0 | |
| d1vbga3 | 380 | Pyruvate phosphate dikinase, N-terminal domain {Ma | 100.0 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 100.0 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 100.0 | |
| d1qyia_ | 380 | Hypothetical protein MW1667 (SA1546) {Staphylococc | 100.0 | |
| d1elja_ | 380 | D-maltodextrin-binding protein, MBP {Archaeon Pyro | 100.0 | |
| d1edga_ | 380 | Endoglucanase CelA {Clostridium cellulolyticum [Ta | 100.0 | |
| d1lj5a_ | 379 | Plasminogen activator inhibitor-1 {Human (Homo sap | 100.0 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 100.0 | |
| d3sila_ | 379 | Salmonella sialidase {Salmonella typhimurium, stra | 100.0 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 100.0 | |
| d1xqga_ | 378 | Maspin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 100.0 | |
| d1jaea2 | 378 | Animal alpha-amylase {Yellow mealworm (Tenebrio mo | 100.0 | |
| d1a59a_ | 377 | Citrate synthase {Antarctic bacterium DS2-3R [TaxI | 100.0 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 100.0 | |
| d1o6ca_ | 377 | UDP-N-acetylglucosamine 2-epimerase {Bacillus subt | 100.0 | |
| d2d5ja1 | 377 | Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 | 100.0 | |
| d2i71a1 | 377 | Hypothetical protein SSO1389 {Sulfolobus solfatari | 100.0 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 100.0 | |
| d1jmma_ | 377 | V-region of surface antigen I/II (SA I/II, PAC) {S | 100.0 | |
| d1ci9a_ | 377 | Esterase EstB {Burkholderia gladioli [TaxId: 28095 | 100.0 | |
| d1nm8a1 | 377 | Carnitine acetyltransferase {Human (Homo sapiens) | 100.0 | |
| d1f6da_ | 376 | UDP-N-acetylglucosamine 2-epimerase {Escherichia c | 100.0 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 100.0 | |
| d1k9oi_ | 376 | Alaserpin (serpin 1) {Tobacco hornworm (Manduca se | 100.0 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 100.0 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 100.0 | |
| d1wu4a1 | 376 | Xylanase Y {Bacillus halodurans [TaxId: 86665]} | 100.0 | |
| d2v3qa1 | 376 | PstS-like phosphate-binding protein {Human (Homo s | 100.0 | |
| d1bhea_ | 376 | Polygalacturonase {Erwinia carotovora, subsp. caro | 100.0 | |
| d2fug41 | 375 | NADH-quinone oxidoreductase chain 4, Nqo4 {Thermus | 100.0 | |
| d1kbla3 | 375 | Pyruvate phosphate dikinase, N-terminal domain {Cl | 100.0 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 100.0 | |
| d1ih7a1 | 375 | Exonuclease domain of family B DNA polymerases {Ba | 100.0 | |
| g1hle.1 | 375 | Elastase inhibitor {Horse (Equus caballus) [TaxId: | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d1txka2 | 374 | Glucans biosynthesis protein G (MdoG, OpgG), N-ter | 100.0 | |
| d1ioma_ | 374 | Citrate synthase {Thermus thermophilus [TaxId: 274 | 100.0 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 100.0 | |
| d2a0ua1 | 374 | Initiation factor 2b {Leishmania major [TaxId: 566 | 100.0 | |
| d1nd7a_ | 374 | WW domain-containing protein 1, WWP1 {Human (Homo | 100.0 | |
| d1rp4a_ | 374 | Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast | 100.0 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 100.0 | |
| d2bvca2 | 374 | Glutamine synthetase, C-terminal domain {Mycobacte | 100.0 | |
| d1so7a_ | 374 | Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1kfwa1 | 374 | Psychrophilic chitinase B {Arthrobacter sp., tad20 | 100.0 | |
| d1v4va_ | 373 | UDP-N-acetylglucosamine 2-epimerase {Thermus therm | 100.0 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 100.0 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 100.0 | |
| d1qo0a_ | 373 | Amide receptor/negative regulator of the amidase o | 100.0 | |
| d1ogmx2 | 373 | Dextranase, catalytic domain {Penicillium miniolut | 100.0 | |
| d1miqa_ | 373 | Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo | 100.0 | |
| d1m0wa2 | 373 | Eukaryotic glutathione synthetase ATP-binding doma | 100.0 | |
| d1r5ya_ | 372 | Queosine tRNA-guanine transglycosylase {Zymomonas | 100.0 | |
| d1qlpa_ | 372 | Antitrypsin, alpha-1 {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1noya_ | 372 | Exonuclease domain of family B DNA polymerases {Ba | 100.0 | |
| d1c3pa_ | 372 | HDAC homologue {Aquifex aeolicus [TaxId: 63363]} | 100.0 | |
| d1j58a_ | 372 | Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil | 100.0 | |
| d1vkpa_ | 372 | Agmatine iminohydrolase {Thale-cress (Arabidopsis | 100.0 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 100.0 | |
| g1htr.1 | 372 | Pepsin(ogen) {Human (Homo sapiens), progastricsin | 100.0 | |
| d1mkfa_ | 371 | Viral chemokine binding protein m3 {Murid herpesvi | 100.0 | |
| d1to6a_ | 371 | Glycerate kinase GlxK {Neisseria meningitidis, (se | 100.0 | |
| d1r53a_ | 371 | Chorismate synthase, AroC {Baker's yeast (Saccharo | 100.0 | |
| d1aj8a_ | 371 | Citrate synthase {Archaeon Pyrococcus furiosus [Ta | 100.0 | |
| d1n7oa1 | 371 | Hyaluronate lyase {Streptococcus pneumoniae [TaxId | 100.0 | |
| d1c8ba_ | 371 | Germination protease {Bacillus megaterium [TaxId: | 100.0 | |
| d1f1sa1 | 371 | Hyaluronate lyase {Streptococcus agalactiae [TaxId | 100.0 | |
| d1r85a_ | 371 | Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: | 100.0 | |
| d1eg1a_ | 371 | Cellobiohydrolase I (cellulase, Endoglucanase I, C | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 100.0 | |
| d2dexx3 | 370 | Peptidylarginine deiminase Pad4, catalytic C-termi | 100.0 | |
| d2gx8a1 | 370 | Nif3-related protein BC4286 {Bacillus cereus [TaxI | 100.0 | |
| d2hgsa4 | 370 | Eukaryotic glutathione synthetase ATP-binding doma | 100.0 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 100.0 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 100.0 | |
| d3psga_ | 370 | Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} | 100.0 | |
| d1iq0a2 | 370 | Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi | 100.0 | |
| d2iw1a1 | 370 | Lipopolysaccharide core biosynthesis protein RfaG | 100.0 | |
| d1rh9a1 | 370 | Beta-mannanase {Tomato (Lycopersicon esculentum) [ | 100.0 | |
| d1itua_ | 369 | Renal dipeptidase {Human (Homo sapiens) [TaxId: 96 | 100.0 | |
| d2heka1 | 369 | Hypothetical protein aq_1910 {Aquifex aeolicus [Ta | 100.0 | |
| d2ewoa1 | 369 | Agmatine iminohydrolase {Streptococcus mutans [Tax | 100.0 | |
| d1rwha1 | 369 | Chondroitinase AC {Arthrobacter aurescens [TaxId: | 100.0 | |
| g1as4.1 | 369 | Antichymotrypsin, alpha-1 {Human (Homo sapiens) [T | 100.0 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 100.0 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 100.0 | |
| d1laxa_ | 369 | D-maltodextrin-binding protein, MBP {Escherichia c | 100.0 | |
| d1e7ua4 | 369 | Phoshoinositide 3-kinase (PI3K), catalytic domain | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 100.0 | |
| d1r8ga_ | 368 | Carboxylate-amine ligase YbdK {Escherichia coli [T | 100.0 | |
| d1f52a2 | 368 | Glutamine synthetase, C-terminal domain {Salmonell | 100.0 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1pyya4 | 368 | Penicillin-binding protein 2x (pbp-2x), transpepti | 100.0 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 100.0 | |
| d1o7xa_ | 367 | Citrate synthase {Archaeon Sulfolobus solfataricus | 100.0 | |
| d1iuqa_ | 367 | Glycerol-3-phosphate (1)-acyltransferase {Cushaw s | 100.0 | |
| d1b65a_ | 367 | L-aminopeptidase D-Ala-esterase/amidase DmpA {Ochr | 100.0 | |
| d1ue8a_ | 367 | Cyp119 {Archaeon Sulfolobus tokodaii [TaxId: 11195 | 100.0 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 100.0 | |
| d1qw9a2 | 367 | Alpha-L-arabinofuranosidase, catalytic domain {Bac | 100.0 | |
| d1ursa_ | 367 | D-maltodextrin-binding protein, MBP {Alicyclobacil | 100.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 100.0 | |
| d1moqa_ | 366 | "Isomerase domain" of glucosamine 6-phosphate synt | 100.0 | |
| d1h6za1 | 366 | Pyruvate phosphate dikinase, C-terminal domain {Tr | 100.0 | |
| d2bvya2 | 366 | Mannanase A, ManA {Cellulomonas fimi [TaxId: 1708] | 100.0 | |
| d1jq5a_ | 366 | Glycerol dehydrogenase {Bacillus stearothermophilu | 100.0 | |
| d1io7a_ | 366 | Cyp119 {Archaeon Sulfolobus solfataricus [TaxId: 2 | 100.0 | |
| d1u5ua_ | 366 | Allene oxide synthase-lipoxygenase protein, N-term | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 100.0 | |
| d1fn9a_ | 365 | Outer capsid protein sigma 3 {Reovirus [TaxId: 108 | 100.0 | |
| d2pnwa1 | 365 | Membrane-bound lytic murein transglycosylase A, ML | 100.0 | |
| d1um0a_ | 365 | Chorismate synthase, AroC {Helicobacter pylori [Ta | 100.0 | |
| d1w85a_ | 365 | Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st | 100.0 | |
| d1u1ha2 | 365 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 100.0 | |
| d3c8ya1 | 365 | Fe-only hydrogenase, catalytic domain {Clostridium | 100.0 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 100.0 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 100.0 | |
| d2jera1 | 364 | Agmatine iminohydrolase {Enterococcus faecalis [Ta | 100.0 | |
| d1t64a_ | 364 | Histone deacetylase 8, HDAC8 {Human (Homo sapiens) | 100.0 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 100.0 | |
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 100.0 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 100.0 | |
| d1kbla1 | 364 | Pyruvate phosphate dikinase, C-terminal domain {Cl | 100.0 | |
| d1kq3a_ | 364 | Glycerol dehydrogenase {Thermotoga maritima [TaxId | 100.0 | |
| d1us3a2 | 364 | Xylanase 10c {Cellvibrio japonicus [TaxId: 155077] | 100.0 | |
| d1oc7a_ | 364 | Cellobiohydrolase II (Cel6) {Humicola insolens, Ce | 100.0 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 100.0 | |
| d1w0pa3 | 364 | Vibrio cholerae sialidase {Vibrio cholerae [TaxId: | 100.0 | |
| d1m7va_ | 363 | Nitric oxide (NO) synthase oxygenase domain {Bacil | 100.0 | |
| d1zaia1 | 363 | Fructose-1,6-bisphosphate aldolase {Rabbit (Orycto | 100.0 | |
| d1khba1 | 363 | Cytosolic phosphoenolpyruvate carboxykinase (GTP-h | 100.0 | |
| d1zq1a2 | 363 | Glutamyl-tRNA(Gln) amidotransferase subunit D, Gat | 100.0 | |
| d1nc5a_ | 363 | Hypothetical protein YteR {Bacillus subtilis [TaxI | 100.0 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 100.0 | |
| d1onha_ | 363 | AMPC beta-Lactamase, class C {Enterobacter cloacae | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1cnza_ | 363 | 3-isopropylmalate dehydrogenase, IPMDH {Salmonella | 100.0 | |
| d1kwfa_ | 363 | CelA cellulase {Clostridium thermocellum [TaxId: 1 | 100.0 | |
| d2a1ha1 | 363 | Branched-chain aminoacid aminotransferase {Human ( | 100.0 | |
| d1umga_ | 362 | ST0318 {Archaeon Sulfolobus tokodaii [TaxId: 11195 | 100.0 | |
| d1gqea_ | 362 | Polypeptide chain release factor 2 (RF2) {Escheric | 100.0 | |
| d1umda_ | 362 | Branched-chain alpha-keto acid dehydrogenase, PP m | 100.0 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 100.0 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 100.0 | |
| d1nqka_ | 362 | Alkanesulfonate monooxygenase SsuD {Escherichia co | 100.0 | |
| d1vlca_ | 362 | 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga | 100.0 | |
| d3thia_ | 362 | Thiaminase I {Paenibacillus thiaminolyticus [TaxId | 100.0 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 100.0 | |
| d2drwa1 | 362 | D-Amino acid amidase DaaA {Ochrobactrum anthropi [ | 100.0 | |
| d2gjxa1 | 362 | beta-hexosaminidase A {Human (Homo sapiens) [TaxId | 100.0 | |
| d1qjwa_ | 362 | Cellobiohydrolase II (Cel6) {Trichoderma reesei, C | 100.0 | |
| d2ozla1 | 361 | E1-beta subunit of pyruvate dehydrogenase (PP modu | 100.0 | |
| d1dhsa_ | 361 | Deoxyhypusine synthase, DHS {Human (Homo sapiens) | 100.0 | |
| d1x1ia1 | 361 | Xanthan lyase {Bacillus sp. gl1 [TaxId: 84635]} | 100.0 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 100.0 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 100.0 | |
| d1rqga2 | 361 | Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys | 100.0 | |
| d1lt7a_ | 361 | Betaine-homocysteine S-methyltransferase {Human (H | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1mxga2 | 361 | Bacterial alpha-amylase {Archaeon Pyrococcus woese | 100.0 | |
| d1pe9a_ | 361 | Pectate lyase {Erwinia chrysanthemi, type A [TaxId | 100.0 | |
| d1qo5a_ | 360 | Fructose-1,6-bisphosphate aldolase {Human (Homo sa | 100.0 | |
| d1sq1a_ | 360 | Chorismate synthase, AroC {Campylobacter jejuni [T | 100.0 | |
| d1jdwa_ | 360 | L-arginine: glycine amidinotransferase {Human (Hom | 100.0 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 100.0 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 100.0 | |
| d1xfia_ | 360 | Hypothetical protein At2g17340 {Thale cress (Arabi | 100.0 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 100.0 | |
| d1oxwa_ | 360 | Patatin {Heartleaf nightshade (Solanum cardiophyll | 100.0 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 100.0 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d4bcla_ | 359 | Bacteriochlorophyll A protein {Prosthecochloris ae | 100.0 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 100.0 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 100.0 | |
| d1yvra1 | 359 | 60-kda SS-aARo ribonucleoprotein {African clawed f | 100.0 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 100.0 | |
| d1x74a1 | 359 | 2-methylacyl-CoA racemase Mcr {Mycobacterium tuber | 100.0 | |
| d2hrca1 | 359 | Ferrochelatase {Human (Homo sapiens) [TaxId: 9606] | 100.0 | |
| d1qcxa_ | 359 | Pectin lyase {Aspergillus niger, type B [TaxId: 50 | 100.0 | |
| d1idka_ | 359 | Pectin lyase {Aspergillus niger, type A [TaxId: 50 | 100.0 | |
| d1o2da_ | 359 | Alcohol dehydrogenase TM0920 {Thermotoga maritima | 100.0 | |
| g1lq8.1 | 358 | Protein C inhibitor {Human (Homo sapiens) [TaxId: | 100.0 | |
| d2hdsa1 | 358 | AMPC beta-Lactamase, class C {Escherichia coli, ce | 100.0 | |
| d1m7ja3 | 358 | N-acyl-D-aminoacid amidohydrolase, catalytic domai | 100.0 | |
| d1dosa_ | 358 | Fructose-bisphosphate aldolase (FBP aldolase) {Esc | 100.0 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 100.0 | |
| d1ecea_ | 358 | Endocellulase E1 {Acidothermus cellulolyticus [Tax | 100.0 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 100.0 | |
| d1edqa2 | 358 | Chitinase A, catalytic domain {Serratia marcescens | 100.0 | |
| d1taza_ | 357 | Catalytic domain of cyclic nucleotide phosphodiest | 100.0 | |
| d2qapa1 | 357 | Fructose-1,6-bisphosphate aldolase {Trypanosome (L | 100.0 | |
| d1a05a_ | 357 | 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill | 100.0 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 100.0 | |
| d2amxa1 | 357 | Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI | 100.0 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 100.0 | |
| d1yyda1 | 357 | Fungal peroxidase (ligninase) {Basidomycetos fungu | 100.0 | |
| d1mppa_ | 357 | Pepsin {Mucor pusillus [TaxId: 4840]} | 100.0 | |
| d1g01a_ | 357 | Alkaline cellulase K catalytic domain {Bacillus sp | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d16vpa_ | 356 | Conserved core of transcriptional regulatory prote | 100.0 | |
| d1r3sa_ | 356 | Uroporphyrinogen decarboxylase, UROD {Human (Homo | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1w8oa3 | 356 | Micromonospora sialidase, N-terminal domain {Micro | 100.0 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d2ebsa2 | 356 | Oligoxyloglucan reducing end-specific cellobiohydr | 100.0 | |
| d1lbqa_ | 356 | Ferrochelatase {Baker's yeast (Saccharomyces cerev | 100.0 | |
| d1v53a1 | 356 | 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c | 100.0 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 100.0 | |
| d1vbga1 | 356 | Pyruvate phosphate dikinase, C-terminal domain {Ma | 100.0 | |
| d1jaka1 | 356 | beta-N-acetylhexosaminidase {Streptomyces plicatus | 100.0 | |
| d1goia2 | 356 | Chitinase B, catalytic domain {Serratia marcescens | 100.0 | |
| d3bu7a1 | 355 | Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [ | 100.0 | |
| d1fuia2 | 355 | L-fucose isomerase, N-terminal and second domains | 100.0 | |
| d1luca_ | 355 | Bacterial luciferase alpha chain, LuxA {Vibrio har | 100.0 | |
| d1jbqa_ | 355 | Cystathionine beta-synthase {Human (Homo sapiens) | 100.0 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 100.0 | |
| g1mtp.1 | 355 | Thermopin {Thermobifida fusca [TaxId: 2021]} | 100.0 | |
| d1iq8a1 | 355 | Archaeosine tRNA-guanine transglycosylase, N-termi | 100.0 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 |
| >d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=0 Score=31709.32 Aligned_cols=1 Identities=0% Similarity=0.537 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~w~~~~~~~~~~~~~viYe~~~~~f~~~Gd~~g~~~~ldyl~~LGv~~i~L~Pv~~~~~~~~~GY~~~d~~~vdp~~G 80 (420)
T d2bhua3 1 TFDWTDADWHGIKLADCVFYEVHVGTFTPEGTYRAAAEKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYAPYAPYG 80 (420)
T ss_dssp SSCCCCTTCCCCCGGGCCEEEECHHHHSSSCSHHHHHHTHHHHHHHTCCEEEECCCEECSSSCCCSTTCCEEEEECGGGC
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 96899989798884224899996002188999999998679999769998995998768888998888566888685659
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~d~~~lv~~aH~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~dlN~~np~v~~~~~~~~~~Wl~~~GVD 160 (420)
T d2bhua3 81 RPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYLSSYAPSYFTDRFSSAWGMGLDYAEPHMRRYVTGNARMWLRDYHFD 160 (420)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCHHHHCGGGEEEEEECSSSEEECTTSHHHHHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEECCCCC
T ss_conf 99999999999974054534465535667777633334443334554322345545368699999988764032014653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 GfR~D~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (420)
T d2bhua3 161 GLRLDATPYMTDDSETHILTELAQEIHELGGTHLLLAEDHRNLPDLVTVNHLDGIWTDDFHHETRVTLTGEQEGYYAGYR 240 (420)
T ss_dssp EEEETTGGGCCCCSSSCHHHHHHHHHHTTCSCCEEEEECSSCCTHHHHTTCCSEEECTHHHHHHHHHHHCCCSGGGGGCC
T ss_pred EEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
T ss_conf 78873333202122310079998888764687425620357753121001125422323210444301334445312330
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~nHD~~~~~~~~~r~~~~~~~~~~~~k~a~~~ll 320 (420)
T d2bhua3 241 GGAEALAYTIRRGWRYEGQFWAVKGEEHERGHPSDALEAPNFVYCIQNHDQIGNRPLGERLHQSDGVTLHEYRGAAALLL 320 (420)
T ss_dssp CSHHHHHHHHHHSSSCEEEEECCTTCCEEEECCCTTCCGGGEEEESCCHHHHHTSTTCCCGGGSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHCHHHHHCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 26678999985144446520443153554126433455213034321566323553112356643565999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 t~pG~P~iy~GdEig~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 400 (420)
T d2bhua3 321 TLPMTPLLFQGQEWAASTPFQFFSDHAGELGQAVSEGRKKEFGGFSGFSGEDVPDPQAEQTFLNSKLNWAEREGGEHART 400 (420)
T ss_dssp HSSSEEEEETTGGGTCSSCCCCCCCCCHHHHHHHHHHHHHHC---------CCCCTTSHHHHHTTSCCSGGGGSHHHHHH
T ss_pred HCCCCCEEECCHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHH
T ss_conf 48998798577511789986323456402203544466311367776665557886555544456678788623476899
Q ss_pred -------------------C
Q ss_conf -------------------5
Q 000920 1082 -------------------K 1082 (1223)
Q Consensus 1082 -------------------~ 1082 (1223)
+
T Consensus 401 ~~~yr~Li~lRk~~p~l~~~ 420 (420)
T d2bhua3 401 LRLYRDLLRLRREDPVLHNR 420 (420)
T ss_dssp HHHHHHHHHHHHHCTTTTCC
T ss_pred HHHHHHHHHHHHCCHHHHCC
T ss_conf 99999999999568987575
|
| >d2df7a1 b.121.4.9 (A:11-429) Birnavirus VP2 {Infectious bursal disease virus [TaxId: 10995]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: Positive stranded ssRNA viruses family: Birnaviridae-like VP domain: Birnavirus VP2 species: Infectious bursal disease virus [TaxId: 10995]
Probab=100.00 E-value=0 Score=31645.64 Aligned_cols=1 Identities=0% Similarity=-2.055 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~ylksll~PetgpasIPDD~~~rH~l~~etstyNL~~~~sGsGllv~fp~~P~s~vGaHY~~~~~~~l~FDq~l~TsQ 80 (419)
T d2df7a1 1 IVPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTYNLTVGDTGSGLIVFFPGFPGSIVGAHYTLQSNGNYKFDQMLLTAQ 80 (419)
T ss_dssp CCHHHHHHHCGGGCCCCCCSSCCCCBEEEEEEEEEEEECCTTSCEEEEECTTCSSSEEEEEEEECTTSCEEEEEEEECSS
T ss_pred CCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEHHHHHHHH
T ss_conf 91465554285678878971788877542033045369726885699991799875210278972788576465556667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 dLkk~~nYgRliSr~~~i~SstLPaGvYAlnGT~Na~tf~GslSEv~~~sYn~lmS~ttN~~DKv~NvLV~~GVtVLsLP 160 (419)
T d2df7a1 81 NLPASYNYCRLVSRSLTVRSSTLPGGVYALNGTINAVTFQGSLSELTDVSYNGLMSATANINDKIGNVLVGEGVTVLSLP 160 (419)
T ss_dssp CGGGTEEEEEEEEEEEEEEECCCCTTCCBCCCEEEEEEESSCGGGCSCCSTTGGGGSCSCGGGEEEEEETTTCEEEECCC
T ss_pred HHHHHHCHHHHHCEEEEEEECCCCCEEEEECCEEEEEEEECCHHHHHCCCHHHHEECCCCHHHHHCCEEECCCEEEEECC
T ss_conf 66766333321002466651357743455246154589824667600246101002126802530789823864999757
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 TgfD~pYVRLgDetP~~gl~p~~~a~ct~a~~PR~Y~I~~a~~yq~~sq~q~gGtt~Tlfs~NiDavtSlsVtGdivFq~ 240 (419)
T d2df7a1 161 TSYDLGYVRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQFSSQYQSGGVTITLFSANIDAITSLSIGGELVFHT 240 (419)
T ss_dssp SCSSCCCEECCEECCCCCSCTTCCCEECCCSSCEEEEEEEEEEEEEEEECCTTCEEEEEEEEEEEESSCEEEEEEEEEEC
T ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEE
T ss_conf 66788735647888765778765430365568733575367545547755678688898750001104267400699972
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~dati~~IG~DGt~vi~~avas~nGlt~G~dn~~pfnlviPT~eITqPITsIKLeivt~k~gg~ag~~~s~~~~ 320 (419)
T d2df7a1 241 SVHGLALDATIYLIGFDGTTVITRAVASDNGLTTGIDNLMPFNLVIPTNEITQPITSIKLEIVTSKSGGQAGDQMSWSAS 320 (419)
T ss_dssp SSSSEEEEEEEEEEETTSCEEEEEEEEEEEECCTTSCEEEEEEEEECGGGCCSCEEEEEEEEEEEETTCCTTCEEEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCC
T ss_conf 36651873799996326974788899706765356355443103236776775512789999952136754753222456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 gs~svT~~gGN~PGvLRPvTlVAYE~vapgsilTVaGVSNyELIPNPeL~KN~~t~yG~~dP~~l~y~K~iLs~Re~L~i 400 (419)
T d2df7a1 321 GSLAVTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTEYGRFDPGAMNYTKLILSERERLGI 400 (419)
T ss_dssp EEEEEEETTTTSTTSSCCEEEEEEESCCTTCEEEEEEEEEEEEEECHHHHTTCCCBCCCCCTTHHHHHHHHHHTHHHHTC
T ss_pred CCEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCEECCCHHHHHCCCCCCCCCCHHHCCHHHHHHCCHHHCCC
T ss_conf 64699965887778768658999840257746999602451324897897406332356583434288777434311486
Q ss_pred ------------------C
Q ss_conf ------------------5
Q 000920 1082 ------------------K 1082 (1223)
Q Consensus 1082 ------------------~ 1082 (1223)
.
T Consensus 401 rtvw~~~~Y~~~~~~f~e~ 419 (419)
T d2df7a1 401 KTVWPTREYTDFREYFMEV 419 (419)
T ss_dssp CSEEEHHHHHHHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHCC
T ss_conf 3660277878999887439
|
| >d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: EPT/RTPC-like family: Enolpyruvate transferase, EPT domain: UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) species: Enterobacter cloacae [TaxId: 550]
Probab=100.00 E-value=0 Score=31637.49 Aligned_cols=1 Identities=0% Similarity=-0.759 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 M~~~~i~g~~~L~G~V~ipgsKS~s~Rali~aaLa~g~s~I~n~l~s~D~~~~~~al~~LG~~I~~~~~~~I~~~~~~~~ 80 (419)
T d1ejda_ 1 MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERDGSVWIDASNVNNF 80 (419)
T ss_dssp CEEEEEEECCCCEEEEECCBCHHHHHHHHHHGGGBSSCEEEESCCCCHHHHHHHHHHHHTTCEEEESSSEEEECTTCCCC
T ss_pred CCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEECCEEEEECCCCCCC
T ss_conf 98699948890477997888389999999999984998999259901999999999997799899898799989997777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~t~~~~~~~~a~~~~~~~~l~Gd~sL~~RPm~~li~~L~~lGa~i~~~~g~~~~~i~g~l~g~~~~~~~ 160 (419)
T d1ejda_ 81 SAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDK 160 (419)
T ss_dssp EECHHHHTTCGGGGGGHHHHHHHHSEEEEECCCCSCCSSCTTHHHHHHHHHTTCEEEEETTEEEEECSSSCBCCEEECSS
T ss_pred CCCHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCEEEECCCCCCCCEEECCC
T ss_conf 66554540354320024425665277524666643457774267889998536169962892445337886674674587
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~Ssq~~s~llla~~~~~g~~~i~~~~~~~~i~~t~~~l~~~G~~i~~~~~~~~~i~g~~~~~~~~~~V~~D~ssAa~~~~ 240 (419)
T d1ejda_ 161 VSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLV 240 (419)
T ss_dssp CCHHHHHHHHHHHTTSBSEEEEETCCCCHHHHHHHHHHHHTTCEEECTTSSEEEEECCSCBCCEEEECCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCEEEECCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHH
T ss_conf 62567788984455237963542024441566677776522010011795499980542346774053570664311333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 aa~i~g~~i~i~~~~~~~~~~~~~~l~~mg~~i~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 320 (419)
T d1ejda_ 241 AAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGT 320 (419)
T ss_dssp HHHTTTCEEEEESCCGGGCHHHHHHHHHTTCEEEECSSEEEEECTTCCCBCCCEECCSTTSCCGGGHHHHHHHHHTSBSE
T ss_pred HHCCCCCEEECCCCCHHHHHHHHHHHHHHCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEECCC
T ss_conf 22156865521677806778898876642313997377699997676544300256632234421145541222187361
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~ke~dr~~~~~~eL~klG~~v~~~~d~l~I~G~~~l~g~~v~~~DHRiAMa~aia~l~~~g~~~I~~~~~i~~SyP 400 (419)
T d1ejda_ 321 GVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYE 400 (419)
T ss_dssp EEEECCSCSSCCTHHHHHHHTTCEEEEETTEEEEECCSCCBCCEECCSSHHHHHHHHHHHHHSBEEEEECCTHHHHHHSS
T ss_pred EEEEEECCCHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEECCCEEEECCCH
T ss_conf 67764023438789999996889799969999997999863761613838999999999981999499836137868734
Q ss_pred ------------------C
Q ss_conf ------------------5
Q 000920 1082 ------------------K 1082 (1223)
Q Consensus 1082 ------------------~ 1082 (1223)
-
T Consensus 401 ~F~~~l~~LGa~I~~~~~~ 419 (419)
T d1ejda_ 401 RIEDKLRALGANIERVKGE 419 (419)
T ss_dssp SHHHHHHTTTCEEEEEECC
T ss_pred HHHHHHHHCCCEEEEECCC
T ss_conf 0999999679899997179
|
| >d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Nitric oxide (NO) synthase oxygenase domain superfamily: Nitric oxide (NO) synthase oxygenase domain family: Nitric oxide (NO) synthase oxygenase domain domain: Nitric oxide (NO) synthase oxygenase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=0 Score=31569.97 Aligned_cols=1 Identities=0% Similarity=-1.487 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~kn~~~~~~~~dtlh~~~~~~~~C~~~~C~gs~m~p~~~~~~p~~~~~~e~ll~~A~~Fi~qyy~e~~~~~~~~~~ 80 (418)
T d1om4a_ 1 RFLKVKNWETDVVLTDTLHLKSTLETGCTEHICMGSIMLPSQHTRKPEDVRTKDQLFPLAKEFLDQYYSSIKRFGSKAHM 80 (418)
T ss_dssp CCEEEEBTTTCCEEEECGGGGCCSCCSCCSSCBCTTCSCC-----------CHHHHHHHHHHHHHHHHHHTTCTTSHHHH
T ss_pred CCEEEEECCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 95245540478756320434167889987564366222453457888889987899999999999999863435868999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~Rl~ev~~eI~~tGtY~~T~~EL~~GAk~AWRNs~RCIGRi~W~~L~V~D~R~v~t~~~mfeal~~Hi~~ATN~G~Ir~~ 160 (418)
T d1om4a_ 81 DRLEEVNKEIESTSTYQLKDTELIYGAKHAWRNASRCVGRIQWSKLQVFDARDCTTAHGMFNYICNHVKYATNKGNLRSA 160 (418)
T ss_dssp HHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHTCTTCTTGGGTTCCEEEECTTCCSHHHHHHHHHHHHHHHHGGGSCCCE
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 99999999997455620899999887899870454233500116571565678999899999999999997079987623
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ITVFpp~~~~~~~~RIwN~QLIrYAGY~~~dGsiiGDPa~vefT~~c~~lGW~~~~t~FDvLPLviq~~g~~p~~feiP~ 240 (418)
T d1om4a_ 161 ITIFPQRTDGKHDFRVWNSQLIRYAGYKQPDGSTLGDPANVQFTEICIQQGWKAPRGRFDVLPLLLQANGNDPELFQIPP 240 (418)
T ss_dssp EEECCCCSSSSSCCEECSSBSSCBCEEECTTSCEEECGGGHHHHHHHHTTTCCCCCCTTCBCCEEEECTTCCCEEECCCG
T ss_pred EEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEECCH
T ss_conf 89737988899986565488886626568998764783137999999976898999987702089997899972574887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 elvlEV~i~HP~~~wf~~LgLkWyavPaiSnM~L~iGGi~y~aaPFNGWYM~TEIgaRNl~D~~RYN~L~~VA~~mGLDT 320 (418)
T d1om4a_ 241 ELVLEVPIRHPKFDWFKDLGLKWYGLPAVSNMLLEIGGLEFSACPFSGWYMGTEIGVRDYCDNSRYNILEEVAKKMDLDM 320 (418)
T ss_dssp GGCCEEECCCSSCTTGGGGCCEEESCCCBCSCEEEETTEEESCCCEECCCBHHHHHTHHHHCTTTTCCHHHHHHHHTCCC
T ss_pred HHEEEECCCCCCCHHHHHCCCCEEECCHHCCCEEEECCEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 78246435598975477559837625011365232088855346745341123365415667565664899999849788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~sLWkDrAlvElN~AVLhSF~~~gVtIvDHHtas~~F~~~~~~E~~~~r~~pgdW~WlvPP~Sgs~tpvfH~~~~n~ 400 (418)
T d1om4a_ 321 RKTSSLWKDQALVEINIAVLYSFQSDKVTIVDHHSATESFIKHMENEYRCRGGCPADWVWIVPPMSGSITPVFHQEMLNY 400 (418)
T ss_dssp SCGGGCHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHSCCCCCHHHHSCSSSGGGSGGGGBCCCBC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHCC
T ss_conf 99740577889999999999899887964805278999999999999981899998852777888653441677765353
Q ss_pred -----------------C
Q ss_conf -----------------5
Q 000920 1082 -----------------K 1082 (1223)
Q Consensus 1082 -----------------~ 1082 (1223)
-
T Consensus 401 ~l~P~f~yq~~~w~th~w 418 (418)
T d1om4a_ 401 RLTPSFEYQPDPWNTHVW 418 (418)
T ss_dssp CCSSEEECCCCGGGTCCC
T ss_pred CCCCCCCCCCCCCCCCCC
T ss_conf 147886557986446789
|
| >d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD {Shewanella oneidensis [TaxId: 70863]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: IlvD/EDD N-terminal domain-like superfamily: IlvD/EDD N-terminal domain-like family: lvD/EDD N-terminal domain-like domain: 6-phosphogluconate dehydratase EDD species: Shewanella oneidensis [TaxId: 70863]
Probab=100.00 E-value=0 Score=31563.47 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~i~~vt~rI~~RS~~~r~~Yl~~i~~~~~~~~~r~~l~c~nlAh~~aa~~~~dk~~l~d~~kP~IGIvns~~d~~pc 80 (418)
T d2gp4a2 1 MHSVVQSVTDRIIARSKASREAYLAALNDARNHGVHRSSLSCGNLAHGFAACNPDDKNALRQLTKANIGIITAFNDMLSA 80 (418)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 97179999999999708779999999999875488711135521777887068302556763179969998352346464
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 h~hl~~l~~~vK~gv~~~gg~~~~~~~~p~~cDGit~G~~GM~~SL~SRelIA~siE~~~~~~~~Dg~V~l~~CDK~vPG 160 (418)
T d2gp4a2 81 HQPYETYPDLLKKACQEVGSVAQVAGGVPAMCDGVTQGQPGMELSLLSREVIAMATAVGLSHNMFDGALLLGICDKIVPG 160 (418)
T ss_dssp ---------CCC---CCCCEEEEECC-BC--CCCCCCSSSGGGGHHHHHHHHHHHHHHHHTTCCCSEEEEECCSTTTTHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHH
T ss_conf 24299999999999997178663567645534651378653013130022789899998624765617997338998768
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~lMaa~r~n~lPsI~v~gGpm~~G~~~~~~~~~~~~~~~G~i~~~el~~~E~~a~p~~GtC~~mgTANTm~~l~EalGl~ 240 (418)
T d2gp4a2 161 LLIGALSFGHLPMLFVPAGPMKSGIPNKEKARIRQQFAQGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQLMLEVMGLQ 240 (418)
T ss_dssp HHHHHHTTTTSCEEECCCCC-------------------CCTHHHHHHHTTSSCHHHHHHHHHCC-----CHHHHHTTCS
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999843678779971577689746777725753032233569999999874668878663267798999999971567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 LPGsa~vpa~~~~r~~~a~~ag~~~~~~~~~~~~~~~~~dIlt~~a~~NAi~~~~A~GGSTNavlHL~AIA~eaGi~l~l 320 (418)
T d2gp4a2 241 LPGSSFVNPDDPLREALNKMAAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVAAARAAGIIVNW 320 (418)
T ss_dssp CTTGGGSCTTCHHHHHHHHHHHHHHHHTSTTSSSCCCHHHHSSHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHTTCCCCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHCCCCCCH
T ss_conf 52124788861899999998999999999851267897786199999711168760562675320629999654898989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~dfd~is~~~P~L~~l~P~G~~~m~d~~~AGGvp~v~k~L~~~glLh~D~~TVtG~tl~e~l~~~~~~~~~i~~~~~p~~ 400 (418)
T d2gp4a2 321 DDFSELSDAVPLLARVYPNGHADINHFHAAGGMAFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGELRWVDGPTV 400 (418)
T ss_dssp HHHHHHHTTCCBCBCCGGGSSCCHHHHHHHTHHHHHHHHHHHHTCSCCCCEETTEECGGGGGEEEEEETTEEEEEECCSS
T ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEECCCCCC
T ss_conf 99999857888544441598621889876069999999998788856999883886799997077766774000468777
Q ss_pred -----------------C
Q ss_conf -----------------5
Q 000920 1082 -----------------K 1082 (1223)
Q Consensus 1082 -----------------~ 1082 (1223)
-
T Consensus 401 ~~d~~VIrp~~~P~~~~G 418 (418)
T d2gp4a2 401 SLDTEVLTSVATPFQNNG 418 (418)
T ss_dssp CSCTTTBCCSSSCSBSSC
T ss_pred CCCCCEECCCCCCCCCCC
T ss_conf 899887576555779999
|
| >d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=31561.63 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~w~~~pRw~~i~r~yta~dv~~lrgs~~~~~~~a~~~a~~Lr~lL~~~~~v~~~Ga~d~~~A~~~ 80 (418)
T d1f61a_ 1 ASVVGTPKSAEQIQQEWDTNPRWKDVTRTYSAEDVVALQGSVVEEHTLARRGAEVLWEQLHDLEWVNALGALTGNMAVQQ 80 (418)
T ss_dssp CCCTTCCCCHHHHHHHHHHCGGGTTCCCSSCHHHHHHTSTTCCCCCHHHHHHHHHHHHHHHHSSCEEEEBCCSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHH
T ss_conf 98456504599999998629882778799899999986688775425789999999999836997884144778999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~kaGf~aiY~SG~~vaa~~s~s~~g~PD~gl~~~~ev~~~v~~I~~~~~~~d~~~~~~~~~~~~~~~~PIIaDaDtGfG~ 160 (418)
T d1f61a_ 81 VRAGLKAIYLSGWQVAGDANLSGHTYPDQSLYPANSVPQVVRRINNALQRADQIAKIEGDTSVENWLAPIVADGEAGFGG 160 (418)
T ss_dssp HHTTCSCEEECHHHHHHHCCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSCSCSSCCEEEECTTCSSS
T ss_pred HHHCCCEEEECHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCC
T ss_conf 98199889854276523454556886665555167899999999988788999998740466433567768753333453
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~nv~rtvk~~i~AGaAgihiEDQ~~~~KkCGH~~GK~lvp~~e~~~ki~Aa~~a~d~~~~~~~iiARTDA~~a~~i~s~ 240 (418)
T d1f61a_ 161 ALNVYELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVVIARTDAEAATLITSD 240 (418)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTTCCEESCS
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCCCCC
T ss_conf 78999999999983786899734677776556667766688999999999998766437998489997160232355333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~d~~D~~~i~g~rt~eG~y~~~~g~e~AI~Ra~aya~~gd~i~~e~~~~~~ee~~~f~~~v~~~~~~~~l~~~~sPsf~w 320 (418)
T d1f61a_ 241 VDERDQPFITGERTREGFYRTKNGIEPCIARAKAYAPFADLIWMETGTPDLEAARQFSEAVKAEYPDQMLAYNCSPSFNW 320 (418)
T ss_dssp CSTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHGGGCSEEEECCSSCCHHHHHHHHHHHHTTCTTCEEEEECCSSSCH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCC
T ss_conf 43233444455457664001457789999999963543671885057899999999986248873332035676567770
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~~~~~~~eL~~~Gy~~~~i~la~~~a~~~a~~~la~~~~~~Gm~ay~elQ~re~~~~~~Gy~~~khQ~~vG~~ 400 (418)
T d1f61a_ 321 KKHLDDATIAKFQKELAAMGFKFQFITLAGFHALNYSMFDLAYGYAQNQMSAYVELQEREFAAEERGYTATKHQREVGAG 400 (418)
T ss_dssp HHHSCHHHHHHHHHHHHHHTEEEEEETTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCCTTSHHHHTTHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHCCC
T ss_conf 11467766543399999609629996138999999999999999986676277877658888874698556401330532
Q ss_pred -----------------C
Q ss_conf -----------------5
Q 000920 1082 -----------------K 1082 (1223)
Q Consensus 1082 -----------------~ 1082 (1223)
.
T Consensus 401 y~D~~~~~~~~~~s~~a~ 418 (418)
T d1f61a_ 401 YFDRIATTVDPNSSTTAL 418 (418)
T ss_dssp HHHHHHHHHCTTSCCCCC
T ss_pred HHHHHHHHHCCCHHHHCC
T ss_conf 788889884787053139
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=0 Score=31556.55 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~ 80 (418)
T d2r5ea1 1 KFDLPKRYQGSTKSVWVEYIQLAAQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYS 80 (418)
T ss_dssp CCCCCGGGTTCCCCHHHHHHHHHHHHCCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98643464179988999999986589988716889999889999999999983899667678998788999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~ 160 (418)
T d2r5ea1 81 QLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLD 160 (418)
T ss_dssp HHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECC
T ss_pred HHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 98599999641589917973321100222013333200122345004678987498699997214556663055666665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~ 240 (418)
T d2r5ea1 161 NNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIG 240 (418)
T ss_dssp HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEE
T ss_pred HHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 88776654114441241786865443331888777753442178122102102120157876531003655543145665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 S~SK~~~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 320 (418)
T d2r5ea1 241 SAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASF 320 (418)
T ss_dssp EHHHHTTCGGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57754268876445323431133444211222333345620210122233222334453256788888988764667766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~~ 400 (418)
T d2r5ea1 321 LAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKK 400 (418)
T ss_dssp HHHTTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCSC
T ss_pred HHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCEEEEEECCC
T ss_conf 76428701379812499787223565111012034467899999999878999968256478877667899899995699
Q ss_pred -----------------C
Q ss_conf -----------------5
Q 000920 1082 -----------------K 1082 (1223)
Q Consensus 1082 -----------------~ 1082 (1223)
.
T Consensus 401 ~e~l~~a~~rl~~~lg~~ 418 (418)
T d2r5ea1 401 DENLQKAAEILRKWKGSS 418 (418)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999987359
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=31554.43 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~r~~~~~~~~~~~~~~~~~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~ 80 (418)
T d1w7la_ 1 QLQARRLDGIDYNPWVEFVKLASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGEL 80 (418)
T ss_dssp CCSCGGGTTCCCCTHHHHHHHHHTSCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 97670002799899999999747899788889889998899999999999857974468899867899999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d 160 (418)
T d1w7la_ 81 LGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLD 160 (418)
T ss_dssp HTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECC
T ss_pred HCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 58998810115642585799999998622677615304556600689999749874014566542223443224575300
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~ 240 (418)
T d1w7la_ 161 PMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIG 240 (418)
T ss_dssp HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEE
T ss_pred HHHHHCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCEEC
T ss_conf 55430223566531112676776564333889999999998629871155666775158989989777165445552001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 S~SK~~~~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 320 (418)
T d1w7la_ 241 SAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRS 320 (418)
T ss_dssp EHHHHTTCGGGCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 56764268877434322320255553023322322232025677887765222333344332223102333200012345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~ 400 (418)
T d1w7la_ 321 LQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK 400 (418)
T ss_dssp HHTTTCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC
T ss_pred HHHCCCCCCCCCCEEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCEEEEEECC
T ss_conf 66438812379820499887710002320101345553589999999997999997454426787667779979999738
Q ss_pred -----------------C
Q ss_conf -----------------5
Q 000920 1082 -----------------K 1082 (1223)
Q Consensus 1082 -----------------~ 1082 (1223)
-
T Consensus 401 ~~~~l~~a~~rl~~~~~~ 418 (418)
T d1w7la_ 401 DEATLQAMDEKLRKWKVE 418 (418)
T ss_dssp CHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHCC
T ss_conf 999999999999998667
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31491.01 Aligned_cols=1 Identities=0% Similarity=-1.291 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 m~~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~ 80 (417)
T d1pv7a_ 1 MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWII 80 (417)
T ss_dssp CHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 98665715899999999999999999999999999802999999999999999999999999999999817539999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (417)
T d1pv7a_ 81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGI 160 (417)
T ss_dssp HHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999988763014678889999877650122233202211222344113456777788765403554455300012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T d1pv7a_ 161 MFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 33456653211003489999999999842332102322002320233222211001222222110246688999887641
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (417)
T d1pv7a_ 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKT 320 (417)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 22222222223333210000011222223322221024444200122210003657888886520113322111457899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 321 LHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998798489999999999999999999999999999997989999999999999999999753
Q ss_pred ----------------C
Q ss_conf ----------------5
Q 000920 1082 ----------------K 1082 (1223)
Q Consensus 1082 ----------------~ 1082 (1223)
-
T Consensus 401 ~~~~~~~~~r~~~~e~a 417 (417)
T d1pv7a_ 401 SGPGPLSLLRRQVNEVA 417 (417)
T ss_dssp CCSSCTTHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHCCCC
T ss_conf 27785436675323379
|
| >d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Hypothetical protein YfdW species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31487.78 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 m~~PL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~ 80 (417)
T d1q7ea_ 1 LSTPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGK 80 (417)
T ss_dssp CCCTTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCCGGGTTTCSSTTSCCHHHHTTCTTCEEEECCTTSHHHH
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHCCCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHH
T ss_conf 99898999899847704899999999983993999898999871210488898985188897089984999769398899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~Li~~aDv~i~n~~pg~~~rlGl~~~~l~~~nP~lI~~sisgfG~~GP~~~~~~~D~~~qA~sG~~~~~g~~~~~P 160 (417)
T d1q7ea_ 81 EVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPP 160 (417)
T ss_dssp HHHHHHHHHCSEEEECCCC-------CCHHHHHHHCTTCEEEEEESSCTTSTTTTSCCCHHHHHHHTTHHHHSSCTTSCC
T ss_pred HHHHHHHHCCCCCEECCCCCCHHHCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999984086407546887175528889999866878788763222454344565334543333223201126656798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~D~~~g~~aa~ailaAL~~R~~tG~Gq~VdvSl~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 240 (417)
T d1q7ea_ 161 LVSAAALGDSNTGMHLLIGLLAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRLDKLGYLEEYPQYPNGTFGDAVP 240 (417)
T ss_dssp CCCSSCTTTHHHHHHHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHTHHHHHHHHHHHHHSCCTTSTTTTTSCCCSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 52224431679999999999999999985499739997789999986689998554320002222244344655677788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 r~~~~~~~~~p~~~~~~~~~~t~dg~i~~~~~~~~~w~~l~~~lg~~dl~~d~~~~~~~~r~~~~~~l~~~i~~~~~~~t 320 (417)
T d1q7ea_ 241 RGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQNWENTCKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTID 320 (417)
T ss_dssp CCTTCCSSSSCEEEEECTTTTTCTTCEEEEECCGGGHHHHHHHTTCGGGGTCTTTSSHHHHGGGHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 66656888886430133015517983999732312556899985885101332000000122119999877765211333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~e~~~~l~~~~ip~~pV~~~~e~~~dpq~~~r~~~~~~~~p~~g~~~~~g~p~~~s~~~~~~~~aP~lGeht~eIL~el 400 (417)
T d1q7ea_ 321 KHEAVAYLTQFDIPCAPVLSMKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIKAAPLLGEHTAAVLQEL 400 (417)
T ss_dssp HHHHHHHHGGGTCCEEECCCHHHHHHCHHHHHTTSEEEEEETTTEEEEEECCSSCCSSCCCCCCCCCCTTTTHHHHHHHT
T ss_pred CCHHEEEEECCCEEEEECCCHHHHHHCHHHHHCCCEEEEECCCCCCEEEECCCEECCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 10110123237702674488999976989897299999666998823644788604899999999999984599999986
Q ss_pred ----------------C
Q ss_conf ----------------5
Q 000920 1082 ----------------K 1082 (1223)
Q Consensus 1082 ----------------~ 1082 (1223)
+
T Consensus 401 G~s~~~I~~L~~~gvI~ 417 (417)
T d1q7ea_ 401 GYSDDEIAAMKQNHAIE 417 (417)
T ss_dssp TCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHCCCCC
T ss_conf 99999999999781939
|
| >d3bona1 d.92.1.7 (A:3-419) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Clostridium neurotoxins, catalytic domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype A [TaxId: 1491]
Probab=100.00 E-value=0 Score=31486.58 Aligned_cols=1 Identities=0% Similarity=-2.820 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~nnnFNyndPVnn~~Ily~~~p~~~~~~~~KAF~I~~nIWIiPER~~~~~~~~~d~~~p~~~~~~~~~yYDpnyLsTD~ 80 (417)
T d3bona1 1 FVNKQFNYKDPVNGVDIAYIKIPNVGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLNPPPEAKQVPVSYYDSTYLSTDN 80 (417)
T ss_dssp CCSCCCCTTSCCCSSSEEEEECC--CCCCCEEEEEEETTEEEEEEECCSSCTTCCSCSCC----CCSSCCCCTTTTCSHH
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCEEECCCCCCCCCCCCCCCCCCHHHCCCCCCEECCCCCCCCH
T ss_conf 96677777898899718999567788776034477426768830343567888666689701025876412753245613
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 EKD~FLk~~IKLf~RINsn~~G~~LL~~I~~aiPflG~s~~~~~~~~~~~~svni~~~~g~~~~~~~NlvIfGPgpnI~e 160 (417)
T d3bona1 81 EKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCINVIQPDGSYRSEELNLVIIGPSADIIQ 160 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHCCCCCBCCSSTTEEBCCGGGEEEEECTTSCEEEEECSEEEEECCSSTTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCEEEECCCCCCCC
T ss_conf 78899999999999854857899999999726877789988711256641157764489854554215899889863145
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 n~~~~~~~~~~n~s~~GfGsi~~i~FsPe~~~~f~~~~~~~~~~~~~~~~F~~DPAl~L~heLIhsLh~LYGik~~~~~~ 240 (417)
T d3bona1 161 FECKSFGHEVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAGHRLYGIAINPNRV 240 (417)
T ss_dssp CEEECCCCSSCCTTTSSCCCCEEEECCTTEEEEECSSHHHHTCTTSCCCCEECCHHHHHHHHHHHHHHHHTTCCCCTTCE
T ss_pred CCCEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 54323034457733047650589997764377604533455555545343542889999999999988760756788741
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~i~~eEl~tFGG~D~~iI~~~~~~~~~~k~l~~yk~Ia~rl~kvn~~~~~~~~l~~yK~~F~~KY~ 320 (417)
T d3bona1 241 FKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDIASTLNKAKSIVGTTASLQYMKNVFKEKYL 320 (417)
T ss_dssp EECCSCHHHHHTTCEEEHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHCCEESSSSSCHHHHHHHHHHHHT
T ss_pred EECCCCCHHHHCCCCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 32121122343246645777765169781105846788899999999999999987525678885236999999988744
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 l~~d~~g~~~vn~~kF~~~yk~L~~~fTe~~~a~~fkvk~Rk~Y~~~~~~~~~~nlldd~iYtI~eGFNi~~~nl~~~~~ 400 (417)
T d3bona1 321 LSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNYTIYDGFNLRNTNLAANFN 400 (417)
T ss_dssp CEECTTCCEECCHHHHHHHHHHHHHTSCHHHHHHHHTCCCCSCSSSCCCEEEECCCSSTTTCBTTTBTSCTTSTTSSTTG
T ss_pred CCCCCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCCEECCCCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 65278885895389999999999711588888766501434420000244100144676531314552146665345557
Q ss_pred ----------------C
Q ss_conf ----------------5
Q 000920 1082 ----------------K 1082 (1223)
Q Consensus 1082 ----------------~ 1082 (1223)
.
T Consensus 401 GQN~~iN~~~~~~~~~~ 417 (417)
T d3bona1 401 GQNTEINNMNFTKLKNF 417 (417)
T ss_dssp GGBTTTTGGGCEEEEEC
T ss_pred CCCHHHCHHHHHHHCCC
T ss_conf 76522153442442069
|
| >d1w6ga1 b.30.2.1 (A:212-628) Copper amine oxidase, domain 3 {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: Amine oxidase catalytic domain family: Amine oxidase catalytic domain domain: Copper amine oxidase, domain 3 species: Arthrobacter globiformis [TaxId: 1665]
Probab=100.00 E-value=0 Score=31485.88 Aligned_cols=1 Identities=0% Similarity=-0.261 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 P~r~~~kp~~i~QP~G~~f~v~~g~~V~w~~W~f~~~f~~r~Gl~l~dv~~~~g~r~r~i~Y~lsl~E~~vpY~~~~p~~ 80 (417)
T d1w6ga1 1 PLRTTQKPISITQPEGPSFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGDRLRPIINRASIAEMVVPYGDPSPIR 80 (417)
T ss_dssp SCCCCCCCCCCCCTTCCSCEEETTTEEEETTEEEEEEEETTTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEBCCCCTTT
T ss_pred CCCCCCCCCEEECCCCCCEEECCCCEEEECCCEEEEEECCCCCCEEEEEEECCCCEEEEEEEEECCEEEEEECCCCCCHH
T ss_conf 98888998305689999879778988997687899970787661999999818984766899801236798788998356
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~D~ge~G~G~~a~~L~~G~DCp~~a~y~D~~~~~~~g~p~~~~naiCifE~d~G~~~rh~~~~~~~~~~~r~~~L 160 (417)
T d1w6ga1 81 SWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHEEDWGILAKHSDLWSGINYTRRNRRM 160 (417)
T ss_dssp TTCEEECCCCCCGGGGBCCCCBTTTBCSSCEEECCEEECTTSCEEECTTCEEEEEEEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred HHCEEEECCCCCHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEEEEE
T ss_conf 21016733452633412346558999866768237872688998861653788624788227888704781368750069
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 Vvr~i~TvgNYdYi~~~~F~~dGsIe~~v~aTG~l~~~~~~~~~~~~g~~v~~~~~g~~H~H~f~~RlD~dIdG~~Nsv~ 240 (417)
T d1w6ga1 161 VISFFTTIGNYDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVE 240 (417)
T ss_dssp EEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCCEECCTTCCSSEEEEETTEEEECEEEEEEEEEEECTTSSCBEEE
T ss_pred EEEEEEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCCCEEE
T ss_conf 99999973202089999994696799999988999871347888986437646756555321357774355479976699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~E~~a~~~~~~~~~r~~~vvN~~k~N~~G~~~gYkl~p~~~~~~l~~~~s~~~ 320 (417)
T d1w6ga1 241 EEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIA 320 (417)
T ss_dssp EEEEEECCSBTTBTTSCCEEEEEEEECBGGGCEECCCGGGTCEEEEEEEEEECTTSCEEEEEEEECCCCCCCSCTTSHHH
T ss_pred EEEEEEECCCCCCCCCCEEEEEEEEEEEHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHH
T ss_conf 99617842797665454789999988762563220266686489998799858899944599855887764579876011
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~ra~fa~~~lwVT~y~d~E~~aag~y~nq~~~~~~l~~~~~~~e~I~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~gf~L 400 (417)
T d1w6ga1 321 RRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKL 400 (417)
T ss_dssp HHTGGGGSSEEEEECCTTCCCTTCSCCBTCCSSSSHHHHHTTCCBCTTBCEEEEEEEEEEECCCGGGSSSEEEEEEEEEE
T ss_pred HCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCEEEEEEE
T ss_conf 02322106378856877662677777447789998467510899423786799995784248985447997620577999
Q ss_pred ----------------C
Q ss_conf ----------------5
Q 000920 1082 ----------------K 1082 (1223)
Q Consensus 1082 ----------------~ 1082 (1223)
.
T Consensus 401 ~P~nFF~~nPald~p~s 417 (417)
T d1w6ga1 401 RPEGFFDRSPVLDVPAN 417 (417)
T ss_dssp EESSCSSSCTTTTCCCC
T ss_pred ECCCCCCCCCCCCCCCC
T ss_conf 87877899986678999
|
| >d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: Clavaminate synthase-like family: YbiU-like domain: Hypothetical protein YbiU species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=31486.08 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~p~dl~~~i~~~K~~Lr~~~~~~~~~f~~l~~~i~~ev~eI~~l~~~G~~iIPeI~F~dI~~~~~~~~~~~~I 80 (417)
T d2csga1 1 TPFTHETLPADPKAAIRQMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKAQGQPVWPIIPFSELAMGNISDATRAEV 80 (417)
T ss_dssp CTTCCSSCCSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCBCCHHHHHTTCCCHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCCCCCHHHHHHH
T ss_conf 99876678898389999999999965678999999999999999999999996199985065589952678998999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 krrG~vVIRnV~p~e~a~~w~~~l~~Yle~n~~~~~~~~~~d~~f~~lp~~~pqiy~lyws~~q~~aR~~p~~~~~~~~l 160 (417)
T d2csga1 81 KRRGCAVIKGHFPREQALAWDQSMLDYLDKNHFDEVYKGPGDNFFGTLSASRPEIYPVYWSQAQMQARQSEEMALAQSFL 160 (417)
T ss_dssp HHHSEEEETTSSCHHHHHHHHHHHHHHHHHTTHHHHCCCCCCCTTTTSSSCCCSSCCCCCBHHHHHHHHCHHHHHHHHHH
T ss_pred HHCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHCCHHHHHHHHHH
T ss_conf 86188998887899999999999999998286420036864310012355677744242689999874495899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~lw~~~~~~~~~~~~~~~l~y~DR~r~r~Pg~~~~~l~pH~D~Gs~erW~d~~y~~~y~~if~g~we~ydPw~~~~R~~ 240 (417)
T d2csga1 161 NRLWQVEHDGKRWFNPDISIIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQQVFASVFNGNVEQYDPWNAAHRTD 240 (417)
T ss_dssp HTTSBCCSSSSCSSEEEEECCCCCCEECCCTTCCBCCEEEEECSCSTHHHHCHHHHHHTHHHHTSCGGGCCTTBCTTGGG
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 85202368866412577743045503137999876786755689850103563125688887558842279876423320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~l~~~~~~cs~FR~fQGwlaLs~~~p~dGtL~v~P~~~~~ay~llrpf~~d~~~~~~~g~~pg~~~~~~~~~h~~l~ 320 (417)
T d2csga1 241 VEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLLHVVPIPEAMAYILLRPLLDDVPEDELCGVAPGRVLPISEQWHPLLM 320 (417)
T ss_dssp CCCCCCTTCCCCCSCCSEEEEEESSCBCTTSSCEEECCCGGGHHHHHHGGGSTTSCTTCCTTCCTTSCEECCTTTCHHHH
T ss_pred CHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 00034478765414778887752366788887379963403577887240125556655677776655545633315650
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~v~ip~~~pGD~V~Wh~d~iH~v~~~~~g~~~s~V~Yi~~~P~~~~N~~yl~~qr~aF~~g~~ppdFp~~~~E~~~~g 400 (417)
T d2csga1 321 AALTSIPPLEAGDSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYARKVKAALETGASPGDFPREDYETTWEG 400 (417)
T ss_dssp TTCEECCCBCTTCEEEEETTCCEEECCBSSCSSCCCEEECCBCEESHHHHHHHHHHHHHHHHTCCCTTSCSCCGGGSCSS
T ss_pred CCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 86155245688887887078753446678999865389842788846559999999999975999877789987543356
Q ss_pred ----------------C
Q ss_conf ----------------5
Q 000920 1082 ----------------K 1082 (1223)
Q Consensus 1082 ----------------~ 1082 (1223)
.
T Consensus 401 r~~~~~ls~~G~r~mGL 417 (417)
T d2csga1 401 RFTLRDLNIHGKRALGI 417 (417)
T ss_dssp BCCGGGCCHHHHHHTTC
T ss_pred CCCHHHCCHHHHHHCCC
T ss_conf 88946528999986289
|
| >d1gff1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage G4 [TaxId: 10843]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: ssDNA viruses family: Microviridae-like VP domain: Microvirus capsid proteins species: Bacteriophage G4 [TaxId: 10843]
Probab=100.00 E-value=0 Score=31482.85 Aligned_cols=1 Identities=0% Similarity=-1.057 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~DlsH~~~~t~~~G~L~PI~~~eVLPGDtf~l~~~~f~Rlat~~~pvmdn~~~d~ffFfVP~RlvW~dnWekF~g~~~ 80 (417)
T d1gff1_ 1 VPHDLSHLVFEAGKIGRLKTISWTPVVAGDSFECDMVGAIRLSPLRRGLAVDSRVDIFSFYIPHRHIYGQQWINFMKDGV 80 (417)
T ss_dssp CEECCCEEEEEEECSSBCEEEEEEEECTTCEEEEEEEEEEEECCBSSSCCSCEEEEEEEEEEESHHHHTHHHHHHHHHGG
T ss_pred CCCCCCCHHHHCCCCCEEEEEEECCCCCCCEEEECHHHHHCCCCCCCHHHHHEEEEEEEEECCEEEEEHHHHHHHHCCCC
T ss_conf 98554500110455650678775142589755644123201266532211210667899852411354125899756878
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 np~~vP~vt~~~g~~~~dYlG~P~~~~~~~~~l~~rAYn~I~NewfRd~nl~ds~~v~~~dgpdd~a~y~lr~~~~~dyf 160 (417)
T d1gff1_ 81 NASPLPPVTCSSGWDSAAYLGTIPSSTLKVPKFLHQGYLNIYNNYFKPPWSDDLTYANPSNMPSEDYKWGVRVANLKSIW 160 (417)
T ss_dssp GCCCCCCEECCSSTTSSGGGSSCCCTTSEECHHHHHHHHHHHHHHTSCTTSCCCCCSSGGGSCTTTTTTCCBCBCCCCST
T ss_pred CCCCCCCEECCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCCC
T ss_conf 98878706458874387618888888732102478999999997713734355335147778875102222201101310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 Ts~LP~~~~~s~~~g~~~~s~d~~gL~~a~a~ti~~lr~a~flQr~~Ei~argG~r~~~~v~~~d~rlqr~eylggg~~~ 240 (417)
T d1gff1_ 161 TAPLPPDTRTSENMTTGTSTIDIMGLQAAYAKLHTEQERDYFMTRYRDIMKEFGGHTSYDGDNRPLLLMRSEFWASGYDV 240 (417)
T ss_dssp TSCCCTTCCSCCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHTTTCCCCTTTTTCCEEEEEEEEEECCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf 13589998877556888664470435666667899999999999999999734983554576827765214765366422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~Tdqt~lg~~sg~g~~~~~~~v~~~~~~EHG~I~~L~~vr~~~t~~q~~~~~~~~~d~~~p~fa~Dp~l~geqP~~n~e 320 (417)
T d1gff1_ 241 DGTDQSSLGQFSGRVQQTFNHKVPRFYVPEHGVIMTLAVTRFPPTHEMEMHYLVGKENLTYTDIACDPALMANLPPREVS 320 (417)
T ss_dssp ECCSTTTTTCEEEECEEEEEEEEEEEECCSSEEEEEEEEEECCCCBTTBCCHHHHSSSCCHHHHSCCHHHHTTSCCEEEE
T ss_pred CCCCCCCHHHHCCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCHHHCCCHHHHCCCCCCCCC
T ss_conf 46653112331032487215633553245541899999853786101045541562001452330680110347742323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 i~~~~~s~d~~v~Gy~~r~~~YR~~p~~V~g~f~sLd~W~~~~~~psl~~~~~v~v~~~~~D~~f~s~~~~q~~~~~~fn 400 (417)
T d1gff1_ 321 LKEFFHSSPDSAKFKIAEGQWYRTQPDRVAFPYNALDGFPFYSALPSTDLKDRVLVNTNNYDEIFQSMQLAHWNMQTKFN 400 (417)
T ss_dssp TTTTBSSCCTTCEEEECTTGGGSCCCCCCCTTTTTCTTCCSBCSCCCSSTGGGTBCCGGGGGGGBSSCSSCSEEEEEEEE
T ss_pred HHHHCCCCCCCEEECCHHHHHHHCCCHHCCCCCCCCCCCEEECCCCCCCHHHCEEECCCCCCHHHHCCCHHHHHEEEEEE
T ss_conf 54404778864014012045552472010200004564132114889984460152687503666137505500114775
Q ss_pred ----------------C
Q ss_conf ----------------5
Q 000920 1082 ----------------K 1082 (1223)
Q Consensus 1082 ----------------~ 1082 (1223)
.
T Consensus 401 ~~v~R~mPt~~~~i~~~ 417 (417)
T d1gff1_ 401 INVYRHMPTTRDSIMTS 417 (417)
T ss_dssp EEEECCCCCHHHHSCCC
T ss_pred EEEEECCCCCCCCCCCC
T ss_conf 67860489854332469
|
| >d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=0 Score=31482.82 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~n~~ti~d~~d~~gK~VllRvD~NvPi~~g~i~dd~RI~~~~pTI~~l~~~~a~kvil~sH~GRP~g~~~~~~SL~ 80 (417)
T d1ltka_ 1 HHHLGNKLSISDLKDIKNKKVLVRVDFNVPIENGIIKDTNRITATLPTINHLKKEGASKIILISHCGRPDGLRNEKYTLK 80 (417)
T ss_dssp CCCSSSCCBSSSCCCCTTCEEEEEECCCCCEETTEESCTHHHHHTHHHHHHHHTTCCSEEEEECCCSCCTTSCCGGGCSH
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHH
T ss_conf 97444675023111258998999943477654993896889999999999999879985999847999999889875879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~a~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~IlLLENvRF~~eE~~~~~~~~~~~~~~~~~n~~~f~k~LA~laD 160 (417)
T d1ltka_ 81 PVAETLKGLLGEEVLFLNDCVGKEVEDKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQNDLTKLAD 160 (417)
T ss_dssp HHHHHHHHHHTSCCEECSCSSSHHHHHHHHSSCTTEEEECCCGGGSHHHHSEEECTTCCEEECCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCEECCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999868465556553202245430247865378740021021012356432221000122307999999860385
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 vyVNDAF~~aHR~haS~vgi~~~~~~aG~L~ekEl~~L~~~l~~~~kP~vaIlGGaKvsdKi~vi~~L~~k~D~iiigG~ 240 (417)
T d1ltka_ 161 VFINDAFGTAHRAHSSMVGVKLNVKASGFLMKKELEYFSKALENPQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGG 240 (417)
T ss_dssp EEEEECTTSCSSCCHHHHCCCCSEEEECHHHHHHHHHHHHHHTSCCSSEEEEEECSCSGGGHHHHHHHHTTCSEEEEESS
T ss_pred EEEECCHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCEEEEEHH
T ss_conf 89963531231047632312120112368999999999999854566736998567744269999878865111663036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 mantfL~~a~g~~ig~sl~e~~~~~~~~~i~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIGp~ 320 (417)
T d1ltka_ 241 MAYTFKKVLNNMKIGTSLFDEAGSKIVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPK 320 (417)
T ss_dssp HHHHHHHHHHCCCCTTSCCCTTGGGTHHHHHHHHHHTTCEEECCSEEEEESSSSSSSCEEEEETTTCCCTTCEEEEECHH
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCH
T ss_conf 67889886148766753103567899999999998639961002322430234567643312333567753444411511
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 Ti~~~~~~I~~aktI~WNGP~GvfE~~~F~~GT~~l~~~i~~~t~~~~~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~ 400 (417)
T d1ltka_ 321 SIENYKDVILTSKTVIWNGPQGVFEMPNFAKGSIECLNLVVEVTKKGAITIVGGGDTASLVEQQNKKNEISHVSTGGGAS 400 (417)
T ss_dssp HHHHHHHHHHTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEECCSTTHHHHHHHTCGGGSSEECCCSHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHH
T ss_conf 12679998646877999898344446624278999999999883179979995789999999639746880897578999
Q ss_pred ----------------C
Q ss_conf ----------------5
Q 000920 1082 ----------------K 1082 (1223)
Q Consensus 1082 ----------------~ 1082 (1223)
-
T Consensus 401 Le~L~G~~LPgieaL~~ 417 (417)
T d1ltka_ 401 LELLEGKELPGVLALSN 417 (417)
T ss_dssp HHHHTTCCCHHHHTSCC
T ss_pred HHHHCCCCCCCEECCCC
T ss_conf 99987999762001249
|
| >d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial beta-amylase species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=31479.51 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~v~VmlPLd~v~~~~~~~~~~~~L~~LK~aGV~gV~vdVwWGivE~~~Pg~Ydws~yd~l~~mv~~~GL 80 (417)
T d1vema2 1 AVNGKGMNPDYKAYLMAPLKKIPEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGM 80 (417)
T ss_dssp CGGGCCCCTTCEEEEECCSSCGGGTSCHHHHHHHHHHHHHTTEEEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 98887788995389986622245667889999999999983997899933424310589983570899999999998698
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 Ki~vvmsfH~cGgnvgd~~ti~lP~Wv~e~~~~pDi~~tDr~G~r~~E~LS~~~d~t~~~~y~~~~~sF~~~f~~~~~~I 160 (417)
T d1vema2 81 KMIPIISTHQCGGNVGDDCNVPIPSWVWNQKSDDSLYFKSETGTVNKETLNPLASDVIRKEYGELYTAFAAAMKPYKDVI 160 (417)
T ss_dssp EEEEEEECSCBSSSTTCCCCBCCCGGGGGGCSSSCSSEECTTCCEECSSCCTTCHHHHHHHHHHHHHHHHHHTGGGGGGB
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 28999874235787788615688888870554888167768898883703766698701004167887999987740047
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~ei~vglGp~GELRYPsyp~~~gW~~pg~GefqCYd~~~~~~fr~wl~~ky~al~aln~aWG~~~~~~~~~~~p~~~~ff 240 (417)
T d1vema2 161 AKIYLSGGPAGELRYPSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILPPSDGEQF 240 (417)
T ss_dssp CCEEECCSGGGBSSCCCCCTTTTCCTTSCCCCCCCSHHHHHHHHHHHHHHHSSHHHHHHHHTCCCSSGGGCCSCSCHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 99986057420003788810015657998866578999999999999860665632235228999754576778888766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~g~~s~YG~fFL~WYs~~L~~Hgdrvl~~A~~~F~~~~~v~l~~Kv~giHWwy~~~t~shaaElTAGydgY~~i~~~~ 320 (417)
T d1vema2 241 LMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAGYNDYSHLLDAF 320 (417)
T ss_dssp HHTGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEEECCCCTTTTCSSSTTTTHHHHTCSCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHH
T ss_conf 67983533335589999999999999999999985189877279999465033689999874154405855779999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~r~~~~l~ftc~em~d~~~~~~~s~Pe~Lv~qv~~aa~~~gv~~~gENAl~~~d~~~~~~i~~~~~~~~~~~fTylRm~~ 400 (417)
T d1vema2 321 KSAKLDVTFTCLEMTDKGSYPEYSMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYNFAGFTLLRYQD 400 (417)
T ss_dssp HHHTCEEEESCCSCCCCCCTTTCCCHHHHHHHHHHHHHHHTCCEEEECSSCCCSHHHHHHHHHHHHHTTCSEEEESCHHH
T ss_pred HHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCH
T ss_conf 86697598761244568899655797999999999999829936510053014867999999971127876157975656
Q ss_pred ----------------C
Q ss_conf ----------------5
Q 000920 1082 ----------------K 1082 (1223)
Q Consensus 1082 ----------------~ 1082 (1223)
.
T Consensus 401 ~l~~~~n~~~F~~fv~~ 417 (417)
T d1vema2 401 VMYNNSLMGKFKDLLGV 417 (417)
T ss_dssp HHTCHHHHHHHHHHTSC
T ss_pred HHCCCCCHHHHHHHHCC
T ss_conf 55796428889887439
|
| >d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Nitric oxide (NO) synthase oxygenase domain superfamily: Nitric oxide (NO) synthase oxygenase domain family: Nitric oxide (NO) synthase oxygenase domain domain: Nitric oxide (NO) synthase oxygenase domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=0 Score=31416.46 Aligned_cols=1 Identities=100% Similarity=1.037 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 ~p~~~~~kn~~~~~~~~dtlh~~~~~~~~C~~~~C~gs~m~~~~~~~~p~~~~~~~e~ll~eA~~Fi~q~y~e~~~~~~~ 80 (416)
T d1q2oa_ 1 GPKFPRVKNWELGSITYDTLCAQSQQDGPCTPRRCLGSLVLPRKLQTRPSPGPPPAEQLLSQARDFINQYYSSIKRSGSQ 80 (416)
T ss_dssp CCSSCEEEBTTTCCEEECCGGGGCCBCCSCCSSCBCTTCSCC-----------CCHHHHHHHHHHHHHHHHHHTTCTTSH
T ss_pred CCCCEEEEECCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99745655404687563324442678899876733560025644466888999998999999999999999862756778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~R~~ev~~eI~~tGtY~~T~eEL~~GAk~AWRNs~RCIGR~~W~~L~V~D~R~v~t~~~mfeal~~Hi~~ATN~G~I 160 (416)
T d1q2oa_ 81 AHEERLQEVEAEVASTGTYHLRESELVFGAKQAWRNAPRCVGRIQWGKLQVFDARDCSSAQEMFTYICNHIKYATNRGNL 160 (416)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHCTTCTTGGGTTCCEEEECTTCCSHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999997464620899999887899870455222300216572665678999899999999999997079987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 r~~ITVFp~~~~g~~~~RIwN~QLIrYAGY~~~dGsiiGDPa~vefT~~c~~lGW~~~~t~FDvLPLViq~~g~~p~~fe 240 (416)
T d1q2oa_ 161 RSAITVFPQRAPGRGDFRIWNSQLVRYAGYRQQDGSVRGDPANVEITELCIQHGWTPGNGRFDVLPLLLQAPDEAPELFV 240 (416)
T ss_dssp CCEEEECCCCBTTBCCCEECSSBSSCBCEEECTTSCEEECGGGHHHHHHHHHTTCCCCCSSSCBCCEEEECTTSCCEEEC
T ss_pred CEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCEEEE
T ss_conf 63389737988999986675488786626578998764684216999999976888999987710289997899972673
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 iP~elvlEV~i~HP~~~wf~~LgLkWyavPaiSnM~L~iGGi~y~aaPFNGWYM~TEIgaRnl~D~~RYN~L~~VA~~mG 320 (416)
T d1q2oa_ 241 LPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLLEIGGLEFSAAPFSGWYMSTEIGTRDLCDPHRYNILEDVAVCMD 320 (416)
T ss_dssp CCGGGSCEEECCCSSCGGGGGGCCEEESCCEECSCEEEETTEEESCCCEECCCBHHHHHTHHHHCTTTTCCHHHHHHHTT
T ss_pred CCHHHEEEECCCCCCCCHHHHCCCCEEECCHHCCCEEEECCEEECCCCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 88778357346798983066638857605211255000077844245645330022355430455566666899999848
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 LDT~~~~sLWkDrAlvElN~AVLhSF~~~gVtIvDHHtas~~F~~~~~~E~~~~r~~pgdW~WlvPP~S~s~TpvfH~~~ 400 (416)
T d1q2oa_ 321 LDTRTTSSLWKDKAAVEINLAVLHSFQLAKVTIVDHHAATVSFMKHLDNEQKARGGCPADWAWIVPPISGSLTPVFHQEM 400 (416)
T ss_dssp CCTTCGGGCHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHSCCBCCHHHHSCSSSGGGSGGGGBCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHH
T ss_conf 78889740467789999999999899877964704068899999999999983899998852777888754541676665
Q ss_pred ---------------C
Q ss_conf ---------------5
Q 000920 1082 ---------------K 1082 (1223)
Q Consensus 1082 ---------------~ 1082 (1223)
.
T Consensus 401 ~n~~l~P~f~yq~~~w 416 (416)
T d1q2oa_ 401 VNYILSPAFRYQPDPW 416 (416)
T ss_dssp BBCBCSSEEECCCCCC
T ss_pred HHCCCCCCCCCCCCCC
T ss_conf 5034588865589999
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31412.00 Aligned_cols=1 Identities=0% Similarity=-1.590 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 l~~~~~l~~~D~ei~~~i~~e~~rq~~~i~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~r 80 (416)
T d1dfoa_ 1 LKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDR 80 (416)
T ss_dssp CCTTCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98658845519999999999999987690586476657899999855741475658899975447773099999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 a~~lF~a~~anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~ 160 (416)
T d1dfoa_ 81 AKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQ 160 (416)
T ss_dssp HHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHH
T ss_pred HHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 99983998205601557557999999863898866421465433335555544467237999646687667447899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 a~~~kPklIi~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGPrggiI~~ 240 (416)
T d1dfoa_ 161 AKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILA 240 (416)
T ss_dssp HHHHCCSEEEEECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCCSCEEEEE
T ss_pred HHHHCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEECCHHHHHCCEECCCCCCCCCCCCEEEEEHHHCCCCCCCEEEEE
T ss_conf 99836564873432255655879999998751715872212000003244347860000046521001046878638984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggTdnHlvlv 320 (416)
T d1dfoa_ 241 KGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLV 320 (416)
T ss_dssp SSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
T ss_conf 23117689998766086534685177898988779987097889999999999999999998389443369988753688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 dl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~~~~~~~~~~ 400 (416)
T d1dfoa_ 321 DLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSINDEAVIER 400 (416)
T ss_dssp ECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 73045898999999999729688678588999988889821767789984899879999999999999972786799999
Q ss_pred ---------------C
Q ss_conf ---------------5
Q 000920 1082 ---------------K 1082 (1223)
Q Consensus 1082 ---------------~ 1082 (1223)
.
T Consensus 401 ir~~V~~l~~~fPly~ 416 (416)
T d1dfoa_ 401 IKGKVLDICARYPVYA 416 (416)
T ss_dssp HHHHHHHHHHHSCSBC
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 9999999998089989
|
| >d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: L-rhamnose isomerase domain: L-rhamnose isomerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31411.52 Aligned_cols=1 Identities=0% Similarity=0.537 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 s~i~~~ye~a~e~ya~~GID~e~al~~L~~~~Is~h~WqGddv~gFe~~~g~ltGGi~~tGnyPG~aR~~~E~~~D~~~~ 80 (416)
T d1d8wa_ 1 TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQA 80 (416)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHTTCCEEEEGGGGTTTCCCCC--------------CSCCCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 91679999999999983988999999985484443036678765534677767776021278899889989999889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~Lipg~~~vnLH~~y~~~~~~vdrd~i~p~hf~~w~~wAk~~glglDfNpt~Fshp~~~~g~sLshpd~~iR~~wI~H~ 160 (416)
T d1d8wa_ 81 MRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDSIRQFWIDHC 160 (416)
T ss_dssp HHTSCSCEEEEEEGGGCCCSSCCCGGGCCGGGGHHHHHHHHHTTCEEEEECCCSSSGGGTTSCSTTCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98568998400033320258866412258574899999999749774757655578442257762588889999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~c~~I~~~~G~~~g~~~v~niWi~DG~k~~~~d~~~~R~Rl~eSLdeI~a~~~d~~~~ld~vE~K~Fg~g~esy~vgs~ 240 (416)
T d1d8wa_ 161 KASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSN 240 (416)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEECCCCEESSCCSCSHHHHHHHHHHHHHHTCSCCCTTTEEEEEECCSCBTTBCSEESSCH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCEEEECCCH
T ss_conf 99999999986300776204776577676888683159999999999998715876650454230125565035763738
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 df~~~yal~~~a~~llD~GH~hPtenI~dkisalll~~~~~~lH~sr~~rwDsDhvvi~~del~~I~~ElVr~~~ld~v~ 320 (416)
T d1d8wa_ 241 EFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVH 320 (416)
T ss_dssp HHHHHHHHHHTCEEEEETTSSCTTCCHHHHHHHHTTTSSCEEEEECBCSSSSCCBCCCSSHHHHHHHHHHHHTTGGGTEE
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE
T ss_conf 88998763489679986798787665999999999727542576388856677612036489999999999645544422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~LD~fdasinrI~a~v~g~rn~qka~l~ALL~p~~~L~~~q~~gD~t~rla~~Ee~K~~P~~avW~~~c~r~~vp~~~~ 400 (416)
T d1d8wa_ 321 IGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAPGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSE 400 (416)
T ss_dssp EEECCCCCSSCHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHTTTCHHHHHHHHHHHTTSCHHHHHHHHHHHTTCCCSTT
T ss_pred ECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 30023422466199999999999999999976899999999986799999999999851981889999999739998768
Q ss_pred ---------------C
Q ss_conf ---------------5
Q 000920 1082 ---------------K 1082 (1223)
Q Consensus 1082 ---------------~ 1082 (1223)
+
T Consensus 401 ~~~~v~~Ye~~v~~kR 416 (416)
T d1d8wa_ 401 WLESVRAYEKEILSRR 416 (416)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 8999999999885349
|
| >d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RNB domain-like domain: Exosome complex exonuclease RRP44 species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=100.00 E-value=0 Score=31406.61 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~Dl~~l~~~tID~~~a~d~DDAisi~~~~~g~~~l~VHIADva 80 (416)
T d2vnud4 1 FSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVT 80 (416)
T ss_dssp CCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGGGSEECTTSCCEEEESSSCCCCCEEEEEEECTTSCEEEEEEEECHH
T ss_pred CCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCHH
T ss_conf 98789964432368643764453122115752323771177898799769999546565899995899599999983578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~v~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~ls~~~~SL~~~~~r~a~s~~~~~~~~g~i~~~~~~~s~I~~~~~ltY 160 (416)
T d2vnud4 81 HFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSY 160 (416)
T ss_dssp HHSCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTCCEEEEEEEEEEEEBSEEEEH
T ss_pred HHHCCCCHHHHHHHHHCEEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCEEEHHHHCCCCCCCH
T ss_conf 86299998999999848037589971144788886545205698202467765540210144420332012033322321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~ev~~~l~~~~~~~~~~~~l~~L~~~a~~l~~~R~~~g~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~s~~lVeE~Mi~A 240 (416)
T d2vnud4 161 EQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLA 240 (416)
T ss_dssp HHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEECSSSSCEEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHH
T ss_conf 66788751354321000678999999999999998568754578742799423335565431122242014078776543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 N~~vA~~l~~~~~~~~~~R~h~~p~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 320 (416)
T d2vnud4 241 NISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMM 320 (416)
T ss_dssp HHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSCHHHHHHHHHTCCBTTBTTHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 08999999984788876400079997999999999997012676865225578999987475672699999999887788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~a~~~~~~~~s~~~~~H~gLgl~~YthfTSPIRRY~DLv~hrqL~a~l~~~~~~~~~~~~e~l~~i~~~~~~~e~~a~~a 400 (416)
T d2vnud4 321 AAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFA 400 (416)
T ss_dssp CCEEEEGGGSCGGGGCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87763015579976273765722015168677637899999999999737999977443999999999999999999999
Q ss_pred ---------------C
Q ss_conf ---------------5
Q 000920 1082 ---------------K 1082 (1223)
Q Consensus 1082 ---------------~ 1082 (1223)
.
T Consensus 401 er~~~~~~~~~~lk~~ 416 (416)
T d2vnud4 401 GRASIEYYVGQVMRNN 416 (416)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999997578
|
| >d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Isocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31403.76 Aligned_cols=1 Identities=0% Similarity=-0.725 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 k~~~~~v~~~~~~w~~pRw~~ikR~Yta~dV~~lRgs~~~~~~~a~~~A~kL~~lL~~~~~~~~v~~lGa~d~~~A~~~~ 80 (416)
T d1igwa_ 1 KTRTQQIEELQKEWTQPRWEGITRPYSAEDVVKLRGSVNPECTLAQLGAAKMWRLLHGESKKGYINSLGALTGGQALQQA 80 (416)
T ss_dssp CCHHHHHHHHHHHTTSGGGTTCCCSSCHHHHHHTTCSCCCCCHHHHHHHHHHHHHHTTTSSSSSEEEEBCCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH
T ss_conf 96799999999986696515689998999999966985876837899999999998604445706547757799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 kaGf~aiYvSG~~~sA~~~~~~~~~PD~gl~~~~~v~~~~~~I~~a~~~~d~~~~~~~~~~~~~~~~d~~lPIIADaDtG 160 (416)
T d1igwa_ 81 KAGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAVVERINNTFRRADQIQWSAGIEPGDPRYVDYFLPIVADAEAG 160 (416)
T ss_dssp HHTCCCEEECHHHHHHHSCTTCCCCCSSSCSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCTTCTTCCCCCCCEEEECTTC
T ss_pred HCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCC
T ss_conf 80998899646100165555678877765462889999999999988889999875200235444444310157742245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 fG~~~nv~r~vk~~i~AGaagihiEDQ~~~~KkCGHl~gK~lv~~~e~~~ki~AA~~a~d~~~~~~~IiARTDA~~a~li 240 (416)
T d1igwa_ 161 FGGVLNAFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLCADVTGVPTLLVARTDADAADLI 240 (416)
T ss_dssp SSSHHHHHHHHHHHHHTTCSEEEEESBCGGGCCCC----CEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHH
T ss_conf 67658999999999967871897226766430100148974678999999999999877427998279986230555444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~sd~d~~D~~fi~g~Rt~eG~yr~~~G~d~aI~R~~aya~gADli~~Et~~~~~e~a~~fa~~v~~~~p~~~l~yn~SPs 320 (416)
T d1igwa_ 241 TSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRGLAYAPYADLVWCETSTPDLELARRFAQAIHAKYPGKLLAYNCSPS 320 (416)
T ss_dssp SCCCCGGGGGGEEEEECTTSCEEECCSHHHHHHHHHHHGGGCSEEEECCSSCCHHHHHHHHHHHHHHSTTCEEEEECC--
T ss_pred HCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCC
T ss_conf 20131115672057647343522247859999999984322667753168998999999998607876567623478887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 fnw~~~~~~~~~~~~~~eL~~lGy~~~~~~la~~ha~~~a~~~l~~~~~~~~gm~ayv~~~Q~~E~~~~~~g~~~~~hQ~ 400 (416)
T d1igwa_ 321 FNWQKNLDDKTIASFQQQLSDMGYKFQFITLAGIHSMWFNMFDLANAYAQGEGMKHYVEKVQQPEFAAAKDGYTFVSHQQ 400 (416)
T ss_dssp --------------HHHHHHHHTEEEEEETTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTHHHHHHHHTTTCCTTSHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEHHH
T ss_conf 67201235567999999999659888996768999999999999999863498899999875898887744863020886
Q ss_pred ---------------C
Q ss_conf ---------------5
Q 000920 1082 ---------------K 1082 (1223)
Q Consensus 1082 ---------------~ 1082 (1223)
-
T Consensus 401 ~~G~~y~D~~~~~~~g 416 (416)
T d1igwa_ 401 EVGTGYFDKVTTIIQG 416 (416)
T ss_dssp HTTHHHHHHHHHHHCC
T ss_pred HHCCCHHHHHHHHHCC
T ss_conf 7542489999987169
|
| >d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: Isocitrate dehydrogenase, ICDH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31403.73 Aligned_cols=1 Identities=0% Similarity=-1.624 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~IavipGDGIGPEV~~ealkVL~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~ 80 (416)
T d1pb1a_ 1 MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQ 80 (416)
T ss_dssp CCCCCCCCSSCBCCEEETTEEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCSHHHHHHHCT
T ss_pred CCCCCCCCCCCCEEEEECCEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHCC
T ss_conf 99752279998679977998818999889998988624999999999999999874268985589998235799998499
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~lp~~t~~~~~~~da~l~Gav~~P~~~~~~~~~l~lR~~ldlyanvRP~r~~pg~~spl~~~~~iD~vIvREnteG~Y 160 (416)
T d1pb1a_ 81 DVWLPAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIY 160 (416)
T ss_dssp TCSSCHHHHHHHHHHSEEEECCCCCCSSSCCCCHHHHHHHHTTCCEEEEEEECCTTCCCSSSCGGGCEEEEEEECSSGGG
T ss_pred CCCCCHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 77799999999985498952886699988876667889987486474132002678886434556446599861134422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~t~~~~~Ri~r~AF~~A~~~~r~~vt~v~Kanvl~~~~gl 240 (416)
T d1pb1a_ 161 AGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGA 240 (416)
T ss_dssp GCCEECTTCHHHHHHHHHHHHTSCCCCCSCCSSCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
T ss_conf 45033456520688998766530530113653036765402122228999999999996699968999789765401678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 f~~~~~e~a~e~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~Ggl 320 (416)
T d1pb1a_ 241 FKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGI 320 (416)
T ss_dssp HHHHHHHHHHHHHCCEECTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCC
T ss_conf 99999999987631223344431101046676334289999999999985210467789613578777777888862376
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 Gl~pSanig~~~a~fEp~HGSAPdiaGk~iANP~a~Ils~amML~~lg~~~~A~~i~~Av~~~l~~g~~T~Dl~~~~~~g 400 (416)
T d1pb1a_ 321 GIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGA 400 (416)
T ss_dssp TTCCCEEECSSCEEEECCSCCCGGGTTSSCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTEECHHHHTTSSSC
T ss_pred CCCCCCCCCCCCEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 65445466877248877888615547999759299999999999987997899999999999997598124300046899
Q ss_pred ---------------C
Q ss_conf ---------------5
Q 000920 1082 ---------------K 1082 (1223)
Q Consensus 1082 ---------------~ 1082 (1223)
.
T Consensus 401 g~~~T~e~~daI~~~l 416 (416)
T d1pb1a_ 401 KLLKCSEFGDAIIENM 416 (416)
T ss_dssp EECCHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHCC
T ss_conf 7727999999999659
|
| >d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: PDEase domain: cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=31332.93 Aligned_cols=1 Identities=100% Similarity=-0.394 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~l~~l~~W~Fd~f~l~~~~~~~~~~~L~~~~~~lf~~~gl~~~f~i~~~~l~~Fl~~v~~~Y~~nPYHN 80 (415)
T d1so2a_ 1 LDLILVEEYDSLIEKMSNWNFPIFELVEKMGEKSGRILSQVMYTLFQDTGLLEIFKIPTQQFMNYFRALENGYRDIPYHN 80 (415)
T ss_dssp CCSHHHHHHHHHHHHHTSTTCCHHHHHHHHGGGGGGHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHTTSCSCSSSS
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHCCHHHCCCCCCHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 96110688999997224689882020155212334489999999999778377529899999999999998579998827
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~HA~dV~q~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lE~~alliAA 160 (415)
T d1so2a_ 81 RIHATDVLHAVWYLTTRPVPGLQQIHNGCGTGNETDSDGRINHGRIAYISSKSCSNPDESYGCLSSNIPALELMALYVAA 160 (415)
T ss_dssp HHHHHHHHHHHHHHTTSCEETCCCCCCC---------------CCCCCCCCTTCCCSSTTEECGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHH
T ss_conf 89999999999999956554422111222233221111222332100122222333322201565408999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 l~HDvdHpG~nN~Flv~t~~pLA~lYnd~SVLEnhH~a~a~~lll~~~~~nil~~l~~~e~~~~r~lii~~ILATDm~~H 240 (415)
T d1so2a_ 161 AMHDYDHPGRTNAFLVATNAPQAVLYNDRSVLENHHAASAWNLYLSRPEYNFLLHLDHVEFKRFRFLVIEAILATDLKKH 240 (415)
T ss_dssp HHTTTTCCSCCHHHHHHTTCHHHHHTTTSSHHHHHHHHHHHHHHHTCGGGCTTTTSCHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHCCCCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 97226999966889987188789985898888999999999999648542143069999999999999999970464567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 f~~l~~f~~~~~~~~~~~~~~~~~~~r~lv~~~lik~ADIs~~~rp~~v~~~W~~~l~~EF~~QGd~E~~lglp~sp~~D 320 (415)
T d1so2a_ 241 FDFLAEFNAKANDVNSNGIEWSNENDRLLVCQVCIKLADINGPAKVRDLHLKWTEGIVNEFYEQGDEEANLGLPISPFMD 320 (415)
T ss_dssp HHHHHHHHHHHTSSSCCCCCTTCHHHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999998740047767787888999999999998624744582889999999999999987799866999985668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 R~~~~~~k~QigFi~~iv~PLf~~l~~a~~~~~~~~~~~~~n~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (415)
T d1so2a_ 321 RSSPQLAKLQESFITHIVGPLCNSYDAAGLLPGQWLEAEEDNDTESGDDEDGEELDTEDEEMENNLNPKPPRRKSRRRIF 400 (415)
T ss_dssp TTSCCHHHHHHHHHHHTHHHHHHHHHHTTCSCCEECC-------------------------------------CCSSEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 66564157899999998999999999983255999999998898778757664134400015554455776056677776
Q ss_pred --------------C
Q ss_conf --------------5
Q 000920 1082 --------------K 1082 (1223)
Q Consensus 1082 --------------~ 1082 (1223)
+
T Consensus 401 ~~~~~~l~en~~~w~ 415 (415)
T d1so2a_ 401 CQLMHHLTENHKIWK 415 (415)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 689999986255129
|
| >d1dnva_ b.121.5.3 (A:) Densovirus capsid protein {Galleria mellonella densovirus [TaxId: 37138]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) superfamily: ssDNA viruses family: Densovirinae-like VP domain: Densovirus capsid protein species: Galleria mellonella densovirus [TaxId: 37138]
Probab=100.00 E-value=0 Score=31332.86 Aligned_cols=1 Identities=0% Similarity=-0.825 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~IpRPi~~~~~~~~tyrK~HkFltfGlA~kvi~~~~t~~t~~~~~lTTsLaeiPw~~p~~YMnpsEF~lLP~Gs~v~e 80 (415)
T d1dnva_ 1 VYIIPRPFSNFGKKLSTYTKSHKFMIFGLANNVIGPTGTGTTAVNRLLTTCLAEIPWQKLPLYMNQSEFDLLPPGSRVVE 80 (415)
T ss_dssp CCCCCCCCCCCCCEECCEEEEEEEEEECCCSCCCEECSSTTTCSBEEEEEEEEECCTTBGGGTCCHHHHHTCCTTCBCCC
T ss_pred CEEECCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHEEHHHCCCCCCCEECCHHHHHHCCCCCEEEE
T ss_conf 93746676778886799965446776200121001456662023232210151160345525248878710689866889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~vkvv~rn~RiAFeTnSS~T~lATLNQnk~~~~A~GLN~~~~G~nr~~T~f~s~epMiPt~t~~~~y~~v~~~~~y~~~ 160 (415)
T d1dnva_ 81 CNVKVIFRTNRIAFETSSTVTKQATLNQISNVQTAIGLNKLGWGINRAFTAFQSDQPMIPTATTAPKYEPVTGDTGYRGM 160 (415)
T ss_dssp EEEEEEEEEEEECCCCSCTTSCCCCSCCCCEEEEESTHHHHTTCBCCCCCCCCSSSCCSCCCCCCCCSSEECSSSCEECH
T ss_pred EEEEEEEECCEEEEEECCCCCCCEECCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 77899984670577755763101001022330110100302454213654556888745667786522355654689999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 v~~~YG~~~~n~~~~~~~~~~P~hq~g~~~~L~nYfc~~~~~~~~tgGwpcl~~hi~e~da~~~~g~~vl~~~YkPk~g~ 240 (415)
T d1dnva_ 161 IADYYGADSTNDTAFGNAGNYPHHQVSSFTFLQNYYCMYQQTNQGTGGWPCLAEHLQQFDSKTVNNQCLIDVTYKPKMGL 240 (415)
T ss_dssp HHHHHCCCSSCTTSSSSSSSCCGGGGCCEEECCCEEEECCBSSSSCCCCCCGGGGSEECCTTTTTTSBCCCCEECCSSCB
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC
T ss_conf 99974766678633457777875672772110002577652046889836789998750256678857888852776432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ik~P~~~~i~g~p~~~g~~sv~~n~~~~~~a~~~~~~~at~n~s~s~~nl~~~fp~~~~~iyt~IEKsQ~~~~G~~g~~~ 320 (415)
T d1dnva_ 241 IKSPLNYKIIGQPTVKGTISVGDNLVNMRGAVVTNPPEATQNVAESTHNLTRNFPADLFNIYSDIEKSQVLHKGPWGHEN 320 (415)
T ss_dssp CSCCCCBCCCCCTTBTTBBSCCCCCCCSCCSCEECCCCCBCSSSCBCCCCCEECCCCCCCCCSSCTTSSBSCCTTTCCCT
T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHEECCCCCCCC
T ss_conf 46743354336655332120010044225765478255443321200204315884103023422133402126766668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 p~iQPSlHIGv~pVPaLTTa~l~~~~~~~~n~TDt~~ywdV~~~~~V~~~~Pt~~P~~~~~nv~~~~~~y~~nl~~~~~t 400 (415)
T d1dnva_ 321 PQIQPSVHIGIQAVPALTTGALLINSSPLNSWTDSMGYIDVMSSCTVMEAQPTHFPFSTEANTNPGNTIYRINLTPNSLT 400 (415)
T ss_dssp TCCCCCCCCCCEEEEECCBCCCCSSCCSCCCBCCEEEEEEEEEEECCEECCCCCSTTCCSCCBCTTTCCCCCCCSSCSSC
T ss_pred CCCCCCEEECCEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 75376246332204400113223378776762202589999988999855886544556678883303230446765556
Q ss_pred --------------C
Q ss_conf --------------5
Q 000920 1082 --------------K 1082 (1223)
Q Consensus 1082 --------------~ 1082 (1223)
.
T Consensus 401 s~~~GlY~~~~~~~~ 415 (415)
T d1dnva_ 401 SAFNGLYGNGATLGN 415 (415)
T ss_dssp SSSCCSSSCCSSCCC
T ss_pred CCCCCEEECCHHCCC
T ss_conf 521212641110379
|
| >d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=0 Score=31332.65 Aligned_cols=1 Identities=100% Similarity=0.803 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~ktl~d~~~~~K~VlvRvD~NvPi~~g~I~d~~RI~~~~pTi~~ll~~~akvvl~SH~GRPkg~~~~~~~~~~~~~~~~ 80 (415)
T d16pka_ 1 EKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVP 80 (415)
T ss_dssp CBCBGGGSCCTTCEEEEEECCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCCBCGGGHHHHHHTTCCT
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99741013878998999934675555995897388999999999999788979999058998987555322222223312
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~sL~~~a~~L~~~l~~~V~f~~~~~~~~~~i~~l~~g~i~LLEN~Rf~~eE~~~~~~~~~~fak~LA~laDiyVN 160 (415)
T d16pka_ 81 GFQQKATLKPVAKRLSELLLRPVTFAPDCLNAADVVSKMSPGDVVLLENVRFYKEEGSKKAKDREAMAKILASYGDVYIS 160 (415)
T ss_dssp TCCGGGCSHHHHHHHHHHHTSCCEEESCTTSCHHHHHTCCTTCEEEECCGGGBGGGGCSSHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 36833473889999998758674234431024456650577416874200024532322122138999998722868994
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 DAFg~sHR~haS~~Gi~~~lps~~gg~L~ekEl~~L~~~l~~p~~P~~aIlGGaKisdKi~~i~~l~~k~D~iligG~~a 240 (415)
T d16pka_ 161 DAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMA 240 (415)
T ss_dssp ECGGGTTSCCTTTTHHHHHHTCCEECHHHHHHHHHHHHHHSCCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEECTTHH
T ss_pred CCCCHHHCCCCCEECCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHH
T ss_conf 56202204675122200014224678999999999999970977551899853653437999998885365565322188
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ntfL~a~G~~iG~sl~e~~~~~~a~~i~~~~~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~ 320 (415)
T d16pka_ 241 YTFLKAQGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEK 320 (415)
T ss_dssp HHHHHHHTCCCTTCCCCGGGHHHHHHHHHHHHHTTCEEECCSSEEEESSSSCCSSCEECSSSCCCTTCEEEEECHHHHHH
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89999809805544304443212666522321151678511203303101334443112222234543777787776667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~I~~AktI~wNGP~GvfE~~~F~~GT~~l~~~ia~~t~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~L~~ 400 (415)
T d16pka_ 321 YVQTIGKCKSAIWNGPMGVFEMVPYSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLEL 400 (415)
T ss_dssp HHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHHCCEEEECSHHHHHHHHHTTCTTTSSEECSCHHHHHHH
T ss_pred HHHHHHHHCEEEEECCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCEEECCHHHHHHH
T ss_conf 76766513569996653213155151799999999998413479989987789999999719735870798778999999
Q ss_pred --------------C
Q ss_conf --------------5
Q 000920 1082 --------------K 1082 (1223)
Q Consensus 1082 --------------~ 1082 (1223)
+
T Consensus 401 L~G~~LPgi~aL~~k 415 (415)
T d16pka_ 401 LEGKTLPGVTVLDDK 415 (415)
T ss_dssp HTTCCCHHHHTSCBC
T ss_pred HCCCCCCHHHHHHCC
T ss_conf 879996257785069
|
| >d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=31331.72 Aligned_cols=1 Identities=100% Similarity=1.201 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~kltl~d~dl~gK~VlvRvD~NvPi~~g~I~Dd~RI~~~lpTI~~L~~~~ak~vIL~SH~GRP~g~~~~~~Sl~~va 80 (415)
T d1qpga_ 1 SLSSKLSVQDLDLKDKRVFIRVDFNVPLDGKKITSNQRIVAALPTIKYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVA 80 (415)
T ss_dssp CTTSBCBGGGCCCTTCEEEEECCCCCCBSSSSBSCCHHHHHHHHHHHHHHTTCCSEEEEECCCSCCCSSCCGGGCSHHHH
T ss_pred CCCCCCCHHHCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHH
T ss_conf 98666850322757998999932467643997896789999999999999879988999624899999879776869999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~L~~~l~~~V~f~~d~~g~~~~~~i~~l~~g~I~LLENvRF~~eE~~~~~~~~~~~~~~~~n~~~fak~La~laDiyVN 160 (415)
T d1qpga_ 81 KELQSLLGKDVTFLNDCVGPEVEAAVKASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYIN 160 (415)
T ss_dssp HHHHHHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSHHHHTEEEETTEEEECCHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 99985319846984577776311012334467579942111143310246543011100100269999987547848996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 DAFg~aHR~haS~~g~~~~~s~aG~lmekEl~~L~~~l~~p~rP~vaIlGGaKvsdKi~vl~~l~~k~D~iiigG~mant 240 (415)
T d1qpga_ 161 DAFGTAHRAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFT 240 (415)
T ss_dssp CCGGGTTSCCHHHHCCCCSCEEECHHHHHHHHHHHHHHSSCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECGGGHHH
T ss_pred CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEEECHHHHH
T ss_conf 55011100565423455785633288999999999996499998599995476442899998787535557751103577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 flk~~~g~~ig~s~~e~~~~~~~~~i~~~a~~~~~~i~lP~D~~v~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~ 320 (415)
T d1qpga_ 241 FKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKL 320 (415)
T ss_dssp HHHHHSCCCCCSCCCCHHHHHHHHHHHHHHHHHTCEEECCSEEEEESSSSSSCCCCEEETTTCCCTTCEEEEECHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf 88760377666531122211023689999876598675512278730245555531230013558765123466046789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~I~~a~tI~wNGP~GvfE~~~F~~GT~~i~~~ia~~~~~~~~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~L~~L 400 (415)
T d1qpga_ 321 FAATVAKAKTIVWNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELL 400 (415)
T ss_dssp HHHHHTTCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHHTCEEEECCHHHHHHHHHTTCGGGSSEECCCTHHHHHHH
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHH
T ss_conf 99875368679997774152465240689999999997215798299957899999997598568806967789999998
Q ss_pred --------------C
Q ss_conf --------------5
Q 000920 1082 --------------K 1082 (1223)
Q Consensus 1082 --------------~ 1082 (1223)
+
T Consensus 401 ~G~~LPgi~aL~~~k 415 (415)
T d1qpga_ 401 EGKELPGVAFLSEKK 415 (415)
T ss_dssp TSCCCHHHHTSCBCC
T ss_pred CCCCCCHHHHHHHCC
T ss_conf 799970798885288
|
| >d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: TK-like PP module domain: Pyruvate dehydrogenase E1 component, PP module species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31330.45 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~e~~~~~~iR~~~~~~v~~a~~~~~~~GGH~g~~ls~~~l~~vl~~~~~~~p~~~~~d~ 80 (415)
T d2ieaa2 1 ISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGD 80 (415)
T ss_dssp CCCSSCSSCGGGCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCCHHHHHHHHHHHHHHHHTCCCCCSSSCCC
T ss_pred CCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99853688854368999889999999999999999999982678998898254679999999999985148987688887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~ilskGHas~~lYa~l~~~g~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~a~~~ 160 (415)
T d2ieaa2 81 LVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRG 160 (415)
T ss_dssp EEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 79835750299999999839875035777753135789898888777888776798202157899999999987876530
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d~N~~~~~~~~~~~~~~~~~~~~~~~~~gw~v~~~~~~ 240 (415)
T d2ieaa2 161 LKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWG 240 (415)
T ss_dssp SCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBC
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCEEECCCHHCCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf 23578842899954320023899999988887288808999967863356671014311488999998648626874031
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~d~~~al~~~~~~~v~g~~~~~~~~~ga~~~~~~~~~~~~~~~l~~~l~~~~~~~l~~dGHd~~~l~~a~~~ 320 (415)
T d2ieaa2 241 SRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKK 320 (415)
T ss_dssp GGGHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTGGGSHHHHTTSTTSCHHHHTTCCBGGGCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 02444320102434334121033431100002441566665303421046787663131455665315740446899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ak~~~d~P~vI~a~TiKGkGlp~A~e~~n~~H~~kkl~~Ee~~~~r~rl~~pl~d~~~e~~pf~~p~~~s~e~~~l~err 400 (415)
T d2ieaa2 321 AQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQR 400 (415)
T ss_dssp HHHCCSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHHTTCSCCHHHHTTCCCCCCCTTSHHHHHHHHHH
T ss_pred HHHCCCCCEEEEEECCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98658996289973523368874334621012788899999999999839999813443179778888889999999999
Q ss_pred --------------C
Q ss_conf --------------5
Q 000920 1082 --------------K 1082 (1223)
Q Consensus 1082 --------------~ 1082 (1223)
.
T Consensus 401 ~~Lgg~lP~r~~~~~ 415 (415)
T d2ieaa2 401 QKLHGYLPSRQPNFT 415 (415)
T ss_dssp HTTTSCSSCCCSSCC
T ss_pred HHHCCCCCCCCCCCC
T ss_conf 984898876787889
|
| >d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Uronate isomerase-like domain: Uncharacterized protein BH0493 species: Bacillus halodurans [TaxId: 86665]
Probab=100.00 E-value=0 Score=31324.82 Aligned_cols=1 Identities=0% Similarity=0.305 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~s~~~ia~~L~~~i~~~PIID~H~HL~p~~~~~~~f~~~~~l~~~hyyk~r~mr~~gv~e~~itg~~~~~~~~~~~~~ 80 (415)
T d2qeec1 1 SINSREVLAEKVKNAVNNQPVTDMHTHLFSPNFGEILLWDIDELLTYHYLVAEVMRWTDVSIEAFWAMSKREQADLIWEE 80 (415)
T ss_dssp CCCCHHHHHHHHHHHHHHSCEEECSCSCCCGGGGGGSBCSHHHHHTSHHHHHHHHTTCCSCHHHHHHSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHH
T ss_conf 97458999999999975898868888969778511677881888431799999998539998980789847889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~p~~~w~~~~l~~~~~l~~~~~~~~~~~i~~~~~~~~~e~~~r~ll~~~nVe~v~tTDdP~D~L~~H~~~~~~~~ 160 (415)
T d2qeec1 81 LFIKRSPVSEACRGVLTCLQGLGLDPATRDLQVYREYFAKKTSEEQVDTVLQLANVSDVVMTNDPFDDNERISWLEGKQP 160 (415)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHTCCHHHHHHHHHHHTTEEEEECCBCTTCHHHHHHHHTTCCC
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 97428935899999888852567666767899999999762511179999998282035213797321899998604688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~v~ptfRpD~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (415)
T d2qeec1 161 DSRFHAALRLDPLLNEYEQTKHRLRDWGYKVNDEWNEGSIQEVKRFLTDWIERMDPVYMAVSLPPTFSFPEESNRGRIIR 240 (415)
T ss_dssp CTTEECCEECHHHHHCHHHHHHHHHHTTCCCCSSCSHHHHHHHHHHHHHHHHHHCCSCEEEEECTTCCSSCSSHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 75223002479886321007899999886145644576799999999999987325688885687788677999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~l~~~~~e~g~~mQlH~Ga~Rn~n~~~~~~g~~~g~~~~~~L~~ll~~~~~~k~il~~l~~~~~~e~a~lag~f~~v~l 320 (415)
T d2qeec1 241 DCLLPVAEKHNIPFAMMIGVKKRVHPALGDAGDFVGKASMDGVEHLLREYPNNKFLVTMLSRENQHELVVLARKFSNLMI 320 (415)
T ss_dssp HTHHHHHHHHTCCEEEEECEETTSSGGGGGGGCEECCCCSHHHHHHHHHCTTSCEEEEECCGGGHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCEEE
T ss_conf 99999987569817873376667773103478775767999999999848998879996896538999999853887067
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 gg~WWf~d~~~gm~~~l~~~~e~~~~~fvg~~TDsRsf~~~~~rheyfRRil~~~L~~~v~d~v~~g~~~~~~~l~~~v~ 400 (415)
T d2qeec1 321 FGCWWFMNNPEIINEMTRMRMEMLGTSFIPQHSDARVLEQLIYKWHHSKSIIAEVLIDKYDDILQAGWEVTEEEIKRDVA 400 (415)
T ss_dssp BCCCGGGCSHHHHHHHHHHHHHHHTTCSBCCCCCCSBTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 77016636899999999999874400112254586644303378999999999999999999973689997999999999
Q ss_pred --------------C
Q ss_conf --------------5
Q 000920 1082 --------------K 1082 (1223)
Q Consensus 1082 --------------~ 1082 (1223)
-
T Consensus 401 dI~y~Na~~yfg~~~ 415 (415)
T d2qeec1 401 DLFSRNFWRFVGRND 415 (415)
T ss_dssp HHHTHHHHHHHTCCC
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999828899
|
| >d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: Family B DNA polymerase species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=31324.37 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~iP~k~~~~~~~~~~~~~~~~~~~~y~Gg~V~~P~~G~~~~V~~lDf~SLYPSii~~~Ni~ 80 (415)
T d1s5ja2 1 EISTWVKNLYYWEHRKRNWLIPLKEEILAKSSNIRTSALIKGKGYKGAVVIDPPAGIFFNITVLDFASLYPSIIRTWNLS 80 (415)
T ss_dssp CHHHHHHHHHHHHHHHHTBCCCCHHHHHHTTCC--------------CCCCCCCSEEEEEEEEEEETTHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEECCCCCHHHHHHHCCC
T ss_conf 96489999999999977985789742245453201110034577387387079987657647878345339999996889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~R~~~~~~~~k~~~~~~~~~~~~d~~Q~A~Ki~~NS~ 160 (415)
T d1s5ja2 81 YETVDIQQCKKPYEVKDETGEVLHIVCMDRPGITAVITGLLRDFRVKIYKKKAKNPNNSEEQKLLYDVVQRAMKVFINAT 160 (415)
T ss_dssp TTTBSCSCCSSCCEECCSSSCCCEEBCCSSCCHHHHHHHHHHHHHHHTHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30237534578765445799745786378887427899999999987420021123442268888788999999877777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 YG~~G~~~~~~~~~~~A~~iT~~GR~~i~~~~~~~~~~g~~viygDTDSv~v~~~~~~~~e~~~~~i~~~~~~~le~e~~ 240 (415)
T d1s5ja2 161 YGVFGAETFPLYAPRVAESVTALGRYVITSTVKKAREEGLTVLYGDTDSLFLLNPPKNSLENIIKWVKTTFNLDLEVDKT 240 (415)
T ss_dssp HHHHHSTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEESCCHHHHHHHHHHHHHHSSCCEEEEEE
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 77775466442328999899999999999888876605962466423314896288753999999987332212554425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~KKrY~g~~~dgkl~~kGie~vRrd~~~~~k~~~~~vl~~il~~~~~~~~~~~~~~i~~~l~~~~~~l~~~~ 320 (415)
T d1s5ja2 241 YKFVAFSGLKKNYFGVYQDGKVDIKGMLVKKRNTPEFVKKVFNEVKELMISINSPNDVKEIKRKIVDVVKGSYEKLKNKG 320 (415)
T ss_dssp EEEEEEC----CEEEECSSSCCCEESCCC--------CCSHHHHHHHHHHTTCCSCCTTHHHHHHHHHHHHHHCTTC---
T ss_pred EEHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 51664431033203220255400110000356537889999999999997169878888878899999999999986079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 i~~~dl~~~k~l~k~~~~Y~~~~p~hv~~A~~l~~~g~~~~~GdrI~YViv~~~~~~~p~~~~~~~~iD~~yYi~~l~~p 400 (415)
T d1s5ja2 321 YNLDELAFKVMLSKPLDAYKKNTPQHVKAALQLRPFGVNVLPRDIIYYVKVRSKDGVKPVQLAKVTEIDAEKYLEALRST 400 (415)
T ss_dssp -------------------------------------------------------------------CCSSTTHHHHHTT
T ss_pred CCHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 78688202320146734311799389999999985599999989899999947999882220357998889999999999
Q ss_pred --------------C
Q ss_conf --------------5
Q 000920 1082 --------------K 1082 (1223)
Q Consensus 1082 --------------~ 1082 (1223)
.
T Consensus 401 l~~il~~~g~~~~el 415 (415)
T d1s5ja2 401 FEQILRAFGVSWDEI 415 (415)
T ss_dssp STTHHHHHSCCCCCC
T ss_pred HHHHHHHHCCCHHHC
T ss_conf 999998628994439
|
| >d2b8na1 c.118.1.1 (A:4-417) Putative glycerate kinase (hypothetical protein TM1585) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: GckA/TtuD-like superfamily: GckA/TtuD-like family: GckA/TtuD-like domain: Putative glycerate kinase (hypothetical protein TM1585) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=31257.60 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~lr~~~~~if~a~v~av~P~~~v~~~l~~~~~~~i~vvg~GKAa~~MA~~~~~~lg~~i~~g~vv~~~~~~~~~~~~i 80 (414)
T d2b8na1 1 PESLKKLAIEIVKKSIEAVFPDRAVKETLPKLNLDRVILVAVGKAAWRMAKAAYEVLGKKIRKGVVVTKYGHSEGPIDDF 80 (414)
T ss_dssp CHHHHHHHHHHHHHHHHTTSHHHHHHTTHHHHCCCSEEEEEESTTHHHHHHHHHHHHGGGEEEEEEEEETTCCCSCCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCE
T ss_conf 95689999999999998419789999847757999889999818999999999997276677059995898677888874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~v~~a~HP~Pd~~s~~Aa~~il~~~~~~~~~Dlvl~LISGGgSALl~~P~~gitL~dk~~~~~~Ll~sGA~I~eiN~VRk 160 (414)
T d2b8na1 81 EIYEAGHPVPDENTIKTTRRVLELVDQLNENDTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALLKSGASIEEINTVRK 160 (414)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHHHHSSCCTTCEEEEEECTTHHHHSCCBCTTCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 89978999998779999999999996489887689985088540011488999999999999999858998799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~lS~iKGG~La~~a~pa~v~sLilSDV~GDdl~~IaSGPTvpd~~t~~da~~il~~y~l~~p~~v~~~l~~~~~~~~~~v 240 (414)
T d2b8na1 161 HLSQVKGGRFAERVFPAKVVALVLSDVLGDRLDVIASGPAWPDSSTSEDALKVLEKYGIETSESVKRAILQETPKHLSNV 240 (414)
T ss_dssp TTBSSTTTHHHHHHTTSEEEEEEECCSTTCCTTTGGGCTTSCCCCCHHHHHHHHHHTTCCCCHHHHHHHTSCCCSCCSSE
T ss_pred HHHHCCCCHHHHHHCCCCEEEEEEECCCCCCCHHEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 98753662799971558568999805889981312048867899888999999998398777689986513578433454
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~ii~~n~~al~aa~~~a~~~G~~~~~~~~~l~Gea~~va~~~a~~~~~~~~~~~~~~~p~~li~GGEtTV~v~g~G~G 320 (414)
T d2b8na1 241 EIHLIGNVQKVCDEAKSLAKEKGFNAEIITTSLDCEAREAGRFIASIMKEVKFKDRPLKKPAALIFGGETVVHVKGNGIG 320 (414)
T ss_dssp EEEEEECHHHHHHHHHHHHHHTTCEEEEEEEEECSBHHHHHHHHHHHHHHHHHHCCSSCSSEEEEEEECCBCCCCSCCCC
T ss_pred CEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEECCCCCC
T ss_conf 13895689999999999998749943995342457689999999999999985278888974899756568870689998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 GRNqElaL~~a~~l~~~~~~~~ls~gTDG~DGptdaAGAivd~~t~~~~~~~gld~~~~L~~~DS~~f~~~~~~li~TGp 400 (414)
T d2b8na1 321 GRNQELALSAAIALEGIEGVILCSAGTDGTDGPTDAAGGIVDGSTAKTLKAMGEDPYQYLKNNDSYNALKKSGALLITGP 400 (414)
T ss_dssp CHHHHHHHHHHHHTTTCTTEEEEEEETTSCCSSSSCCEEEEETTHHHHHHHTTCCHHHHHHTTCHHHHHHHTTCEECCCC
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCEECCCC
T ss_conf 64399999999983699996999975478878988775887662799999869999999987786999997699786199
Q ss_pred -------------C
Q ss_conf -------------5
Q 000920 1082 -------------K 1082 (1223)
Q Consensus 1082 -------------~ 1082 (1223)
.
T Consensus 401 TgTNV~Dl~i~li~ 414 (414)
T d2b8na1 401 TGTNVNDLIIGLIV 414 (414)
T ss_dssp CSCCCCEEEEEEEC
T ss_pred CCCCHHHHEEEEEC
T ss_conf 99656350777969
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=31256.74 Aligned_cols=1 Identities=0% Similarity=0.039 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~aFd~i~l~Pr~L~dvs~i 80 (414)
T d1kbia1 1 APGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKV 80 (414)
T ss_dssp CTTCCHHHHHHHHHHHHTCCCGGGCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSC
T ss_pred CCCCCHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCEEECCCCCCCCCC
T ss_conf 99885444556777631599812167999999999986888888887146665099999999997360665335787678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 Dlst~~lG~~l~~P~~Isp~g~~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~~~~~~~~~~~a~~~~~~~~~q~y~~~ 160 (414)
T d1kbia1 81 DISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNS 160 (414)
T ss_dssp BCCEEETTEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCS
T ss_pred CCCEEECCCCCCCCEEECHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHCCCCCC
T ss_conf 88534898417888788745640456822367887764777641365322322346568899872177541011021124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~l~~ra~~ag~~al~~tvD~~~~g~re~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~i~~ 240 (414)
T d1kbia1 161 DRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEE 240 (414)
T ss_dssp SHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf 58889999999987188510123344324651787872556654331444203554553277899985066899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 i~~~~~~~~i~kgi~~~~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viadGGIR~G~D 320 (414)
T d1kbia1 241 LKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTD 320 (414)
T ss_dssp HHHHCSSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHH
T ss_pred HHCCCCCEEEEECCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf 86157752775200006777788743886245223211111112200000024666664111488513885388676789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 VaKALALGAdaVgigrp~L~~la~~G~egv~~~l~~l~~EL~~~M~l~G~~si~eL~~~~l~~~~~~~~~~~~p~~~~~~ 400 (414)
T d1kbia1 321 VLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPDLLDLSTLKARTVGVPNDVLYN 400 (414)
T ss_dssp HHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGGEECTTTTCEECCCCCCHHHH
T ss_pred HHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCCCCCCCCCCCCCCHHHC
T ss_conf 99999758998877689999998446999999999999999999998589997891998834232243367899512210
Q ss_pred -------------C
Q ss_conf -------------5
Q 000920 1082 -------------K 1082 (1223)
Q Consensus 1082 -------------~ 1082 (1223)
.
T Consensus 401 ~~~~~~~~~~~~~~ 414 (414)
T d1kbia1 401 EVYEGPTLTEFEDA 414 (414)
T ss_dssp HHCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCC
T ss_conf 35678775333679
|
| >d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: ALDH-like domain: Gamma-glutamyl phosphate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=31253.24 Aligned_cols=1 Identities=0% Similarity=0.438 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ee~~~a~~~A~~Af~~w~~~s~~eR~~iL~k~a~~l~~~~~eia~~~~~e~gk~~~~~~~e~~~~rl~~~~~~i~~~~~~ 80 (414)
T d1o20a_ 1 DELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMIKA 80 (414)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHH
T ss_conf 97999999999999998629999999999999999997699999999999865886041177787874249999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~p~n~p~~~~~~~~~~alaaGN~vvlKps~~tp~~~~~~~~l~ 160 (414)
T d1o20a_ 81 CETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESRPNVTVETTILALKSGNTILLRGGSDALNSNKAIVSAI 160 (414)
T ss_dssp HHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECCCEEEECCSCTHHHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHCCCHHEECCCCHHCCCCCCCCCCCCHHHHHH
T ss_conf 99999865511233443344332101211221232012315717776514101001365201045600011002034677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~le~gGgn~~viv~~dAd~~~A~ 240 (414)
T d1o20a_ 161 REALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLISFVRDNATVPVLETGVGNCHIFVDESADLKKAV 240 (414)
T ss_dssp HHHHTTSSSCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCSSCBCCCCCCCEEEEECTTSCHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHCCCCCEECCCCCCCCEECCCCCCHHHHH
T ss_conf 76543212432124555543103444123334358699746079999876540344021046987871053335434456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~gq~C~a~~r~~V~~~i~d~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~FgPvl~v~~~ 320 (414)
T d1o20a_ 241 PVIINAKTQRPGTCNAAEKLLVHEKIAKEFLPVIVEELRKHGVEVRGCEKTREIVPDVVPATEDDWPTEYLDLIIAIKVV 320 (414)
T ss_dssp HHHHHHHHSCTTSTTSEEEEEEEHHHHHHHHHHHHHHHHHTTCEEEECHHHHHHSTTSEECCGGGTTCCCCSSEEEEEEE
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEECCCCCCCCEEEEEEEEEEEE
T ss_conf 68875441378643355522010889999999986899976986555465542110000002456770220037999994
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~dEAI~~aN~~~yGLsa~I~T~d~~~a~~~~~~i~~G~V~IN~~~~~~~~~~~g~g~~~G~~~~~~~~~G~~gl~~~t 400 (414)
T d1o20a_ 321 KNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRELT 400 (414)
T ss_dssp SSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCSTTTTTCSCCSCEECSSSSCCEECCTGGGE
T ss_pred CCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHC
T ss_conf 99999999985589998179995899999999983981499991898688888879978156249989987456799849
Q ss_pred -------------C
Q ss_conf -------------5
Q 000920 1082 -------------K 1082 (1223)
Q Consensus 1082 -------------~ 1082 (1223)
.
T Consensus 401 ~~K~vv~~~~~~~~ 414 (414)
T d1o20a_ 401 TYKFVVLGEYHVRE 414 (414)
T ss_dssp EEEEEEECSSCCCC
T ss_pred EEEEEEECCCCCCC
T ss_conf 57799987875378
|
| >d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: NADP-dependent isocitrate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=31251.19 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~~~~~iV~l~GDE~tr~i~~~i~~~~~~~~~di~~~~~d~G~e~~~~tg~~l~~daieaik~~~v~lkG~~~tP~~ 80 (414)
T d1t0la_ 1 MSKKISGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDE 80 (414)
T ss_dssp CCCCEEEEEEEEEECCHHHHHHHHHHHHHTTTTTEEEEEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred CCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC
T ss_conf 98643368779956718999999999999707897752799826789998629967799999998669886678679873
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~s~n~~lR~~~~~~~~~rp~~~~~~~~~~~~~~~d~vvvREnteg~Y~g~e~~~~~~~~~~~~~~~~~ 160 (414)
T d1t0la_ 81 KRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSD 160 (414)
T ss_dssp HHHHHHTCSSCCCCHHHHHHHHHCCEEEEEECCCTTCCCSBTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCEEEEEEEECC
T ss_conf 33330012211010028889862765231126864899876787674367404554425436899779860689985046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~a~~~a~~~r~~v~~~~K~nv~~~t~glfr~~~~eva~~yp~~~~~ 240 (414)
T d1t0la_ 161 GTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE 240 (414)
T ss_dssp CSCCEEEEEEEECSCCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 65310000123467784268776205566788889999998469735875035614445288999999999876330134
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~v~~~~~~~Da~~~~~~~~p~fdVivt~NLfGDILSDl~a~l~GglGl~pSanig~~~~~~~fe~~hg~aP~hGsapd 320 (414)
T d1t0la_ 241 AQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQ 320 (414)
T ss_dssp HTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
T ss_conf 32025666677789874148988728997674530566566562577431210115764334412355555543221001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 iAGk~iANP~A~ILS~amML~~lg~~d~~~~l~~~A~~Ie~Av~~~l~~G~~T~DlgG~~~~~~~~~~~~~lsT~ef~da 400 (414)
T d1t0la_ 321 KGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDK 400 (414)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHSCGGGCCGGGCCCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 37766539099999999999985265643689999999999999999679988231877666665556676589999999
Q ss_pred -------------C
Q ss_conf -------------5
Q 000920 1082 -------------K 1082 (1223)
Q Consensus 1082 -------------~ 1082 (1223)
.
T Consensus 401 vi~~L~~~l~~~~~ 414 (414)
T d1t0la_ 401 LGENLKIKLAQAKL 414 (414)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999998865659
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=100.00 E-value=0 Score=31181.10 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~f~~~~~~~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~~rp~LVVt~n~~~A~qL~~dL~~~l 80 (413)
T d1t5la1 1 EGRFQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFF 80 (413)
T ss_dssp CCCCCCCCSSCCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf 98427705889999888999999999865998589967787489999999999739998999489999999999999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~vIVv~~~a~~~~l~~p~~~~~~~l~l 160 (413)
T d1t5la1 81 PHNAVEYFVSYYDYAQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVIIVASVSCIYGLGSPEEYRELVVSL 160 (413)
T ss_dssp TTSEEEEECCGGGTCCCSEEETTTTEEECCCSCCCHHHHHHHHHHHHHHHHCSCEEEEECGGGGSCCCCHHHHHHTSEEE
T ss_pred CCCCEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHEEEEE
T ss_conf 87745432421211442014743443322345677788888766655203567714653000253257857843105898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~G~~i~~~~l~~~L~~~GY~r~~~V~~~GeFsvRG~IiDIfp~~~~e~PvRIEffgDeIesIr~Fd~~tQrs~~~~~~v 240 (413)
T d1t5la1 161 RVGMEIERNALLRRLVDIQYDRNDIDFRRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHV 240 (413)
T ss_dssp ETTCSCCHHHHHHHHHHTTCEECSSSCCTTEEEECSSEEEECCTTCSSEEEEEEESSSSEEEEEEEETTTCCBCCCCSEE
T ss_pred ECCCHHHHHHHHHHHHHHCCCCCCEEEECCEEEEECCHHHHCCCCCCCCCCCEEEECCHHEEEECCCCCCCCCCCCCCEE
T ss_conf 66862528899999998435103100000205775351642478533564030650301103551135457211243179
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~I~Pa~e~i~~~~~~~~a~~~i~~el~~~~~~~~~~~~~~ea~rl~~~~~~d~e~l~e~~~~~gie~y~~~~~~r~~~~~ 320 (413)
T d1t5la1 241 AIFPASHFVTREEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLALRPPGST 320 (413)
T ss_dssp EECCSSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCCTTGGGGHHHHHTCCTTCC
T ss_pred EEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 96346036269999999999999999999999987785889999998767579999852764444555443204666688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~tLlDY~~~d~l~~iDE~~~~~~q~~~~~~~~~~r~~~l~e~G~~LP~a~dn~pL~~ee~~~~~~~~i~vsatP~~~e~ 400 (413)
T d1t5la1 321 PYTLLDYFPDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDHGFRLPSALDNRPLTFEEFEQKINQIIYVSATPGPYEL 400 (413)
T ss_dssp CCCHHHHSCTTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHHTSSCGGGGGSSCCCHHHHHHHCSEEEEEESSCCHHHH
T ss_pred CCHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCHHH
T ss_conf 73244104787089993626569999999988899899888651657556557976889999864987999579970557
Q ss_pred ------------C
Q ss_conf ------------5
Q 000920 1082 ------------K 1082 (1223)
Q Consensus 1082 ------------~ 1082 (1223)
+
T Consensus 401 ~~~~~~v~q~irp 413 (413)
T d1t5la1 401 EHSPGVVEQIIRP 413 (413)
T ss_dssp HHSSSCEEECCCT
T ss_pred HHCCCEEEEEECC
T ss_conf 7468846886286
|
| >d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Stabilizer of iron transporter SufD family: Stabilizer of iron transporter SufD domain: Stabilizer of iron transporter SufD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=31179.23 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~GlPt~k~E~WKyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf 80 (413)
T d1vh4a_ 1 NALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLVF 80 (413)
T ss_dssp CHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCCCCSEEEEE
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCEEEEE
T ss_conf 97899999998628846299999999999729889987281479879974357765677668002000234568548999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 vnG~~~~~ls~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~LN~a~~~~g~~I~V~~~~~~~~PI~i~~~~~~~~~~~~~~ 160 (413)
T d1vh4a_ 81 VDGRYVPALSDATEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGEEVNT 160 (413)
T ss_dssp ETTEECGGGSCCCTTSSCEEEEESCCTTCCCCSSCCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEEEEECCCSSSCEEE
T ss_pred ECCEECHHCCCCCCCCCEEEECHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCEEEEEECCCCCCCCCC
T ss_conf 89998210056755577288515755404110110012332321025432674125357604541467503644344333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~r~~I~v~ena~v~iiE~~~~~~~~~~~~n~~~ei~l~~nA~l~~~~iq~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 240 (413)
T d1vh4a_ 161 AHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLL 240 (413)
T ss_dssp EEEEEEEEECTTCEEEEEEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEECTTCEEEEEEEEC
T ss_pred CCEEEEEEECCCCHHHHHHHCCCCCCCCCEECCEEEEEECCCCEEEEHHHHHHCCCCCCCCEEEEECCCCCCEEEEECCC
T ss_conf 11145653055202211121145544100002205899526642430334442233421220112003454146532000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 G~~~~r~~~~~~L~G~~a~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~d~s~~vf~G~i~V~~~A~~t~a 320 (413)
T d1vh4a_ 241 GGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDG 320 (413)
T ss_dssp CCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEEEECTTCTTEEE
T ss_pred CCCHHHCCCHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHH
T ss_conf 21100110000112000110011023466422433222320155542041343124666640488653035655225665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~q~~~~llls~~a~~~s~P~Lei~~ddv~~~Hgatvg~id~~~lfYL~sRGi~~~eA~~ll~~gF~~~~~~~~~~~~~~~ 400 (413)
T d1vh4a_ 321 QMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQ 400 (413)
T ss_dssp EEEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHCCCCCCEEEECCEEEEECCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 77665301567744875522899639816994000467898999999976999999999999998999998698299999
Q ss_pred ------------C
Q ss_conf ------------5
Q 000920 1082 ------------K 1082 (1223)
Q Consensus 1082 ------------~ 1082 (1223)
-
T Consensus 401 ~~~~~i~~~l~~~ 413 (413)
T d1vh4a_ 401 QVLARIGQRLPGG 413 (413)
T ss_dssp HHHHHHHTTSTTC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999872489
|
| >d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=31175.85 Aligned_cols=1 Identities=0% Similarity=-0.426 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~ltl~d~d~~gK~VllRvD~NvPi~~g~I~Dd~RI~~~lpTI~~L~~~gak~Vvl~SH~GRP~~~~~~d~~SL~pva~~ 80 (413)
T d1hdia_ 1 NKLTLDKLNVKGKRVVMRVDFNVPMAAAQITNNARIKAAVPSIKFCLDDGAKSVVLMSHLGRPDGSPMPDKYSLQPVAAE 80 (413)
T ss_dssp CBCBGGGSCCTTCEEEEECCCCCCBSSSSBSCCHHHHHHHHHHHHHHHTTCSEEEEECCCSCCCSSCCTTTSCSHHHHHH
T ss_pred CCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98754102868998999931587744990897489999999999999879998999537889999977854587999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 L~~~L~~~V~f~~d~~g~~~~~~i~~l~~geilLLENvRF~~~E~~~~~~~~~~~~~~e~~n~~~f~~~La~l~DvyVND 160 (413)
T d1hdia_ 81 LKSALGKAVLFLKDCVGPAVEKACADPAAGSVILLENLRFHVEEEGKGKDASGNKAAGEPAKIKAFRASLSALGDVYVND 160 (413)
T ss_dssp HHHHHTSCCEECSCSSSHHHHHHHHSCCTTEEEECCCGGGSHHHHTEEECTTSCEEECCHHHHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHCCCEEEECCCCHHHHHHHHHCCCCCEEEEECCHHCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99986886066056513556554320234317980221104211134432011000110243699999876328889953
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 AF~~aHR~haS~~gi~~~~~~~G~LmekEi~~L~~~l~~p~~P~vaIlGGaKvsdKi~vi~~L~~k~d~iiigGgmantf 240 (413)
T d1hdia_ 161 AFGTAHRAHSSMVGVNLPKKAGAFLMKKELNYFAAAAESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTF 240 (413)
T ss_dssp CGGGTTCCCHHHHCCCCSCEEECHHHHHHHHHHHHHHTSCCSSEEEEECCSCSGGGHHHHHHHHTTCSEEEECGGGHHHH
T ss_pred CHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCEEEECCHHHHHH
T ss_conf 42111125762220135642116899999999876540788761699842554338999998875310154035468999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 L~a~~g~~iG~sl~e~~~~~~~~~~~~~~~~~~~~i~lp~d~~~~~~~~~~~~~~~~~~~~~i~~~~~i~DIG~~Ti~~~ 320 (413)
T d1hdia_ 241 LKVLNNMEIGTSLFDEAGKKIVKNLMSKAAANGVKITLPVDFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKY 320 (413)
T ss_dssp HHHHHCCCBTTCCCCTTGGGTHHHHHHHHHHHTCEEECCCEEEEESSSSTTCCEEEEETTTCBCTTCEEEEECHHHHHHH
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHH
T ss_conf 99715974563340322004677777789871984344541354124566555455442113588764431530236788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~I~~aktI~wNGP~GvfE~~~F~~GT~~i~~~ia~~~~~~a~sivGGGdT~aai~~~g~~~~~~hvSTGGGA~L~~L~ 400 (413)
T d1hdia_ 321 SEAVARAKQIVWNGPVGVFEWEAFAQGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNTEDNVSHVSTGGGASLELLE 400 (413)
T ss_dssp HHHHHHCSEEEEESCSSCTTSGGGCHHHHHHHHHHHHHHHTTCEEEECTTHHHHHHHHTTCTTTSSEECSCHHHHHHHHT
T ss_pred HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHC
T ss_conf 88761587799988834566761538999999999985148998999377999999974986798479278799999987
Q ss_pred ------------C
Q ss_conf ------------5
Q 000920 1082 ------------K 1082 (1223)
Q Consensus 1082 ------------~ 1082 (1223)
.
T Consensus 401 G~~LPgi~aL~~~ 413 (413)
T d1hdia_ 401 GKVLPGVDALSNV 413 (413)
T ss_dssp TCCCHHHHTSCBC
T ss_pred CCCCCHHHHHHCC
T ss_conf 9996246352049
|
| >d2qgma1 c.150.1.3 (A:33-445) Succinoglycan biosynthesis protein BC3205 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: EreA/ChaN-like superfamily: EreA/ChaN-like family: EreA-like domain: Succinoglycan biosynthesis protein BC3205 species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=31175.27 Aligned_cols=1 Identities=100% Similarity=1.201 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~i~~~a~pl~~~d~~~~~~DL~~L~~~v~dariV~LGEatHGt~Ef~~~r~~l~r~Lvee~Gf~~vA~E 80 (413)
T d2qgma1 1 SGQSVQKNIVKSIQSQANPLKTIEPSKPFEDLKPLKKMIGNAQYVGLGENTHGSSEIFTMKFRLVKYLVTEMGFTNFAME 80 (413)
T ss_dssp CCSSHHHHHHHHHHHHCEECCCCCTTSCCGGGHHHHHHHTTCSEEEECCSSSCBHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98427789999999846558778989876789999986479749998468667079999999999999997599789992
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~d~~~~~~vn~yV~~g~g~~~~~~~~~w~~~e~~~lv~WlR~~N~~~~~~~~v~f~G~D~~~~~~~s~~~v~~yl~~~~p 160 (413)
T d2qgma1 81 EDWGNGLKLNEYIQTGKGNPREFLKLLYPTDEIIAMIEWMKDYNADPSNKKKIQFIGLDLKALDQGSFNKVIDYVRLHRP 160 (413)
T ss_dssp EEHHHHHHHHHHHHHCCSCGGGTSCTTSCBHHHHHHHHHHHHHHHCTTCCSCCEEEEEECSCCCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCH
T ss_conf 69588999999986388787887787525177999999999970458978842699744465535469999999986196
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~ 240 (413)
T d2qgma1 161 DLLAEVEENYKELSSFTGSIQEYMKLTPKLKEKFKANAERVARLLKDENEQANTEIIPSEYIWAKATASAIEKFTTMLLP 240 (413)
T ss_dssp TSHHHHHHHHHTGGGSCSCHHHHTTSCHHHHHHHHHHHHHHHHHTSCC-----------CHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 78999999974603123478999775176788899999999999997676505432344899999999999999999706
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~RD~~Maenl~~~~~~~~~KiivwAHN~Hi~~~~~~~~~~~~~~G~~L~e~~G~~y~~IG~~~~~G~v~a~~ 320 (413)
T d2qgma1 241 NDYPSIIKLHEQYLADHAMWAQETFGGKTMVWAHNIHIAKGIIDEKLYPYVAGQFLKERLDNNYVTIGSTTTEGNFTLYS 320 (413)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHCSCEEEECCHHHHCSSCSCTTTCSSCHHHHHHHHHGGGEEEEEEEEEEEEEEESC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCEEECCC
T ss_conf 87401377899999999999974789978999554110757565433666589999998488469999873466041257
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~~~~~~~~p~~~~s~e~~l~~~~~~~~~ld~r~~~~~~~~~l~~~r~~r~iG~~y~P~~~~y~~~~~~~~fDa 400 (413)
T d2qgma1 321 EYNPSTGGKITTDTIPQDVKSFNYTLGKVPYKMFLLDNRHLKGQAEKWVKAKRPLLSIGGQILPNSSVYFDTSLLEQFDI 400 (413)
T ss_dssp CC-----CCCEEEECCCCTTSHHHHHHHSSCSEEEEEGGGCCHHHHHHHHSEEEEECCCSCC-----CEEEEEHHHHCSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCHHCCCEEEECCCCCCCCCCCHHHHCCE
T ss_conf 77875566303678999952699997135877467552004535678883711211310244588764446895997978
Q ss_pred ------------C
Q ss_conf ------------5
Q 000920 1082 ------------K 1082 (1223)
Q Consensus 1082 ------------~ 1082 (1223)
+
T Consensus 401 li~i~~ttPa~~~ 413 (413)
T d2qgma1 401 IFHIRKTSPSHIK 413 (413)
T ss_dssp EEEEEEECBCCBC
T ss_pred EEEECCCCCCCCC
T ss_conf 9997146703129
|
| >d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: NADP-dependent isocitrate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=31173.99 Aligned_cols=1 Identities=0% Similarity=0.670 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~ki~v~~pIv~l~GDeit~~~~~~i~~~l~~~~~di~~~~~d~G~~~~~~tg~~l~~eaiea~k~~~aiLkGa~~tP~ 80 (413)
T d1lwda_ 1 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPD 80 (413)
T ss_dssp CCCCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCC
T ss_pred CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCC
T ss_conf 99750305777995486379999999999970678886279970788999874996769999999975977788867997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~s~n~~lR~~ldl~an~RP~~~~~~~~~~~~~~~d~VivREnteg~Y~g~e~~~~~~~~~~i~~~~~ 160 (413)
T d1lwda_ 81 EARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPK 160 (413)
T ss_dssp HHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEET
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCEECCCCCCCEEEEECC
T ss_conf 32235444432210001568976387458721002578876788887727752254443503423226766320577405
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ria~~af~~a~~~~~~vt~v~K~nvl~~~~glf~~~~~eva~~~p~~~~~ 240 (413)
T d1lwda_ 161 DGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFD 240 (413)
T ss_dssp TCCCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 66542233200256652000001332025678999999997159605775046356600479999999999874003564
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~I~~~~~~vd~~~~~lv~~p~~~Vivt~NlfGDIlSDlaa~l~GglGl~pSanig~~~~~~~fe~~HGsap~~ag~~~ 320 (413)
T d1lwda_ 241 KYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQ 320 (413)
T ss_dssp HTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHH
T ss_pred CCEEEEEHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHH
T ss_conf 23799861455555565228988739997563405676677874389777764324787554333346566000000121
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 iagk~iANP~a~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~DlgG~~~~~~~~~~~~~~~sT~ef~d 400 (413)
T d1lwda_ 321 KGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLD 400 (413)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 17765659599999999999973454444579999999999999999779988465887666655555677638999999
Q ss_pred ------------C
Q ss_conf ------------5
Q 000920 1082 ------------K 1082 (1223)
Q Consensus 1082 ------------~ 1082 (1223)
+
T Consensus 401 aV~~~L~~~l~~~ 413 (413)
T d1lwda_ 401 TIKSNLDRALGRQ 413 (413)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999987529
|
| >d1zjca1 e.60.1.1 (A:3-415) Aminopeptidase S, AMPS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Thermophilic metalloprotease-like superfamily: Thermophilic metalloprotease-like family: Thermophilic metalloprotease (M29) domain: Aminopeptidase S, AMPS species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=31173.37 Aligned_cols=1 Identities=0% Similarity=-0.959 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~f~~~L~k~A~llV~~~l~vqkGe~VlI~a~~~~~~lvral~~~a~~aGA~pV~v~~~d~~i~r~~~~~~~~e~l~~~e~ 80 (413)
T d1zjca1 1 NYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRLKFENESVEHFANHEI 80 (413)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHHHHSCHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCHHHHCCCCC
T ss_conf 97899999999999983068999989999567439999999999998699648995087899999871899668353202
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~a~i~i~~~~p~~l~~vd~~ki~~~~~a~~~~~k~~~~~~~~~~~~W~i~~~Pt~a~A~~a~~~l 160 (413)
T d1zjca1 81 KSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPEL 160 (413)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEECCCTTTTTTSCHHHHHHHHHHHHHHTHHHHHHHHTTCSCEEEEECCCHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCC
T ss_conf 56679999999865884899726895242037989999999999999899999986476566999568767776645899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~e~~~~~~d~if~a~~lD~~dpv~~w~~~~~~l~~~~~~L~~~~~~~~~~~~~gTDLt~~l~~~~~~~~~~~~~~~~~ 240 (413)
T d1zjca1 161 SVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKE 240 (413)
T ss_dssp CHHHHHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEETTEEEEEEECTTBCCBCSEEEGGGTS
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCEEEECCCCCCCCCC
T ss_conf 87999999999999750788051799999999999999999854072479943898407999358737716875236777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~NlP~gEvft~P~~~~~~G~i~~~~~~~~~G~~~~~i~l~f~~G~vv~~~~~~~~~~l~~~l~~d~~a~~~gE~~i 320 (413)
T d1zjca1 241 QAFIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDLINTDEGSRRLGEVAL 320 (413)
T ss_dssp SEEESBSSCCCEEECEEEEEEEEEEECSSCEEETTEEEEEEEEEEETTEEEEEEEEESHHHHHHHHTSSGGGGSEEEEEE
T ss_pred CCCCCCCCCCCEEEEECCCCEEEEEEECEECCCCCEECCCCEEEEECCEEEEEECCCHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 76648899800686131586137999782526298832481899989999999747659999876404866536767753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 g~n~~~~~~~~~~~~~~L~DEkgt~H~a~G~~Y~~~~~~~~~~~~~~~~~~G~n~s~~H~D~~i~~~~~~i~gv~~dG~~ 400 (413)
T d1zjca1 321 VPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSK 400 (413)
T ss_dssp CCSSSTTGGGCCCCSSHHHHTTTSCEEEEECCCGGGBTTGGGCCHHHHHHHTCCCCSCEEEEECCCTTCEEEEECTTSCE
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCHHHCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCEEEEEEEECCCE
T ss_conf 16886543435442451587489744667756421113665578145401798676457876347871568999818978
Q ss_pred ------------C
Q ss_conf ------------5
Q 000920 1082 ------------K 1082 (1223)
Q Consensus 1082 ------------~ 1082 (1223)
.
T Consensus 401 ~~I~~~G~f~~~~ 413 (413)
T d1zjca1 401 ELVFENGNWASTF 413 (413)
T ss_dssp EEEEETTEECTTC
T ss_pred EEEEECCEECCCC
T ss_conf 8999899976769
|
| >d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Bacterial glucoamylase C-terminal domain-like domain: Glucodextranase, domain A species: Arthrobacter globiformis [TaxId: 1665]
Probab=100.00 E-value=0 Score=31168.90 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~S~l~lk~~~~~~~~GaiiAapt~~~pe~~~~~~n~d~Yry~W~RDaa~~~~al~~~G~~~~a~~~ 80 (413)
T d1ulva1 1 PATSLTGALRTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGDEEAAARG 80 (413)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBCSSCCCTTCSBCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 98657889999999999999973468999848875888887666775689871166180599999999986998999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~l~~~~~~~~G~~~~~y~~dg~~~~~~~Q~D~~g~~l~~~~~~~~~~~~~~~~~i~~a~~~l~~~~~~~~~~lWEe~~ 160 (413)
T d1ulva1 81 VEWLFTYQQQPDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGRTDAGFYRNELKPAADYLVAAGPKTPQERWEETG 160 (413)
T ss_dssp HHHHHHHTCCTTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTCCCHHHHHHTHHHHHHHHHHHCSCBSBCTTSSCC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999985079996056546687767776763038999999999853001678999999999999738898745454678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 g~~~~T~~~~~~aL~~aa~la~~~gd~~~a~~~~~~A~~i~~~i~~~~~~~~~~~~~~~y~~r~~~~~~~~~~~~~~~~~ 240 (413)
T d1ulva1 161 GYSTSTLASQIAALAAAADIAGKNGDAGSAAVYRATADEWQRSTEKWMFTTNGPVGDGKYYLRISATGNPNDGATRDWGN 240 (413)
T ss_dssp BEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTHHHHHEESSCSSTTSCEECSEESSSCTTSCCEEECST
T ss_pred CCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf 85431189999999999999998398167889999999999999996018655623321011036666654320000123
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~vDas~l~~~~~g~~~~~d~r~~~t~~~i~~~L~~~~~~g~~~~Ry~~D~y~~~~~g~~~~~~~i~t~W~~ 320 (413)
T d1ulva1 241 GAGVHPENAVLDGGFLEFVRLGVKAPADPYVADSLAETDASISQETPGGRMWHRYTYDGYGEKADGSPWDGTGIGRLWPL 320 (413)
T ss_dssp TCCEEEGGGCCBGGGGHHHHTTSSCTTCHHHHHHHHHHHHHHEEEETTEEEECSBTTCCCSCCTTSCCCSSCCCCCBCTH
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 45666677765788763112178798887899999999998546778777420024667657788887633112789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~a~~~~g~~~~A~~ll~~l~~~~~~~G~LpEqv~~~~~~~~~~~~~~~~~~sa~PlaWS~A~~i~l~~~l~~g~~~ 400 (413)
T d1ulva1 321 LSGERGEYALANGQDALPYLETMHSAANAGYMIPEQVWDRDEPTSYGHELGRSTGSASPLSWAMAQYVRLAAGVKAGAPV 400 (413)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHTSCTTCCCCSCBBCCSSCCSSCCCBTSBCSSCBSCHHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998648788999999999976687886563016788830025778999888776374789999999998669976
Q ss_pred ------------C
Q ss_conf ------------5
Q 000920 1082 ------------K 1082 (1223)
Q Consensus 1082 ------------~ 1082 (1223)
-
T Consensus 401 ~~~~~~~~~~~~~ 413 (413)
T d1ulva1 401 ETPQNVAARYAAG 413 (413)
T ss_dssp SSCHHHHHHHTSS
T ss_pred CCCHHHHHHHHCC
T ss_conf 6762899874149
|
| >d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium (Salmonella typhimurium) [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Transmembrane beta-barrels superfamily: Porins family: Maltoporin-like domain: Sucrose-specific porin species: Enterobacterium (Salmonella typhimurium) [TaxId: 90371]
Probab=100.00 E-value=0 Score=31168.31 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~GfeFhGY~RsG~g~s~~g~~~~~~~~~~~~~~~~g~~gRLGNE~d~y~El~l~~~~~~~~g~~~~~~~~~a~~~~~~~d 80 (413)
T d1a0tp_ 1 SGFEFHGYARSGVIMNDSGASTKSGAYITPAGETGGAIGRLGNQADTYVEMNLEHKQTLDNGATTRFKVMVADGQTSYND 80 (413)
T ss_dssp CCEEEEEEEEEECCEETTSSCCCCCTTCSGGGGGTCCCCCTTCCCSEEEEEEEEEEEECTTSCEEEEEEEEEEEECCCSS
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCC
T ss_conf 95168527785734847898654563216565666565424664351798883457781599599999997115655578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~q~yve~~nl~~f~~~~~~a~~WaGkR~y~r~~dIhi~D~~y~~~sG~GaGieni~lG~g~~~~~~~~~~ 160 (413)
T d1a0tp_ 81 WTASTSDLNVRQAFVELGNLPTFAGPFKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDVKWNDGLRSNFSLYGR 160 (413)
T ss_dssp CCGGGCCCEEEEEEEEEESCTTCCGGGTTCEEEEEEEECTTCEEEGGGTEEEEBCEEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred CCCCCCCCHHEEEEHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCEECEEEEECCCCCEEEEEEEEC
T ss_conf 75666530110303464586434677998639744420366567542310468658857564721037884688999942
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~~G~~~G~nk~~ 240 (413)
T d1a0tp_ 161 NFGDIDDSSNSVQNYILTMNHFAGPLQMMVSGLRAKDNDERKDSNGNLAKGDAANTGVHALLGLHNDSFYGLRDGSSKTA 240 (413)
T ss_dssp EEECTTCGGGEEEEEEEEEEEEETTEEEEEEEEECTTGGGCBCSSSSBSCSSCCSEEEEEEEEEEEEESTTSSEEEEEEE
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEEEECCCEECCCCCEEEEH
T ss_conf 56776667875111687531157379999964303773443215654346764465308999996142000358635151
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 lQyg~G~~a~~~~~~~~~~~~~~~~s~Rl~~~G~~~~~~~~~~~~~~~y~~~~d~~~~~~~~~~~s~gvRP~y~~~~~~~ 320 (413)
T d1a0tp_ 241 LLYGHGLGAEVKGIGSDGALRPGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRYADGDSYQWATFNLRLIQAINQNFA 320 (413)
T ss_dssp EEEEEETTCSCSBTTCCTTCCTTCEEEEEEEEEEEESSSSEEEEEEEEEEEEESSSSTTCEEEEEEEEEEEEEESSSSEE
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEECCCCEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCEE
T ss_conf 62375715577565787862799508999986644135876776668999851667789970799999888589668689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~E~gy~~~~~~~~g~~~~~~~~~~~~K~TlA~~~~~g~~~~fwsRPeiR~faTY~~w~~~~~~~~~~~~~~~~~~~~~ 400 (413)
T d1a0tp_ 321 LAYEGSYQYMDLKPEGYNDRQAVNGSFYKLTFAPTFKVGSIGDFFSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSG 400 (413)
T ss_dssp EEEEEEEEEEEEECTTGGGCCCEEEEEEEEEEEEEEESSCTTCTTCCCEEEEEEEEEEECGGGGGSCSSSSTTBTTBCSS
T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCHHHCCCCCCCCCCCCCCCCC
T ss_conf 99998886640344675366666783589999763132897876779789999999805412200224565454677888
Q ss_pred ------------C
Q ss_conf ------------5
Q 000920 1082 ------------K 1082 (1223)
Q Consensus 1082 ------------~ 1082 (1223)
-
T Consensus 401 ~~~~fGvQ~E~Ww 413 (413)
T d1a0tp_ 401 GEWSFGVQMETWF 413 (413)
T ss_dssp CEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEC
T ss_conf 8789999998769
|
| >d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Amidase signature (AS) enzymes superfamily: Amidase signature (AS) enzymes family: Amidase signature (AS) enzymes domain: Malonamidase E2 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=100.00 E-value=0 Score=31101.78 Aligned_cols=1 Identities=100% Similarity=-0.095 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~ls~~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~lna~~~~~~~~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~ 80 (412)
T d1ocka_ 1 MISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYR 80 (412)
T ss_dssp CCCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCCCCSSSTTTTCEEEEETTBCCSSSCCCTTSGGGT
T ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHH
T ss_conf 98789999999869998999999999999976961598174439860766798688879987661778974166486661
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~a~~V~~L~~aGaii~gkt~~~e~~~~~~~~~~np~~~~~~~GgSSgG~aaava~g~~~~a~GsDtgGSiR~PA 160 (412)
T d1ocka_ 81 GWQPRSDAPVVMMLKRAGATIIGKTTTTAFASRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPA 160 (412)
T ss_dssp TCCCSSCCHHHHHHHHTTCEEEEEECCCGGGSSCCCSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHH
T ss_pred CCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
T ss_conf 78875301477652012433000001666502566543334466666777678761111034566557654023441015
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 a~cGi~GlKPT~G~v~~~g~~~~s~~~dt~Gp~arsv~Dl~~~l~~i~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 240 (412)
T d1ocka_ 161 AYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAE 240 (412)
T ss_dssp HHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECCCGGGCCCCHHHH
T ss_pred HHHCCHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 55302101344100123344443201111223445188999999864288721244776444334432323345106777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~a~~~L~~~G~~v~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 320 (412)
T d1ocka_ 241 QGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARR 320 (412)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHSGGGSCHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 78888888888764023223453102333455541125789887777640242321245544333210122210001124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~r~~~~~~~~~~f~~~D~ll~Pt~p~~ap~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQiig~~~~D~~lL 400 (412)
T d1ocka_ 321 IGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGDPRYNRLWTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHAL 400 (412)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCCCCTTTHHHHHHCCCEEEEEEEEETTEEEEEEEEECTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCHHHHH
T ss_conf 67899999999982799999689988776300045687577599999789849983668999607688889999899999
Q ss_pred -----------C
Q ss_conf -----------5
Q 000920 1082 -----------K 1082 (1223)
Q Consensus 1082 -----------~ 1082 (1223)
+
T Consensus 401 ~~A~~~E~alg~ 412 (412)
T d1ocka_ 401 ATAWFLEDALAK 412 (412)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998583
|
| >d1yzya1 c.146.1.1 (A:1-412) Hypothetical protein HI1011 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: YgbK-like superfamily: YgbK-like family: YgbK-like domain: Hypothetical protein HI1011 species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=0 Score=31099.33 Aligned_cols=1 Identities=0% Similarity=-2.154 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 i~iIADDlTGA~dt~~~~~~~G~~t~~~~~~~~~~~~~~~dvv~i~t~SR~l~~~eA~~~v~~~~~~l~~~~~~~~~~Kv 80 (412)
T d1yzya1 1 LGVIADDFTGASDIASFLVENGLSTVQMNGVPTQSLNSKVDAIVISLKSRSNPVNEAIEQSLRAYQWLKENGCTQFYFKY 80 (412)
T ss_dssp CEEEESSHHHHHHHHHHHHTTTCCEEEEESCCSSCCCSCCSEEEEECCCSSSCHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 96895273528999999998799099971788500057899899985778999999999999999999863897158999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~s~~DStlRGnig~Ei~a~~~~~~~~~~~v~PA~P~~gR~t~~G~~~v~g~pl~~t~~a~dP~tP~~~s~l~~ll~~qs~ 160 (412)
T d1yzya1 81 CSTFDSTAKGNIGPVTDALLDELNEDFTVITPALPVNGRTIFNGYLFVGDVLLSESGMKNHPITPMVDANLMRLMDAQAK 160 (412)
T ss_dssp CTTCCCCTTCTHHHHHHHHHHHHTCCCEEECCCBGGGTEEEETTEEEETTEEGGGSGGGGCSSSCCCCCBHHHHHHHHCS
T ss_pred EECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCEEEECCEECCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 73133777678589999999763997699946756577699998999898875676100288989775027777555237
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~v~~i~~~~v~~~~~~~~~~l~~~~~~~~~~vv~Da~t~~dL~~ia~a~~~~~~~~GsaGla~~l~~~~~~~~~~~~~~ 240 (412)
T d1yzya1 161 GKTGLVAYADVIKGASRVQECFAELKAQGYRYAVVDAVDNSQLEVLAEAVADFKLVTGGSGLGAYMAARLSGGKKGTNAF 240 (412)
T ss_dssp SCEEEECHHHHTTCHHHHHHHHHHHHHTTCSEEEECBSSTHHHHHHHHHTTTCSEEEESHHHHHHHHHHHHTSCCGGGCC
T ss_pred CCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCCCCC
T ss_conf 85354219988645067999999876179866998369889999999973288079954407778887512466654345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~Lvv~GS~s~~T~~Ql~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 320 (412)
T d1yzya1 241 TPTKGKTVVLSGSCSVMTNKQVEKYREKAPHFQLDVEQAIHNENYIEQLYQWVIANLDSEFAPMVYATVPPDALKAIQHQ 320 (412)
T ss_dssp CCCSCCEEEEECCCSHHHHHHHHHHTTTSCEEECCHHHHHHCTTHHHHHHHHHHTTTTSSSCCEEECCCCHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
T ss_conf 78888679998267488999999998509859963899617817999999999998736997588843764555566543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~~i~~~l~~~~~~l~~~~~~~lv~tGGdTa~av~~~Lg~~~l~~~~ei~pGvp~~~~~~~gl~ivtK~G~fG~ 400 (412)
T d1yzya1 321 FGVDQASHAIENTFAKLAAKLKQYGVTNFITAGGETSSIVVQELGFTGFHIGKQIAPGVPWLKAVEEDIFLALKSGNFGK 400 (412)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEESHHHHHHHHHHHTCCEEEEEEEEETTEEEEEESSSSCEEEEECTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCC
T ss_conf 01677999999999999999875587869992639999999975998666757426982079766998079997898898
Q ss_pred -----------C
Q ss_conf -----------5
Q 000920 1082 -----------K 1082 (1223)
Q Consensus 1082 -----------~ 1082 (1223)
.
T Consensus 401 ~D~~~~a~~~~~ 412 (412)
T d1yzya1 401 EDFFEYAQGMFL 412 (412)
T ss_dssp TTHHHHHHHTTC
T ss_pred HHHHHHHHHHHC
T ss_conf 569999999759
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=0 Score=31096.08 Aligned_cols=1 Identities=0% Similarity=0.670 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~s~~~~~~~~~~~~i~~l~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lr 80 (412)
T d1ajsa_ 1 APPSVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFR 80 (412)
T ss_dssp CCCCTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHH
T ss_pred CCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 99584440876899769999999836899996884178875888999886899999999973787688889977789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 eaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~ 160 (412)
T d1ajsa_ 81 TCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRY 160 (412)
T ss_dssp HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEEC
T ss_pred HHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECC
T ss_conf 99999985157843245662230365305678899999988764047998989994786331689999859927874223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~ 240 (412)
T d1ajsa_ 161 WDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAI 240 (412)
T ss_dssp EETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHH
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECHHHHHHHCCCCCCCHHHH
T ss_conf 36233554378999999725677389995589998687899999999999986389789830765654059865651566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (412)
T d1ajsa_ 241 RYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWT 320 (412)
T ss_dssp HHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 65444124321234663223577777345445616788999999999998631535641689999999853888899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls~~~v~~L~~e~gV~~vpg~Ri~~ag~~~~~i~~~ 400 (412)
T d1ajsa_ 321 GNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYV 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTSEEEGGGCCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHCCEEEECCCEEEECCCCHHHHHHH
T ss_conf 99999999999999999999998489887036658975798459899999999985999981898688336988889999
Q ss_pred -----------C
Q ss_conf -----------5
Q 000920 1082 -----------K 1082 (1223)
Q Consensus 1082 -----------~ 1082 (1223)
+
T Consensus 401 a~aI~~av~~~~ 412 (412)
T d1ajsa_ 401 ATSIHEAVTKIQ 412 (412)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999639
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=0 Score=31095.95 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~ 80 (412)
T d1yaaa_ 1 SATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTS 80 (412)
T ss_dssp CTTTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHH
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 94734458747998699999998467898968830677748889988868999999999728654777899877899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~ 160 (412)
T d1yaaa_ 81 NAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKS 160 (412)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTE
T ss_pred HHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHCCCCEECCCCCCCCCCC
T ss_conf 99999723447665666526871442046799999987503899877246435740679999859910105633334344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~ 240 (412)
T d1yaaa_ 161 LDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKL 240 (412)
T ss_dssp ECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHT
T ss_pred CCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEEECCCCCCCCCHHHHHHHHHCC
T ss_conf 21101000124578751799944899985445899999999866114887974520010000588656524432223212
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 320 (412)
T d1yaaa_ 241 STVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWH 320 (412)
T ss_dssp TTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH
T ss_conf 46887599982577645676760799975056666788888888889999987736797688999999706847789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls~e~~~~L~~e~~V~~~~g~Ris~~g~~~~~i~~l 400 (412)
T d1yaaa_ 321 KDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYV 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHH
T ss_conf 89999999999999999999997289888753689952798229699999999996788878988798515988889999
Q ss_pred -----------C
Q ss_conf -----------5
Q 000920 1082 -----------K 1082 (1223)
Q Consensus 1082 -----------~ 1082 (1223)
.
T Consensus 401 ~~ai~~v~k~~~ 412 (412)
T d1yaaa_ 401 AKAIDEVVRFYA 412 (412)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHC
T ss_conf 999999998509
|
| >d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Arginine deiminase domain: Arginine deiminase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=0 Score=31095.14 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~v~sE~g~Lk~Viv~~Pg~e~~~l~p~~~~~~lf~~~~~~~~a~~eh~~f~~~L~~~Gv~V~~l~~~l~e~~~~~~~ 80 (412)
T d1rxxa_ 1 TKLGVHSEAGKLRKVMVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEA 80 (412)
T ss_dssp CCSEECCSSSCEEEEEECCCCHHHHTCCTTTTGGGTCSCCCCHHHHHHHHHHHHHHHHTTTCEEEEHHHHHHHHTTSHHH
T ss_pred CCCCCCCCCCCCEEEEECCCCHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCHHH
T ss_conf 97753777100007896698388773690015664367788999999999999999997798899705768877349588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plpn~~F~R 160 (412)
T d1rxxa_ 81 LKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNTQFTR 160 (412)
T ss_dssp HHHHHHHHSCHHHHCTTTHHHHHHHHHTSCHHHHHHHHHHCEEGGGSCSCHHHHHHHHHHHHSCCCCEEECCCGGGGCTT
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHEECC
T ss_conf 99999875032334655899999998708989999998626421003444332112211000356533578862121315
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 D~~~~i~~gvii~~m~~~~R~~E~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~EGGDvl~~g~~~l~~g~s~RTn 240 (412)
T d1rxxa_ 161 DTTCWIYGGVTLNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVMPIGNGVVLIGMGERSS 240 (412)
T ss_dssp TTEEECSSEEEECCCSSGGGHHHHHHHHHHHHHCHHHHTSCCEEEECCTTSCCTTCCCCGGGEEEEETTEEEEEESSSSC
T ss_pred CCCCEECCCEEECCCCCHHHCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCC
T ss_conf 77534669789668997365436799999998580220576310147655547766042560899679689999431050
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~gi~~L~~~l~~~~~~~~v~~~~~p~~~~~~HLDt~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (412)
T d1rxxa_ 241 RQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPEVVKEIVPFSLRPDPSSPYGMNIRREEKTF 320 (412)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEECCC--CCCCHHHHEEEEETTEEEECHHHHTTCEEEEEEECTTSTTSEEEEECSSCH
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCEEEECCCCEEEEEHHHCCCCCCEEEECCCCCCCCCEEECCCCCH
T ss_conf 99999999986642806775502678765420025427751798599831242754430442156655551010254317
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~l~~~l~~~~~~~i~~~~d~~~~~~e~~~~~~N~L~l~p~~Vi~~~~~~~~~~~L~~~Gi~vi~v~~~el~~~gGg~h 400 (412)
T d1rxxa_ 321 LEVVAESLGLKKLRVVETGGNSFAAEREQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGH 400 (412)
T ss_dssp HHHHHHHTTCSCCEEEECCCSCC--CCSSCCCCCCCEEEETTEEEEETTCHHHHHHHHHTTCEEEEECCTTTTSSSCCTT
T ss_pred HHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCEEEEECCCEEEEECCCHHHHHHHHHCCCEEEEECHHHHHCCCCCCE
T ss_conf 89999971898707955798525555666406520899679989984889999999997899899966567413798867
Q ss_pred -----------C
Q ss_conf -----------5
Q 000920 1082 -----------K 1082 (1223)
Q Consensus 1082 -----------~ 1082 (1223)
-
T Consensus 401 C~T~pl~Re~i~ 412 (412)
T d1rxxa_ 401 CMTCPIVRDPID 412 (412)
T ss_dssp TTCEEEEECCCC
T ss_pred ECCCCCCCCCCC
T ss_conf 887034627999
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=0 Score=31094.11 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~~~~~~~~~~pir~~~~~~~~~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LRea 80 (412)
T d1bw0a_ 1 WDVSMSNHAGLVFNPIRTVSDNAKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREA 80 (412)
T ss_dssp CCCCCCHHHHTCCCHHHHHHHTCCCCCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHH
T ss_pred CCCCHHHCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 98781234568852899999856777799984788697899999852129999999998628777788998688999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~ 160 (412)
T d1bw0a_ 81 VATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDW 160 (412)
T ss_dssp HHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTT
T ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 99999975475435687888886999446222025666543114432046411330144455405864222332223333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T d1bw0a_ 161 EADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTV 240 (412)
T ss_dssp EECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSC
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 12467887653111222222334333332201443023211222377666520217875447888764100001223433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 320 (412)
T d1bw0a_ 241 PRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAM 320 (412)
T ss_dssp CEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 11311555755756877743201240433003555554034553347750343202222333222333322110278999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~g~iRis~~~~~e~l~eal 400 (412)
T d1bw0a_ 321 YLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYREAV 400 (412)
T ss_dssp HHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHH
T ss_pred HHHHHHHHHCCCEECCCCCCEEEEEECCHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHHHHH
T ss_conf 99999987349254378971499995782343788899999999998699999966214899939999738999999999
Q ss_pred -----------C
Q ss_conf -----------5
Q 000920 1082 -----------K 1082 (1223)
Q Consensus 1082 -----------~ 1082 (1223)
.
T Consensus 401 ~Rl~~~l~~~~~ 412 (412)
T d1bw0a_ 401 ERIKAFCQRHAA 412 (412)
T ss_dssp HHHHHHHHHHBC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999986179
|
| >d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycoside hydrolase/deacetylase family: AmyC N-terminal domain-like domain: Hypothetical protein TT1467, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=31093.91 Aligned_cols=1 Identities=0% Similarity=-1.723 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~lalvlH~HqP~vr~~~~~~~~e~w~~~a~~e~YlPll~~~~~l~~~~~~~k~t~~lsP~LleqL~D~~l~~~f~~~l 80 (412)
T d1ufaa2 1 MARFALVLHAHLPYVRAHGMWPFGEETLYEAMAETYLPLIRVLERLRAEGVEAPFTLGITPILAEQLADARIKEGFWAYA 80 (412)
T ss_dssp CEEEEEEEEECCCCCTTSCSTTTSHHHHHHHHHHTHHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHCHHHHHHHHHHH
T ss_conf 96379998257876568987874245999999998888999999998428983399997789999850878888889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~r~L~~~G~vEl~~~~y~H~ilpll~~~~~~~~ 160 (412)
T d1ufaa2 81 KDRLERAQGDYQRYRGTALEASARHQVAFWELTLDHFQRLSGDLVAAFRKAEEGGQVELITSNATHGYSPLLGYDEALWA 160 (412)
T ss_dssp HHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSEEEEEECTTCBCGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCCHHHHHH
T ss_conf 99998750556532340667888888999999999999965458999999997598688835412333321796799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 Qi~~~~~~~~~~fG~~P~G~W~~E~a~s~~~l~~~~~~g~~~~~~~gl~~iL~~~Gi~y~~~d~~~l~~~~~~~~~~~~~ 240 (412)
T d1ufaa2 161 QIKTGVSTYRRHFAKDPTGFWLPEMAYRPKGPWKPPVEGPPEGVRPGVDELLMRAGIRYTFVDAHLVQGGEPLSPYGEAA 240 (412)
T ss_dssp HHHHHHHHHHHHHSSCCCBEECGGGCBCCSEEECCSSSSSCCEEECCHHHHHHHTTCCEEEECHHHHHCSCCCCC-----
T ss_pred HHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEECHHHHHCCCCCCCCCCCC
T ss_conf 99999999999759998867674222044113433321442102452889999739978997749985078766555556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~y~~~~~~~~v~~ffRD~~lSd~I~~~~~Gf~~~~~~~e~a~~d~~~~l~~~r~t~~~~~~~~~~~~Dgen 320 (412)
T d1ufaa2 241 LGPVESQEATYHVHELESGLRVLARNPETTLQVWSADYGYPGEGLYREFHRKDPLSGLHHWRVTHRKADLAEKAPYDPEA 320 (412)
T ss_dssp ---CCCCGGGGSCEECTTSCEEEEBCHHHHHHHHCTTTSGGGSTTSBCSSCCCTTTCCCCEECCCSSCCGGGCEECCHHH
T ss_pred CCCCCCCCCCEEEECCCCEEEEEECCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 67533345650330489738999668777546332326988765356665221334489987113467855361068899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 awe~~~~~a~~Fl~~l~~~~~~~~~~ivv~~~D~ElFGhww~eg~~fL~~l~~~l~~~~~i~~tT~se~l~~p~~~v~lp 400 (412)
T d1ufaa2 321 AFAKTEEHARHFVGLLERLAGRHPEGVILSPYDAELFGHWWYEGVAWLEAVLRLLAQNPKVRPVTAREAVQGPAVRTALP 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGBTTTBTTHHHHHHHHHHHHHTCSSEEECCHHHHTCSCCEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHCCCCEEECC
T ss_conf 99998977999999999875058887589445588604024310999999999863189839976999982889714258
Q ss_pred -----------C
Q ss_conf -----------5
Q 000920 1082 -----------K 1082 (1223)
Q Consensus 1082 -----------~ 1082 (1223)
.
T Consensus 401 ~sSWg~gg~~~v 412 (412)
T d1ufaa2 401 EGSWGRGGDHRV 412 (412)
T ss_dssp SBCSSGGGSSTT
T ss_pred CCCCCCCCCCCC
T ss_conf 988767898889
|
| >d1t3ca_ d.92.1.7 (A:) Botulinum neurotoxin {Clostridium botulinum, serotype E [TaxId: 1491]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Clostridium neurotoxins, catalytic domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype E [TaxId: 1491]
Probab=100.00 E-value=0 Score=31023.16 Aligned_cols=1 Identities=0% Similarity=-1.456 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~InnFNyndPVnn~~I~~~r~~~~~~~~KAFkI~~nIWViPER~~~~t~p~d~~pp~~~~~~d~~yYDpnyLsTD~EKD 80 (411)
T d1t3ca_ 1 PKINSFNYNDPVNDRTILYIKPGGCQEFYKSFNIMKNIWIIPERNVIGTTPQDFHPPTSLKNGDSSYYDPNYLQSDEEKD 80 (411)
T ss_dssp CCCCCCCTTSCCCSSSEEEEECTTCSSCEEEEEEETTEEEEEEECCTTCCGGGGSCSCSTTTTSSCCBCTTTTCSHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHH
T ss_conf 97666667898899728999448899712435620776875111247778212489732346887513753145621788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~FLk~iIKLf~RINs~~~G~~LL~~Is~aiPf~G~~~t~~~ef~~~~~~~~n~~~s~~~~~~~~~NlvIfGPg~nI~en~ 160 (411)
T d1t3ca_ 81 RFLKIVTKIFNRINNNLSGGILLEELSKANPYLGNDNTPDNQFHIGDASAVEIKFSNGSQDILLPNVIIMGAEPDLFETN 160 (411)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHTCCCCSCCTTSCTTSCCCCTTTCEEEECTTSCEEEECCSEEEEECCSBTTCCE
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCEEEEECCCCCHHHEEEEEEEECCCCCCCCCC
T ss_conf 99999999999863745799999999736875789999853311355430356336885201310269987885425665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~n~~~s~nGfGt~~~i~F~P~~t~~f~~~~~~~F~~DPAl~L~heLIhsLh~LYGIk~i~~~~~i~~~~~~~~ 240 (411)
T d1t3ca_ 161 SSNISLRNNYMPSNHGFGSIAIVTFSPEYSFRFNDNSMNEFIQDPALTLMHQLIHSLHGLYGAKGITTKYTITQKQNPLI 240 (411)
T ss_dssp EEECCCGGGCCGGGTTSCCCEEEECCTTEEEEEECTTSCEEECCHHHHHHHHHHHHHHHHTTCCTTTTTCEECTTTTTCC
T ss_pred CEEEEECCCCCHHHCCCCEEEEEEECCCEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 03787405776322476504799976634786136777714248899999999999987618667887642101000556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~v~~eelltfGG~D~~~I~t~~~~~~~~~~l~~f~~ia~~l~~i~~~n~~~n~yK~~~~~Ky~~~~d~~g~~~vN~ 320 (411)
T d1t3ca_ 241 TNIRGTNIEEFLTFGGTDLNIITSAQSNDIYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNI 320 (411)
T ss_dssp SCTTCEEHHHHHHHCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTSCCSCGGGHHHHHHHHHHTTEEECTTSCEEECH
T ss_pred HCCCCCCCEEEEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEH
T ss_conf 41477554000300687800048711677999999999999999888627884178999999998577657887288548
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~kF~~~y~~l~~fTE~~~~~~f~v~~r~~Y~~~y~~~~~~nlldd~iYti~eGFNi~nl~~n~~GQN~~~N~~~~~~i~~ 400 (411)
T d1t3ca_ 321 NKFNDIFKKLYSFTEFDLATKFQVKCRQTYIGQYKYFKLSNLLNDSIYNISEGYNINNLKVNFRGQNANLNPRIITPITG 400 (411)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTCCCCSCSCSCCCEEEESCTTCTTTCBTTTBTCCGGGGGGGGGGBTTTSGGGEECCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 99999999986223344668886887776886357632255467653221467433432001367653238465346785
Q ss_pred ----------C
Q ss_conf ----------5
Q 000920 1082 ----------K 1082 (1223)
Q Consensus 1082 ----------~ 1082 (1223)
.
T Consensus 401 ~glv~~~~~~C 411 (411)
T d1t3ca_ 401 RGLVKKIIRFC 411 (411)
T ss_dssp TTHHHHHSSCC
T ss_pred CHHHHHHHHCC
T ss_conf 20588776339
|
| >d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: N-acylglucosamine (NAG) epimerase domain: Putative NAG isomerase YihS species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=31021.51 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~r~wL~~~~~~l~~~~~~~~~~gGF~~l~~dG~~~~~~~k~~~~~aR~~~~fs~a~~~g~~~~~~~A~~g~~f 80 (411)
T d2afaa1 1 KWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKEEMGTHLWITARMLHVYSVAASMGRPGAYDLVDHGIKA 80 (411)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHGGGEETTEECCBCTTSCBCGGGCEEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 97687777899999999999864617789972346899897888772147768999999999975897799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 L~~~~~d~~~Gg~~~~~~~~~~~d~~k~~Y~~AF~l~ala~~~~~g~~~~~~~a~~~~~~l~~~~~~~~~G~~~~~~~~~ 160 (411)
T d2afaa1 81 MNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEA 160 (411)
T ss_dssp TTTTTBCTTTSSBCSEECSSSEEECCEEHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTT
T ss_pred HHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCC
T ss_conf 99856767998489862699986532104889999999999988588889999999999999996075689743220555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~n~~mhl~eA~~~l~~at~d~~~~~~a~~~~~~~~~~~~~~~~~~l~E~f~~dw~~~~~~~~~~~~~~~~~ 240 (411)
T d2afaa1 161 FSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRA 240 (411)
T ss_dssp SCCBCSCEEHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHCCCCCGGGTTCCCCEECTTCCBCTTTTTTCTTCCTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 67754424467448999999999884288999999999999888765156678411112666541443301264324564
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~pGH~iE~aWlll~~~~~~~~~~~~~~~~~l~~A~~l~~~~~~~g~d~d~~gg~~~~~~~~g~~~~~~k~~W~qaEa 320 (411)
T d2afaa1 241 YGGTPGHWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEA 320 (411)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHBSCSSSSSBCSCBCTTSCBSSCCEEHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 33474138899999999999973134567299999999999999985726578980584015899967777455599999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 i~a~l~ly~~tgd~~yl~~a~~~~~~~~~~f~D~~~G~W~~~l~~~g~p~~~~~~g~~~~yH~~~a~~~~~~~~~~~~~~ 400 (411)
T d2afaa1 321 MGTAYALYTLTDDSQYEEWYQKWWDYCIKYLMDYENGSWWQELDADNKVTTKVWDGKQDIYHLLHCLVIPRLPLAPGLAP 400 (411)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTTTSSBCSEECTTSCBCC----CCCCCTTTHHHHTGGGSCSSSCHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHH
T ss_conf 99999999866989999999999999998687999983464589997998888999987206999998615889974218
Q ss_pred ----------C
Q ss_conf ----------5
Q 000920 1082 ----------K 1082 (1223)
Q Consensus 1082 ----------~ 1082 (1223)
-
T Consensus 401 ~~~~~~~~~~~ 411 (411)
T d2afaa1 401 AVAAGLLDINA 411 (411)
T ss_dssp HHHTTCTTTTC
T ss_pred HHHCCCCCCCC
T ss_conf 88701346689
|
| >d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Formin homology 2 domain (FH2 domain) superfamily: Formin homology 2 domain (FH2 domain) family: Formin homology 2 domain (FH2 domain) domain: Bni1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=31019.05 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~PkP~~klK~l~W~ki~~~~~tiW~~i~~~~~~~~~~~~~~~~~le~~F~~k~~~~~~~~~~~~~~~~~lLd~kr~qni 80 (411)
T d1ux5a_ 1 KYPRPHKKLKQLHWEKLDCTDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSLASKRKEDLQKITFLSRDISQQF 80 (411)
T ss_dssp CCCCCSSCBCCCCCCCCSSCCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHHHHHHHHTTTSBCCSCHHHHHHH
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 96989999989776159998988200204410036788663099999986447777776666666662001767899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~I~L~~~~~~s~~~i~~ai~~~d~~~l~~~~l~~ll~~~~~~~~~~~~l~~~lPt~eE~~~l~~~~~~~~~~~d~~~L~~ 160 (411)
T d1ux5a_ 81 GINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQR 160 (411)
T ss_dssp HHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSSCSTTBCH
T ss_pred HHHHHHCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHCCH
T ss_conf 89998706999999999998368542487899999830210134799999817993789999999851445478454387
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~Eqf~~~l~~~~i~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~A~GF 240 (411)
T d1ux5a_ 161 ADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTSKQAQGF 240 (411)
T ss_dssp HHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCGGGCCSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 99999999862334499999999999999999999999999999999999957679999999999860625899871235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 kL~sL~kL~d~Ks~d~~~tLL~yiv~~~~~~~p~l~~~~~el~~v~~a~~~~~~~l~~~~~~L~~~l~~i~~~~~~~~~~ 320 (411)
T d1ux5a_ 241 KLSTLQRLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLS 320 (411)
T ss_dssp CGGGGGGSSSCBCTTSCSBHHHHHHHHHHHHCGGGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred EHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 23898876521179998018999999999869075332877888998861899999999999999999999999862025
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~d~f~~~~~~fl~~~~~~~~~l~~~~~~~~~~~~~~~~yfGEd~~~~~~~~~fF~~~~~F~~~~~~a~~en~~ 400 (411)
T d1ux5a_ 321 DSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLA 400 (411)
T ss_dssp CTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 40002511169999999999999999999999999999999999983899888789999999999999999999999999
Q ss_pred ----------C
Q ss_conf ----------5
Q 000920 1082 ----------K 1082 (1223)
Q Consensus 1082 ----------~ 1082 (1223)
.
T Consensus 401 ~~e~e~~~~k~ 411 (411)
T d1ux5a_ 401 AEEEERLYIKH 411 (411)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
T ss_conf 99999987209
|
| >d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome p450 152a1 (Bs-beta) species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=31015.32 Aligned_cols=1 Identities=100% Similarity=0.537 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 p~~~~~~~~l~~~~~~~~f~~~~~~kyg~~if~~~~~g~~~vvv~~pe~i~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~ 80 (411)
T d1izoa_ 1 PHDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYDTDRFQRQNALPKRVQKSLFGVNAIQ 80 (411)
T ss_dssp CBCCCTTHHHHHHHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHTCTTTEECTTCSCHHHHTTTTCTTCGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHCCCCCEECCCCCHHHHHHHCCCCCCC
T ss_conf 98997014999997799999999999799769999889528999799999999769997113777287777644899645
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~dg~~h~~~R~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~l~~~v~~~~~g~~~~~~~~~~~~~~ 160 (411)
T d1izoa_ 81 GMDGSAHIHRKMLFLSLMTPPHQKRLAELMTEEWKAAVTRWEKADEVVLFEEAKEILCRVACYWAGVPLKETEVKERADD 160 (411)
T ss_dssp GCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHTTSSEEEHHHHHHHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 77808999999999873199999999999999999999985425751299999999998888874887647999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~k~~~a~~~~~~~~~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~ag~~ 240 (411)
T d1izoa_ 161 FIDMVDAFGAVGPRHWKGRRARPRAEEWIEVMIEDARAGLLKTTSGTALHEMAFHTQEDGSQLDSRMAAIELINVLRPIV 240 (411)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTSHHHHHHHCBCTTSCBCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99999876321310399999999999999999998621224586322899999986751775311013456665320332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 tts~~l~~~l~~L~~~P~vq~kl~~e~~~~l~a~i~E~lRl~p~~~~~~r~~~~d~~i~g~~ipkgt~V~~~~~~~~~dp 320 (411)
T d1izoa_ 241 AISYFLVFSALALHEHPKYKEWLRSGNSREREMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDP 320 (411)
T ss_dssp THHHHHHHHHHHHHHSTHHHHHHHTCCHHHHHHHHHHHHHHSCCCCEEEEEECSCEEETTEEECTTCEEEEEHHHHHTCT
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCC
T ss_conf 30288999999987310123221001330499999999986503322344333334431043464221101355530442
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~p~~F~PeR~~~~~~~~~~~~pFg~G~~~~~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~p~ 400 (411)
T d1izoa_ 321 RLWDHPDEFRPERFAEREENLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYDVPEQSLHYSLARMPSLPE 400 (411)
T ss_dssp TTSSSTTSCCGGGGTTCCCCSSSCCTTCSSCTTSSSCCTTHHHHHHHHHHHHHHHHHTEEEECCSCCCCCCSSSSSCCCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCC
T ss_conf 00899562186535899999776479899899988088439999999999999999826898179986887255377568
Q ss_pred ----------C
Q ss_conf ----------5
Q 000920 1082 ----------K 1082 (1223)
Q Consensus 1082 ----------~ 1082 (1223)
+
T Consensus 401 ~~~~~~~~~Rr 411 (411)
T d1izoa_ 401 SGFVMSGIRRK 411 (411)
T ss_dssp TCCEEEEEEEC
T ss_pred CCCEEEEEECC
T ss_conf 99079988693
|
| >d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Catalase-peroxidase KatG domain: Catalase-peroxidase KatG species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=30948.78 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~wwp~~~~~~~l~~~~~~~~p~~~~f~y~~~~~~ld~~a~~~d~~~l~~~s~~wwpaD~G~ygP~lVRl 80 (410)
T d2ccaa1 1 MKYPVEGGGNQDWWPNRLNLKVLHQNPAVADPMGAAFDYAAEVATIDVDALTRDIEEVMTTSQPWWPADYGHYGPLFIRM 80 (410)
T ss_dssp CCCGGGTCCGGGTSTTCCCGGGGSCSCGGGCTTCTTCCHHHHHTTCCHHHHHHHHHHHHTSCCTTSCCGGGCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 98987899766628644587555148877899999862899986269999999999998544335765456633001100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 AWHsAGTYR~~DgRGGanGg~iRfaPe~sWp~N~~LdkAr~LL~piK~ky~~~iS~ADLi~LAG~vAiE~mGg~~i~f~~ 160 (410)
T d2ccaa1 81 AWHAAGTYRIHDGRGGAGGGMQRFAPLNSWPDNASLDKARRLLWPVKKKYGKKLSWADLIVFAGNCALESMGFKTFGFGF 160 (410)
T ss_dssp HHHHHTTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHTTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCSCCCB
T ss_pred HHHHHCEEECCCCCCCCCCCEECCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEECCEECCCCCCCCC
T ss_conf 22331301212677899877466541115312231899999988888760546567660336350210141255112455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 GR~D~~~~~~~~~g~~~~~~~~~R~~~~~el~d~l~~~~m~li~~np~g~~g~pd~~~~a~~lRd~f~rMglnD~E~VAL 240 (410)
T d2ccaa1 161 GRVDQWEPDEVYWGKEATWLGDERYSGKRDLENPLAAVQMGLIYVNPEGPNGNPDPMAAAVDIRETFRRMAMNDVETAAL 240 (410)
T ss_dssp CCCCCSSCCCCCCCSCSSTTCCCCEETTTEECTTCCSSSTTCSSSCTTSGGGCCCHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 54435544200378866377899857632456754444458767787534689871017999999998706871766533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 iaGgHtlGk~Hg~~~~~~~g~~p~~a~~~~~G~g~~~~~~~~~~~~~~~sG~eg~WT~~P~~~dN~yF~~Ll~~~we~~k 320 (410)
T d2ccaa1 241 IVGGHTFGKTHGAGPADLVGPEPEAAPLEQMGLGWKSSYGTGTGKDAITSGIEVVWTNTPTKWDNSFLEILYGYEWELTK 320 (410)
T ss_dssp HHHHHTSCCCCBSSCGGGBCCCGGGSCGGGTTCCCCBCSTTSSGGGCBSSSCCCCCCSCTTSCSSHHHHHHHHSCEEEEE
T ss_pred HCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECC
T ss_conf 12421113346788734257784658702157755688787778555367865547668514535777541356515214
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 sp~g~~qw~~~d~~~~~~~pda~~~~~~~~~ml~tDlaL~~Dp~~r~iae~ya~d~d~F~~dFa~AW~KL~hrDmgp~~r 400 (410)
T d2ccaa1 321 SPAGAWQYTAKDGAGAGTIPDPFGGPGRSPTMLATDLSLRVDPIYERITRRWLEHPEELADEFAKAWYKLIHRDMGPVAR 400 (410)
T ss_dssp CTTSCEEEEEGGGTTTTCBCCTTSCCCBCCEECHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGG
T ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 45655310355777777777776776678764226677520987899999997099999999999999986125796342
Q ss_pred ---------C
Q ss_conf ---------5
Q 000920 1082 ---------K 1082 (1223)
Q Consensus 1082 ---------~ 1082 (1223)
.
T Consensus 401 ~~g~~~p~e~ 410 (410)
T d2ccaa1 401 YLGPLVPKQT 410 (410)
T ss_dssp CBSTTCCSCC
T ss_pred CCCCCCCCCC
T ss_conf 0689999889
|
| >d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Myo-inositol 1-phosphate synthase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=30946.44 Aligned_cols=1 Identities=0% Similarity=-2.188 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~v~s~~~~y~~~~i~~~y~y~~t~v~~~~~g~~~v~p~~~~~~f~t~~~~p~klGVmlVG~GGnngTT~~aGv~An 80 (410)
T d1p1ja1 1 ITSVKVVTDKCTYKDNELLTKYSYENAVVTKTASGRFDVTPTVQDYVFKLDLKKPEKLGIMLIGLGGNNGSTLVASVLAN 80 (410)
T ss_dssp CCEEEECCTTEEEETTEEEEEEEEEEEEEEECTTSEEEEEEEEEEEEEEEECCCCSSEEEEEETTTSHHHHHHHHHHHHH
T ss_pred CCCEEEECCCEEECCCEEEEEEEECCEEEEECCCCEEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 96569828980773411799988510389976897089987567789994256786478998417852899999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 k~gl~w~tk~G~~~pny~GSltq~stirlG~~~~g~~~~~p~kd~lPl~~p~DiVfGGWDI~~~nl~eAa~rA~VLd~~l 160 (410)
T d1p1ja1 81 KHNVEFQTKEGVKQPNYFGSMTQCSTLKLGIDAEGNDVYAPFNSLLPMVSPNDFVVSGWDINNADLYEAMQRSQVLEYDL 160 (410)
T ss_dssp HTTCCEEETTEEECCCCTTCHHHHCEEEEEECTTSCEEEEEGGGSSCCCCGGGEEEEEECSSCCCHHHHHHHHTCSCHHH
T ss_pred HCCCCCCCCCCCCCCCCCCCEEEECEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCHHH
T ss_conf 62786333556546763230210031431455788845663776188898412789245699988999998769999899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 l~ql~~~L~~i~P~psV~~~dfiaanq~~ra~nvi~~d~~~~~~~~sk~e~ve~Ir~DIr~Fk~~n~lDrVVVlWtASTE 240 (410)
T d1p1ja1 161 QQRLKAKMSLVKPLPSIYYPDFIAANQDERANNCINLDEKGNVTTRGKWTHLQRIRRDIQNFKEENALDKVIVLWTANTE 240 (410)
T ss_dssp HHHHHHHHTTCCCBCBCCCGGGSCGGGGGGCCCBSCBCTTSCBCSCCHHHHHHHHHHHHHHHHHHTTCSCEEEEECSCCC
T ss_pred HHHHHHHHHCCCCCCCEECCHHHHCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 99999998638634320060555212112102322456545546655899999999999999987389748999458887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 r~~~~~p~v~~t~e~l~~ai~~n~~eIsPS~lYA~AAI~eG~pyvNgsPq~t~vPal~eLA~~~gv~iaG~DfKdslLA~ 320 (410)
T d1p1ja1 241 RYVEVSPGVNDTMENLLQSIKNDHEEIAPSTIFAAASILEGVPYINGSPQNTFVPGLVQLAEHEGTFIAGDDLKDSLLAT 320 (410)
T ss_dssp CCCCCCTTTTSSHHHHHHHHHTTCTTCCHHHHHHHHHHHTTCCEEECSCSCCCCHHHHHHHHHHTCCEEESSBCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHH
T ss_conf 68888832124399999887559987787999999999739984468864456579999984279458715124322345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 pli~dL~vl~e~~trI~~~~dg~vl~d~~~f~~~~~Vls~Lsyl~KAPl~p~g~~vvnal~~Qr~~len~~ra~~Gl~p~ 400 (410)
T d1p1ja1 321 PLIIDLLVMTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLKAPLTRPGFHPVNGLNKQRTALENFLRLLIGLPSQ 400 (410)
T ss_dssp HHHHHHHHHHHHHHTEEEEECBTTBTTCSCCBCCCSBCGGGGGGBSSCCCCTTCCCCCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHEEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999887650368621765457622162153089898887538989999965016888999999999997289986
Q ss_pred ---------C
Q ss_conf ---------5
Q 000920 1082 ---------K 1082 (1223)
Q Consensus 1082 ---------~ 1082 (1223)
.
T Consensus 401 ~~m~le~~l~ 410 (410)
T d1p1ja1 401 NELRFEERLL 410 (410)
T ss_dssp CCCCHHHHCC
T ss_pred CCCEEEEECC
T ss_conf 6651146329
|
| >d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30944.07 Aligned_cols=1 Identities=0% Similarity=-0.261 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~g~~~~~~~iE~~~~~~la~Me~~Gi~vD~e~l~~~~~~~~~~~~~l~~~~~~~~g~~fn~~S~~ql~~~Lf~~lgl~~ 80 (410)
T d1kfsa2 1 HKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKP 80 (410)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHHHHCBCBCHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCSCTTTTSHHHHTTTSSCSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 99689999999988999999999739898899999999999999999999999995990899999999999997429998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~t~~g~~~t~~~~L~~~~~~~~~~~~l~~~r~~~k~~~~~~~~~~~~~~~~~gri~~~~~~~gt~TGR~s~s~pnlQn 160 (410)
T d1kfsa2 81 LKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQN 160 (410)
T ss_dssp CCCCC----TTTCCHHHHHTTTCHHHHHHHHHHHHHHHHHHTTTTGGGGBCTTTSSBCCEEESSCCSSSCCEEESSCGGG
T ss_pred CCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEECCCCCCCCCCCC
T ss_conf 76478898554055410112223899999999999999887652433125778995412575124200232136863035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~P~~~~~~~~iR~~fia~~G~~lv~~D~sqiE~Rv~A~ls~D~~l~~~~~~g~D~h~~~A~~~~~~~~~~~~~~~R~~aK 240 (410)
T d1kfsa2 161 IPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAK 240 (410)
T ss_dssp SCSSSHHHHHHHTTBBCCTTEEEEEEEETTHHHHHHHHHTTCHHHHHHHHTTCCHHHHHHHHHTTCCTTTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHEEECCCCCEEEEECHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHHHHHHCCCCCHHCCCCHHHHHH
T ss_conf 78887423255632736999779985545384443444676224788885265067641999819973210220043320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~g~~YG~G~~~la~~l~~s~~eA~~~~~~~~~~~p~i~~~~~~~~~~a~~~g~v~t~~Grr~~~~~~~~~~~~~r~~ 320 (410)
T d1kfsa2 241 AINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAA 320 (410)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCTTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSEEECTTCCEEECTTTTCSSHHHHHH
T ss_pred HEEEEHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHHHHH
T ss_conf 31230141356778998809899999999999988787846899999999997595530368503699754405878888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~r~a~N~~iQg~aadi~k~a~~~i~~~l~~~~~~~~~v~~VHDEiv~ev~~~~~~~~~~~i~~~M~~~~~~~vPl~~e~ 400 (410)
T d1kfsa2 321 AERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPLLVEV 400 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEEETTEEEEEEETTTHHHHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 88888652013389999999999999999852899889998453258998389999999999999846456898468320
Q ss_pred ---------C
Q ss_conf ---------5
Q 000920 1082 ---------K 1082 (1223)
Q Consensus 1082 ---------~ 1082 (1223)
.
T Consensus 401 ~~g~~w~e~h 410 (410)
T d1kfsa2 401 GSGENWDQAH 410 (410)
T ss_dssp EEESBHHHHC
T ss_pred CCCCCHHHHC
T ss_conf 5628868829
|
| >d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exomannosidase species: Cellvibrio mixtus [TaxId: 39650]
Probab=100.00 E-value=0 Score=30942.90 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~v~~~g~~f~~nG~~~~~~G~N~~~~~~~~~~~~~~~~~~~~~~l~~~k~~G~N~iR~~~~~~~~~~~~~~~~~~~~~ 80 (410)
T d1uuqa_ 1 EHFVRVNGGHFELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKAIGVNNLRVLAVSEKSEINSAVKPAVTNG 80 (410)
T ss_dssp CCCCEEETTEEEETTEEECEEEEECTTHHHHTCSSTTCCHHHHHHHHHHHHHTTCCEEEEECCCBCCCSTTSCSSCSBSS
T ss_pred CCCEEEECCEEEECCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 99879989999999989999999317765566567879999999999999977995999687366545555568776554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~g~~de~gl~~~d~~l~~a~~~Gi~vi~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (410)
T d1uuqa_ 81 FGNYDETLLQGLDYLLVELAKRDMTVVLYFNNFWQWSGGMTQYMAWIEGEPVQDPNVTNEWEAFMAKSASFYRSEKAQQE 160 (410)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHTTCEEEEECCBSSSTTCHHHHHHHHHHTCCCCCHHHHCCHHHHHHHHHGGGGCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 33245889999999999999739856874034556657754465312477767655555553335665300368999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~l~NE~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~dp~~~v~~~~~~~~~~ 240 (410)
T d1uuqa_ 161 YRKTLEKIITRVNSINGKAYVDDATIMSWQLANEPRPGNSQTTAEEKQIYIDWVHAAAAYIKTLDAHHLVSSGSEGEMGS 240 (410)
T ss_dssp HHHHHHHHHTCBCTTTCCBGGGCTTEEEEESCBSCCSCSTTCCHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCCSGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf 99999999986546666765577067666533665776676543320346677777775455408995576424566666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~D~~s~h~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPv~i~E~G~~~~~~~~~ 320 (410)
T d1uuqa_ 241 VNDMQVFIDAHATPDIDYLTYHMWIRNWSWFDKTKPAETWPSAWEKAQNYMRAHIDVAKQLNKPLVLEEFGLDRDMGSYA 320 (410)
T ss_dssp TTCHHHHHHHHCSTTCCSEEEEECTTTTTSSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCGGGCCC
T ss_pred CCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 44321013440477655688612754446555433322222015666778888888876249976650255656788888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~d~~~~~~ 400 (410)
T d1uuqa_ 321 MDSTTEYRDNYFRGVFELMLASLEQGEPSAGYNIWAWNGYGRTTRANYWWQEGDDFMGDPPQEEQGMYGVFDTDTSTIAI 400 (410)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHTTCSEEEEEESCEEETCCCCCTTCCCCTTSCCCSSCTTSCTTSSCEETTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH
T ss_conf 76468999999999999999999828998999995416878888887778779987798985347348998899748899
Q ss_pred ---------C
Q ss_conf ---------5
Q 000920 1082 ---------K 1082 (1223)
Q Consensus 1082 ---------~ 1082 (1223)
+
T Consensus 401 ~~~~~~~~~~ 410 (410)
T d1uuqa_ 401 MKEFNARFQP 410 (410)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHCCC
T ss_conf 9999974197
|
| >d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=30940.61 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~ll~~~Y~~~~~~~vi~~~g~~~~~~~v~~~~~gf~PYFyv~~~~~~~~~~~~~~~~~~~~~~e~v~k 80 (410)
T d1s5ja1 1 EWLEEAQENKIYFLLQVDYDGKKGKAVCKLFDKETQKIYALYDNTGHKPYFLVDLEPDKVGKIPKIVRDPSFDHIETVSK 80 (410)
T ss_dssp CCSCBCCTTCEEEEEEEEEETTTTEEEEEEEETTTTEEEEEECCSCCCCEEEESSCHHHHTTCHHHHTCTTEEEEEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 97655456875899986886329989999974269938999968896530899888216899998764236561799997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~ki~~~~p~~v~~~r~~~~~~~EadI~~~~RfliD~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (410)
T d1s5ja1 81 IDPYTWNKFKLTKIVVRDPLAVRRLRNDVPKAYEAHIKYFNNYMYDIGLIPGMPYVVKNGKLESVYLSLDEKDVEEIKKA 160 (410)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHTTSSSCEESCSSCHHHHHHHHHTCCTTSEEEEETTEEEECCCCCCHHHHHHHHHH
T ss_pred EECCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHCEEEECCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 71237853069999982899999999874654013668421179994886635899558743334555672011010133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~lsfDIE~~~~~~~~fP~p~~~~~~ii~I~~~~~~~~~~v~~~~~~~~~~~~~ 240 (410)
T d1s5ja1 161 FADSDEMTRQMAVDWLPIFETEIPKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKVLVLNRNDVNEGSV 240 (410)
T ss_dssp TTTSCHHHHHHHHHHTHHHHSCCCCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEEEEECSSCCCCCCE
T ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCC
T ss_conf 34443000000011354333689984199999997878889897953367549999998165878999981677766544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~v~~~~sE~eLL~~F~~~i~dpDii~GyN~~~FD~pyL~~Ra~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 320 (410)
T d1s5ja1 241 KLDGISVERFNTEYELLGRFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKF 320 (410)
T ss_dssp EETTEEEEEESSHHHHHHHHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEECCE
T ss_conf 67980999978999999998754316666898435688689999999995996321531104741016855458976062
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~d~~~~~~~~~~l~sy~Ld~Va~~~Lg~~K~d~~~~~~~~~~~~l~~Y~~~D~~L~~~L~~~~~~~~l~~~~~~s~i~ 400 (410)
T d1s5ja1 321 FFNKAVRNYAFEGKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLTTFNNDLTMKLIVLFSRIS 400 (410)
T ss_dssp HTSHHHHHHTSTTCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred EEEHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 62148998752358788987999999869695567776565897999886099999999998652588899999999985
Q ss_pred ---------C
Q ss_conf ---------5
Q 000920 1082 ---------K 1082 (1223)
Q Consensus 1082 ---------~ 1082 (1223)
.
T Consensus 401 ~~plddv~r~ 410 (410)
T d1s5ja1 401 RLGIEELTRT 410 (410)
T ss_dssp CCCHHHHTTS
T ss_pred CCCHHHCCCC
T ss_conf 9798980479
|
| >d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular stomatitis indiana virus [TaxId: 11277]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Viral glycoprotein ectodomain-like superfamily: Viral glycoprotein ectodomain-like family: Spike glycoprotein-like domain: Spike glycoprotein species: Vesicular stomatitis indiana virus [TaxId: 11277]
Probab=100.00 E-value=0 Score=30871.95 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~iv~p~~~~~~W~~v~~~~l~CP~~~~~~~~~~~~~~~~~~~~p~~~t~~kv~G~~Chk~~w~ttC~~~wyg~~~it~ 80 (409)
T d2cmza1 1 KFTIVFPHNQKGNWKNVPSNYHYCPSSSDLNWHNDLIGTAIQVKMPKSHKAIQADGWMCHASKWVTTCDFRWYGPKYITQ 80 (409)
T ss_dssp CEEEEEECSCCCCCEECCTTCCCCGGGGCTTTCCSCEEEEEEEEEECCCSCCEECEEEEEEEEEEEEEEECTTSCEEEEE
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECCEEEEEEEEEEEEEEEEECCEEEEE
T ss_conf 97689168888888237711244999745467786245558998103566336552798655899998746307558999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~i~~~~pt~~~C~~ai~~~~~G~~~~p~fPp~~C~w~tv~t~e~~~i~i~ph~V~lDpY~~~~~D~~F~gGkCs~~~C~T 160 (409)
T d2cmza1 81 SIRSFTPSVEQCKESIEQTKQGTWLNPGFPPQSCGYATVTDAEAVIVQVTPHHVLVDEYTGEWVDSQFINGKCSNYICPT 160 (409)
T ss_dssp EEEEECCCHHHHHHHHHHHHTTCCCCCCSCCCCCCTTSEEEEEEEEEEEEECCEEEETTTTEEECTTBGGGEECSSEEEB
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEECCCCEEECCCCCCCCCCCCCCCC
T ss_conf 99974499899999998876587258989985515631211037999996455325377882746757999668970677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~h~~tiWi~d~~~~~~C~~~~~~~~i~~~~~~gk~~s~g~~~~g~~~~~~~~~~~~gACkl~fCG~~GIRl~~GeWv~i~ 240 (409)
T d2cmza1 161 VHNSTTWHSDYKVKGLCDSNLISMDITFFSEDGELSSLGKEGTGFRSNYFAYETGGKACKMQYCKHWGVRLPSGVWFEMA 240 (409)
T ss_dssp SSSSCEEEESSCHHHHHGGGEEEEEEEEEESSCCGGGTTCSSCEEEETTEEEEECTTCEEEEETTEEEEECTTSBEEEES
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCHHCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCEECCCCCEEEEE
T ss_conf 67861661577666501355301211684255600014653038983785545778831254348754687798589986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~p~C~~~~~v~~~~~~~~~~~~~~~~e~~~~~~~Cl~tl~ki~~~~~iS~~dLSyL~p~~PG~G~AY~i~n 320 (409)
T d2cmza1 241 DKDLFAAARFPECPEGSSISAPSQTSVDVSLIQDVERILDYSLCQETWSKIRAGLPISPVDLSYLAPKNPGTGPAFTIIN 320 (409)
T ss_dssp CHHHHHHTTCCBCCTTCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHTTSCCSSEEEEEEEEET
T ss_pred CCCCCEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 66641002577799998655036775166778999877879998999999974798775555420567999864379989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 gtL~~~~~~Y~~v~~~~~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~G~NG~~~~~~~~~~p~~~~~~~~~d~~l~~~~ 400 (409)
T d2cmza1 321 GTLKYFETRYIRVDIAAPILSRMVGMISGTTTERELWDDWAPYEDVEIGPNGVLRTSSGYKFPLYMIGHGMLDSDLHLSS 400 (409)
T ss_dssp TEEEEEEEEEEEEEESSSEESSSEEEETTSCCEEECCCCCEEETTEEECGGGCEEETTEEECCHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEECCCEEEEECCEEEECHHHHCCCCHHHHHHHHH
T ss_conf 94897668999998226653332564477774542244646868844466526985994895656711520034444440
Q ss_pred --------C
Q ss_conf --------5
Q 000920 1082 --------K 1082 (1223)
Q Consensus 1082 --------~ 1082 (1223)
.
T Consensus 401 ~~~~~~HPh 409 (409)
T d2cmza1 401 KAQVFEHPH 409 (409)
T ss_dssp CCEECCCCC
T ss_pred CCCCCCCCC
T ss_conf 267678999
|
| >d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Thermus aquaticus [TaxId: 271]
Probab=100.00 E-value=0 Score=30870.10 Aligned_cols=1 Identities=100% Similarity=0.803 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~l~~~y~~lE~~l~~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~g~~fN~~S~~ql~~~L~~~l~l~~ 80 (409)
T d1qtma2 1 EERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPA 80 (409)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 90789999999968999999999729284899999999999999999999999995991899999999999999739997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~g~~~~~~~~l~~l~~~~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~grih~~~~~~gt~TGR~ss~~pnlq 160 (409)
T d1qtma2 81 IGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQ 160 (409)
T ss_dssp CCBCTTTCCBCCCHHHHHHTTTTCTHHHHHHHHHHHHHHHHHTTTTGGGGBCTTTSEECCEEESSCCSSSCCEEESSCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHH
T ss_conf 66656678755323368887421168999999889988888878778775038899163144556666665466650120
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~p~~~~~~~~~R~~f~a~~G~~lv~aD~sqiElRvlA~ls~D~~l~~~~~~g~D~~~~~a~~~~~~~~~~v~~~~R~~a 240 (409)
T d1qtma2 161 NIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAA 240 (409)
T ss_dssp SCCCSSHHHHHHHTTEECCTTEEEEEEEETTHHHHHHHHHHCCHHHHHHHHTTCCHHHHHHHHHHTCCGGGCCHHHHHHH
T ss_pred CCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCEECCCCCCHHHHHHHHCCCCCEEECHHHHHHH
T ss_conf 25410014454100555789968998530236324688860674411110157620101012212764223140676667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 K~~~fg~~YG~g~~~l~~~~~~~~~ea~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~v~t~~Gr~~~~~~~~~~~~~~~~ 320 (409)
T d1qtma2 241 KTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVRE 320 (409)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHSEEECTTCCEEECGGGGCSCHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 76410123576334566665442778999999998864235677788999887627233235653332100001254432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~N~~iQg~aAdi~k~a~~~~~~~l~~~~~~iv~~VHDEiv~ev~~~~a~~~~~~i~~~M~~~~~l~vPl~~e~~ 400 (409)
T d1qtma2 321 AAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVG 400 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSEEEEEEETTTHHHHHHHHHHHHHTSSCCSSCCCEEEE
T ss_pred HHHHHCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 20200121320399999999999999999886699899974413499987789999999999998603268997786621
Q ss_pred --------C
Q ss_conf --------5
Q 000920 1082 --------K 1082 (1223)
Q Consensus 1082 --------~ 1082 (1223)
|
T Consensus 401 ig~~W~e~k 409 (409)
T d1qtma2 401 IGEDWLSAK 409 (409)
T ss_dssp EESBHHHHC
T ss_pred ECCCHHHCC
T ss_conf 558967749
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=100.00 E-value=0 Score=30869.77 Aligned_cols=1 Identities=0% Similarity=-1.524 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~~~~~~y~~~~~~~l~~l~pe~ah~~~~~~l~~~~~~~~~~~~~~~L~~~v~Gl~f~NPiglAAG~dk~~~~i~~~ 80 (409)
T d1tv5a1 1 FESYNPEFFLYDIFLKFCLKYIDGEICHDLFLLLGKYNILPYDTSNDSIYACTNIKHLDFINPFGVAAGFDKNGVCIDSI 80 (409)
T ss_dssp CCTTSTTCHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTCSCCCCSCCCGGGCEEETTEEESSSEEECTTTTTTCSSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEECCCCCEECCCCCCCHHHHHHH
T ss_conf 98778326789999999852599899999999999735777534677744466788764489687560668788999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~lGfG~ve~gTvT~~p~~GNp~PR~~r~~~~~~liN~~Gl~n~G~~~~~~~l~~~~~~~~~~~~~~~~i~gi~~~~~~~ 160 (409)
T d1tv5a1 81 LKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILFRKRQEEDKLLSKHIVGVSIGKNKD 160 (409)
T ss_dssp HTTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCSCBSCHHHHHHHHHHHHHHHHHCSTTTTCEEEEEECCCTT
T ss_pred HHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 86688769951023035647897322345433321024677763589999987777654430566654300231454420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~aD~~elNiScPNt~glr~~~~~~~L~~ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (409)
T d1tv5a1 161 TVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDESTYNEDNKIVEKKN 240 (409)
T ss_dssp CSCHHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 15788877999998850143100010265433442456889999999999999875301222221111111001111000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlS 320 (409)
T d1tv5a1 241 NFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVS 320 (409)
T ss_dssp ----------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEE
T ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11222222110000000110123567865998589987024688999988606541011322225555334234677643
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 G~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~AGAs~VQv~T~li~~Gp~~v~~I~~~L~~~l~~~g~~~ 400 (409)
T d1tv5a1 321 GAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYN 400 (409)
T ss_dssp EHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 10178899999999999708996099989979999999999849978763067871192899999999999999829998
Q ss_pred --------C
Q ss_conf --------5
Q 000920 1082 --------K 1082 (1223)
Q Consensus 1082 --------~ 1082 (1223)
.
T Consensus 401 i~e~iG~~h 409 (409)
T d1tv5a1 401 LKEAIGRKH 409 (409)
T ss_dssp SGGGTTTTC
T ss_pred HHHHCCCCC
T ss_conf 999539889
|
| >d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: LanC-like family: LanC-like domain: Nisin biosynthesis protein NisC species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=30866.04 Aligned_cols=1 Identities=0% Similarity=-0.725 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sLy~G~~GiaL~l~~l~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~g 80 (409)
T d2g0da1 1 KKNIKRNVEKIIAQWDERTRKNKENFDFGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYGLLTGS 80 (409)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC-----CGGGGSTTTSHHHHHHHHHTTTTSTTHHHHHHHHHHHHHHHHHHHHHHCCSCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 95188999999985566530365569989983238779999999999886498789999999999999998607998863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 lf~G~~Gi~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~D~l~G~aG~~~~LL~~~~~~~~~~~~ 160 (409)
T d2g0da1 81 LYSGAAGIALSILHLREDDEKYKNLLDSLNRYIEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLLLINDEQYDDLKI 160 (409)
T ss_dssp TTTSHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCHHHHSSSSSHHHHHHHHTTCCCGGGHHHHH
T ss_pred EECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCCHHHH
T ss_conf 00787999999999986050356899999999999999999874402367766212226188999999833222407899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~~L~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (409)
T d2g0da1 161 LIINFLSNLTKENNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYE 240 (409)
T ss_dssp HHHHHHHHTTSCCSSSCTTCBCGGGSSSHHHHHHCTTCBEECCTTTSHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999997413554333454445552200036778776426550799999999998843788218999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~la~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 320 (409)
T d2g0da1 241 KFELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQRKLGIDS 320 (409)
T ss_dssp HHCCCGGGTTCCCSEECHHHHHHTSCCSCCSCCCCCSSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCTTCCS
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98642335688987676531123334456766655437884679999999998719889999999999999983548998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~LCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGi~~~Ll~~~~~~~~~~W~~~~L 400 (409)
T d2g0da1 321 YMICHGYSGLIEICSLFKRLLNTKKFDSYMEEFNVNSEQILEEYGDESGTGFLEGISGCILVLSKFEYSINFTYWRQALL 400 (409)
T ss_dssp CCTTTSHHHHHHHHHHHHHHHCCCTTHHHHHHHHHTHHHHHHSCCSTTCSSTTTSHHHHHHHHHHHHSCCCSSCGGGGGT
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCHHHC
T ss_conf 93568689999999999988488799999999999888743467899997244169999999998268999987112110
Q ss_pred --------C
Q ss_conf --------5
Q 000920 1082 --------K 1082 (1223)
Q Consensus 1082 --------~ 1082 (1223)
-
T Consensus 401 ~~~~~~~~~ 409 (409)
T d2g0da1 401 LFDDFLKGG 409 (409)
T ss_dssp CCTTTTTCC
T ss_pred CCCCCCCCC
T ss_conf 456234488
|
| >d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini [TaxId: 2094]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Arginine deiminase domain: Arginine deiminase species: Mycoplasma arginini [TaxId: 2094]
Probab=100.00 E-value=0 Score=30865.32 Aligned_cols=1 Identities=0% Similarity=-1.022 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~v~SE~g~Lk~V~vhrPg~e~~~l~P~~~~~~lfd~~~~~~~a~~Ehd~f~~~L~~~Gv~V~~l~~ll~e 80 (409)
T d1s9ra_ 1 SVFDSKFKGIHVYSEIGELESVLVHEPGREIDYITPARLDELLFSAILESHDARKEHKQFVAELKANDINVVELIDLVAE 80 (409)
T ss_dssp CCSCTTCCSCBBCCSSSCEEEEEECCCCGGGGGCCGGGHHHHTCSSCCCHHHHHHHHHHHHHHHHTTTCEEEEHHHHHHH
T ss_pred CCCCCCCCCCEEECCCCCCCEEEECCCCHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHH
T ss_conf 93113778641577700131799769848987269311577514777799999999999999999789889983786876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~g~~~~e~~~~~~~~~~~~plpn~~F~RD 160 (409)
T d1s9ra_ 81 TYDLASQEAKDKLIEEFLEDSEPVLSEEHKVVVRNFLKAKKTSRELVEIMMAGITKYDLGIEADHELIVDPMPNLYFTRD 160 (409)
T ss_dssp HHHHSCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHTCSSHHHHHHHHHHCEEHHHHTCCCSSSEEECCCGGGGCTTS
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHCCC
T ss_conf 55407999999999863101134454768888999986048889999988524515442555676334678755200057
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~gvil~~m~~~~R~~E~~~~~~i~~~~~~~~~~~~~~~~~~~~~~EGGD~l~~g~~~~~iG~s~RTn~~gie~L 240 (409)
T d1s9ra_ 161 PFASVGNGVTIHYMRYKVRQRETLFSRFVFSNHPKLINTPWYYDPSLKLSIEGGDVFIYNNDTLVVGVSERTDLQTVTLL 240 (409)
T ss_dssp SEEEEBTEEEECCCSSHHHHTTHHHHHHHHHHCTTTTTCCEEECGGGCSCCCGGGEEECSSSEEEEEESSSCCHHHHHHH
T ss_pred CEEEECCCEEECCCCCHHHCCCHHHHHHHHHHCHHHCCCCEEEECCCCCCCCCCCEEEECCCEEEEEECCCCCHHHHHHH
T ss_conf 43687486897899984665477999999984844349855972687664556747998996799997876798999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~L~~~~~~~~~~v~~~~~p~~~~~mHLDt~f~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (409)
T d1s9ra_ 241 AKNIVANKECEFKRIVAINVPKWTNLMHLDTWLTMLDKDKFLYSPIANDVFKFWDYDLVNGGAEPQPVENGLPLEGLLQS 320 (409)
T ss_dssp HHHHHHCTTCCCCEEEEEECCCBTTBCSGGGTEEECSSSEEEECGGGTTTCEEEEEETTTSCSSCCCEEECCCHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEEECCCCCCCCEEECCCEEECCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99863447712689875047886552233560243279849982543564220012203676654101210338999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~i~~~~~~~~~~~~~~E~~~~~~N~L~l~p~~Vi~~~~~~~~~~~L~~~Gievi~i~~~el~~~gGg~hCmT~ 400 (409)
T d1s9ra_ 321 IINKKPVLIPIAGEGASQMEIERETHFDGTNYLAIRPGVVIGYSRNEKTNAALEAAGIKVLPFHGNQLSLGMGNARCMSM 400 (409)
T ss_dssp HHSSCCEEEETTCTTCCHHHHHHHHHTTTTCCEEEETTEEEEETTCHHHHHHHHHTTCEEEEECCHHHHTTSCCTTTTCE
T ss_pred HHCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCEEEEECCCHHHHHHHHHCCCEEEEECHHHHHCCCCCCEECCC
T ss_conf 74799808984688764566655540574049997799899858869999999978899999673785327998777870
Q ss_pred --------C
Q ss_conf --------5
Q 000920 1082 --------K 1082 (1223)
Q Consensus 1082 --------~ 1082 (1223)
.
T Consensus 401 pl~Re~v~~ 409 (409)
T d1s9ra_ 401 PLSRKDVKW 409 (409)
T ss_dssp EEEECCCCC
T ss_pred CCEECCCCC
T ss_conf 345279899
|
| >d1b25a1 a.110.1.1 (A:211-619) Formaldehyde ferredoxin oxidoreductase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Aldehyde ferredoxin oxidoreductase, C-terminal domains superfamily: Aldehyde ferredoxin oxidoreductase, C-terminal domains family: Aldehyde ferredoxin oxidoreductase, C-terminal domains domain: Formaldehyde ferredoxin oxidoreductase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=30864.93 Aligned_cols=1 Identities=0% Similarity=0.438 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 D~e~~~~~~~~~~~~i~~~~~~~~~~~~GT~~~~~~~~~~g~lP~rNf~~g~~~~a~~isge~~~~~~~~~~~C~~Cpi~ 80 (409)
T d1b25a1 1 DKEELKKLSQEAYNEILNSPGYPFWKRQGTMAAVEWCNTNYALPTRNFSDGYFEFARSIDGYTMEGMKVQQRGCPYCNMP 80 (409)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTHHHHHHHGGGGHHHHHHHTTCSCBTTTTBSCCTTGGGGSHHHHHHHEEEEECCTTCSSC
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 98999999999999987194176788368599999998759968177878878873445899998775127888999678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 C~~~~~~~~g~~~gpEYEt~~~~Gs~~gi~D~~~v~~~n~lcd~~GlDtIs~G~~ia~amE~~e~Gll~~~~~~Gd~e~~ 160 (409)
T d1b25a1 81 CGNVVLDAEGQESELDYENVALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTFGDFKGA 160 (409)
T ss_dssp CEEEEECTTSCEEEECHHHHHHHTGGGTCCCHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHTTSSSSSCCTTCHHHH
T ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 88358728987078536479887660289999999999999998687456450599999999977999866667886999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~ll~~Ia~r~GeiG~~La~G~~~aae~~G~~~~a~~vKG~e~p~~dpR~~~g~~l~yats~rGa~H~~~~~~~~~~~~~ 240 (409)
T d1b25a1 161 KQLALDIAYRKGELGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVIAWEIGTA 240 (409)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCHHHHHHHHTCGGGCCEETTEECCSCCCTTCHHHHHHHHHCTTSSCSTTCCCHHHHHTCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHCCC
T ss_conf 99999998667857899973399999994982321020777666527763024666551246787045533220331357
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dslg~C~F~~~~~~~~~e~~~~~l~avTG~~~t~eel~~~GeRi~ 320 (409)
T d1b25a1 241 PIEGEKAEKVEYKISYDPIKAQKVVELQRLRGGLFEMLTACRLPWVEVGLSLDYYPKLLKAITGVTYTWDDLYKAADRVY 320 (409)
T ss_dssp TTC--------CCCCCCTHHHHHHHHHHHHHTTHHHHHTCCSHHHHHHCCCTTHHHHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 41110123312345678078999999999999999860404552214577899999999984388999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~L~R~fN~r~G~~~~~~~dD~lP~r~~~ep~~~Gp~~G~~~d~~~~e~~l~~YY~~rGWde~G~Pt~e~L~~LgL~~v~~ 400 (409)
T d1b25a1 321 SLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRGWDERGIPKKETLKELDLDFVIP 400 (409)
T ss_dssp HHHHHHHHHHTTTCCCGGGGCCCTHHHHCCCSSSTTTTCCCCHHHHHHHHHHHHHHHTBCTTSCBCHHHHHHTTCTTHHH
T ss_pred HHHHHHHHHCCCCCCCHHHCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHH
T ss_conf 99999998606679983427797154118887787578868999999999999997399988846999999879966899
Q ss_pred --------C
Q ss_conf --------5
Q 000920 1082 --------K 1082 (1223)
Q Consensus 1082 --------~ 1082 (1223)
-
T Consensus 401 ~l~~~~~~~ 409 (409)
T d1b25a1 401 ELEKVTNLE 409 (409)
T ss_dssp HHHTTSCCC
T ss_pred HHHHHHCCC
T ss_conf 999986169
|
| >d1dkla_ c.60.1.2 (A:) Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate mutase-like superfamily: Phosphoglycerate mutase-like family: Histidine acid phosphatase domain: Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30862.64 Aligned_cols=1 Identities=0% Similarity=-0.559 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~p~~~L~~V~il~RHG~R~P~~~~~~~~~~~~~~~~~~~~~~G~LT~~G~~q~~~lG~~lr~~Y~~~~~~~~~~~~~~~ 80 (409)
T d1dkla_ 1 SEPELKLESVVIVSRHGVRAPTKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQSG 80 (409)
T ss_dssp CCSCEEEEEEEEEEECCCBCCCCCCHHHHHTCSSCCCCCSSCTTSBCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCCTT
T ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99888898999997188899999866557688433557999930526999999999999999998774367887778712
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~i~vrSt~~~Rt~~SA~afl~Gl~p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (409)
T d1dkla_ 81 QVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQT 160 (409)
T ss_dssp TEEEEECSSHHHHHHHHHHHHHHSTTCCCCEECCSCTTSCCGGGCTTTTTSSCCCHHHHHHHHHHHTTSSHHHHHHTTHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 06987279729999999999852788676655445556667566777577667536777789987745647778899889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~ 240 (409)
T d1dkla_ 161 AFRELERVLNFPQSNLCLKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSH 240 (409)
T ss_dssp HHHHHHHHHTGGGSHHHHTC-----CCCHHHHSCCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHTCSSGGGGTCCSHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHH
T ss_conf 99999999721121037877510037889999899988640477767726667659999999998599972110357799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~k~~l~s~HD~ti~~ll~aLgl~~~~~ 320 (409)
T d1dkla_ 241 QWNTLLSLHNAQFYLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGGALELNWTLP 320 (409)
T ss_dssp HHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHSCCCCEECGGGCEESCSEEEEEECHHHHHHHHHHHTCCCCBT
T ss_pred HHHHHHHHHHHHHEECCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCC
T ss_conf 99999999998650005887899873668999999999876404555678888638999568414999999819853456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~p~as~~~~El~~~~~~~~~~vrv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gC~~~~~~~~C~l~~F~~~~~ 400 (409)
T d1dkla_ 321 GQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVN 400 (409)
T ss_dssp TBSCSSCTTCEEEEEEEEETTTTEEEEEEEEEECCHHHHHTTCCCCSSSCCEEEECCCTTCCCBCTTSCEEHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 66899997663899999846999725999995376201245665201025775046479998889999368999999999
Q ss_pred --------C
Q ss_conf --------5
Q 000920 1082 --------K 1082 (1223)
Q Consensus 1082 --------~ 1082 (1223)
.
T Consensus 401 ~~~~p~c~~ 409 (409)
T d1dkla_ 401 EARIPACSL 409 (409)
T ss_dssp HHSCGGGCC
T ss_pred HHHHHHCCC
T ss_conf 775021279
|
| >d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix orenii [TaxId: 31909]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Halothermothrix orenii [TaxId: 31909]
Probab=100.00 E-value=0 Score=30861.63 Aligned_cols=1 Identities=0% Similarity=-1.690 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~k~~v~Y~~~~~~f~d~~~~~~Gd~~g~~~kLdyl~~~~~~~i~~LGv~~i~l~Pi~~~~~~~GY~~~d~~~vd~~~G~ 80 (409)
T d1wzaa2 1 FEKHGTYYEIFVRSFYDSDGDGIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPSYHGYDVTDYYKINPDYGT 80 (409)
T ss_dssp CCCCCCEEEECGGGSCCSSSSSCCCHHHHHHTHHHHCCSCTTCCSSCCCSEEEECCCEECSSSSCCSCSEEEEECGGGCC
T ss_pred CCCCCEEEEEECCHHCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98761799996412137999987489999975533210022277616866799798887989888684567875834599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~dlk~lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (409)
T d1wzaa2 81 LEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGY 160 (409)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCSBCCTTSHHHHHHHTCTTCTTGGGBCBCCSCCCCCBCSSSCBCSEEEETTEEEECS
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999866988998213344445673123331146553345322356444567654579853322346664466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~dln~~n~~vr~~~~~~~~~wi~~gVDGfR~D~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~ 240 (409)
T d1wzaa2 161 FWSGMPDLNYNNPEVQEKVIGIAKYWLKQGVDGFRLDGAMHIFPPAQYDKNFTWWEKFRQEIEEVKPVYLVGEVWDISET 240 (409)
T ss_dssp SCTTSCBBCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCCTTSCGGGTTHHHHHHHHHHHHHTTTSCCEEEEECCSCHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCHHHCCCCHHCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf 77887620325689999999999999982987212253532166032020068999999740037880799986037521
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nhD~~r~~~~~~~~~~~~~~ 320 (409)
T d1wzaa2 241 VAPYFKYGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYIDAPFLTNHDQNRILDQLGQDRNKARV 320 (409)
T ss_dssp HGGGGTTTCSEEBCHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHTCTTSCCCBCBSCCTTSCCHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 13444202232012468999988774167521678877777766543002456556312455567310002786678999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~lt~pG~P~iy~G~E~G~~~~~~~~~~R~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~Li~l 400 (409)
T d1wzaa2 321 AASIYLTLPGNPFIYYGEEIGMRGQGPHEVIREPFQWYNGSGEGETYWEPAMYNDGFTSVEQEEKNLDSLLNHYRRLIHF 400 (409)
T ss_dssp HHHHHTTSSSCCEEETTGGGTCCCCSSHHHHTCCCCCSSSCCTTCCCSSCCTTTTTTCCHHHHTTCTTSHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999838998799558653766899986546788777788888776775555655468998863748999999999999
Q ss_pred --------C
Q ss_conf --------5
Q 000920 1082 --------K 1082 (1223)
Q Consensus 1082 --------~ 1082 (1223)
.
T Consensus 401 Rk~~pal~s 409 (409)
T d1wzaa2 401 RNENPVFYT 409 (409)
T ss_dssp HHHCTHHHH
T ss_pred HHHCCHHCC
T ss_conf 960813039
|
| >d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Adenylosuccinate lyase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=30793.69 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 em~~ifs~~~~~~~~l~ve~A~a~a~~e~G~ip~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~a~~~~L~e~~g~~~~~v 80 (408)
T d1f1oa_ 1 EMSAIWTDENRFQAWLEVEILACEAWAELGVIPKEDVKVMRENASFDINRILEIEKDTRHDVVAFTRAVSESLGEERKWV 80 (408)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 94787790799999999999999999877999999999999847677999998874538858999999998738646341
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 H~G~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rL 160 (408)
T d1f1oa_ 81 HYGLTSTDVVDTALSYLLKQANDILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWHEEMKRNLERF 160 (408)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 67887899998999999998488888899999999999999828860146675177777408899999999999879999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~lGGA~Gt~~~~~~~~~~~~~~~lg~~~~~~~~~~~~rd~~~e~~~~l~~la~~l~kia~Dl~~~~s~~~ 240 (408)
T d1f1oa_ 161 KQAKAGIEVGKISGAVGTYANIDPFVEQYVCEKLGLKAAPISTQTLQRDRHADYMATLALIATSIEKFAVEIRGLQKSET 240 (408)
T ss_pred HHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99987650124460431346788558999999846767872278887788999987999999999987789998871344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~e~~~~~~~GSSiMP~K~NP~~~E~v~~~~~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~ 320 (408)
T d1f1oa_ 241 REVEEFFAKGQKGSSAMPHKRNPIGSENMTGMARVIRGYMMTAYENVPLWHERDISHSSAERIILPDATIALNYMLNRFS 320 (408)
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 61440366789875200035564079999987601111378998726431200304567776214009999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~l~~l~vn~e~m~~nl~~~~~~~~a~~~~~~Lv~~gl~~~~Ah~~v~~~~~~a~~~~~~l~e~l~~~~~i~~~Ls~eel 400 (408)
T d1f1oa_ 321 NIVKNLTVFPENMKRNMDRTLGLIYSQRVLLALIDTGLTREEAYDTVQPKAMEAWEKQVPFRELVEAEEKITSRLSPEKI 400 (408)
T ss_pred HHHHCCEECHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHCCCCHHHH
T ss_conf 87637865799999999730472689999999998299989999999999999999798899998706786668999999
Q ss_pred -------C
Q ss_conf -------5
Q 000920 1082 -------K 1082 (1223)
Q Consensus 1082 -------~ 1082 (1223)
+
T Consensus 401 ~~~lDp~~ 408 (408)
T d1f1oa_ 401 ADCFDYNY 408 (408)
T ss_pred HHHCCCCC
T ss_conf 98659998
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=30793.43 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~~rp~LvVt~~~~~A~~l~~dL~~~l~~~ 80 (408)
T d1c4oa1 1 TFRYRGPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFPEN 80 (408)
T ss_dssp CCCCCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 96214899998779999999999866997379856888789999999999859999999189999999999999864766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~v~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVv~~~a~l~~l~~~~~~~~~~~~l~~G 160 (408)
T d1c4oa1 81 AVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGLGDPREYRARNLVVERG 160 (408)
T ss_dssp EEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCCCCHHHHHHCCBC----
T ss_pred CEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCHHHHHCEEEEECC
T ss_conf 45567753422575456845554444421034677764446555320467659995112321678818876114885179
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~l~~~L~~~gY~r~~~V~~~GefsvRG~IlDIfp~~~~~P~RIeffgDeIdsIr~Fd~~tQrs~~~~~~~~i~P 240 (408)
T d1c4oa1 161 KPYPREVLLERLLELGYQRNDIDLSPGRFRAKGEVLEIFPAYETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFP 240 (408)
T ss_dssp --------------------------------------------------------------------------CCCBCC
T ss_pred CEEEHHHHHHHHHHHHCEECCEEECCCEEEEECCCEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEEEC
T ss_conf 89508999999997522214305336605730671276002457637899946733268997278896567655456522
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 a~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~Gie~yl~~f~~~~~~e~~~tL~ 320 (408)
T d1c4oa1 241 ATHYLSPEGLEEILKEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARYFTGKAPGEPPYTLL 320 (408)
T ss_dssp SCSCCCCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCCTTGGGGHHHHHTCCTTSCCCCGG
T ss_pred CCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHH
T ss_conf 41110135578888876566899999998737416777799999988877875188765777799865778899852466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 DYlp~~~lv~~De~~~~~~~~~~~~~e~~e~~~~lle~g~~lP~~~d~~~L~~ee~~~~~~q~i~~S~~p~~~e~~~~~~ 400 (408)
T d1c4oa1 321 DYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAHSGR 400 (408)
T ss_dssp GGSCTTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHHHHHCSE
T ss_pred HHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCHHHCCCCC
T ss_conf 51687508999582877999999998899999868757867885434798899999985598899808998422306885
Q ss_pred -------C
Q ss_conf -------5
Q 000920 1082 -------K 1082 (1223)
Q Consensus 1082 -------~ 1082 (1223)
+
T Consensus 401 ive~~~Rp 408 (408)
T d1c4oa1 401 VVEQIIRP 408 (408)
T ss_dssp EEEECSCT
T ss_pred EEEEEECC
T ss_conf 47996088
|
| >d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Family 10 polysaccharide lyase family: Family 10 polysaccharide lyase domain: Polygalacturonic acid lyase (pectate lyase) species: Azospirillum irakense [TaxId: 34011]
Probab=100.00 E-value=0 Score=30792.68 Aligned_cols=1 Identities=0% Similarity=0.205 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~a~~~t~ar~~~~p~~~~aAw~~y~a~s~~~~~a~~~~~~a~~~~g~~~p~~p~~~~~~~~~~l~~~~~wy~s 80 (408)
T d1r76a_ 1 AVIGMNEAASALTPSRVSSLPDTQRAAWQEYLARSEAQLSRDKASLAAELAPGQPLPPPPAEGKGADTMPLDKPAAWYTS 80 (408)
T ss_dssp CCCEECCCCCCCCHHHHSSCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCCCCCCSCCGGGSCSSSCGGGGGS
T ss_pred CCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 95554541011687776369878888986436665556766776666653248878999986643033671467444577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~eA~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La~ 160 (408)
T d1r76a_ 81 KAARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQ 160 (408)
T ss_dssp HHHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 79999999999853447998776653200110102232210134455300144555542246788686248999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~m~~~l~~l~~~~~~~~~~~~~~~~~r 240 (408)
T d1r76a_ 161 VVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIR 240 (408)
T ss_dssp HHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99973763214699999999999997317799964437887552343112755899799999999973465344787889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~r~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~~ps~~~~~aI~~av 320 (408)
T d1r76a_ 241 TRALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGV 320 (408)
T ss_dssp HHHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999999999987610488867486525835567344336677264003189999999717777755999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~lwaRfyel~tn~P~f~~Rd~~~~~~~~ei~~err~gy~w~~~~~~~~~~~ 400 (408)
T d1r76a_ 321 AWLNTSVIRDRAWVKSDQGYQLVTEQGAKPLWSRFYSLDGNKPVFGDRDKTIHDDVMGISQERRTGYAWYTTSPQKALSA 400 (408)
T ss_dssp HHHHHSCCCC---------------CCSSCCEESEECSSSCCBCEECTTSEEESCGGGSCHHHHSSSCCEESTTHHHHHH
T ss_pred HHHHHCCCCCCEEEECCCCCEEEECCCCCCCCEEEEECCCCCEEEECCCCCEECCHHHCCHHHCCCCCCCCCCHHHHHHH
T ss_conf 99986646785355348884242089998533256775899624657998653477662097628702427776999998
Q ss_pred -------C
Q ss_conf -------5
Q 000920 1082 -------K 1082 (1223)
Q Consensus 1082 -------~ 1082 (1223)
-
T Consensus 401 y~~w~~~~ 408 (408)
T d1r76a_ 401 FTKWEKRS 408 (408)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHCC
T ss_conf 89987449
|
| >d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: DNA polymerase I (Klenow fragment) species: Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]
Probab=100.00 E-value=0 Score=30792.84 Aligned_cols=1 Identities=100% Similarity=0.803 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~e~ll~~lE~~l~~vLa~ME~~Gi~vD~e~l~~~~~~l~~~~~~le~~i~~~~G~~fN~~S~~ql~~~Lf~~L~l~~~~ 80 (408)
T d2hhva2 1 EQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLK 80 (408)
T ss_dssp TCHHHHHTTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHTTSCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 97689999988899999999984969789999999999999999999999999699679999999999999855999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~r~~~k~~~~~~~~~~~~~~~~~gRih~~~~~~gt~TGR~s~~~Pnlqn~p~ 160 (408)
T d2hhva2 81 KTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPI 160 (408)
T ss_dssp BCSSSBCCCHHHHHHHGGGCHHHHHHHHHHHHHHHHHTTTHHHHHHSCTTTCEECCEEESSCCSSSCCEEESSCTTCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCEECCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 58788655335677750112579999999999888886533324305089985787200357654445557632146777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~r~~~~~~~g~~lv~~DysqiElRvlA~ls~D~~l~~~~~~g~D~h~~~a~~~~~~~~~~~~~~~R~~aK~~ 240 (408)
T d2hhva2 161 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAV 240 (408)
T ss_dssp SSHHHHGGGGGEECSSTTEEEEEEEESSHHHHHHHHHHTCHHHHHHHHTTCCHHHHHHHHHHTCCGGGCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHEEECCCCEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHH
T ss_conf 64335023312113047845887220215199999994888899987744215665455404777888070677889987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~fg~~YG~g~~~l~~~~~~~~~ea~~~~~~~~~~~p~i~~~~~~~~~~a~~~g~~~~~~grrr~~p~~~~~~~~~r~~~~ 320 (408)
T d2hhva2 241 NFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAE 320 (408)
T ss_dssp HHHHHHCCCHHHHHHHHTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSEEECTTCCEEECGGGGCSSHHHHHHHH
T ss_pred HHCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHH
T ss_conf 61533245115546101222788999999998640116255789999999828875467984158865566676767888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 r~a~N~~iQgsaAdi~k~a~~~~~~~l~~~~~~~~lv~~VHDEiv~ev~~~~~~~~~~~~~~~M~~~~~l~vPl~~d~~i 400 (408)
T d2hhva2 321 RMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHY 400 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEECSSEEEEEEEGGGHHHHHHHHHHHHHTSSCCSSCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 87760011489999999999999999984489978999763105899778999999999999995476788807865044
Q ss_pred -------C
Q ss_conf -------5
Q 000920 1082 -------K 1082 (1223)
Q Consensus 1082 -------~ 1082 (1223)
|
T Consensus 401 G~~W~e~k 408 (408)
T d2hhva2 401 GSTWYDAK 408 (408)
T ss_dssp ESSTTTCC
T ss_pred CCCHHHCC
T ss_conf 78967759
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30788.91 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~ 80 (408)
T d1n11a_ 1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN 80 (408)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
T ss_conf 98699999884899999999787899988999988999999868899999999885998877999899999999869977
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~ 160 (408)
T d1n11a_ 81 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 160 (408)
T ss_dssp HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 99999874100123211122024555430332222222211001001456464289999875989999999976998886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~ 240 (408)
T d1n11a_ 161 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ 240 (408)
T ss_dssp CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 78767409999998599999999986588400457789971024320210455555432001221247789999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g 320 (408)
T d1n11a_ 241 EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 320 (408)
T ss_dssp TTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT
T ss_pred HCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCCC
T ss_conf 08676754420022111112478997334543028489999999779965621023445302210058621355301333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~ 400 (408)
T d1n11a_ 321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRM 400 (408)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC----CCC
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 32234689999999999986889999999987889988799998999999983999999999998736564560003668
Q ss_pred -------C
Q ss_conf -------5
Q 000920 1082 -------K 1082 (1223)
Q Consensus 1082 -------~ 1082 (1223)
-
T Consensus 401 ~~~~~~~~ 408 (408)
T d1n11a_ 401 SFPETVDE 408 (408)
T ss_dssp CCCCCCCC
T ss_pred CCCHHCCC
T ss_conf 76410149
|
| >d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=30787.05 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~rGvNlGgWlv~E~wi~p~~f~~~~~~~~~~~~~~~de~~~~~~~G~~~~~~~~~~h~~~~ite~D~~ 80 (408)
T d1h4pa_ 1 YYDYDHGSLGEPIRGVNIGGWLLLEPYITPSLFEAFRTNDDNDEGIPVDEYHFCQYLGKDLAKSRLQSHWSTFYQEQDFA 80 (408)
T ss_dssp CCCTTSCTTSSCEEEEECTTSSSCCTTTSHHHHHTTCCCTTCCTTCCSSHHHHHHHHCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCCCCCCCCCEEEEEECCHHHCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 96666787798325886515540466667315554256666555542209999998687889999999885328899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~i~~~G~N~VRiPi~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gl~VilDlH~~pG~~~~~~~~~~~~~~~~~~~~~ 160 (408)
T d1h4pa_ 81 NIASQGFNLVRIPIGYWAFQILDDDPYVSGLQESYLDQAIGWARNNSLKVWVDLHGAAGSQNGFDNSGLRDSYKFLEDSN 160 (408)
T ss_dssp HHHHTTCCEEEEEEEGGGTCCCTTCCCCCSSHHHHHHHHHHHHHHTTCEEEEEEEECTTCSSCCGGGSSTTCCCTTSHHH
T ss_pred HHHHCCCCEEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99977998799854499934778887758158999999999999889989998378998776778877656645578168
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~ia~r~~~~~~~~~v~g~el~NEP~~~~~~~~~~~~~~~~~~~~~iR~~~~~~~~iv~~d~~~~~~~w~~~ 240 (408)
T d1h4pa_ 161 LAVTINVLNYILKKYSAEEYLDIVIGIELINEPLGPVLDMDKMKNDYLAPAYEYLRNNIKSDQVIIIHDAFQPYNYWDDF 240 (408)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHTTEEEEESCSCCCGGGSCHHHHHHHTHHHHHHHHHHTTCCCCCEEEECTTCCTTGGGGS
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH
T ss_conf 99999999999999631345664234412567665666557789999999999998634668569980687770145554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~vv~D~H~Y~~f~~~~~~~s~~~~i~~~~~~~~~~~~~~~p~~vGEws~a~td~~~~~n~~g~~~~~~ge~~ 320 (408)
T d1h4pa_ 241 MTENDGYWGVTIDHHHYQVFASDQLERSIDEHIKVACEWGTGVLNESHWIVCGEFAAALTDCIKWLNSVGFGARYDGSWV 320 (408)
T ss_dssp SCGGGTCCSEEEEEEECSCSSHHHHTCCHHHHHHHHHHHHHHHTTCSSEEEEEEECSCSSSCSTTTTCTTCCCTTBTCCC
T ss_pred CCCCCCCCEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEECCCC
T ss_conf 26677786367610223541377556775543311433344543156885243112331104441256554430104413
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~~g~c~~~~~~~~~~~~~~~~~r~~~eaQ~~~ye~~~GW~fWt~K~e~~~~W~~~~~~~~g~iP~~~~~~~~~ 400 (408)
T d1h4pa_ 321 NGDQTSSYIGSCANNDDIAYWSDERKENTRRYVEAQLDAFEMRGGWIIWCYKTESSLEWDAQRLMFNGLFPQPLTDRKYP 400 (408)
T ss_dssp BTTBCCCBCSCCTTTTCGGGCCHHHHHHHHHHHHHHHHHHTTTTEEEESCSCCSSCSTTCHHHHHHTTSSCSSTTCCSST
T ss_pred CCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCC
T ss_conf 67767655565446677001778899999999999999984589777852137999878889999787808896124687
Q ss_pred -------C
Q ss_conf -------5
Q 000920 1082 -------K 1082 (1223)
Q Consensus 1082 -------~ 1082 (1223)
.
T Consensus 401 ~~cg~~~~ 408 (408)
T d1h4pa_ 401 NQCGTISN 408 (408)
T ss_dssp TGGGSCCC
T ss_pred CCCCCCCC
T ss_conf 75567889
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=0 Score=30786.96 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~a~iR~~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llg 80 (408)
T d1t3ia_ 1 PSLAATVRQDFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN 80 (408)
T ss_dssp CCHHHHHGGGCGGGSCEETTEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 96278998758256666589986983185115799999999999998668987731519999999999999999999839
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 a~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~ 160 (408)
T d1t3ia_ 81 ARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLL 160 (408)
T ss_dssp CSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHC
T ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCC
T ss_conf 89821377505307898888764100226899889850354411211344433026825765420123320077764224
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~ 240 (408)
T d1t3ia_ 161 SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEE 240 (408)
T ss_dssp CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHH
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHH
T ss_conf 89966999965554443358089876565214730453130104643224334678648861432357887411121033
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~ 320 (408)
T d1t3ia_ 241 ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQ 320 (408)
T ss_dssp HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 45308965069854344455555557733543478578999999999999999708799999999877677665225764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L 400 (408)
T d1t3ia_ 321 LRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSL 400 (408)
T ss_dssp EEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 23468884446754189999589899999999966996996574225587886069960999799999999999999999
Q ss_pred -------C
Q ss_conf -------5
Q 000920 1082 -------K 1082 (1223)
Q Consensus 1082 -------~ 1082 (1223)
-
T Consensus 401 ~~~~~~f~ 408 (408)
T d1t3ia_ 401 QATIRFFS 408 (408)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHC
T ss_conf 99999759
|
| >d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: 2-oxoisovalerate dehydrogenase (E1B), PP module species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=30719.02 Aligned_cols=1 Identities=0% Similarity=-0.559 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~p~~~~~p~p~~rp~~~~d~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~vrvld~~g~~~~~~~~~l~~e~l~~~y 80 (407)
T d1qs0a_ 1 NEYAPLRLHVPEPTGRPGCQTDFSYLRLNDAGQARKPPVDVDAADTADLSYSLVRVLDEQGDAQGPWAEDIDPQILRQGM 80 (407)
T ss_dssp CCSCCCCCCCCCCSCCTTSCCCGGGSCCCCTTCSCCCCTTCCGGGGHHHHTSCBCCBCTTSCBCSGGGSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99898545799999999988885445568876679995568911244245670899899998998778998999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 r~M~~~R~~d~~~~~l~rqG~i~~~~~~~GqEA~~vg~~~aL~~~D~~f~~yR~~g~~larG~~~~~~~~e~~g~~~g~~ 160 (407)
T d1qs0a_ 81 RAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPL 160 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999999669730668998849999999986797798982545799999987619999999862457877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~Gr~~~~h~~~~~~~~~~~s~~vg~q~p~AvG~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvifv~eN 240 (407)
T d1qs0a_ 161 KGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVN 240 (407)
T ss_dssp TTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 78875443355323200025653346623356677776516760101245655433201888999873057626999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 N~~aist~~~~~~~~~~~~~~ra~~~Gi~~~~VDGnD~~avy~a~~~A~e~aR~g~gP~lIE~~TyR~~gHs~sDD~~~Y 320 (407)
T d1qs0a_ 241 NQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKY 320 (407)
T ss_dssp CSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGT
T ss_pred ECCCCCCCCHHHHCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCC
T ss_conf 02301364111200100688888861865278625439999999998889985389746997741018988765554345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 R~~~E~~~w~~~DPI~rl~~~Li~~g~~se~e~~~i~~ei~~eV~~A~~~Ae~~~~~~~~p~P~~~~lf~~VY~e~p~~l 400 (407)
T d1qs0a_ 321 RPADDWSHFPLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHL 400 (407)
T ss_dssp SCTTHHHHCTTCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCCCCSSGGGSSSSSSCCHHH
T ss_pred CCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHH
T ss_conf 89999998883897999999999879999999999999999999999999987221036899699999845225999889
Q ss_pred ------C
Q ss_conf ------5
Q 000920 1082 ------K 1082 (1223)
Q Consensus 1082 ------~ 1082 (1223)
.
T Consensus 401 ~eQ~~el 407 (407)
T d1qs0a_ 401 RRQRQEL 407 (407)
T ss_dssp HHHHHTC
T ss_pred HHHHHHC
T ss_conf 9999739
|
| >d1eu8a_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: D-maltodextrin-binding protein, MBP species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=30712.62 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~g~i~~~~~g~p~~~~~~~~~i~~F~~~~p~i~V~~~~~~~~~~~~~~~~~~~~~a~g~~PDi~~~~~~~~~~~~~~g 80 (407)
T d1eu8a_ 1 IEEGKIVFAVGGAPNEIEYWKGVIAEFEKKYPGVTVELKRQATDTEQRRLDLVNALRGKSSDPDVFLMDVAWLGQFIASG 80 (407)
T ss_dssp CCSSEEEEEECCSHHHHHHHHHHHHHHHHHSTTCEEEEEECCSSHHHHHHHHHHHHTTTCSSEEEEEEETTTHHHHHHHT
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCC
T ss_conf 97426999978976699999999999998886918999973684599999999999828999879998948899999879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~l~dL~~~~~~~~~~~~~~~~~~~~~~~~~dG~~y~iP~~~~~~~~~yNkdl~~~~G~~~p~~T~de~~~~~~~l~~~~~ 160 (407)
T d1eu8a_ 81 WLEPLDDYVQKDNYDLSVFFQSVINLADKQGGKLYALPVYIDAGLLYYRKDLLEKYGYSKPPETWQELVEMAQKIQSGER 160 (407)
T ss_dssp CBCCSHHHHHHHTCCGGGBCHHHHHHHTEETTEECCEEEEEEECEEEEEHHHHHHTTCCSCCSBHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHCCHHHHHHCHHHHHHHHCCCCEEECCCCCHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 93338576553113255404889987513454230276301234554161255542157988899999999999873045
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 240 (407)
T d1eu8a_ 161 ETNPNFWGFVWQGKQYEGLVCDFVEYVYSNGGSLGEFKDGKWVPTLNKPENVEALQFMVDLIHKYKISPPNTYTEMTEEP 240 (407)
T ss_dssp TTCTTCEEEECCCSSSHHHHHHHHHHHHTTTCCSEEEETTEEEECTTCHHHHHHHHHHHHHHHTSCCSCGGGGTTCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 76775221234555544302446789984488611024677521469999999999999999705657632000001577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~i~~~s~~~~~A~~fl~~l~s~e~ 320 (407)
T d1eu8a_ 241 VRLMFQQGNAAFERNWPYAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKALAWEFVKFVESYSV 320 (407)
T ss_dssp HHHHHHTTCEEEEEECTHHHHHHTSTTCTTTTCEEEECCCBCTTSCCCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHHH
T ss_pred HHHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCEECCCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 99998568745742572888765320145455534411125678654311304202676787549999999874002789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~eal~~~~~~ 400 (407)
T d1eu8a_ 321 QKGFAMNLGWNPGRVDVYDDPAVVSKSPHLKELRAVFENAVPRPIVPYYPQLSEIIQKYVNSALAGKISPQEALDKAQKE 400 (407)
T ss_dssp HHHHHHHTCCCBSBTTGGGSHHHHHHCTHHHHTHHHHHTCBCCCCCTTHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHCHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999851888662777739875611967999999997285278888789999999999999985999999999999999
Q ss_pred ------C
Q ss_conf ------5
Q 000920 1082 ------K 1082 (1223)
Q Consensus 1082 ------~ 1082 (1223)
+
T Consensus 401 ~~~~l~~ 407 (407)
T d1eu8a_ 401 AEELVKQ 407 (407)
T ss_dssp HHHHHTC
T ss_pred HHHHHCC
T ss_conf 9999576
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Probab=100.00 E-value=0 Score=30708.91 Aligned_cols=1 Identities=0% Similarity=-0.559 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~v~Y~i~~drF~~gd~~~~~~~~~~~~~~~~~~~~~~~~gGd~~gi~~kLdyl~~LGv~~I~L~Pi~~~~~~ 80 (407)
T d1qhoa4 1 SSSASVKGDVIYQIIIDRFYDGDTTNNNPAKSYGLYDPTKSKWKMYWGGDLEGVRQKLPYLKQLGVTTIWLSPVLDNLDT 80 (407)
T ss_dssp CTTSCCTTCCEEEECGGGTCCSCGGGSSCGGGTTCBCTTSCSTTSBCCCCHHHHHHTHHHHHHHTCCEEEECCCEEECSS
T ss_pred CCCHHHCCCEEEEECHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 97132057779996355506799877766555455577655667657848999998799999769988996965207765
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~gY~~~d~~~id~~~Gt~~d~k~Lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (407)
T d1qhoa4 81 LAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYF 160 (407)
T ss_dssp CSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEEEBTTBTTSTTTTCEEETTEEEECSS
T ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67889988774012224777778998899999999866302113331201455677622222223676556676555555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~~gvDGfR~D~~~~~~~~f~~~ 240 (407)
T d1qhoa4 161 DDATKGYFHHNGDISNWDDRYEAQWKNFTDPAGFSLADLSQENGTIAQYLTDAAVQLVAHGADGLRIDAVKHFNSGFSKS 240 (407)
T ss_dssp SCTTTCCBCCSCBCSCTTCHHHHHHSBCEETTTEEEEEBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 65555422246777786645342234456776655700332025678999876777865315643101101251467899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~i~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (407)
T d1qhoa4 241 LADKLYQKKDIFLVGEWYGDDPGTANHLEKVRYANNSGVNVLDFDLNTVIRNVFGTFTQTMYDLNNMVNQTGNEYKYKEN 320 (407)
T ss_dssp HHHHHHHHCCCEEEECCCCCCTTSTTHHHHHHHHHHSSCEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHCTTGGG
T ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999742685345565588735667777631135665412102577888887640220146788999875201345202
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~f~~nHD~~R~~~~~~~~~~~~~a~a~ll~~pGiP~iyyGdE~G~~g~~d~~~r~~~~~~~~~~~~~~~~~~L~~lR~ 400 (407)
T d1qhoa4 321 LITFIDNHDMSRFLSVNSNKANLHQALAFILTSRGTPSIYYGTEQYMAGGNDPYNRGMMPAFDTTTTAFKEVSTLAGLRR 400 (407)
T ss_dssp CEECSCCTTSCCHHHHCCCHHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTTTCCCCCCCCTTSHHHHHHHHHHHHHH
T ss_pred HCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 12000368854401124899999999999997279868863874397899895410137866688599999999999985
Q ss_pred ------C
Q ss_conf ------5
Q 000920 1082 ------K 1082 (1223)
Q Consensus 1082 ------~ 1082 (1223)
+
T Consensus 401 ~~paLr~ 407 (407)
T d1qhoa4 401 NNAAIQY 407 (407)
T ss_dssp HCHHHHH
T ss_pred HCHHHCC
T ss_conf 0984474
|
| >d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Catalase-peroxidase KatG domain: Catalase-peroxidase KatG species: Burkholderia pseudomallei [TaxId: 28450]
Probab=100.00 E-value=0 Score=30639.53 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~wp~~~~~~~l~~~~~~~~p~~~~~~y~~~~~~lD~~alk~di~~l~~~s~d~wpaD~G~ygp~lVRlAWHsA 80 (406)
T d1mwva1 1 NGTSNRDWWPNQLDLSILHRHSSLSDPMGKDFNYAQAFEKLDLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSA 80 (406)
T ss_dssp CCCCHHHHCTTSCCGGGGSCSCGGGCCSCTTCCHHHHHHTSCHHHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99886666831138741356876569898887789998750599999999999745321475534662168998888763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 gTYR~~D~RGGanGg~iRfaPe~sW~~N~~Ldkar~lLepIK~ky~~~IS~ADLivLAG~vAiE~~Gg~~i~f~~GR~d~ 160 (406)
T d1mwva1 81 GTYRTADGRGGAGEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGRADT 160 (406)
T ss_dssp TTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHHTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCCCCCBCCCCC
T ss_pred CCCCCCCCCCCCCCCEECCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCCCC
T ss_conf 24104579889987615775443578754679999999999997477754233256620788987369813777676664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Plaa~~~gliyvnpeg~~g~pd~~~~a~~lrd~f~rMglnd~E~vAL 240 (406)
T d1mwva1 161 WEPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGNPDPVAAARDIRDTFARMAMNDEETVAL 240 (406)
T ss_dssp SSCCCCCCCSCSSTTCCTTSTTCSEETTTEECTTCCSSSTTCSSSCTTSGGGCCCHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 33223556644443454456544566753334764444456666687645688970235899999987606870889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 i~G~HtlG~~hg~~~~~~~g~~pe~~~~~~~g~gw~~~~~~g~~~~~~~sg~eG~wT~~P~~~dN~yF~~Ll~~~we~~~ 320 (406)
T d1mwva1 241 IAGGHTFGKTHGAGPASNVGAEPEAAGIEAQGLGWKSAYRTGKGADAITSGLEVTWTTTPTQWSHNFFENLFGYEWELTK 320 (406)
T ss_dssp HHHHTTSCBCCBSSCGGGBCCCGGGSCGGGTTCCCCBCSTTSSGGGCBSSSCCCBCCSCTTSCCSHHHHHHHHSCEEEEE
T ss_pred HHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCEEEC
T ss_conf 86432211135788510047754567510025666666554577766778873676799761116888656447645520
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 s~~g~~q~~~~~~~~~~pda~~~s~~~~~~ml~tDlal~~Dp~~R~iaE~YA~d~e~F~~dFa~AW~KLm~~Dmgp~~~y 400 (406)
T d1mwva1 321 SPAGAHQWVAKGADAVIPDAFDPSKKHRPTMLTTDLSLRFDPAYEKISRRFHENPEQFADAFARAWFKLTHRDMGPRARY 400 (406)
T ss_dssp CTTCCEEEEETTCCSCEECSSCTTCEECCEECHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGC
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHC
T ss_conf 45655245645755577766588777476402443333029888999999962999999999999999974688980202
Q ss_pred -----C
Q ss_conf -----5
Q 000920 1082 -----K 1082 (1223)
Q Consensus 1082 -----~ 1082 (1223)
.
T Consensus 401 ~g~~~p 406 (406)
T d1mwva1 401 LGPEVP 406 (406)
T ss_dssp BSTTCC
T ss_pred CCCCCC
T ss_conf 699999
|
| >d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Catalase-peroxidase KatG domain: Catalase-peroxidase KatG species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=100.00 E-value=0 Score=30639.52 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~~~~~y~~~~~~~d~~~~~~di~~l~~~~~~~wpaD~g~~gP~lVRlAWHs 80 (406)
T d1itka1 1 KRPKSNQDWWPSKLNLEILDQNARDVGPVEDDFDYAEEFQKLDLEAVKSDLEELMTSSQDWWPADYGHYGPLFIRMAWHS 80 (406)
T ss_dssp CCCCCHHHHCTTSCCTHHHHTTSCCCSSCCTTCCHHHHHHHCCHHHHHHHHHHHHTCCBTTBCCGGGCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99986566586444773245687667989988678999876449999999999974433357544466313676555553
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 AgTYR~sD~RGGanGariRfaPe~sW~~N~~LdkAr~lLepIK~kyg~~IS~ADLivLAG~vAiE~~ggp~i~f~~GR~D 160 (406)
T d1itka1 81 AGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQKISWADLMILAGNVAIESMGFKTFGYAGGRED 160 (406)
T ss_dssp HTTCCTTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHHTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCSCCCBCCCC
T ss_pred HCCEECCCCCCCCCCCEECCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHEEHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 10011257888998762575666266777422999999999998627355443042000155564426863224557765
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 a~~~~~d~~~g~~~e~~~d~~~~~~~~l~~pl~a~~~~liyv~Peg~~g~~d~~~~a~~lrd~f~rMgl~d~E~VALigG 240 (406)
T d1itka1 161 AFEEDKAVNWGPEDEFETQERFDEPGEIQEGLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFDRMAMNDKETAALIAG 240 (406)
T ss_dssp CSSCCTTCCCCSCSSTTCCCSCSSTTCCCTTCSCSSTTCSSSCTTCGGGCCCHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf 55655554557655656666677655555430013235555688665677884115899999999824881999998750
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~htlG~~hg~~~~~~~~g~~Pe~~~~~~~g~g~~~~~~~g~g~~~~~sG~~G~wT~~p~~~~N~yF~~Ll~~~w~~~~s~ 320 (406)
T d1itka1 241 GHTFGKVHGADDPEENLGPEPEAAPIEQQGLGWQNKNGNSKGGEMITSGIEGPWTQSPTEWDMGYINNLLDYEWEPEKGP 320 (406)
T ss_dssp HTTSCEECBSSCHHHHBCCCGGGSCGGGTTCCCCBCC-------CBSSSCCEESSSSTTSCSSHHHHHHHHSCEEEEECT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEECC
T ss_conf 24246335788743357878655544346764457888775765545775544455434345612100135565410036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~g~~~~~~~~~~~~~~~pda~~~~~~~~~~ml~tDlaL~~Dp~~R~iaE~YA~d~e~F~~DFa~Aw~KL~~~D~gp~~ry 400 (406)
T d1itka1 321 GGAWQWAPKSEELKNSVPDAHDPDEKQTPMMLTTDIALKRDPDYREVMETFQENPMEFGMNFAKAWYKLTHRDMGPPERF 400 (406)
T ss_dssp TSCEEEEESSSTTTTCEECSSCTTCEECCCBCHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGC
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 77437526776544577756566775577503667876009878999999960999999999999999972678983345
Q ss_pred -----C
Q ss_conf -----5
Q 000920 1082 -----K 1082 (1223)
Q Consensus 1082 -----~ 1082 (1223)
.
T Consensus 401 ~gp~~p 406 (406)
T d1itka1 401 LGPEVP 406 (406)
T ss_dssp BSTTCC
T ss_pred CCCCCC
T ss_conf 799999
|
| >d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: Catalase-peroxidase KatG domain: Catalase-peroxidase KatG species: Synechococcus sp. pcc 7942 [TaxId: 1140]
Probab=100.00 E-value=0 Score=30638.71 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~wp~~~~~~~l~q~~~~~~p~~~~~~y~~~~~~ld~a~k~Dl~~l~~~s~~~wpaD~G~ygP~lVRlAWhsAgTYR 80 (406)
T d1ub2a1 1 STAEWWPKALNLDILSQHDRKTNPMGPDFNYQEEVQKLDAALKQDLQALMTDSQDWWPADWGHYGGLMIRLTWHAAGTYR 80 (406)
T ss_dssp CTTSSCTTSCCGGGGSCSCTTTCCSCTTCCHHHHHTTSCSTTHHHHHHHTTCCCTTSCCGGGCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 97555887768521015887679899997889999999999999999997455234755457621377865554014321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~sD~RGGanGgriRfaP~~sW~~N~~LdkAr~lL~pIK~ky~~~IS~ADLivLAG~vAiE~agg~ti~f~~GR~Da~~~~ 160 (406)
T d1ub2a1 81 IADGRGGAGTGNQRFAPLNSWPDNTNLDKARRLLWPIKQKYGNKLSWADLIAYAGTIAYESMGLKTFGFAFGREDIWHPE 160 (406)
T ss_dssp TTTCCCSSTTCGGGSTTGGGCGGGTTHHHHHHHTHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCSSCC
T ss_pred CCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 67898899877446822304566318899999998887642876531137776129999873498335677766666776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~dv~~g~~~e~l~~~~~~~~~~~~~~~l~~pl~a~~~~liyvnP~g~~g~pd~~~~a~~ir~~f~rM~mnd~E~vAL~aG 240 (406)
T d1ub2a1 161 KDIYWGPEKEWFPPSTNPNSRYTGDRELENPLAAVTMGLIYVNPEGVDGNPDPLKTAHDVRVTFARMAMNDEETVALTAG 240 (406)
T ss_dssp TTCCCCSCSSSSCCSSSTTCSEETTTEECTTCCSSSTTCSSCCTTSBTTBCCHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 55455554455788767544467754322465420157311177534678974555788655677753788998642153
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~ht~Gk~hg~~~~~~~g~~p~g~~~e~~g~~~~n~~~~g~g~~t~tSg~eg~wt~~p~~~dn~yF~~ll~~~~W~~~ks~ 320 (406)
T d1ub2a1 241 GHTVGKCHGNGNAALLGPEPEGADVEDQGLGWINKTQSGIGRNAVTSGLEGAWTPHPTQWDNGYFAVCSLNYDWELKKNP 320 (406)
T ss_dssp HHTSCCBCBCSCSTTBCCCGGGSCGGGTTCCSCBCSSCCSGGGCBSSSCCBBSSSCTTSCSSTTTTTTTSSSCEEEEECT
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHCCCCC
T ss_conf 31002136777501237655565410067766777773646666688888777656443467412333205640102453
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~ga~q~~~~~~~~~~~~~~~~d~s~~~~~~mt~tDLal~~Dp~~R~iaE~Ya~d~e~F~~dFa~AW~KL~~~Dmgp~~~~ 400 (406)
T d1ub2a1 321 AGAWQWEPINPREEDLPVDVEDPSIRRNLVMTDADMAMKMDPEYRKISERFYQDPAYFADVFARAWFKLTHRDMGPKARY 400 (406)
T ss_dssp TSCEEEEESSCCGGGSCBCSSCTTSBCCBCBCHHHHHHHHSHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTSCSGGGC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHC
T ss_conf 30114455675323477755477777577503567763108878999999971999999999999999971677976531
Q ss_pred -----C
Q ss_conf -----5
Q 000920 1082 -----K 1082 (1223)
Q Consensus 1082 -----~ 1082 (1223)
.
T Consensus 401 ~g~~~p 406 (406)
T d1ub2a1 401 IGPDVP 406 (406)
T ss_dssp BSTTCC
T ss_pred CCCCCC
T ss_conf 799999
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=30637.85 Aligned_cols=1 Identities=0% Similarity=0.172 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 80 (406)
T d1u2za_ 1 SSTFVDWNGPCLRLQYPLFDIEYLRSHEIYSGTPIQSISLRTNSPQPTSLTSDNDTSSVTTAKLQSILFSNYMEEYKVDF 80 (406)
T ss_dssp CCBSSCTTSCEEECCSCCBCHHHHHHCCCCCCCCCCGGGCCC------------------EEEEECSSCTTCEEEEECCS
T ss_pred CCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCCCCEECCCCCHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEEEC
T ss_conf 97532587743465553020665310553379877772000477771443068876898605887324666103788850
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~p~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~i~~~~~~~~~~~l~~~~ 160 (406)
T d1u2za_ 81 KRSTAIYNPMSEIGKLIEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAINLYNKMIREIPRQRIIDHLETID 160 (406)
T ss_dssp SSCCSSSCHHHHHHHHHHHHHHTTCCTTHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 56524569899999999999986488489999999999999998742799999999999999999866615988876267
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~i~~~~y~r~v~p~~~~L~~Y~~fs~~vYGEl~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~ 240 (406)
T d1u2za_ 161 KIPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGC 240 (406)
T ss_dssp EEEHHHHHHHHHHHHHHHTGGGGGGGCSCCSSGGGCCCCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf 88889999998886446036886776266789977403478899999999838999998996789875999999997699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~ 320 (406)
T d1u2za_ 241 ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKIL 320 (406)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 76999848999999999999987555555303566520334404221654224545643999733167367999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 r~LKPGGrIVs~~~~~~~~~~it~r~~~~~~~il~v~~~~~~~~sVSWt~~~v~yyl~tv~~~i~~~~f~~~~~~R~~r~ 400 (406)
T d1u2za_ 321 QTAKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVSWTHSGGEYYISTVMEDVDESLFSPAARGRRNRG 400 (406)
T ss_dssp TTCCTTCEEEESSCSSCTTCCCCSSSTTCGGGGEEEEEEECCTTCBTTBSSCCEEEEEEECSSCCGGGSCCC------C-
T ss_pred HHCCCCCEEEEECCCCCCCHHHHHHCCCCCHHCCCCHHHCCCCCCCEEECCCCCEEHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 72699828999114678740145520353000033132145336633466987653739998888721462113553347
Q ss_pred -----C
Q ss_conf -----5
Q 000920 1082 -----K 1082 (1223)
Q Consensus 1082 -----~ 1082 (1223)
-
T Consensus 401 ~P~kyt 406 (406)
T d1u2za_ 401 TPVKYT 406 (406)
T ss_dssp --CCBC
T ss_pred CCCCCC
T ss_conf 888889
|
| >d1ei6a_ c.76.1.4 (A:) Phosphonoacetate hydrolase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Alkaline phosphatase-like superfamily: Alkaline phosphatase-like family: Phosphonoacetate hydrolase domain: Phosphonoacetate hydrolase species: Pseudomonas fluorescens [TaxId: 294]
Probab=100.00 E-value=0 Score=30636.09 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~vi~I~iD~l~~~~l~~~~~~~~TPnid~La~~G~~f~~~~~~~~~c~PsrasllTG~yp~~hG 80 (406)
T d1ei6a_ 1 TNLISVNSRSYRLSSAPTIVICVDGCEQEYINQAIQAGQAPFLAELTGFGTVLTGDCVVPSFTNPNNLSIVTGAPPSVHG 80 (406)
T ss_dssp CCEEEETTEEEECCSSCEEEEECTTCCHHHHHHHHHTTSCHHHHHGGGTSEEEEEECCSSCCHHHHHHHHHHTSCHHHHC
T ss_pred CCEEEECCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCHHHCC
T ss_conf 96484786104678998899997899978874005557991899999689348322049971589999999678988879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (406)
T d1ei6a_ 81 ICGNFFFDQETQEEVLMNDAKYLRAPTILAEMAKAGQLVAVVTAKDKLRNLLGHQLKGICFSAEKADQVNLEEHGVENIL 160 (406)
T ss_dssp CCSSEEEETTTTEEEECCSGGGCCSCCHHHHHHHTTCCEEEEESSHHHHHHHTTTCCSEEEESTTCSSCCHHHHSCCCHH
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 57775446554410100332123456544311123465302114565645555430321456567786523444543221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~i~~l~~~~~~~~~~~d 240 (406)
T d1ei6a_ 161 ARVGMPVPSVYSADLSEFVFAAGLSLLTNERPDFMYLSTTDYVQHKHAPGTPEANAFYAMMDSYFKRYHEQGAIVAITAD 240 (406)
T ss_dssp HHHTCCCCCSSSTHHHHHHHHHHHHHHHTTCCSEEEEECCCHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 10233222123332102444432220247884201123433334456899889999999999999999867966999934
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (406)
T d1ei6a_ 241 HGMNAKTDAIGRPNILFLQDLLDAQYGAQRTRVLLPITDPYVVHHGALGSYATVYLRDAVPQRDAIDFLAGIAGVEAVLT 320 (406)
T ss_dssp CCCEECBCTTSCBCEEEHHHHHHHHHCTTSEEEECTTSCTTCCBGGGCBSEEEEEECTTSCHHHHHHHHHTSTTEEEEEE
T ss_pred CCCCCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHHHCC
T ss_conf 54345675223320232144201110110000245422210000122320234313327899999998752365223304
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~~~~~~~igdii~~sd~g~~lg~~~~~~~~s~~~~~~~~hGg~~e~~VPlIi~~P~~~~~~~~~i~~~Di~d~ 400 (406)
T d1ei6a_ 321 RSQACQRFELPEDRIGDLVVLGERLTVLGSAADKHDLSGLTVPLRSHGGVSEQKVPLIFNRKLVGLDSPGRLRNFDIIDL 400 (406)
T ss_dssp HHHHHHHHTCCGGGSCSEEEEECTTCEEESCTTTCBGGGCCSCCEECCSGGGCEEEEEESSCBCCCC--CCCBGGGHHHH
T ss_pred HHHHHHHCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECHHHH
T ss_conf 98999973999787466999956996877455445433467767565651147308799558656777884325061887
Q ss_pred -----C
Q ss_conf -----5
Q 000920 1082 -----K 1082 (1223)
Q Consensus 1082 -----~ 1082 (1223)
.
T Consensus 401 ~~~~~~ 406 (406)
T d1ei6a_ 401 ALNHLA 406 (406)
T ss_dssp HHHCBC
T ss_pred HHHHCC
T ss_conf 763039
|
| >d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Thermophilic metalloprotease-like superfamily: Thermophilic metalloprotease-like family: Thermophilic metalloprotease (M29) domain: Aminopeptidase T species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=30634.62 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~L~k~A~llV~~~l~vqkGe~VlI~a~~~~~~Lvral~e~A~~~GA~pv~v~~~d~~i~r~~~~~a~~e~l~~~p~ 80 (406)
T d2ayia1 1 AFKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVIYGDQELARKRLALAPEEGLDKAPA 80 (406)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEECCHHHHHHHHHHSCTTCTTCCCH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCHHHHHHCCH
T ss_conf 96799999999999971268999989997166569999999999998699738996067699999996399988743624
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~a~i~I~~~np~~l~~vdp~ki~~~~ka~~~~~~~~~~~~~~~~~~W~i~~~P~~~~A~~~~~~l~~ 160 (406)
T d2ayia1 81 WLYEGMARAFREGAARLAVSGSDPKALEGLPPEKVGRAQKANARAYKPALEAITEFVTNWTIVPFAHPGWARAVFPGLPE 160 (406)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSSCBCBEECCCTTTHHHHCCCSCH
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCH
T ss_conf 46889999997189289961698520126996899999998899879999998536566399975782177661789767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~e~~~~l~d~if~~~~ld~~dp~~~w~~~~~~l~~~~~~L~~~~~~~~~~~~~GTDL~~~i~~~~~w~~~~~~~~~g~~~ 240 (406)
T d2ayia1 161 EEAVRRLWEAIFQATRADQEDPIAAWEAHNRALHEKVAYLNARRFHALHFKGPGTDLVVGLAEGHLWQGGATATKGGRLC 240 (406)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECCTTBCCEESSCCCSSSCCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 89999999999976346651079999999999999999985165148996389369999945884015887642278767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~NlP~GEvftaP~e~svnG~i~~d~~~~~~g~l~~~i~l~f~~G~vv~~~~~~~~~~l~~~~~~d~~a~~lgE~~ig~n 320 (406)
T d2ayia1 241 NPNLPTEEVFTAPHRERVEGVVRASRPLALGGTLVEGIFARFERGFAVEVRAEKGEEVLRRLLDTDEGARRLGEVALVPA 320 (406)
T ss_dssp CSBSSCCCEEECCCTTCEEEEEECSSCEEETTEEEBSCEEEEETTEEEEEECSBCHHHHHHHTTSSSGGGSEEEEECCCT
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCCCCCEECCCCEEEEECCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEEECC
T ss_conf 68899832585020484211998045454433303473799948879997557649999987624867636788876047
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~~~~~n~L~DE~gt~Hia~G~~Y~~~~~g~~~~~~~~~~g~n~s~~H~D~~~~~~~~~~dgv~~dG~~~~i~~ 400 (406)
T d2ayia1 321 DNPIAKTGLVFFDTLFDENAASHIAFGQAYQENLEGRPSGEAFRKRGGNESLVHVDWMIGSEEMDVDGLYEDGTRTPLMR 400 (406)
T ss_dssp TSHHHHHTCCCCCHHHHHTTSCEEEEECCCGGGBCC---CCSHHHHTCCCCSCEEEEECCCTTCEEEEECTTSCEEEEEE
T ss_pred CCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEE
T ss_conf 88540345111330587478604766876411134788756763079806644786713887178999984891889988
Q ss_pred -----C
Q ss_conf -----5
Q 000920 1082 -----K 1082 (1223)
Q Consensus 1082 -----~ 1082 (1223)
.
T Consensus 401 ~G~f~i 406 (406)
T d2ayia1 401 RGRWVV 406 (406)
T ss_dssp TTEECC
T ss_pred CCEEEC
T ss_conf 989969
|
| >d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase {Thermoanaerobacterium [TaxId: 28895]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Thermoanaerobacterium [TaxId: 28895]
Probab=100.00 E-value=0 Score=30630.53 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~viY~i~~drF~~g~~~~d~~~~~~~~~~~~~~~~~gGdl~Gi~~kLd~~YLk~LGv~~I~L~Pi~ 80 (406)
T d3bmva4 1 ASDTAVSNVVNYSTDVIYQIVTDRFVDGNTSNNPTGDLYDPTHTSLKKYFGGDWQGIINKINDGYLTGMGVTAIWIPQPV 80 (406)
T ss_dssp CCTTSTTCTTCCTTCCEEECCGGGTCCCCGGGSCCGGGBCTTSCSTTSBCCCCHHHHHHHHHTSTTGGGTCCEEEECCCE
T ss_pred CCCCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCEEEECCCC
T ss_conf 98766678888753708996123306899777878876577777657667858999987448888987597789979753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~gY~~~d~~~vdp~~Gt~~dfk~LV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~ 160 (406)
T d3bmva4 81 ENIYAVLPDSTFGGSTSYHGYWARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYD 160 (406)
T ss_dssp EECCCCEEETTTEEECSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEE
T ss_pred CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCC
T ss_conf 56544567777789712127665235456844461899999999997436431365201566566522012034675356
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~~~~~giDGfR~D~~~~~~~~~~ 240 (406)
T d3bmva4 161 NGTLLGGYTNDTNGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVWLDMGIDGIRLDAVKHMPFGWQ 240 (406)
T ss_dssp TTEEEECSTTCTTCCBCCSCBCCCSSHHHHHHSBSTTEEEBCTTSHHHHHHHHHHHHHHHHTTCCEEEESCGGGSCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 87411466545566434556764445666311245554210226689999999887777530777532245444632568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (406)
T d3bmva4 241 KNFMDSILSYRPVFTFGEWFLGTNEIDVNNTYFANESGMSLLDFRFSQKVRQVFRDNTDTMYGLDSMIQSTASDYNFIND 320 (406)
T ss_dssp HHHHHHHHHHSCCEEEECCCCCTTCCCHHHHHHHHHSSSEEBCHHHHHHHHHHHTSCSSCHHHHHHHHHHHHHHCTTGGG
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99988888753212334333455100022110247776500122023788876405740267789987620013443344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~fl~nHD~~R~~~~~~~~~~~~a~~~~lt~pG~P~IyyGdE~g~~g~~dp~~r~~~~~~~~~~~~~~~~~~Li~lRk~ 400 (406)
T d3bmva4 321 MVTFIDNHDMDRFYNGGSTRPVEQALAFTLTSRGVPAIYYGTEQYMTGNGDPYNRAMMTSFNTSTTAYNVIKKLAPLRKS 400 (406)
T ss_dssp CEECSCCSSSCCSCCSSCSHHHHHHHHHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCCTTSHHHHHHHHHTTHHHH
T ss_pred HCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 32566677646660688799999999999971797777657653868998824440489877896999999999999863
Q ss_pred -----C
Q ss_conf -----5
Q 000920 1082 -----K 1082 (1223)
Q Consensus 1082 -----~ 1082 (1223)
.
T Consensus 401 ~paLry 406 (406)
T d3bmva4 401 NPAIAY 406 (406)
T ss_dssp CHHHHH
T ss_pred CHHHCC
T ss_conf 944159
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=30565.77 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~l~~~D~ei~~~i~~e~~rq~~~l~LiaSEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~ 80 (405)
T d1kl1a_ 1 MKYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQ 80 (405)
T ss_dssp CCHHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 93155549999999999999997691586067767899999856752475768899964607762299999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 lF~a~~anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~ 160 (405)
T d1kl1a_ 81 LFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKAR 160 (405)
T ss_dssp HHCCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHH
T ss_pred HHCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCHHCCCCCHHHHHHHHH
T ss_conf 83999414414676588999999844899878873035566445676223364588877732313025313999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGPrgg~I~~~~ 240 (405)
T d1kl1a_ 161 LHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQE 240 (405)
T ss_dssp HHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSCEEEEECH
T ss_pred HHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCEEECCHHHHHHHHHHHHCCCHHHHHHHEECCCCCCCCCCCCCEEEECC
T ss_conf 62765377523146665586999998764198786035667665443126984652110323355334677773587500
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~ggTd~H~vlvdl~~~ 320 (405)
T d1kl1a_ 241 QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQ 320 (405)
T ss_dssp HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGG
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCCC
T ss_conf 35777776508653468415678899999998738388999999999888999998648943435887664563243446
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~~~~~~~~~~ir~~V 400 (405)
T d1kl1a_ 321 QLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVGSEQALEEARQRV 400 (405)
T ss_dssp TCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 77499999999980959767869899999998872265688998589988999999999999996589679999999999
Q ss_pred ----C
Q ss_conf ----5
Q 000920 1082 ----K 1082 (1223)
Q Consensus 1082 ----~ 1082 (1223)
-
T Consensus 401 ~~L~~ 405 (405)
T d1kl1a_ 401 AALTD 405 (405)
T ss_dssp HHHHC
T ss_pred HHHHC
T ss_conf 99639
|
| >d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Proton glutamate symport protein superfamily: Proton glutamate symport protein family: Proton glutamate symport protein domain: Proton glutamate symport protein species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=30562.92 Aligned_cols=1 Identities=0% Similarity=-0.692 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 l~~rili~lv~Gi~~G~~~~~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~L~~~~~gkl~~~ti~~~l~ 80 (405)
T d2nwwa1 1 VLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLL 80 (405)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCTTTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHH
T ss_conf 98899999999999999972222127899999989999999999999999999999999745501002089999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 tt~iA~~igl~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~l~~~iP~Ni~~al~~~~~l~vi~fail~Gial~~~~~~ 160 (405)
T d2nwwa1 81 TSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNS 160 (405)
T ss_dssp HHHHHHHHHHHHHHHSCSCCCCCCCCCCCCCCCCCCCCHHHHHGGGSCSCHHHHHHSCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999860133322000000014311001899999705587899964678630356788889999985022
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~l~~~~~~l~~v~~kii~~im~laPigvf~l~a~~~~~~g~~~l~~l~~~~~~~~~~~~l~~~~~~~i~~ 240 (405)
T d2nwwa1 161 ENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLL 240 (405)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00345667889999999999999999898887778889999998753334555567899999999999999888889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~p~~~~~~~~~~~~~Af~T~SS~atlP~~~~~~~~~gv~~~i~~fvlPlgatin~~G~a~~~~~~~~f~a~~~g~ 320 (405)
T d2nwwa1 241 KIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGS 320 (405)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHHCCTGGGHHHHHHHHHTTTCCTTTHHHHTTTTSSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHCCCCHHHHHHHCCCHHHEEEECCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCHHEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 98289848884322310421200166556617899999975999352010236302100364124899999999987197
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~l~~~~~~~~~~~~~l~s~g~~gvPg~~~v~~~~vl~~~glP~~~~~~~~~i~li~~id~l~D~~rT~~Nv~gd~~~a~i 400 (405)
T d2nwwa1 321 HLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAI 400 (405)
T ss_dssp CCCSSTTHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHE
T ss_conf 99989999999999999986178616799999999998699886410565888887498550550898828776588841
Q ss_pred ----C
Q ss_conf ----5
Q 000920 1082 ----K 1082 (1223)
Q Consensus 1082 ----~ 1082 (1223)
-
T Consensus 401 v~k~e 405 (405)
T d2nwwa1 401 VAKTE 405 (405)
T ss_dssp HHHHC
T ss_pred EECCC
T ss_conf 33579
|
| >d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Pyruvate phosphate dikinase, N-terminal domain domain: Pyruvate phosphate dikinase, N-terminal domain species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=0 Score=30562.33 Aligned_cols=1 Identities=0% Similarity=-0.891 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~lVGGK~AnLgel~~~GipVP~GFvITt~Ay~~Fl~~n~L~~~i~~~i~~~l~~~~~~~ 80 (405)
T d1h6za3 1 VAKKWVYYFGGGNADGNKNMKELLGGKGANLAEMVNLGIPVPPGFTITTEACKTYQETETIPQEVADQVRENVSRVEKEM 80 (405)
T ss_dssp CCCCCEEEECSSSCSCCTTCHHHHHHHHHHHHHHHHTTCCCCCEEEECHHHHTTTTTSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99747997399865578455750568899899999786999998886299999999738976889999999997664776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 160 (405)
T d1h6za3 81 GAKFGDPANPLLFSVRSGAAASMPGMMDTVLNLGLNKVTVDAWVRRAPRLERFVYDSYRRFITMYADIVMQVGREDFEEA 160 (405)
T ss_dssp CCBTTCTTSBCCEEEEESCTTC-----CCCCSBSCCHHHHHHHGGGCGGGHHHHHHHHHHHHHHHHHHHHCCCSTTTSTT
T ss_pred HHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 66523543115553023210122100455666665456689998742550566899999999763011246305678898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~v~~S~~~~~a~~yr~~~~~~~~~~~~ 240 (405)
T d1h6za3 161 LSRMKERRGTKFDTDLTASDLKELCDGYLELFELKTGCSFPQDPVMQLFAAIKAVFRSWGNPRATIYRRMNNITGLLGTA 240 (405)
T ss_dssp THHHHHHHSCSCGGGCCHHHHHHHHHTTHHHHHHHSSSCCCCCHHHHHHHHHHHHHHTTTCTTTTTHHHHSCCCSCCCCC
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHH
T ss_conf 88888751651124572888887888999866541387541054677678888987620572377778761754113331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~v~~~~~~~~~~sgv~~t~~~~tG~~~~~~~~~~~g~~~~vv~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (405)
T d1h6za3 241 VNVQAMVFGNINDRSATGVAFSRSPSTGENFFFGEYLVNAQGEDVVAGIRTPQQINHSLSLRWAKAHGVGEEERRKRYPS 320 (405)
T ss_dssp EEEEECCCSCSSTTCEEEEEESSCSSSCCSSCEEEEEESCCTTHHHHCCSCCEESSHHHHHHHHTTSSCCHHHHHHHSCC
T ss_pred HEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCEEEEECCCCHHHCCCCCEECCCCCCCC
T ss_conf 11234542135665443334556777898753368646676233213765770466403310100145321104665545
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~l~~e~~~~La~l~~~iE~~fg~PqDIEWAi~dg~L~ILQaRPv~~t~~a~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 400 (405)
T d1h6za3 321 MEEAMPENYRLLCDVRKRLENHYRDMQDLEFTVQDGRLWLLQCRNGKRTIHAAVRIAIDMVNEGLISREEAVLRIDPYQV 400 (405)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHTSCEEEEEEEETTEEEEEEEEECCCCHHHHHHHHHHHHHHTSSCHHHHHHTSCGGGG
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHH
T ss_conf 55528799999999999999982998204999989989999766788668889999999997699798999872798278
Q ss_pred ----C
Q ss_conf ----5
Q 000920 1082 ----K 1082 (1223)
Q Consensus 1082 ----~ 1082 (1223)
.
T Consensus 401 ~~~~~ 405 (405)
T d1h6za3 401 DHLMH 405 (405)
T ss_dssp GGGGC
T ss_pred HHHCC
T ss_conf 67448
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30555.09 Aligned_cols=1 Identities=0% Similarity=-1.855 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 m~d~~~vR~~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~ 80 (405)
T d1jf9a_ 1 IFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN 80 (405)
T ss_dssp CCCHHHHHHTCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHCHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98979998758211467189982997382006899999999999998666987630409999999999999999999839
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i 160 (405)
T d1jf9a_ 81 ARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLF 160 (405)
T ss_dssp CSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHC
T ss_conf 98755430237688897788842331026789989998375331699999999973968999877998838799999753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G~g~l~v~~~ 240 (405)
T d1jf9a_ 161 DEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEA 240 (405)
T ss_dssp CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSSCEEEEECHH
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEECCCCEECCCCCCCHHHCCCCEEECCCCCCCCCCCCEEEEECHH
T ss_conf 69957999966777655438467766678873975641554000015653333078646613230156887510242265
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~ 320 (405)
T d1jf9a_ 241 LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVP 320 (405)
T ss_dssp HHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 54036863223565675344555655553224307787677899999999999981849999999999988776651388
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~~r~~ivsf~~~~~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i 400 (405)
T d1jf9a_ 321 DLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRI 400 (405)
T ss_dssp TEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 65556876767479997389899999999987892997660321567886099988999788999999999999999999
Q ss_pred ----C
Q ss_conf ----5
Q 000920 1082 ----K 1082 (1223)
Q Consensus 1082 ----~ 1082 (1223)
-
T Consensus 401 ~r~~~ 405 (405)
T d1jf9a_ 401 HRLLG 405 (405)
T ss_dssp HHHHC
T ss_pred HHHCC
T ss_conf 99609
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=30554.92 Aligned_cols=1 Identities=0% Similarity=-2.554 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~g~~~~~~~~~~~~re~v~v~~~~dt~rDG~~d~l~~di~rP~~~~k~Pvil~~sPY~~~~~~~~~~~~~~~ 80 (405)
T d1lnsa3 1 LDNHYHFFNDKSLATFDSSLLEREVLWVESPVDSEQRGENDLIKIQIIRPKSTEKLPVVMTASPYHLGINDKANDLALHD 80 (405)
T ss_dssp CCSSCCEETTEECSCSCGGGCEEEEEEEECSCCTTCSSSCCEEEEEEEECCCSSCEEEEEEECSSTTCCCHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 98855433783413205887568688982888878899874799999742889974599996786787766544322345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D~RG~g~S~G~~~~~~~~ 160 (405)
T d1lnsa3 81 MNVELEEKTSHEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQTSGDYQ 160 (405)
T ss_dssp CCCCCCCCCSEECCCCCCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCCTTSHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 65433445543333233454222234555665555654455664445568898679879997888788999755468866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 e~~D~~~~IeWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G 240 (405)
T d1lnsa3 161 QIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENG 240 (405)
T ss_dssp HHHHHHHHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHCCC
T ss_conf 63009999999871563333433443211454387458995289999999998608865419994476655888754178
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~~~~~I~vP~L~i~G 320 (405)
T d1lnsa3 241 LVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHG 320 (405)
T ss_dssp SBCCCTTCTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCHHHHHHCCCHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCEEEEEE
T ss_conf 40035421255666653146655555400221115565154203455541233233555536853565137988899975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 w~D~~v~~~~~~~~y~al~~~~~~~Lilgpw~H~~~~~~~~~d~~~~~~~wFD~~LkG~~ng~~~~~~~~~~~~g~~~W~ 400 (405)
T d1lnsa3 321 LQDWNVTPEQAYNFWKALPEGHAKHAFLHRGAHIYMNSWQSIDFSETINAYFVAKLLDRDLNLNLPPVILQENSKDQVWT 400 (405)
T ss_dssp TTCCSSCTHHHHHHHHHSCTTCCEEEEEESCSSCCCTTBSSCCHHHHHHHHHHHHHTTCCCCCCCCSEEEECTTSSSCEE
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 06889897899999999873799379995887899765555369999999999986889889898987999737999741
Q ss_pred ----C
Q ss_conf ----5
Q 000920 1082 ----K 1082 (1223)
Q Consensus 1082 ----~ 1082 (1223)
-
T Consensus 401 ~~~~W 405 (405)
T d1lnsa3 401 MMNDF 405 (405)
T ss_dssp EESCS
T ss_pred CCCCC
T ss_conf 08989
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=30483.35 Aligned_cols=1 Identities=100% Similarity=1.201 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~P~Pi~~~~Dp~dR~v~~~P~~~~pyD~R~~i~g~~~~~~~~~~i~D~~sF~E~~~~~a~svVtG~ARL~G~PVGVIAn 80 (404)
T d1uyra2 1 NMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIGV 80 (404)
T ss_dssp TSCCCCCCCSSCSSSCCCCCCCSSSCCCHHHHHHCEEETTEEECCSSCTTCCEEESTTSCTTEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEHHHCCCCCEEEEEEEECCEEEEEEEE
T ss_conf 98989789999800135657899999777999846755555445010287025520046786699999999999999986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 e~~~~~g~i~aDpa~~~s~~~~~~~~Ggv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~pGF~~G~~~E~~gilr~GA~i 160 (404)
T d1uyra2 81 ETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFI 160 (404)
T ss_dssp CCSCEEEEECCCTTCSSCCCEEEEECTTCBCHHHHHHHHHHHHHHHTTSCCCEEECCCCCCBCC------CTHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 76102687568755653055565404786685579999999998652346645886137766676899987899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 v~A~~~~~vP~i~vI~~~g~~~GGa~vv~~~~~~~~~~~~yAwP~a~~gVm~pEGav~I~fr~e~~~~~~~r~d~~~~el 240 (404)
T d1uyra2 161 VDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRLDDKYREL 240 (404)
T ss_dssp HHHHHTCCSCEEEEECTTCEEEHHHHHTTCGGGGTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHC-------
T ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHEECCHHHHCCHHHHHHHHHHH
T ss_conf 99998548997999957864130234103676677655488878654106786654321033021113265568999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~l~~~~~a~e~~~~l~~~i~~re~~l~p~y~qvA~~Fadlhdt~~Rm~~kG~I~~iv~w~~tR~~~~~~lrr~l~e~~ 320 (404)
T d1uyra2 241 RSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNEEY 320 (404)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTSSHHHHHHHTCSSEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98725755587789999999999999862789999999998508687898568466122878859999999999874999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (404)
T d1uyra2 321 LIKRLSHQVGEASRLEKIARIRSWYPASVDHEDDRQVATWIEENYKTLDDKLKGLKLESFAQDLAKKIRSDHDNAIDGLS 400 (404)
T ss_dssp HHHTTTTCCSSCCHHHHHHHHHTTSCTTSCTTCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99999985777787999999999987346865639999999847799999999998999999999997539088999999
Q ss_pred ---C
Q ss_conf ---5
Q 000920 1082 ---K 1082 (1223)
Q Consensus 1082 ---~ 1082 (1223)
+
T Consensus 401 ~~~~ 404 (404)
T d1uyra2 401 EVIK 404 (404)
T ss_dssp TCCC
T ss_pred HHHC
T ss_conf 9849
|
| >d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450-CAM species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=30481.66 Aligned_cols=1 Identities=0% Similarity=-2.021 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 l~p~p~~~p~~~~~d~d~~~p~~~~~dp~~~~~~lr~~~~~~~~~~~~~~g~w~vtr~~dv~~vl~d~~~Fss~~~~~~~ 80 (404)
T d1re9a_ 1 LAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRHFSSECPFIPR 80 (404)
T ss_dssp CCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHGGGGSTTSCSEEEECGGGCEEEECSHHHHHHHHHCTTTEETTSCSSSH
T ss_pred CCCCCCCCCHHHCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 98877999832266789898577632818999999960899779856999989976999999997699757689987764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~D~p~H~~~R~~l~~~Fs~~~l~~~~~~i~~~~~~ll~~~~~~g~~D~v~~~a~~l~~~vi~~llG~p 160 (404)
T d1re9a_ 81 EAGEAYDFIPTSMDPPEQRQFRALANQVVGMPVVDKLENRIQELACSLIESLRPQGQCNFTEDYAEPFPIRIFMLLAGLP 160 (404)
T ss_dssp HHHHHCCCTTTTCCTTHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGGGSEEEHHHHTTTHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHC
T ss_conf 44333456654578889999997526757843189998999999999974421467346420344577888799987420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~li~~~r~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~l~~ag~ 240 (404)
T d1re9a_ 161 EEDIPHLKYLTDQMTRPDGSMTFAEAKEALYDYLIPIIEQRRQKPGTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGL 240 (404)
T ss_dssp GGGHHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHTCEETTEECCHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 02102321335655431226899999999999999998887506654402333100233345758899999999998763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 eTt~~~l~~~~~~L~~~p~~~~~l~~~~~~~~~~v~E~lR~~~p~~~~r~~~~~~~~~G~~ip~G~~V~~~~~aanrDp~ 320 (404)
T d1re9a_ 241 DTVVNFLSFSMEFLAKSPEHRQELIERPERIPAACEELLRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDER 320 (404)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHCGGGHHHHHHHHHHHTCCBCCEEEESSCEEETTEEECTTCEEECCHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 34678899999997550588999876410111123342234553333433223200388667640233243675367854
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~f~dPd~F~p~R~~~~hl~FG~G~h~C~G~~lA~~e~~~~l~~ll~r~p~~~l~~~~~~~~~~~~~~g~~~lpv~~~P~~ 400 (404)
T d1re9a_ 321 ENACPMHVDFSRQKVSHTTFGHGSHLCLGQHLARREIIVTLKEWLTRIPDFSIAPGAQIQHKSGIVSGVQALPLVWDPAT 400 (404)
T ss_dssp TSSSTTSCCTTCSSCCCCTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCCCCEECTTCCCCEECSSBCEESCCEEECCGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEECCCCCCCCCEEEEEEEEECC
T ss_conf 47993331889999998877998616801999999999999999997898589999964315887258543468992068
Q ss_pred ---C
Q ss_conf ---5
Q 000920 1082 ---K 1082 (1223)
Q Consensus 1082 ---~ 1082 (1223)
.
T Consensus 401 ~~~~ 404 (404)
T d1re9a_ 401 TKAV 404 (404)
T ss_dssp CCCC
T ss_pred CCCC
T ss_conf 6869
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=100.00 E-value=0 Score=30481.56 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~d~~d~l~~~R~~F~~~~~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA 80 (404)
T d1qz9a_ 1 TTRNDCLALDAQDSLAPLRQQFALPEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLA 80 (404)
T ss_dssp CCHHHHHHHHHTCTTGGGGGGBCCCTTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHH
T ss_pred CCHHHHHHHCCCCCHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 96699997567781899985189999989867851033789999999999998750467565552328999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (404)
T d1qz9a_ 81 TLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQA 160 (404)
T ss_dssp TTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHH
T ss_pred HHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHEEEEECEECCCCCCCHHHHHH
T ss_conf 99689987579956706777777655555420357885799962543347788775422132100010354542668986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 i~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~ 240 (404)
T d1qz9a_ 161 IDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWV 240 (404)
T ss_dssp CSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEE
T ss_pred CCCCCEEEEEECCCCCCCCEECHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECHHHCCCCCCEEEEEEE
T ss_conf 69884599984245555616238997310324443326885123321233444454509998050214668856999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 320 (404)
T d1qz9a_ 241 SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELV 320 (404)
T ss_dssp CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 36556307863223577555522234544335604554320010467888777888877668999999987678999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~~~~v~~~L~~~gi~~~~r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 321 EQRCAAHELTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp HHHHTTSCCEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCEEEECCCCCCCEEEEEEEECCCHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 75435898799788883120139999169999999999888989862599869997997789999999999999999971
Q ss_pred ---C
Q ss_conf ---5
Q 000920 1082 ---K 1082 (1223)
Q Consensus 1082 ---~ 1082 (1223)
.
T Consensus 401 ~~~~ 404 (404)
T d1qz9a_ 401 KTWA 404 (404)
T ss_dssp TTTC
T ss_pred CCCC
T ss_conf 7889
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=0 Score=30481.06 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~y~p~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~ 80 (404)
T d1z7da1 1 KTPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFS 80 (404)
T ss_dssp CCHHHHHHHHHHHBCCCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEE
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEECCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 98799997787617888999885699946388997998999983306887846259699999999999857886665102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~ 160 (404)
T d1z7da1 81 VPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF 160 (404)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 79999997444314433024410243037789999998875213443222442222245788744333456554455677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~ 240 (404)
T d1z7da1 161 GPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLC 240 (404)
T ss_dssp -----CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSG
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf 88876300236656899999706997799999778388897409999999999999881978999767547774434345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~ 320 (404)
T d1z7da1 241 VHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFL 320 (404)
T ss_dssp GGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHHH
T ss_conf 00059887778872311289887554456399871478998576889895013555544344300003443001015789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~~ir~~Ppl~it~~~id~~~~~l~~al 400 (404)
T d1z7da1 321 ENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTV 400 (404)
T ss_dssp HHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999975699727887527199999748865599999999969938943899989997986789999999999999999
Q ss_pred ---C
Q ss_conf ---5
Q 000920 1082 ---K 1082 (1223)
Q Consensus 1082 ---~ 1082 (1223)
-
T Consensus 401 k~~~ 404 (404)
T d1z7da1 401 KFFD 404 (404)
T ss_dssp HHHC
T ss_pred HHHC
T ss_conf 9629
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30480.75 Aligned_cols=1 Identities=100% Similarity=1.101 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~~ 80 (404)
T d2byla1 1 GPPTSDDIFEREYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAF 80 (404)
T ss_dssp CCCCHHHHHHHHHHHBCSCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTE
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEECCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98967999999877546788987844898454999979879999926889988553798999999999996478755643
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~ 160 (404)
T d2byla1 81 YNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYD 160 (404)
T ss_dssp EESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHT
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf 31049999876543011332220147666403589999987640366312311223357884556510340577865455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~ 240 (404)
T d2byla1 161 GFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 240 (404)
T ss_dssp TSCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred CCCCCCCCEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCC
T ss_conf 77888887157346679999985579986999978843888971499999999999998628079960465364635533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~ 320 (404)
T d2byla1 241 LAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGII 320 (404)
T ss_dssp SGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CHHHHCCCCCCEEEECCHHHCCCCCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 33654699988999774646898662104521023312578887859886999999999999999854703566676688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 l~~~l~~l~~~~i~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~~~i~l~PpL~it~~~id~~~~~l~~a 400 (404)
T d2byla1 321 LRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKT 400 (404)
T ss_dssp HHHHHHTSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECEEEETTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHHCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99999960136631356246289999826886129999999996991992489998999799678999999999999999
Q ss_pred ---C
Q ss_conf ---5
Q 000920 1082 ---K 1082 (1223)
Q Consensus 1082 ---~ 1082 (1223)
.
T Consensus 401 l~~f 404 (404)
T d2byla1 401 ILSF 404 (404)
T ss_dssp HHTC
T ss_pred HHCC
T ss_conf 9729
|
| >d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycoside hydrolase/deacetylase family: AmyC N-terminal domain-like domain: Alpha-amylase AmyC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=30479.61 Aligned_cols=1 Identities=0% Similarity=-1.291 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~k~~l~lvlH~HqP~~~~~~~~~~~ee~W~~~~~~~~Y~pll~~l~~~~~~r~t~n~sP~LleQL~D~~~~~~f~~~~~~ 80 (404)
T d2b5dx2 1 MRGKILIFLHAHLPYVHHPEYDHFLEERWLFEAITETYIPLLMMFDEIEDFRLTMSITPPLMEMLSSRDLQEKYERHMEK 80 (404)
T ss_dssp CCEEEEEEEEECCCCCCCTTCSSCTTHHHHHHHHHHTHHHHHHHHHHSSCCCEEEEECHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 93489999945888644899886443669999999988999999985868619998779999987586756446999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~r~L~~~G~vEll~~~y~Hpilpll~~~~e~~~ 160 (404)
T d2b5dx2 81 LIELANKEVERTKKEHPLKHKMAKFYREHFEKILNVFRSYDGNILEGFKKYQETGKLEIVTCNATHAFLPLYQMYPEVVN 160 (404)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHHHTSEEEEEECTTCBCGGGGTTCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCHHHHH
T ss_conf 99986666552234204788999999999999999999966478999999997698048723520123455049869999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~Qi~~g~~~~~~~fG~~P~G~W~pE~a~~~~l~~~l~~~Gi~~~~~d~~~l~~~~~~~~~~~~~p~~~~~~~~~~~rd~~ 240 (404)
T d2b5dx2 161 AQITVGVKNYEKHMKKHPRGIWLAECGYYQGLDLYLAQNNVEYFFVDSHAFWFADEQPRYGVYRPIMTPSGVFAFARDPE 240 (404)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEECGGGCBCTTHHHHHHHTTCCEEEECTHHHHTSSSCCTTGGGSCEECTTSCEEEECCGG
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 99999999999986999988978753558769999997798699968335523577887666576215886157742510
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~vws~~~G~pg~~~~~~~~~~~~~~~~~~~i~~~frd~~ls~~igf~y~~~~~~~~~~~~k~~Yd~~~A~~~a~~~a 320 (404)
T d2b5dx2 241 SSEQVWSAAVGYPGDPRYREFYRDIGFDREMEYIKDYIDPSGVRINTGIKYHRITSKSLDASQKEYYDIDLAMEAVEEHA 320 (404)
T ss_dssp GCGGGGCTTTSGGGCTTSBCTTCCHHHHSCHHHHGGGSCTTSCCCCCSCCCBBCCSSCSCGGGCCBCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 01235414568878842121024533467776135764477632011402303566446643234479899999999989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~f~~~~~~~~~~~~~~~~~~~vv~i~~DgE~fGh~w~eG~~fL~~l~~~l~~~~~i~~~T~se~l~~~~~~~~~~l~~g 400 (404)
T d2b5dx2 321 RDFLHKKESQARRLMDIMGVEPVIVAPFDAELFGHWWFEGVFFLKRFFELVNESKDLKLVTASEVIDTLEEVQIATPADS 400 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCEEEEEEEGGGBTTTBTTHHHHHHHHHHHHHHCSSEEECCHHHHHHHCCCCCBCCCCSB
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHCCCCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCCCCCC
T ss_conf 99999999999876523689987999755132066713379999999999863898389769999986899772230799
Q ss_pred ---C
Q ss_conf ---5
Q 000920 1082 ---K 1082 (1223)
Q Consensus 1082 ---~ 1082 (1223)
.
T Consensus 401 SWg~ 404 (404)
T d2b5dx2 401 SWGA 404 (404)
T ss_dssp CSCC
T ss_pred CCCC
T ss_conf 9998
|
| >d1h12a_ a.102.1.2 (A:) Endo-1,4-beta-xylanase {Pseudoalteromonas haloplanktis [TaxId: 228]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Endo-1,4-beta-xylanase species: Pseudoalteromonas haloplanktis [TaxId: 228]
Probab=100.00 E-value=0 Score=30476.81 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
+
T Consensus 1 ~~~~~~~~~~a~~~~~y~n~~~~~~~~~i~~k~~~~~~~~f~~~~~~~~y~~~~~~~~~~~~~~~~i~d~~~~dv~SEGq 80 (404)
T d1h12a_ 1 AFNNNPSSVGAYSSGTYRNLAQEMGKTNIQQKVNSTFDNMFGYNNTQQLYYPYTENGVYKAHYIKAINPDEGDDIRTEGQ 80 (404)
T ss_dssp CCCSSCCSSCHHHHCCCCCHHHHTTCCSHHHHHHHHHHHHSSSCSSSCCEEEEEETTEEEEEEEEECCTTTCCEEEHHHH
T ss_pred CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 98888787761333755478898619999999999999971789884489971687665200012255479986654378
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 gYGMl~Av~~ndr~~FD~Lw~Wt~~~l~~~d~~~~~~~~gL~aW~~~~~~~~~~~v~d~nsAtDGDl~iA~ALl~A~~~W 160 (404)
T d1h12a_ 81 SWGMTAAVMLNKQEEFDNLWRFAKAYQKNPDNHPDAKKQGVYAWKLKLNQNGFVYKVDEGPAPDGEEYFAFALLNASARW 160 (404)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTBCCTTCSSGGGTTCBEEEEEECTTSCEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999999809999999999999998604555444455677613345888987556889999768999999999999861
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 g~~~~~~Y~~eA~~il~~i~~~~~~~~~~~l~P~~~~f~nPSY~~P~~~~~fa~~~~~~~~~~~W~~v~~~s~~ll~~~~ 240 (404)
T d1h12a_ 161 GNSGEFNYYNDAITMLNTIKNKLMENQIIRFSPYIDNLTDPSYHIPAFYDYFANNVTNQADKNYWRQVATKSRTLLKNHF 240 (404)
T ss_dssp CSSSSCCHHHHHHHHHHHHHHHSEETTEECSCTTCSSCBCGGGCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 89407799999999999888740578852556875578686325489999999860577540889999999999999850
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~s~~p~~gL~~d~~~~dg~~~~~~~~~~~~~~~~~~~yDA~Rvpl~~a~dy~w~~~d~~~~~~~~~~~~f~~~~~~~~ 320 (404)
T d1h12a_ 241 TKVSGSPHWNLPTFLSRLDGSPVIGYIFNGQANPGQWYEFDAWRVIMNVGLDAHLMGAQAWHKSAVNKALGFLSYAKTNN 320 (404)
T ss_dssp HHHSSTTTTTCCCSCBCTTSCBCCSCCSTTCCSCTTEECTTTHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 13467887789957872489736676667676778865502888778998887505888455799999999999875026
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~~~~~G~~~~~~~~~g~~a~~a~a~~a~~~~~~a~~~~~~~~~~~~~~~~~~YY~~~L~L~~ll~lsG~~r~~ 400 (404)
T d1h12a_ 321 SKNCYEQVYSYGGAQNRGCAGEGQKAANAVALLASTNAGQANEFFNEFWSLSQPTGDYRYYNGSLYMLAMLHVSGNFKFY 400 (404)
T ss_dssp TTSSCBSCEETTEECSSCBCCHHHHHHHHHHGGGCCCHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHHHHTTTCCCCC
T ss_pred CCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 88877631316896478888889999999999864793789999999970357888888789999999999963984772
Q ss_pred ---C
Q ss_conf ---5
Q 000920 1082 ---K 1082 (1223)
Q Consensus 1082 ---~ 1082 (1223)
.
T Consensus 401 ~~~~ 404 (404)
T d1h12a_ 401 NNTF 404 (404)
T ss_dssp CCC-
T ss_pred CCCC
T ss_conf 4579
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=0 Score=30403.99 Aligned_cols=1 Identities=0% Similarity=-2.055 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~s~ire~~~~~~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~ai 80 (403)
T d1wsta1 1 INFDSFFSEKAMLMKASEVRELLKLVETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLAL 80 (403)
T ss_dssp CCGGGGCCHHHHHCCCHHHHHHHHHHTSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98789999998508981899999972899958899978895206989999999999974760014889986779999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 a~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~ 160 (403)
T d1wsta1 81 ARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEK 160 (403)
T ss_dssp HHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 99999984899876773642221178899999986268755567886303567776404540267523667743112122
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S 240 (403)
T d1wsta1 161 LEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGT 240 (403)
T ss_dssp HHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEE
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCHHHEECCCCCCCCCCCCCCCCCEEEECC
T ss_conf 00011101343212322466898786399999999998887449265345021212347887874345677770799845
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~SK~~~~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 320 (403)
T d1wsta1 241 FSKILAPGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPE 320 (403)
T ss_dssp STTTTCGGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred CCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 55133685663444456578899999876402345530145677654114430467889999888999999999864668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~p~gg~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~~~ 400 (403)
T d1wsta1 321 GVEWTKPEGGMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEM 400 (403)
T ss_dssp TCEECCCSBSSEEEEECCTTCCTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCEEEEEEECCCCCCHHHHHHHHHHCCEEEEECHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 73780788146999989999999999999997897999336636899989979999567999999999999999999998
Q ss_pred --C
Q ss_conf --5
Q 000920 1082 --K 1082 (1223)
Q Consensus 1082 --~ 1082 (1223)
.
T Consensus 401 k~~ 403 (403)
T d1wsta1 401 KRV 403 (403)
T ss_dssp HHC
T ss_pred HCC
T ss_conf 449
|
| >d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: p450 monoxygenase OxyC species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=30402.82 Aligned_cols=1 Identities=0% Similarity=-1.122 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~p~~~~~~~~~dP~~~~~~lR~~gPv~ri~~~~~~~~g~~~~w~vt~~~~vr~vl~d~~~fss~~~~~~~ 80 (403)
T d1ueda_ 1 DIDQVAPLLREPANFQLRTNCDPHEDNFGLRAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHEHFTTRPQFTQS 80 (403)
T ss_dssp CCCSCCCEEECCTTTTCEETTEECHHHHHHHTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCSSEECCCCC---
T ss_pred CHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 93234767688344023117997699999995399798516776435888489979999999997598646488665644
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~l~~~Dg~~h~~~Rr~l~~~Fs~~~l~~~~~~i~~~~~~ll~~l~~~g~~~Dl~~~~~~~~~~~~~~~ 160 (403)
T d1ueda_ 81 KSGAHVEAQFVGQISTYDPPEHTRLRKMLTPEFTVRRIRRMEPAIQSLIDDRLDLLEAEGPSADLQGLFADPVGAHALCE 160 (403)
T ss_dssp ------CGGGTTCGGGCCTTHHHHHHHHHGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEHHHHTHHHHHHHHHHH
T ss_pred CCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 55442202216764157815799999998686597999876179999999999874124875203566654456666677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rr~~~~~~~~~~~~~~~~~~ls~~~l~~~~~~~l 240 (403)
T d1ueda_ 161 LLGIPRDDQREFVRRIRRNADLSRGLKARAADSAAFNRYLDNLLARQRADPDDGLLGMIVRDHGDNVTDEELKGLCTALI 240 (403)
T ss_dssp HHTCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 73260333456655554302301567888877777899999999999862133115555422366466888877788887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~aG~dTt~~~l~~~l~~L~~~p~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~R~~~~d~~~~G~~ip~G~~V~~~~~~ 320 (403)
T d1ueda_ 241 LGGVETVAGMIGFGVLALLDNPGQIELLFESPEKAERVVNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILM 320 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSGGGTTHHHHCHHHHHHHHHHHHHHHCSSCSCSCEEESSCEEETTEEECTTCEEEECHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEECCHHC
T ss_conf 40104678999999999862320101122202442212333202223344322010134645589743333210001000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~rdp~~f~dP~~F~PeR~~~~~lpFG~G~r~CiG~~lA~~el~~~l~~Ll~~f~~~~l~~~~~~~~~~~~~~~~~~~lp 400 (403)
T d1ueda_ 321 ANRDEALTPDPDVLDANRAAVSDVGFGHGIHYCVGAALARSMLRMAYQTLWRRFPGLRLAVPIEEVKYRSAFVDCPDQVP 400 (403)
T ss_dssp HTTCTTTSSSTTSCCTTSCCCCCCTTCCSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCCSSSCCBSCCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCEECCEEEE
T ss_conf 25783227994243889999999979998846918999999999999999996797788988776544477510764656
Q ss_pred --C
Q ss_conf --5
Q 000920 1082 --K 1082 (1223)
Q Consensus 1082 --~ 1082 (1223)
-
T Consensus 401 v~f 403 (403)
T d1ueda_ 401 VTW 403 (403)
T ss_dssp EEC
T ss_pred EEC
T ss_conf 569
|
| >d1xksa_ b.69.14.1 (A:) Nuclear pore complex protein Nup133 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nuclear pore complex protein Nup133 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30401.46 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~ve~~g~~LPv~V~EaLt~a~~~~~~s~~~s~~G~awvv~g~~l~VW~y~~s~~~~~~~C~~L~LP~sdl~~~a~ 80 (403)
T d1xksa_ 1 ESVNYDVKTFGSSLPVKVMEALTLAEVDDQLTINIDEGGWACLVCKEKLIIWKIALSPITKLSVCKELQLPPSDFHWSAD 80 (403)
T ss_dssp CCSSEEEEECSSCCCHHHHHHHHHCCTTSCEEEEECTTSEEEEEETTEEEEEECCSSCCGGGCCEEEEECCCCSSCCCGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 97542676778987688998862057887447999899679999799999971578887787521797189645455676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 Lv~v~~~~~~~~~~~~~~~gvi~vs~tG~VryW~sI~~~~s~~e~~i~l~~~E~~~~l~~~e~~g~ilatstg~l~l~~~ 160 (403)
T d1xksa_ 81 LVALSYSSPSGEAHSTQAVAVMVATREGSIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLIP 160 (403)
T ss_dssp GEEEEECC-------CTTEEEEEECTTCEEEEESCTTCTTCCEEEECC----CCEEEEEEETTTEEEEEETTCCEEEEEE
T ss_pred EEEECCCCCCCCCCCCCCCEEEEECCCCEEEECHHCCCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEECCEEEEEEEC
T ss_conf 56761367767667887657999979921898710255766423431368966899888507842999947514999923
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~l~~~~L~~~~g~l~Gi~~~~sSl~~~~~~~~~~~~~s~~~~~~~~~v~~ls~~~lq~W~l~~~~e~~~~~~di~~ 240 (403)
T d1xksa_ 161 ESSGKIHQHILPQGQGMLSGIGRKVSSLFGILSPSSDLTLSSVLWDRERSSFYSLTSSNISKWELDDSSEKHAYSWDINR 240 (403)
T ss_dssp CTTSCEEEEECTTCCCC------------------CCCCEEEEEEETTTTEEEEEESSEEEEEEECSSCEEEEEEEEHHH
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEHHHHH
T ss_conf 78982899993588754555334542002124775434211133455314999977995478980389861567513789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~i~e~~~~~i~~~~~~~~~~~~~i~~~~LD~~~~~~g~~iL~~~~~~~~~~~~~yy~L~ti~~~~~~~~~~~~~~l~~~~ 320 (403)
T d1xksa_ 241 ALKENITDAIWGSESNYEAIKEGVNIRYLDLKQNCDGLVILAAAWHSADNPCLIYYSLITIEDNGCQMSDAVTVEVTQYN 320 (403)
T ss_dssp HHHHHHHHHHHTTSTTHHHHHTTCEEEEEEEEEETTEEEEEEEEECTTSSSCBEEEEEEEECCBTTBCCSCEEEEECSCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEEEEEEEEEC
T ss_conf 99999998752023556565444305998875848976999999732668870799999998278713788999867767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~~~~rl~vp~p~~~~ayv~~~~~V~~~~~~~~~~~~~~d~I~F~~~~d~il~~~~~~~~pl~fs~~~Glv~it 400 (403)
T d1xksa_ 321 PPFQSEDLILCQLTVPNFSNQTAYLYNESAVYVCSTGTGKFSLPQEKIVFNAQGDSVLGAGACGGVPIIFSRNSGLVSIT 400 (403)
T ss_dssp CBCCCGGGCCCEEECCCSSSSEEEEECSSEEEEEECTTCTTCCCCEEEECCGGGCCEEEEEEETTEEEEEETTTEEEEEE
T ss_pred CCCCCCCCCCCEEEECCCCCCEEEEEECCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEEEECCEEEEEEECCEEEEEE
T ss_conf 85674434760599658998389999099899995789989984417888454677885121578769999234189995
Q ss_pred --C
Q ss_conf --5
Q 000920 1082 --K 1082 (1223)
Q Consensus 1082 --~ 1082 (1223)
-
T Consensus 401 ~~~ 403 (403)
T d1xksa_ 401 SRE 403 (403)
T ss_dssp ECC
T ss_pred CCC
T ss_conf 799
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=30399.90 Aligned_cols=1 Identities=0% Similarity=-0.625 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~p~~~~g~~~i~~~f~w~~~~i~~e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~dY~v~~~~Gt~~dfk 80 (403)
T d1hx0a2 1 EYAPQTQSGRTSIVHLFEWRWVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFR 80 (403)
T ss_dssp CCSCCCCTTCCEEEEETTCCHHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHH
T ss_pred CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHH
T ss_conf 98998889972589700076899999999999981998799496815766788999876003687771489999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~Lv~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (403)
T d1hx0a2 81 DMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDC 160 (403)
T ss_dssp HHHHHHHHTTCEEEEEECCSEEEETTCCCBSCBSSCCCBBGGGTBBTTTTBCGGGBCTTTCCSTTSBCCCTTCHHHHHHS
T ss_pred HHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 99999986699799997124466655321345666764543334577788887667887656788874655771002331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~l~~~pDLn~~np~Vr~~~~~~l~~~~~~GvdGfR~Da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~ 240 (403)
T d1hx0a2 161 QLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRIDASKHMWPGDIKAVLDKLHNLNTNWFPAGSRPFIFQEVIDLGGE 240 (403)
T ss_dssp BGGGEEEBCTTSHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCHHHHHHHHTTCCCCCTTTSCTTCCCEEEECCCCCSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCC
T ss_conf 23445864679999999999999999873977653232321678899999999875073200156775278877516830
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Fl~NHD~~R~~~~~~~~~~~~~~~~~ 320 (403)
T d1hx0a2 241 AIKSSEYFGNGRVTEFKYGAKLGTVVRKWSGEKMSYLKNWGEGWGFMPSDRALVFVDNHDNQRGHGAGGSSILTFWDARL 320 (403)
T ss_dssp SSCGGGGTTTSEEECHHHHHHHHHHHTTCTTCCGGGGGGTTGGGTCCCGGGEEECSCCTTGGGTCSSCGGGCCCGGGHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 21022025887102243223245787641620478998750111368845057863467775556678864144456789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~a~af~lt~p~G~P~iy~gy~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~r~~~i~~m~~frn~ 400 (403)
T d1hx0a2 321 YKIAVGFMLAHPYGFTRVMSSYRWARNFVNGEDVNDWIGPPNNNGVIKEVTINADTTCGNDWVCEHRWREIRNMVWFRNV 400 (403)
T ss_dssp HHHHHHHHHHSCSSEEEEEECBCCCCCEETTEETTTTCCSSEETTEECCCCBCTTSCBCTTBCCGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999987898164676306644544577667778999888874688747767778518777668999999998663
Q ss_pred --C
Q ss_conf --5
Q 000920 1082 --K 1082 (1223)
Q Consensus 1082 --~ 1082 (1223)
-
T Consensus 401 ~~g 403 (403)
T d1hx0a2 401 VDG 403 (403)
T ss_dssp TTT
T ss_pred CCC
T ss_conf 679
|
| >d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp154c1 monooxygenase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=0 Score=30401.15 Aligned_cols=1 Identities=0% Similarity=0.371 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~lR~~GPv~~~~~~g~~~~~vvt~~~~v~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (403)
T d1gwia_ 1 ARIPLDPFVTDLDGESARLRAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPRLVKDINVWGAWRRGEIPADWPLIGLAN 80 (403)
T ss_dssp CCEECCTTCSCHHHHHHHHHHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTTEECCGGGCHHHHTTCSCTTCTTHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98888987669559999998149978988479960999679999999966976133765333222466765443200003
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~g~~ll~~dG~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~d~~~~~a~~~~~~~~~~~~g~~~~~~ 160 (403)
T d1gwia_ 81 PGRSMLTVDGAEHRRLRTLVAQALTVRRVEHMRGRITELTDRLLDELPADGGVVDLKAAFAYPLPMYVVADLMGIEEARL 160 (403)
T ss_dssp CCSSGGGCCHHHHHHHHHHHTTTSCHHHHHTTHHHHHHHHHHHHHTSCCSCCCEEHHHHTTTHHHHHHHHHHHTCCGGGH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 68862158857899999997640443313222447989899875321035844431034433333233221047641000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ag~~tt 240 (403)
T d1gwia_ 161 PRLKVLFEKFFSTQTPPEEVVATLTELASIMTDTVAAKRAAPGDDLTSALIQASENGDHLTDAEIVSTLQLMVAAGHETT 240 (403)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHCCBTTBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCH
T ss_conf 00022233222222048999999999987689999987427642222111112123320123358999999987064210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~l~~~~~~l~~~p~~~~~l~~~~~~l~~~i~E~lRl~pp~~~~~~r~~~~d~~~~g~~ip~G~~V~~~~~~~~rd~~~ 320 (403)
T d1gwia_ 241 ISLIVNAVVNLSTHPEQRALVLSGEAEWSAVVEETLRFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERA 320 (403)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHTTSSCHHHHHHHHHHHSCSBCCEEEEEESSCEEETTEEECTTCEEEECHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHCCCCCCCCCCCCCCCEEECCEEECCCCEEEEECCCCCCCHHH
T ss_conf 11445555433421589999997620100001220221275200024344687670435654632353100245677654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~pdP~~F~PeR~~~~~~lpFG~G~r~C~G~~lA~~e~~~~l~~ll~~f~~~~l~~p~~~~~~~~~~~~~~~~~lpv~~~ 400 (403)
T d1gwia_ 321 HGPTADRFDLTRTSGNRHISFGHGPHVCPGAALSRMEAGVALPALYARFPHLDLAVPAAELRNKPVVTQNDLFELPVRLA 400 (403)
T ss_dssp HCGGGGSCCTTCCCSSCCCTTCCSTTCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCSCTTBCCBSCCEEESS
T ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCCCEEEEEE
T ss_conf 09955434878899998376688872680199999999999999999679788888834464688655579876479995
Q ss_pred --C
Q ss_conf --5
Q 000920 1082 --K 1082 (1223)
Q Consensus 1082 --~ 1082 (1223)
.
T Consensus 401 ~~~ 403 (403)
T d1gwia_ 401 HHH 403 (403)
T ss_dssp CC-
T ss_pred CCC
T ss_conf 079
|
| >d3b55a1 c.150.1.3 (A:40-442) Succinoglycan biosynthesis protein BC3120 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: EreA/ChaN-like superfamily: EreA/ChaN-like family: EreA-like domain: Succinoglycan biosynthesis protein BC3120 species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=30404.42 Aligned_cols=1 Identities=0% Similarity=0.338 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~wi~~~a~pL~~~~p~~~~~Dl~~L~~~v~dariV~LGEatHGt~Ef~~~r~~l~r~Lvee~Gf~~va~E~d~~~~ 80 (403)
T d3b55a1 1 NQIAKWLEAHAKPLKTTNPTASLNDLKPLKNMVGSASIVGLGEATHGAHEVFTMKHRIVKYLVSEKGFTNLVLEEGWDRA 80 (403)
T ss_dssp HHHHHHHHHHCEEECCCCTTSCSGGGTTHHHHHTTCSEEEEEESCTTBHHHHHHHHHHHHHHHHHSCCCEEEEEEEHHHH
T ss_pred CHHHHHHHHHCEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 95899999846718888999984779999987479739997267656079999999999999997699889994795889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~vn~yV~~g~g~~~~~~~~~w~~~e~~~li~WmR~yN~~~~~~~~v~f~G~D~~~~~~s~~~~v~~yl~~~~p~~~~~~ 160 (403)
T d3b55a1 81 LELDRYVLTGKGNPSQHLTPVFKTKEMLDLLDWIRQYNANPKHKSKVRVIGMDIQSVNENVYNNIIEYIKANNSKLLPRV 160 (403)
T ss_dssp HHHHHHHHHSCSCGGGTSCGGGCBHHHHHHHHHHHHHHHCTTCSCCCEEEEEECSCCCHHHHHHHHHHHHHHHGGGTHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 99988875488887787676435288999999999984458877842799854565205578999999986198889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 240 (403)
T d3b55a1 161 EEKIKGLIPVTKDMNTFESLTKEEKEKYVLDAKTISALLEENKSYLNGKSKEFAWIKQNARIIEQFTTMLATPPDKPADF 240 (403)
T ss_dssp HHHHHHHGGGSSSHHHHHTSCHHHHHHHHHHHHHHHHHHHHTGGGGTTTSHHHHHHHHHHHHHHHHHHHTTCCTTCTTHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99874123333465667764155578899999999999998476541274679999999999999999998456774667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~RD~~Maenl~wl~~~~~kiivwaHN~Hi~~~~~~~~~~~~~~G~~L~e~~G~~y~~IG~~~~~G~v~a~~~~~~~~~ 320 (403)
T d3b55a1 241 YLKHDIAMYENAKWTEEHLGKTIVWGHNGHVSKTNMLSFIYPKVAGQHLAEYYGKRYVSIGTSVYEGQYNVKNSDGEFGP 320 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSEEEEEEHHHHSSSCSCTTTCSSCHHHHHHHHHGGGEEEEEEEEEEEEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCEEECCCCCCCCCC
T ss_conf 77899999999999870689889995705425677554557554889999884874499999734640512567788663
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~v~~~~~~S~E~~l~~~~~~~~~ldlr~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~fDali~i~~~tP~ 400 (403)
T d3b55a1 321 YGTLKSDDPNSYNYIFGQVKKDQFFIDLRKANGVTKTWLNEQHPIFAGITTEGPDIPKTVDISLGKAFDILVQIQKVSPS 400 (403)
T ss_dssp EEECCCCCTTSHHHHHHTSSCSEEEEEGGGCCHHHHHHHTSCEEEECCCSBCBTTBCSEEEECHHHHCSEEEEEEEECBC
T ss_pred EEECCCCCCCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHCCEEEEECCCCCC
T ss_conf 02227999988999997369986898764365331557630424045357898666754058859969589996565745
Q ss_pred --C
Q ss_conf --5
Q 000920 1082 --K 1082 (1223)
Q Consensus 1082 --~ 1082 (1223)
-
T Consensus 401 ~~~ 403 (403)
T d3b55a1 401 QVH 403 (403)
T ss_dssp CBC
T ss_pred CCC
T ss_conf 369
|
| >d2g5da1 b.52.1.4 (A:40-441) Membrane-bound lytic murein transglycosylase A, MLTA {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double psi beta-barrel superfamily: Barwin-like endoglucanases family: MLTA-like domain: Membrane-bound lytic murein transglycosylase A, MLTA species: Neisseria gonorrhoeae [TaxId: 485]
Probab=100.00 E-value=0 Score=30331.36 Aligned_cols=1 Identities=0% Similarity=-0.726 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 p~~p~~~p~pa~~~~~~~~a~~~~vsf~~LpGW~~dd~~~al~af~~sC~~l~~~~~w~~~C~~a~~~~~~~~~aR~Ffe 80 (402)
T d2g5da1 1 PDRPAGIPDPAGTTVAGGGAVYTVVPHLSMPHWAAQDFAKSLQSFRLGCANLKNRQGWQDVCAQAFQTPIHSFQAKRFFE 80 (402)
T ss_dssp CCCCCCCCCCTTCEEEETTEEEEECCGGGSTTCTTCCHHHHHHHHHHHHHHHTTSTTCHHHHHHHHTSCSSHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 98887899997654567764234546888889740139999999999877503246789999999717998099999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~F~p~~v~~~g~~~Gl~TGYYEP~l~gS~~r~~~y~~PlY~~P~DLv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
T d2g5da1 81 RYFTPWQVAGNGSLAGTVTGYYEPVLKGDGRRTERARFPIYGIPDDFISVPLPAGLRGGKNLVRIRQTGKNSGTIDNAGG 160 (402)
T ss_dssp HHEEEEEEEETTBSCEEEEEEEECEEEEESSCCSSCCEEEEBSCTTCEEEECC--------CEEECCCBTTBCC------
T ss_pred HHCEEEEEECCCCCCEEEEEEECEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 72789998407987525877403057653366888887734589532225555433322222222334455443334444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~dl~~~~~~~~~~~~~gR~~~~~~vPY~~R~eI~~g~l~~~~~elaW~~Dpvd~FFLqIQGSGrl~l~dG~~~rvgY 240 (402)
T d2g5da1 161 THTADLSRFPITARTTAIKGRFEGSRFLPYHTRNQINGGALDGKAPILGYAEDPVELFFMHIQGSGRLKTPSGKYIRIGY 240 (402)
T ss_dssp -EEECTTTSCCCSCCSEEEEEEETTEEEECCCHHHHHTTTTTTSSCEEEEESCHHHHHHHHHHSCEEEECTTSCEEEEEE
T ss_pred CCCCCCCCCCCCCCCHHHEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCHHHHHHEEECCCEEEEECCCCEEEEEE
T ss_conf 33354112563222101100102785134776999864875677745788378255352665263699937999899986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ag~NG~pY~sIGr~Li~~G~i~~~~~Smq~Ir~Wl~~nP~~~~ell~~NpsYVFFr~~~~~~~~GP~Ga~gvpLtp~rSi 320 (402)
T d2g5da1 241 ADKNEHPYVSIGRYMADKGYLKLGQTSMQGIKAYMRQNPQRLAEVLGQNPSYIFFRELAGSGGDGPVGALGTPLMGEYAG 320 (402)
T ss_dssp EEECCCCCCCHHHHHHTTTSSCTTSCSHHHHHHHHHHCGGGHHHHHTTCCCCEEEEEC-----CCCBCTTSSBCCTTSEE
T ss_pred CCCCCCCCEEHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 36789965108999976698671128999999999979799999997499749988778888899864367756677046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 AvD~~~iPlG~pv~l~t~~p~~~~~~~rL~iAQDTGgAIkG~~R~D~f~G~G~~Ag~~AG~mk~~G~~~~LlPk~~~p~~ 400 (402)
T d2g5da1 321 AIDRHYITLGAPLFVATAHPVTRKALNRLIMAQDTGSAIKGAVRVDYFWGYGDEAGELAGKQKTTGYVWQLLPNGMKPEY 400 (402)
T ss_dssp EECTTTSCTTCEEEEEEECTTTCSEEEEEEEEEEECTTCCSSSEEEEEEEESHHHHHHHHHCEEEEEEEEEEETTCCCCC
T ss_pred EECCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf 61776257887389974577778850027998515765348861698751888999887452575259999528888677
Q ss_pred -C
Q ss_conf -5
Q 000920 1082 -K 1082 (1223)
Q Consensus 1082 -~ 1082 (1223)
.
T Consensus 401 ~~ 402 (402)
T d2g5da1 401 RP 402 (402)
T ss_dssp CC
T ss_pred CC
T ss_conf 97
|
| >d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: L-aspartase-like superfamily: L-aspartase-like family: L-aspartase/fumarase domain: Adenylosuccinate lyase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=100.00 E-value=0 Score=30330.16 Aligned_cols=1 Identities=0% Similarity=-1.390 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~sP~d~ry~~~~~~~ifs~~~~~~~~l~ve~a~a~a~~e~G~ip~~~a~~i~~~~~d~~~i~~~e~~~~hdv~a~~~~l 80 (402)
T d1dofa_ 1 HVSPFDWRYGSEEIRRLFTNEAIINAYLEVERALVCALEELGVAERGCCEKVNKASVSADEVYRLERETGHDILSLVLLL 80 (402)
T ss_dssp CCCGGGTTSSCHHHHTTSSHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHCCCCTTTC--------CHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 92987656498899987294999999999999999999874989889999998723388999999988589804799998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~vH~G~TsnDi~~ta~~l~~r~~~~~l~~~l~~l~~~L~~~a~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~ 160 (402)
T d1dofa_ 81 EQKSGCRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYY 160 (402)
T ss_dssp HHHHCCSCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 65347888502676487661598999986466788899999999999987640211003765256554229988888999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~l~r~~~rl~~~~~~~~~~~gGa~g~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~rd~~~e~~~~L~~~a~~L~kia 240 (402)
T d1dofa_ 161 ELYIACRQLALAEEFIRAKIGGAVGTMASWGELGLEVRRRVAERLGLPHHVITTQVAPRESFAVLASALALMAAVFERLA 240 (402)
T ss_dssp HHHHHHHHHHHHHHHCCBCCCCTTSSCGGGGGGHHHHHHHHHHHTTCCBCSSCSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999875034566552224430445789999887345555235555541001688999888898999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~Di~~~s~~e~ge~~e~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~ 320 (402)
T d1dofa_ 241 VEIRELSRPEIGEVVEGGGGSSAMPHKANPTASERIVSLARYVRALTHVAFENVALWHERDLTNSANERVWIPEALLALD 320 (402)
T ss_dssp HHHHHHTSTTTCSEESCC---------CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999717753541134675410258878428998724378887888999875124432120245655302532599999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~l~~~~~~l~~l~vn~erm~~~l~~s~~~i~ae~~~~~L~~~gl~~~~Ah~~v~~~~~~a~e~~k~~~e~l~~d~~~l~ 400 (402)
T d1dofa_ 321 EILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWPVERLIEDALSLK 400 (402)
T ss_dssp HHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCHHHHHHHHTTCCCCCCGGGGCCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCCEECHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHCC
T ss_conf 99999999876499989999999985158667999999999869999999999999999999958985999860825147
Q ss_pred -C
Q ss_conf -5
Q 000920 1082 -K 1082 (1223)
Q Consensus 1082 -~ 1082 (1223)
.
T Consensus 401 l~ 402 (402)
T d1dofa_ 401 LC 402 (402)
T ss_dssp CC
T ss_pred CC
T ss_conf 89
|
| >d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30329.19 Aligned_cols=1 Identities=0% Similarity=-1.290 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~gPL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~ 80 (402)
T d1xk7a1 1 LPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFL 80 (402)
T ss_dssp CCCCCCSTTTTCEEEEECCSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHHHHHHH
T ss_conf 98899969999888883780289999999998299599989999997434588516773899859998693978999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~Lv~~aDv~i~n~rpg~~~~lGl~~~~L~~~nP~lI~~sisgfG~~~~gp~~~~~~~D~~~qA~sG~~~~~G~~~~p~~~ 160 (402)
T d1xk7a1 81 KLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPA 160 (402)
T ss_dssp HHHTTCSEEEEECSSSHHHHTTCCHHHHHHHCTTCEEEEEESSCSSSCTTTTTSCCCHHHHHHHHTSGGGSEETTEECCC
T ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 98750587534101222113465421001002443213655565776765467777663212210000101455455433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~d~~~g~~aa~ailaAL~~r~~TG~Gq~VdvSm~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~y~~~D 240 (402)
T d1xk7a1 161 FPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCAD 240 (402)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHTHHHHHHHHTTSCCCCCBBTTBCSSBTTEEEEEETT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 44322123124431345777640345788665443432201344321111000123332222234677422458553146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 G~i~i~~~~~~~~~~l~~~~g~~~l~~dp~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~t~~e~~~~l~~~gvp~apV~ 320 (402)
T d1xk7a1 241 GYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLATHTIAEVKERFAELNIACAKVL 320 (402)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCGGGTTSSSSCTTCCCCBTTTSTTHHHHHHHHHHHHHTSCHHHHHHHHHHTTCEEEECC
T ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCC
T ss_conf 76211233222222201121001222322233322221000366778899999999865021145566550795010478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~e~~~dpq~~~r~~~~~~~~~~~g~~~~p~~p~~fs~t~~~~~~~aP~lGeht~eIL~eLG~s~~eI~~L~~~gvi~~ 400 (402)
T d1xk7a1 321 TVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKV 400 (402)
T ss_dssp CGGGSTTCHHHHHHTCEEEEECTTSCEEEEECCSSCCSSSCCCCCCCCCCTTTTHHHHHHHTTCCHHHHHHHHHTTSEEC
T ss_pred CHHHHHHCHHHHHHCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCEEC
T ss_conf 99998779898971999988768997667305770158999887899999985499999986999999999998829868
Q ss_pred -C
Q ss_conf -5
Q 000920 1082 -K 1082 (1223)
Q Consensus 1082 -~ 1082 (1223)
-
T Consensus 401 ~~ 402 (402)
T d1xk7a1 401 ED 402 (402)
T ss_dssp CC
T ss_pred CC
T ss_conf 89
|
| >d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: N-acylglucosamine (NAG) epimerase domain: N-acyl-D-glucosamine 2-epimerase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=30327.31 Aligned_cols=1 Identities=0% Similarity=-1.291 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~ilpfW~~~~~D~~~GGf~~~ld~dg~~~~~~k~~~~~~R~l~~fs~a~~~~~~~~~~~~ 80 (402)
T d1fp3a_ 1 MEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGRQVWMYCRLYRKLERFHRPEL 80 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBCTTTSSBCCCBCTTSCBSCCCEEHHHHHHHHHHHHHHHHHCGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 94168999999999999999999878855807678972143789998579886365549999999999997463489899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~a~~g~~~L~~~~~~d~~~Gg~~~~vd~dG~~~~~~k~~Yd~Af~l~a~a~~~~~tg~~~~~~~a~~~~~~i~~~~~~ 160 (402)
T d1fp3a_ 81 LDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVRE 160 (402)
T ss_dssp HHHHHHHHHHHHHHTBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999981883589998898878999967654564120899999899886039989999999999999998421
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~g~~~~~~~~~~~~~g~~~~m~l~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 240 (402)
T d1fp3a_ 161 DPSGLGRPQLPGAVASESMAVPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCL 240 (402)
T ss_dssp CGGGGCCCCCTTSCCEEETHHHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHTTEETTTTEECSEEETTSCBCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 56888741247875434354179999999997343430579999999999998875016541257764314667666834
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~i~pGh~~e~~wLll~a~~~~~~~~~~~~a~~~~~~~~~~~g~d~~~ggl~~~~~~~g~~~~~~~~~~k~~W~qaE~i 320 (402)
T d1fp3a_ 241 GRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAM 320 (402)
T ss_dssp HHEECHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTHHHHHHHBCTTTCSBCSCEETTSCCCSSTTTTCEEHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 47278502359999999999873990479999999999999829557899588875378886655441377787899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~a~l~ly~~tgd~~~l~~a~~l~~~~~~~f~D~~~G~W~~~~~~~g~~~~~~k~~p~~~~YH~~ral~~~~~~l~~~~~~ 400 (402)
T d1fp3a_ 321 IAFLMGYSESGDPALLRLFYQVAEYTFRQFRDPEYGEWFGYLNREGKVALTIKGGPFKGCFHVPRCLAMCEEMLSALLSR 400 (402)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTTTSSBCCEECTTSCEEECCSSCSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999987049989999999999999986877999766743899989986677888898461899999999999999851
Q ss_pred -C
Q ss_conf -5
Q 000920 1082 -K 1082 (1223)
Q Consensus 1082 -~ 1082 (1223)
.
T Consensus 401 ~~ 402 (402)
T d1fp3a_ 401 LA 402 (402)
T ss_dssp HC
T ss_pred CC
T ss_conf 39
|
| >d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450-ERYF species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=100.00 E-value=0 Score=30326.17 Aligned_cols=1 Identities=0% Similarity=-0.725 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~f~~dpy~~y~~lr~~gPv~~~~~~g~~~~vvt~~e~v~~vl~d~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 80 (402)
T d1z8oa1 1 TVPDLESDSFHVDWYRTYAELRETAPVTPVRFLGQDAWLVTGYDEAKAALSDLRLSSDPKKKYPGVEVEFPAYLGFPEDV 80 (402)
T ss_dssp CCCBTTSGGGTSSHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCTTEECCTTCCCTTCCCCCGGGTTCCHHH
T ss_pred CCCCCCCHHHHHCHHHHHHHHHHCCCEEEEEECCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 98787974566594999999983499789850895389988999999996497534483112565544564223442667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~l~~~dg~~H~~~R~~l~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 160 (402)
T d1z8oa1 81 RNYFATNMGTSDPPTHTRLRKLVSQEFTVRRVEAMRPRVEQITAELLDEVGDSGVVDIVDRFAHPLPIKVICELLGVDEK 160 (402)
T ss_dssp HHHHSSSGGGCCTTHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHHHHHTSCSSSEEEHHHHTTTHHHHHHHHHHTTCCGG
T ss_pred HHHHCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 77741562016577776420212210243205677888899999875203222223333212330344556666300377
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~d~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~aG 240 (402)
T d1z8oa1 161 YRGEFGRWSSEILVMDPERAEQRGQAAREVVNFILDLVERRRTEPGDDLLSALIRVQDDDDGRLSADELTSIALVLLLAG 240 (402)
T ss_dssp GTTTHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHCEETTTEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 88888888889875065112566788899999999988999728887779999985664288787789888888873064
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~dTt~~~l~~~l~~l~~~P~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~~~d 320 (402)
T d1z8oa1 241 FEASVSLIGIGTYLLLTHPDQLALVRRDPSALPNAVEEILRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRD 320 (402)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHCGGGHHHHHHHHHHHTCSSCCEEEEESSCEEETTEEECTTCEEEECHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 54315678888888765058999975013445430155654220244332134567555784134543022334452168
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 p~~f~dP~~F~PeR~~~~~lpFG~G~r~C~G~~lA~~el~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 400 (402)
T d1z8oa1 321 PKQFPDPHRFDVTRDTRGHLSFGQGIHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLRGIDHLPVRL 400 (402)
T ss_dssp TTTSSSTTSCCTTSCCTTCCTTCSSTTCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCCCCCSSSCCCSCCEEET
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCCCEEEEE
T ss_conf 53278911228899999988989986578139999999999999999967977578887876352787668988557996
Q ss_pred -C
Q ss_conf -5
Q 000920 1082 -K 1082 (1223)
Q Consensus 1082 -~ 1082 (1223)
-
T Consensus 401 ~~ 402 (402)
T d1z8oa1 401 DG 402 (402)
T ss_dssp TC
T ss_pred CC
T ss_conf 59
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=100.00 E-value=0 Score=30254.25 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~pi~~lv~~ll~~A~~~~ASDIHi~~~~~~~~V~~RidG~L~~~~~~~~~~~~~l~~~~ 80 (401)
T d1p9ra_ 1 DFFSLAEELPQNEDLLESEDDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRV 80 (401)
T ss_dssp CHHHHHHC-------------CHHHHHHHHHHHHHHHHTCSEEEEEEETTEEEEEEEETTEEEEEECCCGGGHHHHHHHH
T ss_pred CHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCEEEECCCCCCCHHHHHHHHH
T ss_conf 95464312787344654257767999999999999982980599981788846999989998887888855699999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~a~~~~~~~~~~q~g~~~~~~~~~~i~~Rv~~~p~~~g~~~vlRl~~~~~~~~~l~~LG~~~~~~~~l~~l~~~~~Gl 160 (401)
T d1p9ra_ 81 KVMAKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHGI 160 (401)
T ss_dssp HHHTTCCTTCCSSCEEEEEEC-----CEEEEEEEECCTTSCEEEECCEETTTTCCCGGGSCCCHHHHHHHHHHHTSSSEE
T ss_pred HHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCE
T ss_conf 98513678887530120022313894488754442202344566543112332001443013577789999998641054
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 iLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd~~ 240 (401)
T d1p9ra_ 161 ILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLE 240 (401)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHH
T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCHH
T ss_conf 89876787774477999866625787469996267434567887026558767799999999984138889845768759
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ta~~a~~aa~tGhlV~tTlHa~~a~~~~~Rl~~~~~~~~~l~~~l~~vv~QrLv~~lCp~Ck~~~~~~~~~~~~~~~~~~ 320 (401)
T d1p9ra_ 241 TAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQRKLFDSKKK 320 (401)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEEEEEEEEEECTTTCEEEECCHHHHTTC-----
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 99999999724985899833676676654321002445667777898874205342188867688999999962354545
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~~GC~~C~~~Gy~GR~~v~Evl~~d~~l~~~I~~~~~~~~l~~~~~~g~~tl~~~a~~~v~~G~~s~eEv~R~ 400 (401)
T d1p9ra_ 321 EPLILYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAMEKHIRATTPSIRDDGLDKVRQGITSLEEVMRG 400 (401)
T ss_dssp CCCEEEECCCCSSSCSSSEEEEEEEEEEEECCHHHHHHHHTTCCHHHHHHHHHTTCCCHHHHHHHHHHTTSSCHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHC
T ss_conf 66379808996303799888732999998189999999984998999999998099029999999998599989998243
Q ss_pred C
Q ss_conf 5
Q 000920 1082 K 1082 (1223)
Q Consensus 1082 ~ 1082 (1223)
.
T Consensus 401 ~ 401 (401)
T d1p9ra_ 401 S 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: UDP-glucosyltransferase GtfB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=30253.39 Aligned_cols=1 Identities=0% Similarity=-0.759 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 mkil~~~~gt~Gh~~P~lala~~L~~~Gh~V~~~~~~~~~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (401)
T d1iira_ 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEVGVPHVPVGPSARAPIQRAKPLTAEDVRRFTTEAI 80 (401)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEECCC-------CCSCCCHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 97999889872689999999999998799899996830677898769748977850654541035200799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (401)
T d1iira_ 81 ATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPYYPPPPLGEPSTQDTIDIPAQWERNNQ 160 (401)
T ss_dssp HHHHHHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCC---------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHH
T ss_conf 99999999976147642774124257888988887535422344565445532356412466542100001135566566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (401)
T d1iira_ 161 SAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTDHPWVAADPVLAPLQPTDLDAVQTGAWILPDERPLSPELAAFLDAGPPP 240 (401)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCCCCCSSCCEECCCCCCCCCCCCCHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCE
T ss_conf 77877778888999984476410233210231023235644467777654332236755676555677888763148975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 i~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p~~~~l~~~~~~V~hgG~~t~~Eal~~ 320 (401)
T d1iira_ 241 VYLGFGSLGAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLFGRVAAVIHHGGAGTTHVAARA 320 (401)
T ss_dssp EEEECC---CCHHHHHHHHHHHHHTTCCEEECTTCTTCCCSSCGGGEEECSSCCHHHHGGGSSEEEECCCHHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHCCEEEECCCCHHHHHHHHH
T ss_conf 99715754665689999999999769807984267764233578978997025879999545899963771699999981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 GvP~v~~P~~~DQ~~na~~l~~~G~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~a~~~~~~~~~~~~~~aa~~i~~~i~r 400 (401)
T d1iira_ 321 GAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATALTPETHARATAVAGTIRTDGAAVAARLLLDAVSR 400 (401)
T ss_dssp TCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHT
T ss_pred CCCEEECCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 99999806614179999999987988876847899999999999996979999999999998750839999999999846
Q ss_pred C
Q ss_conf 5
Q 000920 1082 K 1082 (1223)
Q Consensus 1082 ~ 1082 (1223)
.
T Consensus 401 ~ 401 (401)
T d1iira_ 401 E 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-vancosaminyltransferase GftD species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=30252.87 Aligned_cols=1 Identities=0% Similarity=-0.261 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 mrIl~~~~gt~Ghv~P~l~lA~~L~~rGh~V~~~t~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (401)
T d1rrva_ 1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVGVPHVPVGLPQHMMLQEGMPPPPPEEEQRLAAMT 80 (401)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEECSCCGGGCCCTTSCCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 94999889875689999999999998799899997834677898779748976870776421566543378999989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (401)
T d1rrva_ 81 VEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPHLPPAYDEPTTPGVTDIRVLWEERAA 160 (401)
T ss_dssp HHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCBCSCCCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999844898599982842668999999827974000000000102556423465556532001246788887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~v 240 (401)
T d1rrva_ 161 RFADRYGPTLNRRRAEIGLPPVEDVFGYGHGERPLLAADPVLAPLQPDVDAVQTGAWLLSDERPLPPELEAFLAAGSPPV 240 (401)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCSSCEECSCTTTSCCCSSCCCEECCCCCCCCCCCCCHHHHHHHHSSSCCE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHCCHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCEE
T ss_conf 77765478999999983785331255430354211011133203577788689788866655459989997522479839
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~I~hgG~~t~~Eal~ 320 (401)
T d1rrva_ 241 HIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTELVLPDDRDDCFAIDEVNFQALFRRVAAVIHHGSAGTEHVATR 320 (401)
T ss_dssp EECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTCCCSCCCTTEEEESSCCHHHHGGGSSEEEECCCHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEECCCCHHHHHHHH
T ss_conf 99878644578899999999998626974899505443455457898899731481777621248886177248999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~GvP~l~~P~~~DQ~~na~~v~~~G~g~~l~~~~~~~~~L~~ai~~vl~~~~r~~a~~~~~~~~~~g~~~aa~~ie~~~~ 400 (401)
T d1rrva_ 321 AGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTVLAPETRARAEAVAGMVLTDGAAAAADLVLAAVG 400 (401)
T ss_dssp HTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHHTSHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred HCCCEEEECCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_conf 39998980661208999999998798897574789999999999998497999999999998755179999999999857
Q ss_pred C
Q ss_conf 5
Q 000920 1082 K 1082 (1223)
Q Consensus 1082 ~ 1082 (1223)
+
T Consensus 401 r 401 (401)
T d1rrva_ 401 R 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 6
|
| >d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Terpenoid cyclases/Protein prenyltransferases family: Protein prenyltransferases domain: Protein farnesyltransferase, beta-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30252.65 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~t~ts~~q~~~e~~~~~~~~~~~~~~~~~~~~L~r~~H~~y~~~~L~~lp~~~~~lD~~r 80 (401)
T d2h6fb1 1 EPLYSLRPEHARERLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDASR 80 (401)
T ss_dssp CCCGGGSGGGGGGSCCCTTCCCHHHHHHHHHHHHHHHHHHTTCBTTBCCCCCCCHHHHHHHHHHHTTEECGGGGGGTTCH
T ss_pred CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCC
T ss_conf 97345467664331468898637889999999999999987534037865532599999999999986988760625462
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~l~yw~l~~L~LL~~~~~~~~~~~ii~~l~~~q~~~GGF~g~pg~~~hla~Ty~Al~~L~ilg~~~~~~~idR~~i~~f 160 (401)
T d2h6fb1 81 PWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQY 160 (401)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 99999999999985998538999999999999718999968999987433999999999997177521023339999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 L~slQ~pDGsF~~~~~ge~D~R~~Y~Av~i~~lL~~~~~~~~~~~~~~I~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~ 240 (401)
T d2h6fb1 161 LYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALV 240 (401)
T ss_dssp HHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99951888980002367766212699999999958997778999999999806888874578788763539899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 lL~~~~~~d~~~l~~WL~~RQ~~~eGGF~GR~nKlvD~CYSfW~ga~l~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yiL 320 (401)
T d2h6fb1 241 ILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYIL 320 (401)
T ss_dssp HHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 84788645899999999973778778437887887635788899889999999861246631113333437999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~Q~~~GGf~d~Pg~~pD~yHT~y~L~gLSl~~~~~~~~~~~~~~~~~~~~~l~~~~P~~~i~~~~~~~~~~~f~~~p~ 400 (401)
T d2h6fb1 321 MCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQKPV 400 (401)
T ss_dssp HHSBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHHEEEETTEEEECCCSSGGGCCCCCCTTTSSCHHHHHHHHHHHHTSCC
T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 97478999948897899870088899999986577676676643235775346633798615889999999999985899
Q ss_pred C
Q ss_conf 5
Q 000920 1082 K 1082 (1223)
Q Consensus 1082 ~ 1082 (1223)
+
T Consensus 401 ~ 401 (401)
T d2h6fb1 401 P 401 (401)
T ss_dssp T
T ss_pred C
T ss_conf 9
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=30252.05 Aligned_cols=1 Identities=100% Similarity=2.065 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 ~~~m~~~~~~~~~~~l~~~~~~g~~r~~~~i~~~~g~~v~~~dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~ 80 (401)
T d1fc4a_ 1 GSHMRGEFYQQLTNDLETARAEGLFKEERIITSAQQADITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMA 80 (401)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCSCSSSEEEBTTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 96044899999999999999759987513304788884893499889998765402546899999999999998198865
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~sr~~~g~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~d 160 (401)
T d1fc4a_ 81 SVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANND 160 (401)
T ss_dssp SCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTTC
T ss_pred CCEEECCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHCCCCCCCCEEEEECCCC
T ss_conf 42131257088999999888761677447734445666789997457886899677643888705122575079975788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~di 240 (401)
T d1fc4a_ 161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDI 240 (401)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSE
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHCCCCCCCCCCCCCHHCCCCCCCEE
T ss_conf 47899999985514567159997577789895565057898875428189800210145145799850101268888729
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 i~~tl~Ka~gg~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g 320 (401)
T d1fc4a_ 241 ITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAG 320 (401)
T ss_dssp EEEESSSTTCSSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99651430156776111378789999871792665067888788998875431234689999999987899986401358
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~~~~pIv~v~~~~~~~a~~~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~lg~i 400 (401)
T d1fc4a_ 321 FTLAGADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGVI 400 (401)
T ss_dssp CCBCCSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 76379999879999799999999999999789059758899789998439999787799999999999999999984888
Q ss_pred C
Q ss_conf 5
Q 000920 1082 K 1082 (1223)
Q Consensus 1082 ~ 1082 (1223)
.
T Consensus 401 ~ 401 (401)
T d1fc4a_ 401 A 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=0 Score=30251.54 Aligned_cols=1 Identities=100% Similarity=1.201 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~p~d~i~~~~~~~~~d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~ai 80 (401)
T d7aata_ 1 SSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRAS 80 (401)
T ss_dssp CCSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 97010689799986999999983778999588617877688899898789999999996289888889977789999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 a~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~ 160 (401)
T d7aata_ 81 AELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSL 160 (401)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEE
T ss_pred HHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 99984247865576753885462578899999876674358985599816777640258998599689985424446665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 240 (401)
T d7aata_ 161 DFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 240 (401)
T ss_dssp CHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTC
T ss_pred CHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf 37888888722777618999647889855458999999999987356379998636144314886553356666532201
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 320 (401)
T d7aata_ 241 DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMAD 320 (401)
T ss_dssp CCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 13406751330005515531021261888889888888888764033563057888998841787889999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~gV~~~pg~Ris~a~~~~~~i~~la~ai~~v~ 400 (401)
T d7aata_ 321 RIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999857988863577997589953979999999998299998897179852699888999999999974
Q ss_pred C
Q ss_conf 5
Q 000920 1082 K 1082 (1223)
Q Consensus 1082 ~ 1082 (1223)
|
T Consensus 401 k 401 (401)
T d7aata_ 401 K 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Hormone binding domain of the atrial natriuretic peptide receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30251.13 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~a~~~~~i~igvllP~tg~~~~~~~~~~~a~~lAv~~iN~~g~~~~~~~~g~~i~~~~~D~~~~~~~~~~~~~~l~~~~~ 80 (401)
T d1jdpa_ 1 EALPPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARG 80 (401)
T ss_dssp CCCCCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 99899722899997799940221678999999999999866786556789948999998289997999999999997366
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~is~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~~~v~il~~ 160 (401)
T d1jdpa_ 81 AKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYS 160 (401)
T ss_dssp CCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 88089999987503678878888619854631445542122345677279831546889999999877517737999995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~i~~~~~~~g~~~~~~~ 240 (401)
T d1jdpa_ 161 DDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYA 240 (401)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCCCHHHHHHHHHHHCSEEEEESCHHHHHHHHHHHHHTTCTTTTCE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 68652057899998888736534899740245676268999998632574069999346889999999998188888769
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~a~~~yDav 320 (401)
T d1jdpa_ 241 FFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFHDAI 320 (401)
T ss_dssp EEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 99633114643347301025542367888865414212458898689999999999984067776666207889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~l~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~Gdr~~~~~~~~~~~~~~g~~~~Vg~~~~~~~~~~~~ 400 (401)
T d1jdpa_ 321 LLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAMTDVEAGTQEVIGDYFGKEGRFEMR 400 (401)
T ss_dssp HHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTTSBBCCEEEEEEEEETTTTEEEEEEEEETTTTEEEEC
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEECCCEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCEEEEE
T ss_conf 99999999998568999889999999867917717668998999882576799999997898799999998997669974
Q ss_pred C
Q ss_conf 5
Q 000920 1082 K 1082 (1223)
Q Consensus 1082 ~ 1082 (1223)
+
T Consensus 401 ~ 401 (401)
T d1jdpa_ 401 P 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum [TaxId: 56]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450epok species: Sorangium cellulosum [TaxId: 56]
Probab=100.00 E-value=0 Score=30250.60 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~p~~~~dP~~~~~~lr~~gPv~~~~~~~~~vvt~~~~v~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (401)
T d1q5da_ 1 DFKPFAPGYAEDPFPAIERLREATPIFYWDEGRSWVLTRYHDVSAVFRDERFAVSREEWESSAEYSSAIPELSDMKKYGL 80 (401)
T ss_dssp CCCTTSTTTTTCCHHHHHHHHHHCSEEEETTTTEEEECSHHHHHHHHTCTTEECCGGGSTTHHHHHHSSGGGHHHHHHST
T ss_pred CCCCCCHHHHHCCHHHHHHHHHCCCEEEECCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf 97989867885949999999846998997999989983999999996598735475433454444655510233013651
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~dg~~h~~~Rk~l~~~fs~~~l~~~~~~i~~~~~~l~~~~~~~~~~d~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (401)
T d1q5da_ 81 FGLPPEDHARVRKLVNPSFTSRAIDLLRAEIQRTVDQLLDARSGQEEFDVVRDYAEGIPMRAISALLKVPAECDEKFRRF 160 (401)
T ss_dssp TTSCHHHHHHHHHHHGGGGSHHHHGGGHHHHHHHHHHHHHHHTTSSCEETTTTTGGGSHHHHHHHHTTCCGGGHHHHHHH
T ss_pred CCCCHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 46888889876320421134213566788889888888876531011111578776543101100001100237888888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~l~~l~~~~~~~~~~~~~~i~~~~~~~l~ag 240 (401)
T d1q5da_ 161 GSATARALGVGLVPRVDEETKTLVASVTEGLALLHGVLDERRRNPLENDVLTMLLQAEADGSRLSTKELVALVGAIIAAG 240 (401)
T ss_dssp HHHHHHHTTTTTSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999875112222101677888899999999999877754125644327889876304565207889999999987046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~etta~~l~~~l~~L~~~p~~~e~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~g~~ip~G~~v~~~~~~~~r 320 (401)
T d1q5da_ 241 TDTTIYLIAFAVLNLLRSPEALELVKAEPGLMRNALDEVLRFDNILRIGTVRFARQDLEYCGASIKKGEMVFLLIPSALR 320 (401)
T ss_dssp SHHHHHHHHHHHHHHHHCHHHHHHHHHCGGGHHHHHHHHHHHSCSBSSEEEEEESSCEEETTEEECTTCEEEEEHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 32024677778999975299999864465323343210000011134433323345620257666764067421002478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 dp~~f~dP~~F~PeR~~~~~lpFg~G~r~C~G~~lA~~e~~~~la~ll~rf~~~~l~~~~~~~~~~~~r~~~~l~v~~~p 400 (401)
T d1q5da_ 321 DGTVFSRPDVFDVRRDTSASLAYGRGPHVCPGVSLARLEAEIAVGTIFRRFPEMKLKETPVFGYHPAFRNIESLNVILKP 400 (401)
T ss_dssp CTTTSSSTTSCCTTSCCTTCCTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCTTCEECSCCEECCCSSBCCEEECEEESSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEECCCCCCCCCCCCEEEEEC
T ss_conf 82227995434889999999998997558822999999999999999996799848899840678765686645399961
Q ss_pred C
Q ss_conf 5
Q 000920 1082 K 1082 (1223)
Q Consensus 1082 ~ 1082 (1223)
.
T Consensus 401 ~ 401 (401)
T d1q5da_ 401 S 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=30250.31 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG 80 (401)
T d1a12a_ 1 KKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALG 80 (401)
T ss_dssp CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTC
T ss_pred CCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCEEECCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCC
T ss_conf 93106678999789889999699988889999886503577908999929999189889999679989999589998877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g 160 (401)
T d1a12a_ 81 RDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASG 160 (401)
T ss_dssp SCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEC
T ss_conf 44655664235542354220022011100101000345311202145655544666775431001100168850699820
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~ 240 (401)
T d1a12a_ 161 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 240 (401)
T ss_dssp SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCC
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCEEEEEECCCE
T ss_conf 35225650378500346687662288875344567755544335652000035677778439999936876999955981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~ 320 (401)
T d1a12a_ 241 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTL 320 (401)
T ss_dssp EEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEE
T ss_pred EEEECCCCEECCCCCCCCCCEECCCCCCCCCCCEEEEEEEEECCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf 86512221020354566310000010123554036999851012013561489788840334675678862333558888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 i~~~~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~~~v~~v~~G~~hs~~l~~d~~~ 400 (401)
T d1a12a_ 321 ISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 400 (401)
T ss_dssp CCSSSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred CCCCCCEEEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCCCEECCEEEECCCCCCCEEEEEEECCCEEEEEEECCCC
T ss_conf 57999829999308879999489969999259988778999988860789643578998899999752439999979966
Q ss_pred C
Q ss_conf 5
Q 000920 1082 K 1082 (1223)
Q Consensus 1082 ~ 1082 (1223)
.
T Consensus 401 ~ 401 (401)
T d1a12a_ 401 S 401 (401)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RNB domain-like domain: Ribonuclease II family protein DR0020 species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=0 Score=30249.99 Aligned_cols=1 Identities=0% Similarity=-0.527 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~p~~~~~~~v~ve~~~~~~~~~~~i~~~lg~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 80 (401)
T d2r7da2 1 QPELTPAQRTEVELLARGRADKSRVLRDLKLPETPEAAHALLLRLGVWDEARTPYADRLRAALNAVELPVPDFDPAEERL 80 (401)
T ss_dssp CCCCCHHHHHHHHHHHTTSCSCCHHHHHTTCCCSHHHHHHHHHHHTSSCTTCCCHHHHTTCCCSCCCCCCCCCCTTSCCE
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99899888899998123899973124522999996569999998199865566780999999863267888743334661
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 Dlr~l~~~tID~~~a~D~DDAisie~~~~g~~~l~VHIADVs~~v~~~s~Ld~eA~~R~tSvYlp~~~~pMLP~~ls~~~ 160 (401)
T d2r7da2 81 DLTHLPTFAIDDEGNQDPDDAVGVEDLGGGLTRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDELVAKA 160 (401)
T ss_dssp ECTTSCEEEEECTTCCCCCEEEEEEECSTTCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHHHH
T ss_pred CCCCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEECCHHHHCCCCCHHHHHHHHHCCCCCCCCCEEECCCHHHHCCC
T ss_conf 52028679988998864421036787479968999961356662067776899999858464089972423758874132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 SL~~~~~r~als~~~~ld~~g~i~~~~~~~s~I~~~~ltY~~v~~~~~~~~~~l~~l~~~~~~l~~~R~~~gal~~~~~~ 240 (401)
T d2r7da2 161 GLGLHEVSPALSICLDLDPDGNAEAVDVLLTRVKVQRLAYQEAQARLEAGEEPFVTLARLARASRRLREGEGALSIDLPE 240 (401)
T ss_dssp STTSSSSEEEEEEEEEECTTSCEEEEEEEEEEECEEEEEHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 24567566541147887267872332488878998301277899886314136788888999999999866884335654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~d~~~~~~~~~~~~~s~~lVeE~MilAN~~~A~~l~~~~~p~iyR~~~~p~~~~~~~~l~~~~~~~~~~~~a~ys~ 320 (401)
T d2r7da2 241 VRVKADETGASVFPLPKPEMRTVVQECMTLAGWGTAIFADDNEIPLPFATQDYPTREVAGDTLPAMWARRKTLARTRFQP 320 (401)
T ss_dssp EEEEEETTEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCCSSCCCCCSHHHHHHHHHHCCCEEEES
T ss_pred CEEEECCCCCCCCEEECCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCEEEECC
T ss_conf 20221367751002541312456676765301548999864368753103678824432110788887640044006758
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~H~gLgl~~YthfTSPIRRY~DLivhrqL~a~L~~~~~~~~~~l~~~~~~~~~~~~~~~~~er~~~~~~~~~yl~~~ 400 (401)
T d2r7da2 321 SPGPHHGMGLDLYAQATSPMRRYLDLVVHQQLRAFLAGRDPLSSKVMAAHIAESQMNADATRQAERLSRRHHTLRFIAAQ 400 (401)
T ss_dssp SCCCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98867110678606269725405789999999999769999999999999999999999999999999999999999859
Q ss_pred C
Q ss_conf 5
Q 000920 1082 K 1082 (1223)
Q Consensus 1082 ~ 1082 (1223)
+
T Consensus 401 p 401 (401)
T d2r7da2 401 P 401 (401)
T ss_dssp T
T ss_pred C
T ss_conf 2
|
| >d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp154a1 monooxygenase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=0 Score=30248.95 Aligned_cols=1 Identities=0% Similarity=0.039 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~dp~~~d~~~~~~~lr~~Gpv~~~~~~g~~~vvv~~~~~v~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (401)
T d1odoa_ 1 ALVLDPTGADHHTEHRTLREGGPATWVDVLGVQAWSVSDPVLLKQLLTSSDVSKDARAHWPAFGEVVGTWPLALWVAVEN 80 (401)
T ss_dssp CEECCTTCTTHHHHHHHHHTTCSEEEEEETTEEEEEECCHHHHHHHTTCTTEESCHHHHCTTHHHHTTTCTTTHHHHCCS
T ss_pred CEECCCCCCCHHHHHHHHHHHCCEEEEECCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 94358899981999999996399899964991199988999999996397724366666532223455541123304787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 l~~~~g~~h~~~R~~l~~~fs~~~v~~~~~~i~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~~~ 160 (401)
T d1odoa_ 81 MFTAYGPNHRKLRRLVAPAFSARRVDAMRPAVEAMVTGLVDRLAELPAGEPVDLRQELAYPLPIAVIGHLMGVPQDRRDG 160 (401)
T ss_dssp GGGCCHHHHHHHHHTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCEEHHHHTTTHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHH
T ss_conf 62388599999999877651721477777788999999976422013332222321000000011221235653112123
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~~~~l~~~g~~t 240 (401)
T d1odoa_ 161 FRALVDGVFDTTLDQAEAQANTARLYEVLDQLIAAKRATPGDDMTSLLIAARDDEGDGDRLSPEELRDTLLLMISAGYET 240 (401)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 44455554310102578899999999999987664136776642232112333334689799999999999998656521
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~e~~R~~p~~~~~~~~~~~~d~~~~~G~~ip~Gt~v~~~~~~~hrd~ 320 (401)
T d1odoa_ 241 TVNVIDQAVHTLLTRPDQLALVRKGEVTWADVVEETLRHEPAVKHLPLRYAVTDIALPDGRTIARGEPILASYAAANRHP 320 (401)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTSSCHHHHHHHHHHHSCSBSCEEEEEESSCEECTTSCEECTTCEEEECHHHHTTCT
T ss_pred HHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCEEECCCCCCCCCHHHHHCCC
T ss_conf 02355543201343214431001233311000001111112455333322346525229779617952324488870772
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 321 ~~~~dp~~F~PeR~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~l~~~~~~~~~~~~~~~~~~~~lpv~~~ 400 (401)
T d1odoa_ 321 DWHEDADTFDATRTVKEHLAFGHGVHFCLGAPLARMEVTLALESLFGRFPDLRLADPAEELPPVPSLISNGHQRLPVLLH 400 (401)
T ss_dssp TTSTTTTSCCTTCSCCCCCTTCSSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESCTTSCCCBCSCSSBCCBSCCEEECC
T ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 22896543287878999987789884783599999999999999999779868899877771467875579874059983
Q ss_pred C
Q ss_conf 5
Q 000920 1082 K 1082 (1223)
Q Consensus 1082 ~ 1082 (1223)
.
T Consensus 401 ~ 401 (401)
T d1odoa_ 401 A 401 (401)
T ss_dssp -
T ss_pred C
T ss_conf 9
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=30174.07 Aligned_cols=1 Identities=0% Similarity=0.404 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~dl~ss~~~~~~~~~~~~~~l~~e~~~~i~~~~~~~~~~~~~~~i~~~l~~~~~~~l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 1 NDLPSSFTGYFKKFNTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp CCHHHHHHHHHTTSCGGGCSSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 96178899999877654004409899999998861777989999999997443677179998999997899999995888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~d~~l~~~l~~ 160 (400)
T d1tq4a_ 81 NEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM 160 (400)
T ss_dssp TTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 67775678999887044553110689707998379854333449999987433226599996588887889999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 161 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 69987999708632101354322011227889999999999999874899897797337764515899999999998399
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~l~~~~~~~i~~K~~~~~~~i~~~a~~a~~~~~iP~p~~~~~~d~~~l~~~l~~y~~~fGlD~~sL~~lA~~ 320 (400)
T d1tq4a_ 241 YKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAADLVNIIPSLTFLLDSDLETLKKSMKFYRTVFGVDETSLQRLARD 320 (400)
T ss_dssp GGHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHTCCBSSCTTSSCCCHHHHHHHHHHHHHHHHHTTCSHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999998516657999999899999999999999734246886303201329999999999999809998999999999
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~~lka~iks~~~~~~~~~~~i~~~l~k~~~~~~~~~G~~~a~~~~f~~~~~l~~~~l~~~aedak~~l~~~~~~n 400 (400)
T d1tq4a_ 321 WEIEVDQVEAMIKSPAVFKPTDEETIQERLSRYIQEFCLANGYLLPKNSFLKEIFYLKYYFLDMVTEDAKTLLKEICLRN 400 (400)
T ss_dssp SSSCHHHHHHTCSHHHHTSSCCHHHHHHHHHHHHHHHHHHHCCSSSTTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 29989999999708366555567899999999887883052389999999999999999999999999999999986559
|
| >d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate transeliminase domain: Pectate transeliminase species: Erwinia chrysanthemi [TaxId: 556]
Probab=100.00 E-value=0 Score=30173.48 Aligned_cols=1 Identities=0% Similarity=0.437 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~YVs~~Gsd~~~Gs~~~p~~tIq~Ai~~a~~GDtI~v~~GtY~~~~~~~~~~~~~~~~~G~~~~ 80 (400)
T d1ru4a_ 1 ADCSSDLTSGISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGA 80 (400)
T ss_dssp CCCTTCTTTTCCCSCEEEECTTCCTTCCSSSTTSCBCHHHHHHHCCTTCEEEECSEEEECCCBTTBCCCEEECCCCBTTB
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCEEECCEEECCCEEEEEECCCCCCC
T ss_conf 97532000564447769997998679998722447889999983899599998695516651205753899723777897
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~i~i~~~~~~~~vi~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~n~~i~~~~~~g~~~~~~~ 160 (400)
T d1ru4a_ 81 PIYVAAANCGRAVFDFSFPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGG 160 (400)
T ss_dssp CEEEEEGGGCCEEEECCCCTTCCCTTCCSEEECSSCEEEESEEEESCSSCSEEECSSSCEEESCEEESCSSCSEEECTTC
T ss_pred EEEEECCCCCEEEEECCCCCCCCCCCCCEEEEECCCEEEECCEEECCCCEEEEECCCCCCCCCCEEECCCCCEEEEECCC
T ss_conf 29996079972599587623343323431787447479944342067111222023421024526852775117885555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~G~~~~~~~~~~~i~nn~~~~n~~~~~~~~~~ 240 (400)
T d1ru4a_ 161 SYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAF 240 (400)
T ss_dssp CSCEEESCEEECCCCTTTTTSSCCSEEECTTCCSCCEEESCEEESCSSCSEECTTCCSCCEEESCEEESTTCCCSCCTTC
T ss_pred CCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEECCEEEECCCCCEEEEECCCCEEEECEEEECCCCCCCCCCCC
T ss_conf 42179974677134565442222024689612566166433566426766368824898799775998654101456430
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~n~~~~n~~~g~~~~~~~~~~~i~nN~~~~n~~~~~~~~~~~~~~~~~~~nN~~~~~~~ 320 (400)
T d1ru4a_ 241 AGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSASV 320 (400)
T ss_dssp CCCCCSEECCCTTCCCCCEEESCEEESCSSEEEECTTCSSCCEEESCEEESSSEEEEECSCCCTTCCEEEESCEEESSCE
T ss_pred CCCCCEEECCCCCCCCCEEEEEEEEECCCCCCEEECCCCCCCCEECCEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCE
T ss_conf 01373365047776665589877886366553040357664112265687255430343223567650798328834740
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~Spai~aG~~~~~~~~~G~~pDiGAyE~~ 400 (400)
T d1ru4a_ 321 TVSNADAKSNSWDTGPAASASDFVSLDTSLATVSRDNDGTLPETSLFRLSANSKLINAGTKESNISYSGSAPDLGAFERN 400 (400)
T ss_dssp EECSEEEESSTTTTSCCCCGGGBSBCCGGGGGCCCCTTCCCCCCSBTCBCTTCTTTTCSCCCTTCCCSTTSCCSSSCCCC
T ss_pred EEECCCCCCCEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 34134323522546730147761674643244656777767768884378998100487877788989986776777588
|
| >d3ovwa_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Fusarium oxysporum [TaxId: 5507]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: Glycosyl hydrolase family 7 catalytic core domain: Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) species: Fusarium oxysporum [TaxId: 5507]
Probab=100.00 E-value=0 Score=30173.38 Aligned_cols=1 Identities=0% Similarity=-0.825 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 q~~~~t~E~HP~ltwq~CT~~ggCt~~~g~vV~D~nwrw~h~~~g~~~c~~gn~w~~~lCpd~~tCa~nC~ldGad~~~y 80 (400)
T d3ovwa_ 1 ETPDKAKEQHPKLETYRCTKASGCKKQTNYIVADAGIHGIRQKNGAGCGDWGQKPNATACPDEASCAKNCILSGMDSNAY 80 (400)
T ss_dssp CEECSSCCCCCEEEEEEEETTTEEEEEEEEEEECHHHHCEECTTSCBSCCTTSCCCTTTCSSHHHHHHHCEECCCCHHHH
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCEECCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 98887676588523265058998586233499824733244058973234388565344887566676435237664555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~GVttsG~sLtl~~vt~~~~vGsRvYLl~~d~~~Yqmf~Llg~EfTFdVD~S~lpCGlNgALYfveM~adGg~s~~~~ 160 (400)
T d3ovwa_ 81 KNAGITTSGNKLRLQQLINNQLVSPRVYLLEENKKKYEMLHLTGTEFSFDVEMEKLPCGMNGALYLSEMPQDGGKSTSRN 160 (400)
T ss_dssp HHTTEEEETTEEEEESEETTEECCCEEEEECTTSSSBCEECCTTCEEEEEEECTTCCTTEEEEEEEECCCTTTTGGGCTT
T ss_pred CCEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCC
T ss_conf 40569953881899857548832621899757877357899338678888633568764322565662167778666788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 n~aGAkYGtGYCDAQC~d~kfInG~aNv~g~GsCC~EmDIwEANs~a~a~TpH~C~~~g~~~C~g~~Cg~~g~CD~~GC~ 240 (400)
T d3ovwa_ 161 SKAGAYYGAGYCDAQCYVTPFINGVGNIKGQGVCCNELDIWEANSRATHIAPHPCSKPGLYGCTGDECGSSGICDKAGCG 240 (400)
T ss_dssp CCCTGGGTCCCCBTTCCBCSEETTEECTTCCEEECCEEEEEEECSSCEEEEEECBSSCSCEEECGGGGSTTSSBCSSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 76666367722113156243205621346655555641101110455320688656787336457767888860888867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 fNpYR~g~~~FyG~G~~~tVDT~k~fTVVTQF~~~~~G~L~eIrR~YVQ~GkvI~n~~~~~~g~~~~~sit~~fC~~~~~ 320 (400)
T d3ovwa_ 241 WNHNRINVTDFYGRGKQYKVDSTRKFTVTSQFVANKQGDLIELHRHYIQDNKVIESAVVNISGPPKINFINDKYCAATGA 320 (400)
T ss_dssp BCGGGGTCTTSEESSTTSSEETTSCEEEEEEEEECTTSCEEEEEEEEEETTEEEECCCCCSSSSCSCSSBCHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 67433488754878987142379973899788708985368998999609999668875677887677346677546786
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~f~~~GGl~~mg~al~rGmVLv~SlWdd~~~~M~WLDsg~~GpC~~tsg~p~~ve~~~p~a~Vt~SNIKfG~I~STy~~ 400 (400)
T d3ovwa_ 321 NEYMRLGGTKQMGDAMSRGMVLAMSVWWSEGDFMAWLDQGVAGPCDATEGDPKNIVKVQPNPEVTFSNIRIGEIGSTSSV 400 (400)
T ss_dssp HHHHHTTHHHHHHHHHHHCEEEEEEEEECTTTTTHHHHBTTSCSBCSSTTSHHHHHHHCSSCEEEEEEEEEESTTCSCCC
T ss_pred CHHHHCCCHHHHHHHHCCCEEEEEEEEECCCCCCEECCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECEECCCCCCCCC
T ss_conf 42443476889888850886999986847999866204898878888888855651328997799860768577763119
|
| >d1inpa_ e.7.1.1 (A:) Inositol polyphosphate 1-phosphatase {Cow (Bos taurus), brain [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Carbohydrate phosphatase superfamily: Carbohydrate phosphatase family: Inositol monophosphatase/fructose-1,6-bisphosphatase-like domain: Inositol polyphosphate 1-phosphatase species: Cow (Bos taurus), brain [TaxId: 9913]
Probab=100.00 E-value=0 Score=30170.92 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~l~~~l~~aekAa~iar~~~~~~~l~~~~v~ek~~~~~~~k~~~D~VT~AD~~aq~~I~~~L~~~fP~~~~~IvGEE 80 (400)
T d1inpa_ 1 MSDILQELLRVSEKAANIARACRQQETLFQLLIEEKKEGEKNKKFAVDFKTLADVLVQEVIKENMENKFPGLGKKIFGEE 80 (400)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHSHHHHTCCCCSCCCCTTTTCCCCHHHHHHHHHHHHHHHHHHHHHSTTGGGGEEESS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCC
T ss_conf 96899999999999999999998501687767643136534626799984189999999999999987869999988158
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~IDPIDGT~~ 160 (400)
T d1inpa_ 81 SNELTNDLGEKIIMRLGPTEEETVALLSKVLNGNKLASEALAKVVHQDVFFSDPALDSVEINIPQDILGIWVDPIDSTYQ 160 (400)
T ss_dssp CSEEECTTSCEEECCCCSSCSCHHHHHHHHTTTCTTHHHHHHHHHTCCCCCCCSSSSSCCCCCCGGGEEEEEEEEECHHH
T ss_pred CCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEECCCCCHH
T ss_conf 88654544311122024136666666543114542023342023231100011001232356787656299952758420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 Fi~G~~~~~v~iaL~~~~~~~v~vlI~lal~~~G~Pv~GvI~~P~~~~~~~~~~~~G~~~~a~~g~Ga~~~~~~~~~~~~ 240 (400)
T d1inpa_ 161 YIKGSADITPNQGIFPSGLQCVTVLIGVYDIQTGVPLMGVINQPFVSQDLHTRRWKGQCYWGLSYLGTNIHSLLPPVSTR 240 (400)
T ss_dssp HHHCCCCCCCBTTBCSSSGGGCEEEEEEEETTTCCEEEEEEEEEEEEECTTTCCEEEEEEEEEESSSEEECCSCCTTSST
T ss_pred HCCCCCCCEEEEEHHCCCCCCCEEEEEEHHEECCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 12699643255500126665313565201007897898475455446400023678428997437673236766665544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~g~a~~k~~~VA~G~~D~yl~~~~~~~~WD~aA 320 (400)
T d1inpa_ 241 SNSEAQSQGTQNPSSEGSCRFSVVISTSEKETIKGALSHVCGERIFRAAGAGYKSLCVILGLADIYIFSEDTTFKWDSCA 320 (400)
T ss_dssp TTSSCSSCCCCBTTBTTSSSSCCEEEECTTCCSCCCCTTTTCCEEEECCCHHHHHHHHHHTSCSEEEECSSCCBHHHHHH
T ss_pred CCCCCCCEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
T ss_conf 44322201025675333454047850345389999999747954997558899999996899888995578998788799
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 g~~Il~eaGG~VtD~~G~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~N~~giIA~~~~~~h~~~l~~l~~~l~~~~~~~ 400 (400)
T d1inpa_ 321 AHAILRAMGGGMVDLKECLERNPDTGLDLPQLVYHVGNEGAAGVDQWANKGGLIAYRSEKQLETFLSRLLQHLAPVATHT 400 (400)
T ss_dssp HHHHHHTTTCEEEEHHHHHHSCTTSSCSTTBCCSSCCSTTTTTTCTTBCTTCEEEESCHHHHHHHTCCCTTTCCCCSCCC
T ss_pred HHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999978997987999962466544445210014443223553101556878997888999999999997633546789
|
| >d2olua2 e.3.1.1 (A:293-692) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Penicillin-binding protein 2, PBP2 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=30169.24 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~y~~~~d~v~~~l~~~~~~~~~~~~~~~~~G~~I~TTlD~~lQ~~ae~~l~~~~~~~~~~~~~a~vvvd~~TG~I 80 (400)
T d2olua2 1 TNQDSEYNSYVNFVKSELMNNKAFKDENLGNVLQSGIKIYTNMDKDVQKTLQNDVDNGSFYKNKDQQVGATILDSKTGGL 80 (400)
T ss_dssp CCCSGGGHHHHHHHHHHHTTSTTTTTSCHHHHTTBCCEEEECCCHHHHHHHHHHHHHCSCCSSTTEEEEEEEEETTTCBE
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCE
T ss_conf 99877557999999999986128766567786679988995889999999999998534214867528999998899959
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 lAm~~~~~y~~~~~~n~~~~~~~pGStfKp~v~~aaale~g~~~~~~~~~~~~~~~~~~~~~~n~~~~~~G~v~l~~Al~ 160 (400)
T d2olua2 81 VAISGGRDFKDVVNRNQATDPHPTGSSLKPFLAYGPAIENMKWATNHAIQDESSYQVDGSTFRNYDTKSHGTVSIYDALR 160 (400)
T ss_dssp EEEECSTTCCTTTSCCTTTSCEECGGGGHHHHTHHHHHHHTCCCTTBEEECCSSEEETTEEECCTTSCCCCEEEHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99997888883233321000003666556178899986458721110013334421111013366655553334322355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~S~N~~~v~l~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~lg~g~~~vtplqlA~aya~iANgG~~~~P~~v~~i~~ 240 (400)
T d2olua2 161 QSFNIPALKAWQSVKQNAGNDAPKKFAAKLGLNYEGDIGPSEVLGGSASEFSPTQLASAFAAIANGGTYNNAHSIQKVVT 240 (400)
T ss_dssp TTCHHHHHHHHHHHHHHTCTTHHHHHHHHTTCCCSSCCCHHHHTTCTTCEECHHHHHHHHHHHHTTSEEECCBCEEEEEC
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEECCCEEEEEEECCCCCC
T ss_conf 66511123200010024567889999987088731121100000123456778886400100005964787674011356
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~g~~v~~~~~~~~v~s~~~a~~l~~~l~~vv~~~Gt~~~~~~~g~~vagKTGTa~~~~~~~~~~~~~~~~~~daWFvG~ 320 (400)
T d2olua2 241 RDGETIEYDHTSHKAMSDYTAYMLAEMLKGTFKPYGSAYGHGVSGVNMGAKTGTGTYGAETYSQYNLPDNAAKDVWINGF 320 (400)
T ss_dssp TTSCEEECCCCEEECSCHHHHHHHHHHHHGGGSTTSTTTTCCCSSCCCEEEEEEECCCHHHHHHTTCCTTEESEEEEEEE
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 43232222222222113789999976521433541000111357814777611144576576544566687640799983
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~P~~~~~VwvG~d~~~~~~~~~~~~~~~~~~~a~i~~~~m~~~~~~~~~~f~~P~~v~~~~p~~~~~~~~~~~~~~~~~~ 400 (400)
T d2olua2 321 TPQYTMSVWMGFSKVKQYGENSFVGHSQQEYPQFLYENVMSKISSRDGEDFKRPSSVSGSIPSINVSGSQDNNTTNRSTH 400 (400)
T ss_dssp CSSEEEEEEEEESSCCGGGTTSEESHHHHTHHHHHHHHHHHHHSCCSCCCCCCCTTEESCTTCCEETTCCCSSBCCCCCC
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 69969999984688875676765676433579999999999975689666999998766777554789999998888889
|
| >d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Glycosyltrehalose trehalohydrolase, central domain species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]
Probab=100.00 E-value=0 Score=30168.89 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~viYe~~v~~f~~~Gd~~gi~~~ldyi~~LGv~~i~l~Pv~~~~~~~~~GY~~~d~~~vd~~~Gt~~dl 80 (400)
T d1eh9a3 1 FNNETFLKKEDLIIYEIHVGTFTPEGTFEGVIRKLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYGGPEGF 80 (400)
T ss_dssp CCSCCSCCSSSCCEEEECTTTSSSSCSHHHHHHTHHHHHHHTCCEEEECCCBCCSSSCCCSTTCCCTTCBCSTTCCHHHH
T ss_pred CCCCCCCCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99877688768599998312307899999999875899975998899687676889999997877778858221999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 k~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~v~~~l~d~~~~Wl~~~gvDGfR 160 (400)
T d1eh9a3 81 RKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKLGPYFSQKYKTPWGLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFR 160 (400)
T ss_dssp HHHHHHHHHTTCEEEEEECCSCCCSSSCCHHHHSCCSCSSCCCSSSCCCCSSSTTHHHHHHHHHHHHHHHHHHSCCCCEE
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999997637713542244642577850443100211234545564435565556079999999999887524663688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~Daa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (400)
T d1eh9a3 161 LDAVHAIIDTSPKHILEEIADVVHKYNRIVIAESDLNDPRVVNPKEKCGYNIDAQWVDDFHHSIHAYLTGERQGYYTDFG 240 (400)
T ss_dssp ETTGGGCCCCSSSCHHHHHHHHHHHTTCCEEECCCSCCTTTTSCGGGTCCCCSEEECHHHHHHHHHHHSCCCSGGGGGCC
T ss_pred EECHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEECCCCCCCCCHHHHHHHCCCCCCHHHHHH
T ss_conf 60434415114565589999987533222110100468442564553352000212665310467665033210145444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~a~a~~l~~pGi 320 (400)
T d1eh9a3 241 NLDDIVKSYKDVFVYDGKYSNFRRKTHGEPVGELDGCNFVVYIQNHDQVGNRGKGERIIKLVDRESYKIAAALYLLSPYI 320 (400)
T ss_dssp SHHHHHHHHHSSCSCSSEEETTTTEEECCCCCSCCGGGEECCSCCHHHHHTTTTCCCGGGGSCHHHHHHHHHHHHSSSSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 35789987543211221478999874465233304400443122046553356401267776656778999999848997
Q ss_pred -------------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 P~iy~G~E~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~lRk~~pv~ 400 (400)
T d1eh9a3 321 PMIFMGEEYGEENPFYFFSDFSDSKLIQGVREGRKKENGQDTDPQDESTFNASKLSWKIDEEIFSFYKILIKMRKELSIA 400 (400)
T ss_dssp CEEESSGGGTCCCCCCCCCCCCSTTHHHHHHHHHHHHTCCCSCTTSHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHTCS
T ss_pred CEEECCHHHCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 78977853288898875010266877666676405766789876552346556677657899999999999999678699
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=100.00 E-value=0 Score=30097.90 Aligned_cols=1 Identities=100% Similarity=1.201 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~p~~~~~~~LFsP~~Ig~~~lkNRiv~apm~~~~a~~~G~~~~~d~~i~yy~~rA~GG~GlIi~e~~~V~~~g~ 80 (399)
T d1oyaa_ 1 SFVKDFKPQALGDTNLFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAG 80 (399)
T ss_dssp CBCTTCCCCCCTTSGGGSCEEETTEEESSSEEBCCCCCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEEEEEEESSGGGC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCEEECCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCEEECCCCC
T ss_conf 97455888889999999973289988637668777667757899897987999999999972890799964377776547
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~l~~d~~i~~~k~l~~~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~g~~~~~~s~~~~~~~~~~~~~~~~~~~p~~ 160 (399)
T d1oyaa_ 81 GYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHS 160 (399)
T ss_dssp CCTTSCBSSSHHHHHHHHHHHHHHHHTTCEEEEEEECCGGGSCHHHHHHTTCCEEESCSSCCSCHHHHHHHHHTTCCEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 78998745787998888699999975201221233220234574211334445667543566777777666567887520
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 mt~~eI~~ii~~f~~AA~rA~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~I 240 (399)
T d1oyaa_ 161 LTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKV 240 (399)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCC
T ss_conf 15677888888999999999980975676124377789986413035665224765665457799998754340222574
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 gvRls~~d~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~PV 320 (399)
T d1oyaa_ 241 GLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPV 320 (399)
T ss_dssp EEEECTTCCTTTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSCTTSCTTSSCCCSCCTTHHHHHCCSCE
T ss_pred EEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE
T ss_conf 47853022025667741000577899999889874324543441122146677755454432111268999999829988
Q ss_pred ------------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 i~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~l~~K~~~G~~ln~~d~~~~~~~~~~gyt~~p~~~~~~~~~~~~~ 399 (399)
T d1oyaa_ 321 IRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMSAHGYIDYPTYEEALKLGWDKK 399 (399)
T ss_dssp EEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHHHTCCCBCCCGGGSSCSSSTTTTCCCCHHHHHHTTSSCC
T ss_pred EEECCCCCHHHHHHHHHCCCCEEHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 9978989869999999759981848879999791299999729998999653267899988084845499997489999
|
| >d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase {Fungus (Fusarium oxysporum) [TaxId: 5507]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cytochrome P450-NOR, nitric reductase species: Fungus (Fusarium oxysporum) [TaxId: 5507]
Probab=100.00 E-value=0 Score=30095.88 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~p~~~~~~~dP~~~~~~Lr~~gPv~~~~~~~g~~~~vvt~~~dv~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T d1jfba_ 1 APSFPFSRASGPEPPAEFAKLRATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSASGKQAAKAKP 80 (399)
T ss_dssp CCBSSCCCSSTTSCCTHHHHHHHHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99899898766596899999996399688763789569997699999999769763547654567654544211012477
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~l~~~dg~~h~~~R~~~~~~fs~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 160 (399)
T d1jfba_ 81 TFVDMDPPEHMHQRSMVEPTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCANGPVDLVKEFALPVPSYIIYTLLGVPFNDL 160 (399)
T ss_dssp CGGGCCTTHHHHHHTTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCEEHHHHTTTHHHHHHHHHHHTCCGGGH
T ss_pred CHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 32226869999987400764566532111026789899887454321244431024566655667788887651000036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~d~~~~~~~~~~~~~~~~~~ei~~~~~~~~~ag~~tt 240 (399)
T d1jfba_ 161 EYLTQQNAIRTNGSSTAREASAANQELLDYLAILVEQRLVEPKDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVAGNATM 240 (399)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHTTTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHH
T ss_conf 78888766531000027899999999999999999998630245544322222223577762112212334322002015
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~l~~~~~~L~~~pe~~~~L~~e~~~~~~~~~e~lr~~~~~~~~~~R~~~~~~~~~g~~ip~G~~V~~~~~~~~~dp~~ 320 (399)
T d1jfba_ 241 VNMIALGVATLAQHPDQLAQLKANPSLAPQFVEELCRYHTASALAIKRTAKEDVMIGDKLVRANEGIIASNQSANRDEEV 320 (399)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHCGGGHHHHHHHHHHHSCSCCSCCEEEESSCEEETTEEECTTCEEEECHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHH
T ss_conf 66999999998456589999741345321101101232223433333222013334577676653211114451578422
Q ss_pred ------------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~dP~~F~PeR~~~~~~~lpFG~G~r~C~G~~lA~~el~~~l~~Ll~rfp~~~l~~~~~~~~~~~~~~~~g~~~lpv~~ 399 (399)
T d1jfba_ 321 FENPDEFNMNRKWPPQDPLGFGFGDHRCIAEHLAKAELTTVFSTLYQKFPDLKVAVPLGKINYTPLNRDVGIVDLPVIF 399 (399)
T ss_dssp SSSTTSCCTTCCCCSSCCCTTCCGGGSCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCEECCTTSCSCEEECEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCCCCEEEC
T ss_conf 7996445868889999886889997368069999999999999999967967899887776467787777871351039
|
| >d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp158a2 species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=0 Score=30094.85 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~p~~~~~~~~~~~~~~~~p~~~~lr~~gPv~~~~~~~g~~~~wvvt~~e~v~~vl~d~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T d1s1fa_ 1 QAVPPVRDWPAVDLPGSDFDPVLTELMREGPVTRISLPNGEGWAWLVTRHDDVRLVTNDPRFGREAVMDRQVTRLAPHFI 80 (399)
T ss_dssp CCSCCEEECCCCCCCTTCCCHHHHHHHHHCSEEEEECSBSBSCEEEECSHHHHHHHHTCTTEESTTTTTTTBCBSSSSCS
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99899899887789999989999999971996898416886588996599999999769764456555555444561001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~Dg~~H~~~Rr~l~~~Fs~~~l~~~~~~i~~~~~~l~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~~~~~ 160 (399)
T d1s1fa_ 81 PARGAVGFLDPPDHTRLRRSVAAAFTARGVERVRERSRGMLDELVDAMLRAGPPADLTEAVLSPFPIAVICELMGVPATD 160 (399)
T ss_dssp SCTTSGGGCCTTHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEHHHHTTTHHHHHHHHHHHTCCGGG
T ss_pred CCCCCHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHEEHHCCCCCHHH
T ss_conf 33452010586778999987484347412678999999999998620234565032024554433430001104883455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~tT~ 240 (399)
T d1s1fa_ 161 RHSMHTWTQLILSSSHGAEVSERAKNEMNAYFSDLIGLRSDSAGEDVTSLLGAAVGRDEITLSEAVGLAVLLQIGGEAVT 240 (399)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHTHHHHHHHHHHHTSCCSCCCSHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 44566677887512232046788888899999999987630223201232001256655507777777888751342222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~l~~~l~~l~~~p~~~~~~~~~~~~~~~~~~e~~r~~p~~~~~~~~R~~~~~~~l~G~~ip~Gt~V~~~~~~~~rdp~~ 320 (399)
T d1s1fa_ 241 NNSGQMFHLLLSRPELAERLRSEPEIRPRAIDELLRWIPHRNAVGLSRIALEDVEIKGVRIRAGDAVYVSYLAANRDPEV 320 (399)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHCGGGHHHHHHHHHHHSCCBSSCCCCEEESSCEEETTEEECTTCEEEECHHHHTTCTTT
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEECCCCEECCCCCCCCCCHHH
T ss_conf 20222122343085155431232013532122211246632223432100002540533533897501233334668110
Q ss_pred ------------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~dP~~F~PeR~~~~~lpFG~G~r~C~G~~lA~~e~~~~l~~Ll~rf~~~~~~~~~~~~~~~~~~~~rg~~~lpv~~~~ 399 (399)
T d1s1fa_ 321 FPDPDRIDFERSPNPHVSFGFGPHYCPGGMLARLESELLVDAVLDRVPGLKLAVAPEDVPFKKGALIRGPEALPVTWHA 399 (399)
T ss_dssp SSSTTSCCTTC--CCCCTTCCSTTCCTTHHHHHHHHHHHHHHHHHHSTTCEESSCGGGSCBCSSCSBCCBSCCEEECCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEECCCCCCCCEEEEEEEEC
T ss_conf 6995444889999997777988617815999999999999999997798788889666525168744287047899849
|
| >d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Trypanosoma sialidase species: Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]
Probab=100.00 E-value=0 Score=30093.04 Aligned_cols=1 Identities=0% Similarity=-1.590 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~syRIPsLv~~~GtlLA~ae~R~~~~~D~~~idiv~rRS~D~GkTWs~~ 80 (399)
T d2ah2a2 1 LAPGSSRVELFKRQSSKVPFEKDGKVTERVVHSFRLPALVNVDGVMVAIADARYETSFDNSLIDTVAKYSVDDGETWETQ 80 (399)
T ss_dssp CCTTCEEEEEECTTTCEEEEEETTEEEEEECSEEEEEEEEEETTEEEEEEEEESSCSCSSSCEEEEEEEESSTTSSCEEE
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECEEEEEECCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCE
T ss_conf 98886434203788765775568988985699991308999899999999179888998720378998532788578762
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~v~~~~~~~~~~~~dP~~v~d~~~i~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~g~tWs~p~~i~ 160 (399)
T d2ah2a2 81 IAIKNSRASSVSRVVDPTVIVKGNKLYVLVGSYNSSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGSPVSLK 160 (399)
T ss_dssp EEECCCCSSTTCEEEEEEEEEETTEEEEEEEEESSCCSCGGGCSSSTTEEEEEEEEEEEEECGGGSCEEEEEECCCEECG
T ss_pred EEEECCCCCCCCCCCCCEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 89724777776666688599849969999997658886221125788876258977998646798366773258832056
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~gi~~~~GrLv~p~~~~~~~~~~~s~~iySdD~G~TW~~g~~~~~~~~~~~~v~~~dG~l 240 (399)
T d2ah2a2 161 EFFPAEMEGMHTNQFLGGAGVAIVASNGNLVYPVQVTNKKKQVFSKIFYSEDEGKTWKFGKGRSAFGCSEPVALEWEGKL 240 (399)
T ss_dssp GGSCSEETTEEEEEEEECSEECEECTTSCEEEEEEEEETTCCEEEEEEEESSTTSSCEECSCCCCTTCEEEEEEEETTEE
T ss_pred CCCCCCCCCCCCCEECCCCCCEEEECCCCEECCEEEECCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCCEECCCCEE
T ss_conf 53465335753100526775303304863731337534887468899995899851683465589875566300358818
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ll~~R~~~g~r~v~~S~DgG~TW~~~~~~~~~v~~~~~~~~~~~~~~~li~~~~~~~~~lLfsnp~~~~~~~~r~~l~l~ 320 (399)
T d2ah2a2 241 IINTRVDYRRRLVYESSDMGNTWLEAVGTLSRVWGPSPKSNQPGSQSSFTAVTIEGMRVMLFTHPLNFKGRWLRDRLNLW 320 (399)
T ss_dssp EEEEECTTSCCCEEEESSTTSSCEECTTTTTTCBCSSTTSCSCCCCCCEEEEEETTEEEEEEEEECCSSCTTCCBCEEEE
T ss_pred EEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEE
T ss_conf 99876278740699974898625433454433437776667874453135741389729999798886454435642899
Q ss_pred ------------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~Sdd~g~~w~~~~~i~~g~saYS~L~~~dg~ig~lYE~~~~~~~~i~f~rlT~el~~ik~v~~~w~~~d~~~~~~~~~~ 399 (399)
T d2ah2a2 321 LTDNQRIYNVGQVSIGDENSAYSSVLYKDDKLYCLHEINSNEVYSLVFARLVGELRIIKSVLQSWKNWDSHLSSICTPA 399 (399)
T ss_dssp EESSSCEEEEEECSCTTCBCCCEEEEEETTEEEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred EECCCCCCCCCCEEECCCCCCCCEEEEECCEEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8579984214722855898542576758998999998589970059983687899999999998987547874478899
|
| >d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=30092.65 Aligned_cols=1 Identities=0% Similarity=0.437 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~G~As~~~gttGG~~a~~~~v~~v~t~~el~~~l~~~~~~~P~vI~~~gti~~~~~~~~~~~~~~~~~~ 80 (399)
T d1bn8a_ 1 ADLGHQTLGSNDGWGAYSTGTTGGSKASSSNVYTVSNRNQLVSALGKETNTTPKIIYIKGTIDMNVDDNLKPLGLNDYKD 80 (399)
T ss_dssp CCGGGCCCCTTSSGGGSTTCCCTTTTCCGGGEEEECSHHHHHHHHCCTTCCSCEEEEECSEEESSBCTTCCBCCHHHHCC
T ss_pred CCCHHHCCCCCCCEEECCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCC
T ss_conf 95211113688750504898677887787746830889999999862369986699986679425665654444454334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~SNkTIiG~G~~~~i~g~gl~i~a~NVIirnl~i~ 160 (399)
T d1bn8a_ 81 PEYDLDKYLKAYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKSDNVIIRNIEFQ 160 (399)
T ss_dssp TTCCHHHHHHHTCHHHHCSSCCCSHHHHHHHHHHHHHHHHHEEEECSSEEEEECTTCCEEESCEEEECSEEEEEESCEEE
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCEEECCEEEEECCEEEEECEEEE
T ss_conf 33353322234574342034666654322111021435522785279864984589708954579983746999592997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~s~~VWIDH~t~s~~~~e~~~~~~~~~~~~~~~Dg~lDi~~gs~~VTvS~n 240 (399)
T d1bn8a_ 161 DAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 240 (399)
T ss_dssp CCCCSSCEEETTSSSSCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGCCEETTEECCCCCCSEEEETTCEEEEEESC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECC
T ss_conf 17466666655666556767778658986686589988660267754444544456653333451653146404995774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~f~~h~k~~L~G~~d~~~~d~g~~~vT~hhN~f~~~~~R~Prvr~g~vHv~NNy~~n~~~~~~~~~~ya~~~~~~a~il~ 320 (399)
T d1bn8a_ 241 YYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYA 320 (399)
T ss_dssp EEEEEEECCEECCCTTCGGGTTCCCEEEESCEEEEEEECSSEESSCEEEEESCEEECCTTCSSSCCCCSEEECTTCEEEE
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCEEECCCCCCEEEE
T ss_conf 15687524675678876434687359999327247645686303557888851767787655410002212456746999
Q ss_pred ------------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 EgN~F~~~~~~~~~~~~~~~~g~~~~~~gn~~~g~~~~~~~~~~~~~~~~~~p~y~y~~~~A~~v~~~V~a~AGAGkl~ 399 (399)
T d1bn8a_ 321 QNNVIDVPGLSAAKTISVFSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHGSIDASANVKSNVINQAGAGKLN 399 (399)
T ss_dssp ESCEEECTTCCSGGGEEECTTCCBCEEESCEETTEECCHHHHTTCBSCCSCCCCSCCCCCCHHHHHHHHHHHCSTTSCC
T ss_pred EEEEEECCCCCCCCEECCCCCCCEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 8148878888655230102688459607847648453676676746565323456533479999998765258976159
|
| >d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=30025.91 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~kltl~d~~l~~k~Vl~R~D~NvPi~~g~i~d~~RI~~~~pTI~~l~~~~akvil~SH~GRP~g~~~~~~Sl~~~~~~L~ 80 (398)
T d1vpea_ 1 EKMTIRDVDLKGKRVIMRVDFNVPVKDGVVQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLS 80 (398)
T ss_dssp CBCBGGGSCCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 98762004847998999931477533995887289999999999999789989998378999998887668799999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~l~~~v~f~~d~~~~~~~~~~~~l~~g~i~lLEN~Rf~~~E~~n~~~f~k~La~l~DiyVnDAFg~sHR~haS~~gi~~ 160 (398)
T d1vpea_ 81 ELLGKEVKFVPAVVGDEVKKAVEELKEGEVLLLENTRFHPGETKNDPELAKFWASLADIHVNDAFGTAHRAHASNVGIAQ 160 (398)
T ss_dssp HHHTSCCEEESCSSSHHHHHHHHTCCTTEEEEECCGGGSTHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGGG
T ss_pred HHHCCEEEEEECCCCHHHHHHHHCCCCCCEEEEHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCCCEECHHH
T ss_conf 63164079850368658899861578876897244442432333247799998605560342543566515875011345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~lps~aG~l~ekEi~~L~k~l~~~~~P~~aIlGGaKisdKi~~i~~L~~k~D~iiigG~~antfL~a~G~~iG~sl~e~~ 240 (398)
T d1vpea_ 161 FIPSVAGFLMEKEIKFLSKVTYNPEKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEED 240 (398)
T ss_dssp TSCEEECHHHHHHHHHHHHHHHCCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTTHHHHHHHTSCCCTTSCCCGG
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 46101147778789876422101467517996157635079999988875022232423789999974997788753412
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~i~~~a~~~~~~i~lP~d~~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGP~G 320 (398)
T d1vpea_ 241 KIDLAKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMG 320 (398)
T ss_dssp GHHHHHHHHHHHHHTTCEEECCSEEEEESSCSTTCCCEEEETTTCCCTTCEEEEECHHHHHHHHHHHTTCSEEEEESCSS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCCCCCCEEECCCCCCCCCCEEECCCCCHHHHHHHHHCCCCEEEEECCCC
T ss_conf 56789999987665288511001012110003566520213124798765321366500899998745576799974612
Q ss_pred -----------------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~fE~~~F~~GT~~l~~~ia~~t~~~~~sIiGGGdT~aai~~~g~~~~f~hvSTGGGA~Le~L~G~~LPgi~aL~~~~a 398 (398)
T d1vpea_ 321 VFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASMRIKKA 398 (398)
T ss_dssp CTTSGGGCHHHHHHHHHHHHHHHTTCEEEEESHHHHHHHHHTTCGGGSSEEESCHHHHHHHHTSSCCHHHHTSCBCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf 011662417999999999987238998999178999999972986796089677899999987999718999863549
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=100.00 E-value=0 Score=30025.84 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 m~~~~~~~~~~T~avH~G~~~~~~~~~~av~~PI~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LE 80 (398)
T d1qgna_ 1 MKYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALE 80 (398)
T ss_dssp -CCCTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEECCCCEEECCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHH
T ss_conf 98534579976579968976898888899618830777578089899998743776796443998868999999999982
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 gg~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~t~~v~~E 160 (398)
T d1qgna_ 81 GAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTE 160 (398)
T ss_dssp TCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECC
T ss_conf 99348896486468888876303455432322221011333210343456643222442210233432103563179705
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 spsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~ 240 (398)
T d1qgna_ 161 SPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL 240 (398)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEECCEEECCCCCCCHHHCCCEEEEECHHHCCCCCCEEEHHHCCHHHHHHHHHHH
T ss_conf 74300024321799999886449879961502144557722317989998100015765311100100013343221111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~G~~l~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~ 320 (398)
T d1qgna_ 241 HHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD 320 (398)
T ss_dssp HHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHCCCCCCEEEEEEC
T ss_conf 03677748979999998333477889999889999999999739882005788888993365554325898720466643
Q ss_pred -----------------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 g~~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlEd~eDLi~Dl~~AL~~i 398 (398)
T d1qgna_ 321 GDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI 398 (398)
T ss_dssp SCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHCCCCCEEEECCCCCCCEEECCCHHCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 999999999972885626268788761121750113100899999965989297999761089999999999998429
|
| >d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: NADH-dependent butanol dehydrogenase A (TM0820) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=30021.55 Aligned_cols=1 Identities=100% Similarity=0.603 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~M~~f~f~~p~~i~~G~g~~~~l~~~l~~~g~~rvliVt~~~~~~~~g~~~~l~~~L~~~gi~~~~f~~v~~~pt~~~ 80 (398)
T d1vlja_ 1 HHHMENFVFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSK 80 (398)
T ss_dssp CCCCCCEEECCCCEEEESTTCGGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHH
T ss_pred CCCCCCEEEECCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH
T ss_conf 99888728758986998549999999999965998489998974787731999999999865991999867159989899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 v~~~~~~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~iPTt~gtgse~t~~avi~~~~ 160 (398)
T d1vlja_ 81 VHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISATGTEMNGNAVITNEK 160 (398)
T ss_dssp HHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSSCGGGSSEEEEEETT
T ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEECCCCCCEECCCCCEEEECC
T ss_conf 99876411456676688448863112788889886414556776436644367787335414654432113552132001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~K~~~~~~~~~p~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~~~~~~s~~~a~~~~~~~~~~l~~~~~~~~~ 240 (398)
T d1vlja_ 161 TKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIMKMTERLIEKPDD 240 (398)
T ss_dssp TTEEEEEECGGGSCSEEEECGGGGGGSCHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCEEEECCCCCEEEEEEHHHCCCCCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 25420232012443169985564077740001131266998866531021256434577899988740233664038987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~ar~~l~~a~~~a~~~~~~~~~~~~~g~~H~l~h~l~~~~~v~HG~~~ai~lp~v~~~~~~~~~~~~~~la~~l~~~~~ 320 (398)
T d1vlja_ 241 YEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSALYDIAHGAGLAIVFPAWMKYVYRKNPAQFERFAKKIFGFEG 320 (398)
T ss_dssp HHHHHHHHHHHHHHTSSTTTTTSCSCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHGGGSHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCC
T ss_conf 99987667789988888876530576402111112113455877022024016789999987574689999999738899
Q ss_pred -----------------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~e~~~~~~~~l~~~~~~lglP~~L~elGi~~~~i~~ia~~a~~~~~~~~npr~~~~~~~~~l~~e~i~~Il~~A~~ 398 (398)
T d1vlja_ 321 EGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAAK 398 (398)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCSTGGGTCCGGGHHHHHHHHHHHHHHTTGGGTCCSCSSSCCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 819999999999999999859999989939999999999999996766427987676213334899999999999659
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=100.00 E-value=0 Score=29948.89 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~d~k~~~f~T~~ih~G~~~~~~~g~v~pPI~~sST~~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEgg~~ 80 (397)
T d1y4ia1 1 SDCRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEA 80 (397)
T ss_dssp CCGGGSCHHHHHHHTTCCCCTTTCCSSCCCCCCSCCCCSSHHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHTCSE
T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99888981100376798888789992188028888650888999876347768966658988789999999999849962
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~~~~~~i~~~Tklv~~Esp~NP 160 (397)
T d1y4ia1 81 GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPETKVVYIETPANP 160 (397)
T ss_dssp EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTT
T ss_pred CEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCCCCCCEEEECCCCCCHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 11106778888887763168998654301012331035431367785575414899989999865877738980487522
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~ 240 (397)
T d1y4ia1 161 TLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDI 240 (397)
T ss_dssp TCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHT
T ss_pred CEEECCCHHHHHHHHCCCCEEEECCCCCCCCCCCCHHCCCCEEEEEHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 11003307899886047852870275227154763202897899851351078741465215787889999999999967
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~G~~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~ 320 (397)
T d1y4ia1 241 TGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL 320 (397)
T ss_dssp TCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHH
T ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCH
T ss_conf 49858989999997471769999999999999999999748996767488878996522223446778759999956999
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGlEd~~DLi~Dl~~AL~~a~~ 397 (397)
T d1y4ia1 321 EAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKATF 397 (397)
T ss_dssp HHHHHHHHTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 99999997289362305637432032276312654589999997598929799976119999999999999987219
|
| >d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Myo-inositol 1-phosphate synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=0 Score=29947.90 Aligned_cols=1 Identities=100% Similarity=0.703 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~v~s~~v~y~~~~i~~~y~y~~t~v~~~~~~~~v~p~~~~~~f~t~~~vpklGVmLVG~GGnngTT~~aGv~Anr~g 80 (397)
T d1vkoa1 1 KRLIVESPNVKLEDGVLESRFTYRKNHFEHRADGLHVTPKEHDYSFKTVLKPRKTGLLLVGLGGNNGSTAVGSIFANQYA 80 (397)
T ss_dssp CCCCCCCTTEEEETTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECSCCCEEEEEETTTSHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCEEECCCEEEEEEEECCEEEEEECCCEEEEEEEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 94488399738737558999886104999817935998767778998416688258998438840888999999998758
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 L~w~tk~G~~~an~~GSltq~stirlG~~~~~~~~~~~P~kd~lPl~~p~DiVfGGWDI~~~nL~eAa~rA~VLd~~ll~ 160 (397)
T d1vkoa1 81 MTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIFVPFKDIVPILSPNDLIISGWDISDSNLYEAMGRAKVFEPELQE 160 (397)
T ss_dssp CEEEETTEEEECCCTTCHHHHCEEEEEEETTTTEEEEEEGGGTSCCCCGGGEEEEEECSSCCCTTHHHHHHTCSCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCHHHHH
T ss_conf 97546677405886351443033575135789873356376517889821168944469999889999875999989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~l~~~L~~i~P~psv~~pdfia~nq~~ra~nv~~g~~k~e~ve~Ir~DIr~Fk~~~~ldrVVVlwtAsTEr~~~~~~~v~ 240 (397)
T d1vkoa1 161 KLRPFMEPIVPLPSIYYPDFIASNQGDRANNVIPGDNKLEHLEHIRADIRKFKQEHELECVIVLWTANTERYTDVRQGLN 240 (397)
T ss_dssp HHHHHHTTCCCBCBCCCGGGSCGGGGGGCCSBCCSSCHHHHHHHHHHHHHHHHHHHTCSEEEEEECSCCCCCCCCCTTTT
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 99999860865542107277775135200151358889999999999999999974997699998158777777761200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~t~e~l~~ai~~n~~eIsPS~lYA~AAi~eG~pyiNgsPq~t~vPal~eLA~~~~v~iaG~DfKTLLaspliLDl~ll~e 320 (397)
T d1vkoa1 241 ATADEIMESIRVNEDEVSPSNIFAVASILEGAHYINGSPQNTLVPGLIELAERHKVFVGGDDFKSLLASPLIYDLAILTE 320 (397)
T ss_dssp SSHHHHHHHHHTTCSSCCHHHHHHHHHHHTTCEEEECSSSCCCCHHHHHHHHHHTCCEECSCBCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 16999999986699878859999999997599623699755666459999986199665257898755188886999996
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------------------~ 1082 (1223)
|
T Consensus 321 l~~Ri~~k~~~~~~~~~~Vls~LS~~~KaPl~~~g~~~vn~l~kQr~~l~N~lR~~~Gl~p~~~m~lEy~~~lp~~k 397 (397)
T d1vkoa1 321 LASRVSYKVDDEYKPFHSVLSILSLLLKAPVVPPGTPISNAFMRQFSTLTKLVTALAGFPSDTDMQIEFFTQLPAAK 397 (397)
T ss_dssp HHTTEEEESSSSEECCCSBCGGGGGGBSSCCCSTTSCCCCCHHHHHHHHHHHHHHHHTCCCCTTSCGGGTSCCCCCC
T ss_pred HHHEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCC
T ss_conf 64178862254004752077776665268888999866028899999999999998299977754303310055579
|
| >d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=29947.65 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~r~ttfGESHG~aig~vIdG~PaG~~id~~~i~~~L~RRrpG~~~~~t~R~E~D~veilSGv~~g~TtG~PI~~~I 80 (397)
T d1q1la_ 1 SLRYLRFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRRRQRGYGRGGRMKIEKDTAEILSGVRFGKTLGSPIALFI 80 (397)
T ss_dssp CCSSCEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHHHTTCC------CCSCCEEEEESEETTEECSSCEEEEE
T ss_pred CCCEEEEECCCCCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECEECCEECCCCEEEEE
T ss_conf 96569996034578984489980508488848999999985689899999866799984799145158980678559999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~N~D~~~~~y~~~~~~~~~~~~~~~~~pRPGHAD~~~~~KYg~~d~r~gggRsSaReTa~rVaAGaIAk~~L~~~gI~v~ 160 (397)
T d1q1la_ 81 RNRDWENWKEKMAIEGEPSPSVVPFTRPRPGHADLSGGIKYNQRDLRNILERASARETAARVAVGAVCKKFLSEFGIKIG 160 (397)
T ss_dssp ECSCC-------------------------------CTTTTTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred ECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 87876654543322356205554440488887536778874576666766514788999999999999999998498788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 s~v~~IG~i~~~~~~d~~~~~~~~~~~~~~~~~~~s~vrc~d~~~~~~m~~~I~~~r~~gDSvGG~ve~~~~gvP~GLGe 240 (397)
T d1q1la_ 161 SFVVSIGQKEVEELKDKSYFANPEKLLSYHEKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFALNVPPGLGS 240 (397)
T ss_dssp EEEEEETTEECGGGSSGGGGGCHHHHHHHHHHHTTSTTCCSCGGGHHHHHHHHHHHHTTTCCBCEEEEEEEESCCTTCSC
T ss_pred EEEEEECCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC
T ss_conf 89999866752434555445780233556887650750357656999999999999856886440699999658887667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 pv~~ddkLda~LA~AlmSIpAvKgvEfG~Gf~~a~~~GSe~nD~~~~~~~~~~~~~tN~aGGilGGISnG~pI~~rva~K 320 (397)
T d1q1la_ 241 HIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKGYFRHSNNLGGTEGGITNGMPIVVRVAMK 320 (397)
T ss_dssp SSSGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTCCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 73444442489999875040144301265166776630235565313478873355667764245765886089999978
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 P~sSI~~~q~Tvd~~~~e~~~~~~gRhDpcivpra~~VvEAm~alvlaD~~L~k~g~d~~~~~~~~~~~y~~~~~~~ 397 (397)
T d1q1la_ 321 PIPTLKNPLRSVDIETKEEMKAGKERTDIVAVPAASVVGEAMLAIVLADALLEKLGGDFMEEVKKRFEDYVNHVKSF 397 (397)
T ss_dssp CCCC------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCSBHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 86446775636237898777502799898578763389999999999999999857984999999999999997529
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29942.20 Aligned_cols=1 Identities=0% Similarity=-1.624 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~~~~~~dpi~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia 80 (397)
T d3tata_ 1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIA 80 (397)
T ss_dssp CCCCCCCCCCCTTTTHHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 96557778999488999997268998948850787738889988868999999999717666787898555899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~ 160 (397)
T d3tata_ 81 PLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRF 160 (397)
T ss_dssp HHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCH
T ss_pred HHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHCCCEEEEEECCHHHCCCCCH
T ss_conf 99852259767767689845760377888988776533799833662667666279999869979997465142256420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i 240 (397)
T d3tata_ 161 NDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPAL 240 (397)
T ss_dssp HHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCE
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCEECCHHHHHHHHHHHHHCCEEEEEEHHHHHHCCCCCCCCHHHHHHHHCCCCEE
T ss_conf 77899864066552899826899997841788999999999853694699415531001697533114554442277359
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (397)
T d3tata_ 241 VSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRIL 320 (397)
T ss_dssp ECBCCHHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98447665333576512110011678999988888887752256666078999999860788889999988889999999
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~e~~~~L~~e~~V~l~~g~Ri~~a~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 321 AMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp HHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCCHHHHHHHTTTTCEECCSSSCCBTTSCCTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 99999999999848998648876898417841919999999999599995798879852599889999999999869
|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29940.25 Aligned_cols=1 Identities=0% Similarity=-1.025 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~p~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~ 80 (397)
T d1vjva_ 1 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPV 80 (397)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 98789988888884079999999998089999999817741011346654322589999999999999985898714879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (397)
T d1vjva_ 81 VLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGDKFSEDFRIQFKTTIKDTANDNDITVKENESDSKLQ 160 (397)
T ss_dssp HHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTHHHHTTTCEEEEEEEEETTEEEEEEEECCCEESCEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEEEECCCCCCCCEECCEEEEEEE
T ss_conf 99999999704322465566634126689999999999987733213554155120058862336644213540211233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~l~i~l~R~~~~~~~~~~~k~~~~~~~~~~ld~~ 240 (397)
T d1vjva_ 161 CHISGTTNFMRNGLLEGLNEKIEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVA 240 (397)
T ss_dssp ECCCTTCCBHHHHHHHHHEEC---------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECG
T ss_pred EEECCCEEECHHHHHHHHHHHHCCCCCCCCCCCEEEEECEEECCCCEEEEEEEEEEECCCCCCCCCCCCEEECCCEEECC
T ss_conf 46326412202778764366540534555787523220423238952377766654214556110327625267077525
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (397)
T d1vjva_ 241 DMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEK 320 (397)
T ss_dssp GGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHCCCCHHCCCHHHHCCCCCCCCCCC
T ss_conf 32110233320015676644331111477777640468766532234200011000023100110001000135632123
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~Y~L~aVv~H~G~~~~~GHY~ay~r~~~~~~~W~~~nD~~V~~v~~~~V~~~~~~~~~~~aYlLfY~r~~~ 397 (397)
T d1vjva_ 321 GENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFGL 397 (397)
T ss_dssp TBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETTC
T ss_pred CCCCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCEECCHHHHHHHHCCCCCCEEEEEEEEECCC
T ss_conf 67899888999999996599999682899989999898999989877799889998750899888189999996489
|
| >d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Bacterial glucoamylase C-terminal domain-like domain: Bacterial glucoamylase, C-terminal domain species: Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]
Probab=100.00 E-value=0 Score=29938.03 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~s~~~lk~~~~~~~~GaiiAsptt~~~e~~~~~~~~~Y~y~W~RDaa~~~~al~~~G~~~~a~~~l~~ 80 (397)
T d1lf6a1 1 NNFNGKANSLYYNSMMILKASEDKTNKGAYIASLSIPWGDGQRDDNTGGYHLVWSRDLYHVANAFIAAGDVDSANRSLDY 80 (397)
T ss_dssp CCTTTTCCHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBSBSCCGGGSBCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99873799999999999998047789964897677886655689889997057272599999999985997999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 l~~~~~~~G~~~~~~~~~G~~~~~~~q~D~~g~~i~a~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~lWEe~~g~~~~t 160 (397)
T d1lf6a1 81 LAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYDLYDSLVKPLADFIIKIGPKTGQERWEEIGGYSPAT 160 (397)
T ss_dssp HHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGGGTTTTHHHHHHHHHHHCSSBSSCTTSSCCBBCHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
T ss_conf 99995325877887886798645677776699999999999753406899999999999838887655454457864203
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~aL~~~a~la~~~g~~~~a~~~~~~A~~i~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 240 (397)
T d1lf6a1 161 MAAEVAGLTCAAYIAEQNKDYESAQKYQEKADNWQKLIDNLTYTENGPLGNGQYYIRIAGLSDPDADFMINIANGGGVYD 240 (397)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHEESSCSSTTSCEECSCBSSSCTTSCCEEEETTTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 67799999999999886088157999999999999999983428356610243200146666753110001245434456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~lDasll~~~~~g~~~~~d~~~~~tl~~i~~~l~~~~g~~~~~~RY~~D~y~~~~~~~~~~~~~~g~pW~i~T~~~a 320 (397)
T d1lf6a1 241 QKEIVDPSFLELVRLGVKSADDPKILNTLKVVDSTIKVDTPKGPSWYRYNHDGYGEPSKTELYHGAGKGRLWPLLTGERG 320 (397)
T ss_dssp GGGCCCGGGGHHHHTTSSCTTCHHHHHHHHHHHHHSEEEETTEEEECSSTTCCCSCSBTTBCCSSSSCCCBBHHHHHHHH
T ss_pred CCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 67776778763110378788878999999999987166777666654454555343577677667868754999999999
Q ss_pred ----------------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~g~~A~~~l~~~~~~~~~~G~l~E~~d~~tG~~~g~a~plaWS~A~~i~~~~~l~~~~~~~~~~~~~~~~~~ 397 (397)
T d1lf6a1 321 MYEIAAGKDATPYVKAMEKFANEGGIISEQVWEDTGLPTDSASPLNWAHAEYVILFASNIEHKVLDMPDIVYKRYVA 397 (397)
T ss_dssp HHHHHTTCCCHHHHHHHHHHSCTTSCCCSCBCTTTCCBCSSCSSCHHHHHHHHHHHHHHHHTSCTTSCHHHHHHHTC
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC
T ss_conf 99997117999999999976688886350046989984899954788999999999998649976666788887309
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=100.00 E-value=0 Score=29868.41 Aligned_cols=1 Identities=0% Similarity=-1.122 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~l~~l~~~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~ 80 (396)
T d2bwna1 1 DYNLALDKAIQKLHDEGRYRTFIDIEREKGAFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSG 80 (396)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCCEEEECTTSTTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCC
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 96799999999999859986342012246788740474027998289998852102768999999999999999589864
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~Sr~~~G~~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~H 160 (396)
T d2bwna1 81 GTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRH 160 (396)
T ss_dssp SBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCCHHHHCCCCCCEEEEC
T ss_conf 55244587449999999999974998515540113778889998760367984310534223000143046667337632
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 nd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di 240 (396)
T d2bwna1 161 NDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDI 240 (396)
T ss_dssp TCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSE
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCEEEECCCEEEEEECCCCCCCHHHCCCCEEEEE
T ss_conf 36877666776405667616999752367644466176899865424066501210110221666662233187312124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~gTlsKa~g~~Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~ 320 (396)
T d2bwna1 241 FNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL 320 (396)
T ss_dssp EEEESSSTTCSCCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 53124655533554353268999998751213453136757778899999997631207899999999999999889866
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 g~~~~~~~spIvpv~ig~~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~iw 396 (396)
T d2bwna1 321 GMPIIDHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLW 396 (396)
T ss_dssp TCCBCCCSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9986899999799996999999999999999689899987899689997269998576699999999999999859
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29862.95 Aligned_cols=1 Identities=0% Similarity=-0.924 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~iYe~~~~~f~~~~~~~~~g~~~gi~~klidyl~~LGv~~iwl~Pi~~~~~~~~hGY~~~d~~ 80 (396)
T d1m7xa3 1 VVQTEERKKANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLY 80 (396)
T ss_dssp CCCCHHHHHHHSTTSCCEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEE
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 96641024578889986799772571477899998879999999899999982998899698887899899896867587
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~vdp~~Gt~~d~~~LV~~aH~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (396)
T d1m7xa3 81 APTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFL 160 (396)
T ss_dssp EECGGGSCHHHHHHHHHHHHHTTCEEEEEECTTSCCCSTTSSTTGGGSCSSBCC-----------CCCBCTTSHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 71824289899999999985420333201143446786555554567863235678778778877754467772358999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~gvDG~R~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 240 (396)
T d1m7xa3 161 VGNALYWIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGV 240 (396)
T ss_dssp HHHHHHHHHHSCCCEEEECCSHHHHCC--------------CTTCCHHHHHHHHHHHHHHHHSSTTCEEEECCSSCCTTT
T ss_pred HHHHHHHHHHHCCCCEEEECHHHHCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 99999889985786323311423122010011111111103566550289999999999863479946997521787532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (396)
T d1m7xa3 241 SRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQK 320 (396)
T ss_dssp TBCTTTTBSCCSEEECHHHHHHHHHHHHSCGGGGGGCTHHHHGGGTTTTTSCEEEEECGGGSSTTSCCHHHHSCSSHHHH
T ss_pred CCCCCCCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 22000354320334211022344430000013444422223100111055521222344322457774223688877899
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~la~a~llt~pG~P~IYyGdEiG~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~L~~lR~~~paL~~~~~~ 396 (396)
T d1m7xa3 321 FANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFD 396 (396)
T ss_dssp HHHHHHHHHHHHHSSSEEEEETTTTTTCSSCCCTTSCCCGGGGCSSCCHHHHHHHHHHHHHHHHTTCGGGTSCTTS
T ss_pred HHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf 9999999999998178547056512487899998887782111476534279999999999999739876460789
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29864.69 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~f~~~~~~p~d~i~~~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~ 80 (396)
T d2q7wa1 1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQE 80 (396)
T ss_dssp -CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 96445547998599999998466899968830787658889989988999999999618988988997677999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~ 160 (396)
T d2q7wa1 81 LLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD 160 (396)
T ss_dssp HHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHH
T ss_pred HHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCC
T ss_conf 99861698666442013213417899999999886315650899816888430599998599067245434456542210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (396)
T d2q7wa1 161 ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV 240 (396)
T ss_dssp HHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEE
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 57778988515838999568849949336889987788877048819998615354346986674286654562344211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (396)
T d2q7wa1 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQR 320 (396)
T ss_dssp EEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 33564434445777442446606899999865556665504445787899999999853913678999999999999999
Q ss_pred ---------------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~~e~~~~L~~e~gV~~~~g~Ri~~a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 321 MRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999828988741564897179951879999999999689997799879952898788999999999869
|
| >d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Phase 1 flagellin superfamily: Phase 1 flagellin family: Phase 1 flagellin domain: Phase 1 flagellin species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=29800.07 Aligned_cols=1 Identities=0% Similarity=1.035 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~i~gl~qa~~N~~d~~s~lqtae~al~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ia~~T~fng~~ 80 (395)
T d1io1a_ 1 NIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVK 80 (395)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEECCCC
T ss_conf 97138899998999999999999999999999999999999850578999999999999999999999999737028802
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 Ll~Gs~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (395)
T d1io1a_ 81 VLAQDNTLTIQVGANDGETIDIDLKQINSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQK 160 (395)
T ss_dssp TTTSCEEEEEECSSSTTCEEEEEECCCSTTTTTCTTCCCCCCCEEEEEECCCCSEEEEEEECBGGGSTTTCGGGCSSEEE
T ss_pred CCCCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 23556725897247875058997123310001121100222322333211122222211013443222112232232100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (395)
T d1io1a_ 161 IDGDLKFDDTTGKYYAKVTVTGGTGKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQVANADLTEAKAAL 240 (395)
T ss_dssp ECSSEEEETTTTEEEEEEEEETCSSCCEEEEEEECTTTCBEEESTTCCSCCTTSSCTTCCEEESEEEEEGGGCHHHHHHH
T ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 01221111101110000011222221000110000133210011222111223444333210001000000120011100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (395)
T d1io1a_ 241 TAAGVTGTASVVKMSYTDNNGKTIDGGLAVKVGDDYYSATQNKDGSISINTTKYTADDGTSKTALNKLGGADGKTEVVSI 320 (395)
T ss_dssp HHTTCCSCEEEEEEEEECTTSCEEEEEEEEEETTEEEEEEECTTSCEEECBCCBBCSSSSCBCCBEEEESTTSCEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 00012233222221113421100145532112221001101222332123322222200233102222234341035412
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~i~v~t~~~A~~Al~~iD~Ai~~v~~~Ra~lGA~qNRle~ti~NL~~~~~N~~aar 395 (395)
T d1io1a_ 321 GGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDAALAQVDTLRSDLAAVQNRFNSAITNLGNTVNNLTSAR 395 (395)
T ss_dssp TTEEEEHHHHTTCBTTTSCCCCCCCCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 551021123455332222102466488899999999999999999998755698868999998999999998519
|
| >d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29794.29 Aligned_cols=1 Identities=100% Similarity=0.703 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~ld~~g~~~~~~~~~~ls~e~l~~~Yr~M~~~R~~e~~~~~l~~~G~i~~ 80 (395)
T d2bfda1 1 KPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISF 80 (395)
T ss_dssp CCCCTTCCCCCCSSCCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99899987756655455787667888806778999999884236998999999999999999999999999996897012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~GqEA~~vg~~~al~~~D~~~~~yR~h~~~la~G~~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg 160 (395)
T d2bfda1 81 YMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLA 160 (395)
T ss_dssp CCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTT
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 50898869999999997697780134445367244431789999998740035764456654443323346311344334
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~yaist~~~~~~~~~~i~~ra~~ 240 (395)
T d2bfda1 161 TQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPG 240 (395)
T ss_dssp THHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGG
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHCCHHHHHHHHC
T ss_conf 55107888888765037654443114788754113889999986237743799986133422200210011168876310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~gi~~~~vDG~Dv~aV~~a~~~A~~~~R~g~gP~lIE~~TyR~~~Hs~~DD~~~YR~~~Ei~~w~k~DdPi~~~~~~Li~ 320 (395)
T d2bfda1 241 YGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLS 320 (395)
T ss_dssp GTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------CCHHHHHHHHHTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 35541688337389888888876433312687537887663588887767732466889999988549899999999998
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~g~~s~ee~~~i~~e~~~eV~~A~~~A~~~p~P~~~~l~~~VYae~p~~l~eq~~~~~~~~~~~~e~~~~~~~~~ 395 (395)
T d2bfda1 321 QGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK 395 (395)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSCCHHHHHHHHHHHHHHHHHGGGSCGGGBCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCC
T ss_conf 799999999999999999999999999858997989998450159997799999999999996725388455349
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=100.00 E-value=0 Score=29790.17 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~ 80 (395)
T d2py6a1 1 DPLAMNDSFLAAADALAVDPMFGIPANVREVIARRGNATRLVILGTKGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYY 80 (395)
T ss_dssp CGGGHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHGGGCEEEEECSSSTHHHHHSCSSSCSSEEEEEECTTTTTSCCEET
T ss_pred CCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHCCCEEC
T ss_conf 94116778887788754472320868899999850897528997686458999999987794699996684232286533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 g~pv~s~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (395)
T d2py6a1 81 GLPIISTDRFTELATHDRDLVALNTCRYDGPKRFFDQICRTHGIPHLNFEQAVRAFGLQGNVDYRVDDWGADIVRNIPAF 160 (395)
T ss_dssp TEEEECHHHHHHHHHTCTTEEEEECCCSHHHHHHHHHHHHHTTCCEEEHHHHHHHTTCTTSSCGGGSCCHHHHHHTHHHH
T ss_pred CEEEECHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 55751678864344226857999813641122589999876598400157778873774234402444589999869999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~L~D~~S~~~~~~~l~~rl~~d~~~~~~~~~~~~~~YF~~~i~~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~k 240 (395)
T d2py6a1 161 QTLAQRLADDYSVQTLYAVLNFHLTCEPEYYHEVERPYSTLYFRSGLLRFSDSEKMVDCGASIGESLAGLIGVTKGKFER 240 (395)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHCCTHHHHHHCCCGGGTTTSSSSCCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCE
T ss_conf 99998713776599999999998639989985135758776543404676799899997758778899999966899998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 V~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~~alsd~~~~~~f~~~~~~~s~~~~~~~~~~~~~~V~~~tLD~l~~~ 320 (395)
T d2py6a1 241 VWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGENTIRVPFNHEGGHGGFVKPADADHEPADLIDVRPIDDIIDD 320 (395)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECSSCEEEEC--------------------CEEEEECHHHHCSS
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEHHHHCCC
T ss_conf 99993987999999999985622255543999998961661389985179865310135667775189998788995378
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~id~IKIDVEG~E~~VLkGa~~~Lk~~kPiI~IEiyh~~~d~~~i~~~L~~l~~~Y~~~lR~h~~~~~d~vlY~~ 395 (395)
T d2py6a1 321 APTFIKMDIEGSELSALKGARRAISEHKPKLAISAYHRSTDLLDLTNYILSIRPDYQIGLRHHTPDRWDTCLYFY 395 (395)
T ss_dssp CCSEEEECCSSCHHHHHHTTHHHHHHHCCEEEEECCSSTTHHHHHHHHHHHHCTTCCEEEEECSSSSCCEEEEEC
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEC
T ss_conf 998899968998799999789999867987999995257659999999998636974999668987501489859
|
| >d1aora1 a.110.1.1 (A:211-605) Aldehyde ferredoxin oxidoreductase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Aldehyde ferredoxin oxidoreductase, C-terminal domains superfamily: Aldehyde ferredoxin oxidoreductase, C-terminal domains family: Aldehyde ferredoxin oxidoreductase, C-terminal domains domain: Aldehyde ferredoxin oxidoreductase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=29788.54 Aligned_cols=1 Identities=0% Similarity=-2.188 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 vad~~~f~~~~~~~~~~~~~~p~~~~~l~~~GT~~~~~~~~~~g~lP~~Nf~~g~~~~a~~isge~~~~~~~~r~~~C~~ 80 (395)
T d1aora1 1 IADKQKFMLVVREKVNKLRNDPVAGGGLPKYGTAVLVNIINENGLYPVKNFQTGVYPYAYEQSGEAMAAKYLVRNKPCYA 80 (395)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSHHHHTHHHHHCGGGHHHHHHHTTCCCBTTTTBSCCTTGGGGSHHHHHHHTEEEEECCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCCC
T ss_conf 98989999999999999982970415321109299999998769877488888889971542899999986146999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 Cpi~C~~~~~~~~~~~~~gpEYEt~~a~Gs~~Gi~d~~~v~~~n~l~d~~GlDtIs~G~~ia~amE~~e~Gll~~e~~gd 160 (395)
T d1aora1 81 CPIGCGRVNRLPTVGETEGPEYESVWALGANLGINDLASIIEANHMCDELGLDTISTGGTLATAMELYEKGHIKDEELGD 160 (395)
T ss_dssp CSSCCEEEEEETTTEEEECCCHHHHHHHTGGGTCCCHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHTTSSCHHHHTT
T ss_pred CCCCCCCEEEECCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHCCC
T ss_conf 98674834770688753687730110300124899999999999999996813887868999999999779887242066
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~l~wGd~e~~~~li~~IA~r~g~G~~LA~G~~~aae~~G~~~~a~~vkg~e~p~~dpr~~~g~~l~yat~~~G~~H~~ 240 (395)
T d1aora1 161 APPFRWGNTEVLHYYIEKIAKREGFGDKLAEGSYRLAESYGHPELSMTVKKLELPAYDPRGAEGHGLGYATNNRGGCHIK 240 (395)
T ss_dssp SCCCCTTCTHHHHHHHHHHHTTCTTHHHHTTCHHHHHHHTTCGGGCCEETTEECCSCCGGGCHHHHHHHHHCTTSSCSGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHEEECCCCCCHHHH
T ss_conf 77879999999999999998467417888223999999959823546744777443377653132311001577640233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~e~~g~~~~~dp~~~~e~k~~~~~~~q~~~~~~dslg~C~F~~~~~~~~~~~~~~~avTG~~~t~e~l~~~geRi 320 (395)
T d1aora1 241 NYMISPEILGYPYKMDPHDVSDDKIKMLILFQDLTALIDSAGLCLFTTFGLGADDYRDLLNAALGWDFTTEDYLKIGERI 320 (395)
T ss_dssp GCTHHHHTTCSSSCCCTTCCSHHHHHHHHHHHHHHHHHHHHTCCGGGGTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 22244754389765785514379999999999999996013434413667999999999997538899999999999999
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~l~R~fN~r~G~~~~~dD~lP~r~~~ep~~~G~~kg~~~~~e~~l~~YY~~rGWd~~G~Pt~e~L~~LgL~d~~ 395 (395)
T d1aora1 321 WNAERLFNLKAGLDPARDDTLPKRFLEEPMPEGPNKGHTVRLKEMLPRYYKLRGWTEDGKIPKEKLEELGIAEFY 395 (395)
T ss_dssp HHHHHHHHHHHTCCHHHHSCCCHHHHHSCCCSSTTTTCCCCHHHHHHHHHHHHTCCTTSCCCHHHHHHHTCGGGC
T ss_pred HHHHHHHHHHCCCCHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCC
T ss_conf 999999999747983654569887724888878777876789999999999839898898799999976891339
|
| >d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29787.78 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~g~~~p~~~~w~~~~~~~~~~~~~~~~A~~~A~~I~~ll~~~~~~~~~~~~~~~~r~v~~~DIAILvR~~~~~~ 80 (395)
T d1w36b2 1 ALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAA 80 (395)
T ss_dssp TEEEEETTEEECSEEEEECCSSCCCTTHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHH
T ss_pred CCEEEECCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCEEEEEECCHHHH
T ss_conf 95367889768700210389876551309999999999999999971203653004677767788143899983766699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~i~~aL~~~gIP~v~~~~~~~l~~~~ev~~llalL~~l~~p~d~~~l~~~L~sp~~gl~~~~l~~~~~~~~~~~~~~~~~ 160 (395)
T d1w36b2 81 QVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEF 160 (395)
T ss_dssp HHHHHHHTTTCCEEETTCCCBGGGSSHHHHHHHHHHHHTCTTSHHHHHHHHHSGGGTCCHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999998599859935875432569999999999977455647889998708556999999998751267799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 240 (395)
T d1w36b2 161 DGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQ 240 (395)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHSSSHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHSCCCCSTTB
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999998634258999999875499999863671799999998999999998745778899999999986143231233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~daV~ImTIHkSKGLEfpvVflp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Ee~RLlYVA 320 (395)
T d1w36b2 241 QMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVA 320 (395)
T ss_dssp CCCCTTGGGSEEEEETTTTSSCCEEEEEETTTTCCCCCCSCEEECTTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCEEEEECHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10110256508997114530677778997167668886556666555532225766465578898899999997454645
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 lTRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pw~~ 395 (395)
T d1w36b2 321 LTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQV 395 (395)
T ss_dssp HTTEEEEEEEEECCCCCSCSCCSSCCGGGGSHHHHHHTCSSCCCHHHHHHHHHHSCSTTEEEEECCCCCCCCCCC
T ss_pred HHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 734726118997555666788788865778799999707888886779998987457876667789998999879
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=29786.94 Aligned_cols=1 Identities=0% Similarity=1.035 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~s~r~~~~~~~ir~i~~~a~~l~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia 80 (395)
T d1xi9a_ 1 SIRASKRALSVEYAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIV 80 (395)
T ss_dssp CCCCCHHHHTCCC-------CHHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHH
T ss_pred CCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 96300040357478999999999999779970899899999789999799999999999638898899978999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~ 160 (395)
T d1xi9a_ 81 EREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIR 160 (395)
T ss_dssp HHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCHHHHHH
T ss_conf 86432045231212232322220132100121047999899838833331000320597799984332235431278899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~ 240 (395)
T d1xi9a_ 161 KKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYF 240 (395)
T ss_dssp HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTC
T ss_pred HHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCHHCC
T ss_conf 76402650899669989754101179999998555425855774121000132222345032078888899958622142
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 320 (395)
T d1xi9a_ 241 ATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGIST 320 (395)
T ss_dssp CGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred CCHHHCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 54010076685187999999999988864378784799999999986087999999999999999999999986799411
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~p~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~~~l~er 395 (395)
T d1xi9a_ 321 TKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFEKFMKER 395 (395)
T ss_dssp CCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 589855898178888899999999999999699999847332889979799996489999999999999999549
|
| >d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Choline kinase domain: Choline kinase species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=0 Score=29786.86 Aligned_cols=1 Identities=100% Similarity=2.065 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~~~~~~l~v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllR 80 (395)
T d1nw1a_ 1 GMKELLSTMDLDTDANTIPELKERAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLR 80 (395)
T ss_dssp CHHHHHTTCCTTCCGGGCHHHHHHHHHHHHHHHCTHHHHCCGGGEEEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEE
T ss_pred CHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEE
T ss_conf 94445045654566543615899999999986711026899301699991785334348999688775445789817999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 i~g~~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~g~I~efi~g~~l~~~d~~~~~~~~~iA~~La~lH~~~~~~~~~~ 160 (395)
T d1nw1a_ 81 VYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSGGRLEEYIPSRPLSCHEISLAHMSTKIAKRVAKVHQLEVPIWKEP 160 (395)
T ss_dssp EECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETTEEEECCCCEEECCTTGGGSHHHHHHHHHHHHHHTTCCCSSCCSS
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 65996116589999999999975799980899818956999734554883331465555999999999850332236675
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~l~~~~~~lv~CHnDL~~~NiL~~~~~~~~~ 240 (395)
T d1nw1a_ 161 DYLCEALQRWLKQLTGTVDAEHRFDLPEECGVSSVNCLDLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKASSGNI 240 (395)
T ss_dssp CHHHHHHHHHHHHHHHHSCTTCCEECCGGGSCCEECHHHHHHHHHHHHHHHTTCCCCEEEECSCCCGGGEEEEC------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCCCCC
T ss_conf 42888999999765431237776434555302444499999999999987430369846885578856376536433222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lID~EYa~~n~~~fDian~f~E~~~~y~~~~~~~~~~~~~~~ps~e~~~~fi~ 320 (395)
T d1nw1a_ 241 RMPSLSDETQALGNSLSAFNPADPRLVLIDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQMLEFFL 320 (395)
T ss_dssp ------------------------CCEECCCTTCEEEEHHHHHHHHHHHTTEECCCSSTTSCEECGGGSCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 34553100023444322356888827998542367885066599999997055677666532134234939999999999
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~Yl~~~~~~~~~~~~~~~~~l~~~v~~~~~~s~l~W~lW~~iq~~~~~~~fDy~~Y~~~Rl~~y~~~k~~l~~~~ 395 (395)
T d1nw1a_ 321 NYLREQGNTRENELYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSPVGFGFADYGRDRLSLYFKHKQLLKNLA 395 (395)
T ss_dssp HHHHHHTCSCGGGHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHTHHHHHTTC
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999873666510679999999999999998857899999999646448998999999999999999999887119
|
| >d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp121 monooxygenase (P450 Mt2) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=29783.42 Aligned_cols=1 Identities=0% Similarity=-1.521 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~~LR~~~Pv~~~~~~~g~~~wvvt~~~dv~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~ 80 (395)
T d1n40a_ 1 TATVLLEVPFSARGDRIPDAVAELRTREPIRKVRTITGAEAWLVSSYALCTQVLEDRRFSMKETAAAGAPRLNALTVPPE 80 (395)
T ss_dssp -CCCCCBSCCCCCSSSCCHHHHHHHHHCSEEEEECTTSCEEEEECSHHHHHHHHTCTTEESGGGGSTTCCCSSCCSSCGG
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99877789988777677399999995299789874899769997799999999769774768776677654444447817
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~d~~~H~~~R~~~~~~Fsp~~~~~~~~i~~~~~~ll~~l~~~g~~~Dlv~~~a~~l~~~vi~~llG~p~~d~~~~~ 160 (395)
T d1n40a_ 81 VVNNMGNIADAGLRKAVMKAITPKAPGLEQFLRDTANSLLDNLITEGAPADLRNDFADPLATALHCKVLGIPQEDGPKLF 160 (395)
T ss_dssp GGGHHHHHHHTTCHHHHHHHTSSCSTTHHHHHHHHHHHHHHHHHHHCSCEETTTTTHHHHHHHHHHHHHTCCGGGHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76537871579999999987309999988789999999862033356664418888777655457777522345677777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ls~~el~~~~~~l~~AG~eTTa~~ 240 (395)
T d1n40a_ 161 RSLSIAFMSSADPIPAAKINWDRDIEYMAGILENPNITTGLMGELSRLRKDPAYSHVSDELFATIGVTFFGAGVISTGSF 240 (395)
T ss_dssp HTHHHHTBCCSSCCHHHHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHTSGGGTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 65433333200136999999999999878899875103677777666430566665540035678999875200012335
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 l~~~l~~L~~~P~~~~~l~~e~~~~~~~i~E~lRl~~p~~~~~~R~a~~d~~i~G~~ip~G~~V~~~~~~a~rDp~~f~d 320 (395)
T d1n40a_ 241 LTTALISLIQRPQLRNLLHEKPELIPAGVEELLRINLSFADGLPRLATADIQVGDVLVRKGELVLVLLEGANFDPEHFPN 320 (395)
T ss_dssp HHHHHHHHHTCHHHHHHHHHCGGGHHHHHHHHHHTCCCBCSCEEEEESSCEEETTEEECTTCEEEECHHHHHTCTTTSSS
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 67888877629630001110123433323320134554543212210232112234565542022201212456200898
Q ss_pred --------------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 P~~F~p~R~~~~~~l~FG~G~h~C~G~~lA~~e~~~~l~~ll~r~p~~~l~~~~~~~~~~~~~~~r~~~~LpV~~ 395 (395)
T d1n40a_ 321 PGSIELDRPNPTSHLAFGRGQHFCPGSALGRRHAQIGIEALLKKMPGVDLAVPIDQLVWRTRFQRRIPERLPVLW 395 (395)
T ss_dssp TTSCCTTCSSTTCSSTTCCGGGCCTTHHHHHHHHHHHHHHHHHHCTTCEESSCGGGCCBCCSBSBCCBSCCEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEECCCCCCCCCEEEEEEC
T ss_conf 021387899998877779988369149999999999999999967997888885667461686333871216569
|
| >d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=29719.53 Aligned_cols=1 Identities=100% Similarity=-0.095 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 M~~ktl~d~d~~~K~VlvR~D~NvPi~~g~I~d~~RI~~~~pTI~~ll~~~akvvl~SH~GRPkgk~~~~~Sl~~~~~~L 80 (394)
T d1phpa_ 1 MNKKTIRDVDVRGKRVFCRVDFNVPMEQGAITDDTRIRAALPTIRYLIEHGAKVILASHLGRPKGKVVEELRLDAVAKRL 80 (394)
T ss_dssp CCBCBGGGSCCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHH
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99785111376799999994058776099389758999999999999978998999858889999888655569999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~l~~~v~f~~~~~~~~~~~~i~~l~~g~i~lLEN~Rf~~~E~~nd~~fak~La~l~DiyVNDAF~~aHR~haS~~gi~ 160 (394)
T d1phpa_ 81 GELLERPVAKTNEAVGDEVKAAVDRLNEGDVLLLENVRFYPGEEKNDPELAKAFAELADLYVNDAFGAAHRAHASTEGIA 160 (394)
T ss_dssp HHHHTSCCEECSCSSSHHHHHHHHTCCTTCEEECCCGGGSHHHHHTCHHHHHHHHTTCSEEEECCGGGTTSCCTTTTGGG
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCHHHHHHHCCCCCEEEECCHHHHHCCCCCCCCHH
T ss_conf 87406241113443567899999605789788635445354432153889974254488999665136551477511000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~lps~aG~l~ekEi~~L~~~l~~p~rP~~aIiGGaKisdKi~~i~~l~~k~D~i~igG~mantfl~a~G~~iG~sl~e~ 240 (394)
T d1phpa_ 161 HYLPAVAGFLMEKELEVLGKALSNPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEE 240 (394)
T ss_dssp GTSCEEECHHHHHHHHHHHHHHHSCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEECTTHHHHHHHHTTCCCTTSCCCG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 02662001108999999999973899976999706763327999987875357278742287999998599667324331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~a~~i~~~~~~~~~~i~lP~D~v~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGPmG 320 (394)
T d1phpa_ 241 DKIELAKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMG 320 (394)
T ss_dssp GGHHHHHHHHHHHHHHTCEEECCSEEEEESSSSTTSCEEEEEGGGCCTTCEEEEECHHHHHHHHHHHHTCSEEEEESCSS
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHCEEEEECCEE
T ss_conf 14778999998776429865588630432123455662477701214786003567248999999986530589955523
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~fE~~~F~~GT~~l~~~ia~~~~a~sivGGGdT~aai~~~g~~~~~shvSTGGGA~Le~L~G~~LPgi~aL~~k 394 (394)
T d1phpa_ 321 VFEMDAFAHGTKAIAEALAEALDTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALEDK 394 (394)
T ss_dssp CTTSGGGCHHHHHHHHHHHHCTTCEEEECSHHHHHHHHHTTCGGGSSEECSCTHHHHHHHTTCCCHHHHTSCBC
T ss_pred EEECCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCHHHHHHCC
T ss_conf 56346241899999999996589869995779999999749867885796678999999879997358785169
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=100.00 E-value=0 Score=29719.32 Aligned_cols=1 Identities=0% Similarity=0.636 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~T~~vh~g~~~d~~gav~~PI~~sst~~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg~~~a~~~ 80 (394)
T d1e5ea_ 1 ERMTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVAT 80 (394)
T ss_dssp CCCCHHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCHHHHHEECCCCCCCCCCEECCCCCCCCEEECCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99997899646889989999830880488886518889998751688678534598887899999999998298502234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~~~~~~i~~~t~lv~~Etp~NP~l~v 160 (394)
T d1e5ea_ 81 SSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKI 160 (394)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEE
T ss_conf 36228889998740233443344541320036767777630543542147899999997516456589994257763122
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~ 240 (394)
T d1e5ea_ 161 IDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGS 240 (394)
T ss_dssp CCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCC
T ss_pred EHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHCCCCEEEECHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 12444420132456708873376547645784011798899612342078743233334431468999999999973277
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a 320 (394)
T d1e5ea_ 241 VISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGA 320 (394)
T ss_dssp CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHH
T ss_pred CCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHCCCCCCCCEEEEECCCCHHHH
T ss_conf 78867799999601068899999988899999997652884577577756632155530344667872454026989999
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~f~~~l~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~qAl~~l~~ 394 (394)
T d1e5ea_ 321 KKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDALLR 394 (394)
T ss_dssp HHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCEEECCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 99998088061535668766035785102521189999996698939799976218999999999999999639
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29715.99 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~s~e~i~~l~KRRgFv~pS~EIYGGlaG~yDyGPlG~~LK~Ni~~~Ww~~fv~~~e~~~~id~~ii~p~~V~kASGHv 80 (394)
T d1atia2 1 AASSLDELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHE 80 (394)
T ss_dssp CCCCHHHHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHH
T ss_pred CCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCC
T ss_conf 93209999999984577415712226710155768427999999999999987540477777513344898886206787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~F~D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~g~~~~~t 160 (394)
T d1atia2 81 ATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWT 160 (394)
T ss_dssp HHCEEEEEEC--------------------------------------------------------------------CC
T ss_pred CCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88764420267777532022677665565543321134555666889999875476866525876178899889867767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnF~~~l~~~r~KlPFGiAQIGk~FRNEIsPr~~l~R~REF~q~Ei 240 (394)
T d1atia2 161 PPRYFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEI 240 (394)
T ss_dssp CCEEEECBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEE
T ss_pred CCCHHHHHCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 50022100012323345656336777013069999799999971567880112432211466376557756332212026
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 E~Fv~P~~~~~~~~yw~~~~~~f~~~lGi~~~~lrfrqh~~~ElAHYa~~~~DiE~~fp~Gw~El~GiA~RtdyDL~~H~ 320 (394)
T d1atia2 241 EYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHT 320 (394)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEETTEEEEEEEEEECTTHHHHHHC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCCEEEEEEECCCCCEECHHHHCCCHHHHHHHH
T ss_conf 89981785157788899999999998368833336775052355540545278999669985840413143121478776
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 k~~~~~~~~~~~~~~~~s~~~l~~~d~~~~~~~iPhVIEPS~GldR~~la~L~~ay~eee~~~~e~R~vLkl~P 394 (394)
T d1atia2 321 KDQEALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKP 394 (394)
T ss_dssp SSTTTTTCCSCCCCCSCCCSCCCEECSSSCCEECCEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCG
T ss_pred HHCCCCCHHHHHHCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 42033202344312777663467880678907850178758882189999999876434227997259983599
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=100.00 E-value=0 Score=29714.72 Aligned_cols=1 Identities=0% Similarity=-1.521 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~p~~~~~~~~pf~i~~~~~~~~~l~~~l~~~r~~~~~~~~~~~~~~~g~~~~~~~~l~~~w~~~~dw~~~e~~ln 80 (394)
T d1qo7a_ 1 KAFAKFPSSASISPNPFTVSIPDEQLDDLKTLVRLSKIAPPTYESLQADGRFGITSEWLTTMREKWLSEFDWRPFEARLN 80 (394)
T ss_dssp CTTCCCCTTCCSCCCBCCCCCCHHHHHHHHHHHHHCCCCCCCTGGGCTTCTTSSCHHHHHHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99788999897787364635899999999999984478997445677753459889999999998634389899999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~f~~~i~G~~iHf~h~~~~~~~~~pLlLlHG~P~s~~~w~~vi~~La~~g~~~~~~f~VIaPDLpG~G~S~~P~~~~ 160 (394)
T d1qo7a_ 81 SFPQFTTEIEGLTIHFAALFSEREDAVPIALLHGWPGSFVEFYPILQLFREEYTPETLPFHLVVPSLPGYTFSSGPPLDK 160 (394)
T ss_dssp TSCEEEEEETTEEEEEEEECCSCTTCEEEEEECCSSCCGGGGHHHHHHHHHHCCTTTCCEEEEEECCTTSTTSCCCCSSS
T ss_pred CCCCEEEEECCEEEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 68975999879888999972258998779993665411899999887641135776550444345424347889998777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~y~~~~~a~~~~~l~~~lg~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T d1qo7a_ 161 DFGLMDNARVVDQLMKDLGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLCAMRAPPEGPSIESLSAAEKEGIARME 240 (394)
T ss_dssp CCCHHHHHHHHHHHHHHTTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCCSCSSSCCGGGSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 65788999999998764047624899840765178999887512521015764034322344321000135677888777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~ 320 (394)
T d1qo7a_ 241 KFMTDGLAYAMEHSTRPSTIGHVLSSSPIALLAWIGEKYLQWVDKPLPSETILEMVSLYWLTESFPRAIHTYRETTPTAS 320 (394)
T ss_dssp HHHHHSCHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHTTCHHHHGGGHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 77775555555430125555432024520046677787642244568879999999987500132056799999842235
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~i~vPtlv~~g~~D~~~~p~~~~~~~~~~~~~~~~~~~GHf~~~E~Pe~~a~~I~~Fl~~v~ 394 (394)
T d1qo7a_ 321 APNGATMLQKELYIHKPFGFSFFPKDLCPVPRSWIATTGNLVFFRDHAEGGHFAALERPRELKTDLTAFVEQVW 394 (394)
T ss_dssp ------CTTTTTCEEEEEEEEECTBSSSCCCHHHHGGGEEEEEEEECSSCBSCHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHCHHHHHHHHHHHHHHHC
T ss_conf 66222321237840687589980888532589999864684699985994781478699999999999999759
|
| >d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Cobalamin-independent methionine synthase domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=29713.53 Aligned_cols=1 Identities=0% Similarity=0.437 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~lG~PRig~~RELK~A~E~yw~G~is~~eL~~~~~~~~~~~~~~Q~~aGid~I~~GeFs~yD~vLD~~~~~g~iP~R 80 (394)
T d1u1ha1 1 ASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPPR 80 (394)
T ss_dssp CBBCSCCCCSCTTCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTTCSBCEESCCCSSCHHHHHHHHTTCCCGG
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 98767589889761899999999779999999999999999999999998599961559840258899999981996534
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 f~~~~~~~~ld~yFa~arg~~~~~a~emtkwfdtnyhy~vPe~~~~~~~~l~~~~~~~~~~ea~~~g~~~Kpvl~GP~T~ 160 (394)
T d1u1ha1 81 YGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSY 160 (394)
T ss_dssp GCCCSSSCCHHHHHHHHHCBTTBCCCCEEECTTSSCEEECCEECTTCCCCCCCCHHHHHHHHHHHTTCCCEEEEECHHHH
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 44445666288887887258764444554345789774577407886345540168999998763487646245778999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 l~l~k~~~~~~~~~~~~~ll~~L~~aY~~~l~~L~~aG~~~VQiDEP~L~~dl~~~~~~~~~~ay~~l~~~~~~~~i~l~ 240 (394)
T d1u1ha1 161 LLLSKAAKGVDKSFELLSLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLVE 240 (394)
T ss_dssp HHTCEECTTCCTTCCGGGGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHHHHHHHHHHHHHHTTTTTTSEEEEE
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 97753247876544799999999999999999987665988986062021369999999999999999864489974378
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 tyfg~~~~~~~~~l~~~~~Vd~l~lD~~~~~~~l~~~~~~~p~~k~L~~GVVdgrniw~ed~e~v~~~i~~~~~~v~~er 320 (394)
T d1u1ha1 241 TYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKDK 320 (394)
T ss_dssp CCSSCCCHHHHHHHTTCTTCCEEEEETTTCTTHHHHHHHCCCTTCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHSCSSC
T ss_pred ECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 60488763568888636798735788523851148898758755689754681478886999999999999997379200
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 l~lspsCsLlh~P~~~~~e~~l~~~~~~~lafa~~k~~e~~~l~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~n 394 (394)
T d1u1ha1 321 LVVSTSCSLLHTAVDLINETKLDDEIKSWMAFAAQKVVEVNALAKALAGQKDEALFSANAAALASRRSSPRVTN 394 (394)
T ss_dssp EEEEESSCGGGSCSCGGGCCSSCHHHHHTBCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHCTTTCC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99938998767787174335799889845151999999999999997288308999999999998843887789
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=0 Score=29712.76 Aligned_cols=1 Identities=0% Similarity=-1.723 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~d~i~~l~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~ 80 (394)
T d2ay1a_ 1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGE 80 (394)
T ss_dssp CGGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 98778878998399999997178998978851787658889989888999999998508878988997778999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~ 160 (394)
T d2ay1a_ 81 LILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMK 160 (394)
T ss_dssp HHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHH
T ss_pred HHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCEEEEECCCCHHCCCCCCHHHH
T ss_conf 97365654346420003572688889988765428844999832321011899998599799941430101442202688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s 240 (394)
T d2ay1a_ 161 ADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAAS 240 (394)
T ss_dssp HHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 88764136868999479999899989999999999875304289987525122211666664045544443245443345
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~ 320 (394)
T d2ay1a_ 241 CSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLRE 320 (394)
T ss_dssp CTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55666677654201030426899999865366765202423224788889887227888999999999999999999999
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~~~~~~L~~~~~V~~~~g~Ri~~a~l~~~~i~~l~~ai~~v~~ 394 (394)
T d2ay1a_ 321 QLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEVGV 394 (394)
T ss_dssp HHHHHHHHHHTSSTTTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHCCEEECCCCEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 99999998489886036779961698519399999999996898956987899537998889999999998279
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=0 Score=29711.67 Aligned_cols=1 Identities=100% Similarity=-0.095 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~f~~~~~r~~~~s~k~~~~~~~~~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~~g~~~Lr~aia~~~~ 80 (394)
T d1c7na_ 1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMK 80 (394)
T ss_dssp CCCCSCCCCCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 97678977677999878899999876754997688327997999889999999999857886899987999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~ 160 (394)
T d1c7na_ 81 DRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLS 160 (394)
T ss_dssp HHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHH
T ss_pred HHCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 85599888750476334212343321034444332333467662046677654300222222245655540255666553
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 240 (394)
T d1c7na_ 161 KDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTF 240 (394)
T ss_dssp TCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHH
T ss_pred CCCCCEEEEECCCCCCCCEECCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC
T ss_conf 04563299945523565412569995343203454320586145532124588666410111002311103234542001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (394)
T d1c7na_ 241 NIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP 320 (394)
T ss_dssp TCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEC
T ss_conf 22222322223567033445555543003443222221024554200144301311121012321000121256530422
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~p~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~~~l~~Lk 394 (394)
T d1c7na_ 321 LIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394 (394)
T ss_dssp CCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 78950489897888899999999999986999997423418899987999995899999999999999999639
|
| >d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: p450 monoxygenase OxyB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=29709.60 Aligned_cols=1 Identities=0% Similarity=-1.122 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~p~~~~~~~~dp~~~lr~~~p~~~~~~~~~~~~~~~w~vt~~~dv~~Vl~d~~~f~s~~~~~~~~~~~~~~~~~~~~~ 80 (394)
T d1lfka_ 1 DPRPLHIRRQGLDPADELLAAGALTRVTIGSGADAETHWMATAHAVVRQVMGDHQQFSTRRRWDPRDEIGGKGIFRPREL 80 (394)
T ss_dssp CCSCGGGCEETTEECHHHHTSCSEEEEC------CCCEEEECSHHHHHHHHHCTTTEEECTTCCC-------------CC
T ss_pred CCCCHHCCCCCCCCHHHHHHHCCEEEEECCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 98961104235995799997499058978888888668996799999999759864547765565444565433340432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~ll~~Dg~~H~~~R~~l~~~fs~~~v~~~~~~i~~~~~~ll~~l~~~g~~~Dl~~~~~~~~~~~~~~~~~g~~~~~~~ 160 (394)
T d1lfka_ 81 VGNLMDYDPPEHTRLRRKLTPGFTLRKMQRMAPYIEQIVNDRLDEMERAGSPADLIAFVADKVPGAVLCELVGVPRDDRD 160 (394)
T ss_dssp TTCGGGCCTTHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEHHHHTTTTHHHHHHHHHHTCCGGGHH
T ss_pred CCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEECCCCCHHHHH
T ss_conf 34133048756899998854331999999998899999999986520268763025676541111021100475301389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~r~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~ag~~tt~~~ 240 (394)
T d1lfka_ 161 MFMKLCHGHLDASLSQKRRAALGDKFSRYLLAMIARERKEPGEGMIGAVVAEYGDDATDEELRGFCVQVMLAGDDNISGM 240 (394)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHGGGSCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99998862233210037999999999999999999864002210000001013678989999999999998643205889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~r~~~~~~~~~~r~~~~d~~~~g~~ip~G~~V~~~~~~~~rdp~~~~d 320 (394)
T d1lfka_ 241 IGLGVLAMLRHPEQIDAFRGDEQSAQRAVDELIRYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPALAPD 320 (394)
T ss_dssp HHHHHHHHHHSGGGGGGGSSCHHHHHHHHHHHHHHHCCBSCCSCEEESSCEEETTEEECTTCEEEECHHHHTTCTTTCTT
T ss_pred HHHHHHHHHCCHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCEEECCCCCEEECCCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999875222045543101223332110000000023321012113567121483542687401232334679212667
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 P~~F~PeR~~~~~lpFG~G~r~C~G~~lA~~e~~~~l~~Ll~~f~~~~l~~p~~~~~~~~~~~~~g~~~lpv~~ 394 (394)
T d1lfka_ 321 VDRLDVTREPIPHVAFGHGVHHCLGAALARLELRTVFTELWRRFPALRLADPAQDTEFRLTTPAYGLTELMVAW 394 (394)
T ss_dssp TTSCCTTSCCCCCCTTCCSTTSCTTHHHHHHHHHHHHHHHHHHCTTCEESSTTCCCEEECSSSBCEEEECEEEC
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEECCCCCCCCEEEEEEC
T ss_conf 33218899999988878987578069999999999999999967988778886766030687777870005359
|
| >d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Exo-beta-(1,3)-glucanase species: Yeast (Candida albicans) [TaxId: 5476]
Probab=100.00 E-value=0 Score=29708.85 Aligned_cols=1 Identities=0% Similarity=0.371 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
+
T Consensus 1 ~~~~~~~~~rGvNlGgwlv~E~w~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~h~~~~it~~D~~~i~~~ 80 (394)
T d2pb1a1 1 AWDYDNNVIRGVNLGGWFVLEPYMTPSLFEPFQNGNDQSGVPVDEYHWTQTLGKEAALRILQKHWSTWITEQDFKQISNL 80 (394)
T ss_dssp CCCTTTCCEEEEECTTSSSCCTTTCGGGTGGGCBTTBCTTSCCSHHHHHHHHCHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred CCCCCCCEEEEEECCHHHCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 97888977898864334305765583344313677765443201888998739687999999998604889999999977
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 G~N~VRiPv~~~~~~~~~~~~~~~~~~~~ld~~i~~a~~~gl~VilDlH~~pg~~~~~~~~g~~~~~~~~~~~~~~~~~~ 160 (394)
T d2pb1a1 81 GLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSYNFQNGDNTQVTLN 160 (394)
T ss_dssp TCCEEEEEEEGGGTCCCTTCCCCCCHHHHHHHHHHHHHHTTCEEEEEEEECTTCSSCCGGGSSTTCCCTTSTTHHHHHHH
T ss_pred CCCEEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99889998027884488877552368999999999999799189998511588666767767667644366779999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~ia~~~~~~~~~~~v~g~el~NEP~~~~~~~~~~~~~~~~~~~~IR~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T d2pb1a1 161 VLNTIFKKYGGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYWNNFLTVAEGQW 240 (394)
T ss_dssp HHHHHHHHHSSGGGTTTEEEEESCSCCCGGGSCHHHHHHHHHHHHHHHHHTTCCCCEEEECTTCCTTTTTTSSCGGGTCC
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCCC
T ss_conf 99999999715887770688741356786654378999999999999997389976998488755344444315788886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~vv~d~H~Y~~f~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ge~s~~~~d~~~~~~~~~~~~~~~g~~~~~~~~Ge~ 320 (394)
T d2pb1a1 241 NVVVDHHHYQVFSGGELSRNINDHISVACNWGWDAKKESHWNVAGEWSAALTDCAKWLNGVNRGARYEGAYDNAPYIGSC 320 (394)
T ss_dssp SEEEEEECCSCSSHHHHTCCHHHHHHHHHHHHHHHHTCSSEEEEEECCSCSSCCSTTTTCTTCCCTTBTCSTTCCBCCCS
T ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 27985311434678655689888787663034555315676120201023005666623655342214654787655646
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~d~~~~~~~~~~~~r~~~~aQ~~~~e~~~GW~fWt~K~~~~~~W~~~~~~~~G~iP~~~~~~~~~~~c~~~ 394 (394)
T d2pb1a1 321 QPLLDISQWSDEHKTDTRRYIEAQLDAFEYTGGWVFWSWKTENAPEWSFQTLTYNGLFPQPVTDRQFPNQCGFH 394 (394)
T ss_dssp GGGSSGGGCCHHHHHHHHHHHHHHHHHHHTTTEEEESCSCCSSCGGGCHHHHHHTTCSCSSTTCCSSTTSSCCC
T ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCHHCCCCCCCCCC
T ss_conf 66567101678899999999999999985279678963016999988889998788969991323688888999
|
| >d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cullin repeat-like family: Cullin repeat domain: Cullin homolog 1, Cul-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29713.57 Aligned_cols=1 Identities=100% Similarity=-0.394 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~d~~W~~L~~ai~~I~~~~~~~~~~~~~lY~~vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l 80 (394)
T d1ldja2 1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL 80 (394)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 96349999999999986699997999999999999994487432000111101121000121025457999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~l~~i~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~~~~~~I~~~~l~~fr~~v~~~~~ 160 (394)
T d1ldja2 81 KNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLN 160 (394)
T ss_dssp HHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTTTTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999877437879999999999999999999999999886689988604445666541999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~l~~~il~~I~~~R~g~~i~~~li~~~i~~l~~l~~~~~~~~~~~~~~~~Y~~~FE~~~L~~t~~~Y~~~~~~~l~~~~ 240 (394)
T d1ldja2 161 KQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNP 240 (394)
T ss_dssp THHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998678966699999999999994832323330132278878998999999999999999999998498
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~eYl~~v~~~l~eE~~r~~~yl~~~t~~~l~~~l~~~LI~~~~~~l~~~~~~ll~~~~~~~L~~lY~L~~rv~~~~~~l 320 (394)
T d1ldja2 241 VTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGEL 320 (394)
T ss_dssp TTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHHHHHHHHHHSCCTTHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 35899999999999999999746864699999999999999999999999999987165889999999986553518999
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~~~~I~~~G~~~i~~~~~~~~~~~~~~V~~ll~l~~~~~~ii~~~F~~d~~f~~~l~~af~~fiN~n~~~~ 394 (394)
T d1ldja2 321 KKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTK 394 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999997233114578689999999999999999999859988999999999999837666689
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Probab=100.00 E-value=0 Score=29705.83 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~q~f~w~~~~~g~~~~~i~~kLdyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd~~~Gt~~d 80 (394)
T d2d3na2 1 TNGTMMQYFEWYLPNDGNHWNRLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQ 80 (394)
T ss_dssp CCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSBTTBCHHH
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 98627887742657889719999998999997199989979570178878889786667554434446776888999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 f~~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (394)
T d2d3na2 81 LQAAVTSLKNNGIQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDG 160 (394)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSEECSCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEE
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999987998999971266567664310012235765433334564443444345676556778765444445787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~~~~~~~~w~~~~giDGfR~D~a~~~~~~ 240 (394)
T d2d3na2 161 VDWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGFRIDAVKHIKYS 240 (394)
T ss_dssp ESCCTTTCCSSCEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHH
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHH
T ss_conf 65556668888754006888765666652323420267762155888998788876565420567314774224437767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~df~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 320 (394)
T d2d3na2 241 FTRDWINHVRSATGKNMFAVAEFWKNDLGAIENYLQKTNWNHSVFDVPLHYNLYNASKSGGNYDMRNIFNGTVVQRHPSH 320 (394)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGGGTTTTCHHHHCGGG
T ss_pred HHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHCCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHH
T ss_conf 89999999987408740210212366632120010033442111037899999999840760539998721511069868
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~v~fl~NHD~~r~~~~~~~~~~~~~~la~a~~l~~~pGiP~iyyGdE~G~~~~~~p~~r~~~~~l~~~r~~~~~ 394 (394)
T d2d3na2 321 AVTFVDNHDSQPEEALESFVEEWFKPLAYALTLTREQGYPSVFYGDYYGIPTHGVPAMRSKIDPILEARQKYAY 394 (394)
T ss_dssp EEECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 05767288686524455673199999999999984999679972672098998895548999999999998479
|
| >d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: Family B DNA polymerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29707.41 Aligned_cols=1 Identities=0% Similarity=-0.959 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~y~Gg~V~~p~~G~~~~v~~lDf~SLYPsii~~~Ni~p~t~v~~~~~~~~~~~~~~~~~~~~~~~~g~lp~~ 80 (394)
T d1q8ia2 1 NLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIVRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEI 80 (394)
T ss_dssp CTTCSCCCCCCCCCCBCCCCEEEEEEEEEEETTHHHHHHHHHCCCHHHHHHHHHSCSTTTEEECSTTCEEESSSCSHHHH
T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHH
T ss_conf 99888998899837837999757885588831127999999679965437877678876555786543332001178999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 l~~l~~~R~~~K~~~~d~~Q~a~Ki~~NS~YG~~g~~~~~~~~~~~A~~iT~~Gr~~i~~~~~~~e~~g~~ViygDTDSi 160 (394)
T d1q8ia2 81 VTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDST 160 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSEE
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99999742100002321024789871221206002455521136788889888589999988631223466650356418
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~E~~~~~~~~~~kk~~~~~~kkrY~g~~~~~~~~~~ 240 (394)
T d1q8ia2 161 FVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRM 240 (394)
T ss_dssp EEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCEEEEEEEEEEEECCCCTTCTTCCSCEEEEEEETTEEEE
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHEEEEHHHHHHHHHHHHHHHCCEEECCCCEE
T ss_conf 99947971245677889999998877656676665113432002553200000022112113234433000011233247
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~KG~e~vRrd~~~~~k~~~~~vl~~i~~~~~~~e~vk~~~~~l~~~~i~~~~i~~~~l~k~~~~y~~~~~~hV~~a~~~ 320 (394)
T d1q8ia2 241 VFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLA 320 (394)
T ss_dssp EEESSCC--CCCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTGGGGCC-------------------------
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 88750014666662677898989999963626888899999987605877045044543156000356787699999999
Q ss_pred -------------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~~~~~~~~~~g~~i~Yv~~~~~~~~~~~~~~~iD~~yYi~~qi~~~~~ril~~~~~~~~~~~~~~~~LF 394 (394)
T d1q8ia2 321 DEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF 394 (394)
T ss_dssp -----------------------------------CCCCHHHHHHHTHHHHHHTTGGGGTCCHHHHHHHHHCC-
T ss_pred HHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC
T ss_conf 98766327988899898679999899986577548998789999974089999998762788999974686889
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29635.99 Aligned_cols=1 Identities=0% Similarity=-0.094 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 t~~~~~~f~T~~vHag~~~d~~gav~pPI~~ssTf~~~~~~~~~~~y~YsR~gnPT~~~lE~~la~LE~~~~a~~~sSGm 80 (393)
T d1n8pa_ 1 TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSGS 80 (393)
T ss_dssp CCCSSCCHHHHHHHTTCCCCSSCCSSCCBCCCSBCCBSSSSSBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHH
T ss_pred CCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 99878981042077898899898826882788765138864535773353899868999999999971995488834701
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 aAi~~~l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~i 160 (393)
T d1n8pa_ 81 ATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKV 160 (393)
T ss_dssp HHHHHHHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHH
T ss_pred HHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCEEEECCCCHHHHHCCCHHHH
T ss_conf 67776653035798344322001340344454541255225885135689999851201346723763234320203555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 a~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p 240 (393)
T d1n8pa_ 161 ADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSP 240 (393)
T ss_dssp HHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCH
T ss_pred HHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHCCCEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCH
T ss_conf 54444201467845998567447044770541898999816644579886026301102166999999998643888986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~~~ 320 (393)
T d1n8pa_ 241 FDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAAS 320 (393)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEEEECCHHHHH
T ss_conf 88999982775034679999998888999997336727997302334543200222103457877148999959999999
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGlE~~~DLi~Dl~~AL~~a~~ 393 (393)
T d1n8pa_ 321 KFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQATN 393 (393)
T ss_dssp HHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCEECCCCCCCCCEEECCHHHCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 9997188443561677757147376022542289999996598949799986528999999999999999649
|
| >d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain b3728 [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Arthrobacter, strain b3728 [TaxId: 1663]
Probab=100.00 E-value=0 Score=29635.46 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~p~~~~~f~~~~Wt~~~~g~dpFG~~t~~~~d~~~~~~~~~~lG~~~~~fHd~D~~p~~~~~~e~~~~~~~~k~~l~~~ 80 (393)
T d1xlma_ 1 VQPTPADHFTFGLWTVGWTGADPFGVATRKNLDPVEAVHKLAELGAYGITFHDNDLIPFDATEAEREKILGDFNQALKDT 80 (393)
T ss_dssp CCCCGGGCEEEEHHHHTCCCCBTTBCCCSCCCCHHHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99984456417886146678899898878899999999999981998880352334888998788999999999999853
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 Gl~l~~~t~nlf~~p~~~~Ga~tnPD~~VR~~Ai~~~k~~idia~~LGa~~~v~W~G~~G~~~~~~~d~~~~~~~l~e~l 160 (393)
T d1xlma_ 81 GLKVPMVTTNLFSHPVFKDGGFTSNDRSIRRFALAKVLHNIDLAAEMGAETFVMWGGREGSEYDGSKDLAAALDRMREGV 160 (393)
T ss_dssp TCEEEEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSSEESSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98110223664334355437756959999999999999999999996898499736888677777658999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~v~~~a~~~g~~~~~~IEpKP~EP~~~~~~~~~~~~l~fl~~~~~~~~~gvnlD~gH~~lag~~~~~~va~a~~~gkLg 240 (393)
T d1xlma_ 161 DTAAGYIKDKGYNLRIALEPKPNEPRGDIFLPTVGHGLAFIEQLEHGDIVGLNPETGHEQMAGLNFTHGIAQALWAEKLF 240 (393)
T ss_dssp HHHHHHHHHHTCSCEEEECCCSCSSSSEESSCSHHHHHHHHTTCTTGGGEEECCBHHHHHTTTCCHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHCCCCE
T ss_conf 99999898629885698611677775554037599999999980894204575204524441577078898998669730
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~vh~Nd~~~~~~D~Dl~~gs~~~~~~~~~~~~l~~g~~~g~~~y~G~~~fD~~~~r~~~~e~~~~~~~~~~~~~~~l~~~ 320 (393)
T d1xlma_ 241 HIDLNGQRGIKYEQELVFGHGDLTSAFFTVDLLENGFPNGGPKYTGPRHFDYKPSRTDGYDGVWDSAKANMSMYLLLKER 320 (393)
T ss_dssp CCEECBCCSSSSCCCBCTTSSCHHHHHHHHHHHHHCCTTCCCCCCSCEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 24426787666666677885469999999999953664678787775588722667887306999999999999999999
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 A~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~e~L~q~~~~~l~g~~ 393 (393)
T d1xlma_ 321 ALAFRADPEVQEAMKTSGVFELGETTLNAGESAADLMNDSASFAGFDAEAAAERNFAFIRLNQLAIEHLLGSR 393 (393)
T ss_dssp HHHHHHCHHHHHHHHHHTTTGGGSCSSCTTCCHHHHHTCGGGTTTCCHHHHTTCCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9997519999999986565021045543899889999788753699845552232689999999999970489
|
| >d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: A4 beta-galactosidase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29634.31 Aligned_cols=1 Identities=0% Similarity=-1.358 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~p~~~~~~~~~~D~~~~~~~G~n~vR~~i~~W~~iep~~G~~~~~~~d~~i~~~~~~Gi~~iv~l~~~~~P~w~ 80 (393)
T d1kwga2 1 MLGVCYYPEHWPKERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWGWLDEAIATLAAEGLKVVLGTPTATPPKWL 80 (393)
T ss_dssp CEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEECTTCHHHHCSBTTBCCCHHHHHHHHHHHTTTCEEEEECSTTSCCHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 94763584549999999999999982999899555346531888992687999999999998799999976777775343
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ne~~~~~~~~~~~~~~~~~~~ 160 (393)
T d1kwga2 81 VDRYPEILPVDREGRRRRFGGRRHYCFSSPVYREEARRIVTLLAERYGGLEAVAGFQTDNEYGCHDTVRCYCPRCQEAFR 160 (393)
T ss_dssp HHHCGGGSCBCTTSCBCCSSSSCCCCTTCHHHHHHHHHHHHHHHHHHTTCTTEEEEECSSSTTTTTTSCCCSHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 21486501245778504666666667799999999999999998771688537887403555655775443167777778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (393)
T d1kwga2 161 GWLEARYGTIEALNEAWGTAFWSQRYRSFAEVELPHLTVAEPNPSHLLDYYRFASDQVRAFNRLQVEILRAHAPGKFVTH 240 (393)
T ss_dssp HHHHHHHSSHHHHHHHHTTTGGGCCCSSGGGCCCSCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 88887665299999876530022223676545676555555662565899998777677787889875421465555435
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 320 (393)
T d1kwga2 241 NFMGFFTDLDAFALAQDLDFASWDSYPLGFTDLMPLPPEEKLRYARTGHPDVAAFHHDLYRGVGRGRFWVMEQQPGPVNW 320 (393)
T ss_dssp EECTTCCSSCHHHHGGGSSSEEEEECHHHHHHHSCCCHHHHHHTTTTCCTTHHHHHHHHHHHHTTTCEEEEEECCSCCSS
T ss_pred CCCCCCCCCCHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 55566656423331256652121355555445566784223444446881688999999997347987036513666666
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~~aia~G~~~~gy~~W~~~~~~~E~~~~gL~~~d~~p~~~~~~~~~~~~~l~~~~~~ 393 (393)
T d1kwga2 321 APHNPSPAPGMVRLWTWEALAHGAEVVSYFRWRQAPFAQEQMHAGLHRPDSAPDQGFFEAKRVAEELAALALP 393 (393)
T ss_dssp SSSCCCCCTTHHHHHHHHHHHTTCSCEEEECSBCCSSSTTTTSCCSBCTTSCBCHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 6468889867999999999977998889857557889750010014078899578999999999999974499
|
| >d1g8ma2 c.97.1.4 (A:201-593) AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Cytidine deaminase-like superfamily: Cytidine deaminase-like family: AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC domain: AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=100.00 E-value=0 Score=29633.87 Aligned_cols=1 Identities=100% Similarity=2.397 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 g~~~~~LRYGENPHQ~aA~~~~~~~~~~~~~l~gk~SyNN~lD~daA~~lv~ef~~~~~~Pa~vIiKH~NPCGvAi~~~~ 80 (393)
T d1g8ma2 1 GVSQLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDALNAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPL 80 (393)
T ss_dssp TTTEEEESCSSSTTSCCEEEECSSSSCSEEEEESCCCHHHHHHHHHHHHHHHHHHHHHCSCEEEEEETTEEEEEEECCCC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCC
T ss_conf 99879887976805411386216874316886687027679889999999997465059976999768883366508551
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~e~~~~~~~~~~~~~~~~~l~~Ay~~A~~~DP~SAFGGIIa~N~~vd~~~A~~i~~~F~EvIIAP~f~~eAleiL~~KKN 160 (393)
T d1g8ma2 81 SEEEAQVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKN 160 (393)
T ss_dssp CHHHHHHTTCTTTGGGCCHHHHHHHHHHHSCTTTTTTEEEEESSCBCHHHHHHHHTSCEEEEEESCBCHHHHHHHHHGGG
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCHHCCEEEEECCCCCCCHHHHHHHCCCCHHCCCCCCHHHHHHHHHCCC
T ss_conf 02332000012211346629999999871485100050788615533210243222020100113455677888742545
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 lRll~~~~~~~~~~~~~~~r~i~gg~L~Q~~d~~~~~~~~~~~v~~~~~~pt~~e~~dL~FAwkVvK~vKSNAIvlak~~ 240 (393)
T d1g8ma2 161 GGYCVLQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDG 240 (393)
T ss_dssp GTCEEEEECTTCCCCSEEEEEETTEEEEEECCCCCCSGGGGCCBCSSSCCCCHHHHHHHHHHHHHHHTSCSSCEEEEETT
T ss_pred CCHHHHCCCCCCCCCCCCEEEEECCEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 21343024644577666367750531110123332455551343202345168899999999999862366458996298
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~tvGIGaGQ~SRVdsv~iA~~KA~~~~~r~~p~v~~~~~k~~~~~~e~~na~~~~~~~~~~~~e~~~~~~~~f~~~~~~l 320 (393)
T d1g8ma2 241 QVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQL 320 (393)
T ss_dssp EEEEEECSCSCHHHHHHHHHHHHHHHHHTTCHHHHTCEECTTCCHHHHHHHHHHHHHTCSCSTHHHHHHHTTEEECCCCC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHH
T ss_conf 68831899765478999999999887764063011000000134555541677651354332035566655420143112
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~g~vlASDAFFPF~D~ie~aa~~Gv~aIiQPGGSirD~evI~aan~~~i~M~fTg~RhF~H 393 (393)
T d1g8ma2 321 TEAEKKQWIAKLTAVSLSSDAFFPFRDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNLRLFHH 393 (393)
T ss_dssp CHHHHHHHHTTCCCEEEEESSCCSSTHHHHHHHTTTEEEEEEECCCTTHHHHHHHHHHHTCEEEEESCCCCCC
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCEEEECCCCCCCC
T ss_conf 3788764430357857980268687568999998599399879874251999999998598899878867288
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29629.10 Aligned_cols=1 Identities=0% Similarity=-0.725 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (393)
T d1sq9a_ 1 KVFIATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 80 (393)
T ss_dssp CEEEEEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred CCEEEEEECCCCCCCCCEEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCC
T ss_conf 91582452087636712799996999999979996998789878877654046765420477167666750015799876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~ 160 (393)
T d1sq9a_ 81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160 (393)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCC
T ss_conf 89999489919999822898205651245632431157896689998447886542179998389819998740477534
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 240 (393)
T d1sq9a_ 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240 (393)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred CEEEEEECCCEECCCCEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 10233103200014510002578986789997899989999389829998602332110000111112425638770046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred CCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCC
T ss_conf 65320112428988421001035321344431156666431023202358666001389888069877999899999999
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~~g 393 (393)
T d1sq9a_ 321 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 393 (393)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred CCEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCEEEECCCCCEECCCCCCCCEEEEEECCCEEEEEECCC
T ss_conf 9799999886876137734899999999999831246998866766312368899799999199089990899
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=29630.83 Aligned_cols=1 Identities=100% Similarity=2.231 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHH
T ss_conf 99899989984899999999997859899994677542211012111343321577887777622797079983078999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~~ 160 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGY 160 (393)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSSE
T ss_pred HHHHHHHHHCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf 99999975110120012342101232222222222333223354078999998431242011012111223356643233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (393)
T d1i24a_ 161 ITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTAL 240 (393)
T ss_dssp EEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 32222235555542135455777775310012111223310233310123112777654555542223555445655300
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~~~~~~~ 320 (393)
T d1i24a_ 241 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVKK 320 (393)
T ss_dssp HHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTTTCCCCE
T ss_pred HHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCE
T ss_conf 15667764497268852012223455333337789998874034330466437898067999999999998761987524
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~d~~k~~~LGw~P~~~~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (393)
T d1i24a_ 321 MTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSMT 393 (393)
T ss_dssp EEECCSSCSCSSCCCCBCCCHHHHTTCCCCCCCHHHHHHHHHHHHHTGGGCCGGGSSCCCCTTTCCSSCCCC-
T ss_pred EECCCCCCCCCCCEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC
T ss_conf 5646899889866763789999974994056999999999999999887501764588888750011224669
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Probab=100.00 E-value=0 Score=29629.45 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~f~w~~~~~gg~~~gi~~kLdylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd~~~Gt~~d 80 (393)
T d1e43a2 1 VNGTLMQYFEWYTPNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSE 80 (393)
T ss_dssp CCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHH
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 97617886766778889899999997899997599989969572689888999786567665434456766888999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 f~~Lv~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (393)
T d1e43a2 81 LQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDG 160 (393)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGGEEE
T ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999986998999870025557775444442235741113566654555344555667778877666555444788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~np~v~~~~~~~~~~w~~~~GiDGfR~Da~~~~~~~f 240 (393)
T d1e43a2 161 ADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSF 240 (393)
T ss_dssp ESCBTTTTBCCEEEECSSSCCCCSSSCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
T ss_conf 87666677677322157645555556555540202332311437714567799998766543486537861345689799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (393)
T d1e43a2 241 LRDWVQAVRQATGKEMFTVAEYWQNNAGKLENYLNKTSFNQSVFDVPLHFNLQAASSQGGGYDMRKLLNGTVVSKHPLKS 320 (393)
T ss_dssp HHHHHHHHHHHHCSCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGGGTTTTCSTTTCGGGE
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 99999999874286057766533773776641222044430454117799999877216648899998515111680402
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 v~fl~nHD~~R~~~~~~~~~~~~~~la~a~ll~~~pG~P~IyyGdE~G~~g~~~~~~~~~~~~i~~l~~~rk~ 393 (393)
T d1e43a2 321 VTFVDNHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGTKGDSQREIPALKHKIEPILKARKQ 393 (393)
T ss_dssp EEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCCCCSSTTCCCCCHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 5755178773413356763479999999999982899479871573299998998867789999999998684
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=29628.31 Aligned_cols=1 Identities=0% Similarity=0.338 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~f~w~~~~~~~~~~~i~~kLdyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd~~~Gt 80 (393)
T d1hvxa2 1 AAPFNGTMMQYFEWYLPDDGTLWTKVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGT 80 (393)
T ss_dssp CCCCCCCEEECCCTTCCSSSCHHHHHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCC
T ss_pred CCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98988648996750668889709999997899997499989979888688889989886676555545556776878899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~df~~LV~~aH~~GIkVIlDvV~NHt~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (393)
T d1hvxa2 81 KAQYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYH 160 (393)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCTTTTTSSCCCCBCGGG
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999987998999984355446677542110134764334455787444455556777777778776655555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~l~~~~~~w~~~~giDGfR~D~a~~i~ 240 (393)
T d1hvxa2 161 FDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFRLDAVKHIK 240 (393)
T ss_dssp EEEEEEETTTTEEEEEEECSTTCCCCSSCCCTTSCCCCCSSEEECTTCHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 78776556677676433268757556555554300101453300557737777788899998876388615642245578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~f~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
T d1hvxa2 241 FSFFPDWLSYVRSQTGKPLFTVGEYWSYDINKLHNYIMKTNGTMSLFDAPLHNKFYTASKSGGTFDMRTLMTNTLMKDQP 320 (393)
T ss_dssp TTHHHHHHHHHHHHHCCCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHTTTCSCGGGTTTTCHHHHCG
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
T ss_conf 66799999999874477623551002763777777764045655003089999999987038779999999753423784
Q ss_pred ------------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~v~fl~NHD~~r~~~~~~~~~~~~~~~a~a~~l~~~pGiP~iyyGdE~G~~~~~~p~~~~~i~~~~~~rk~ 393 (393)
T d1hvxa2 321 TLAVTFVDNHDTEPGQALQSWVDPWFKPLAYAFILTRQEGYPCVFYGDYYGIPQYNIPSLKSKIDPLLIARRD 393 (393)
T ss_dssp GGEEEESCCTTTSTTSTTCCCCCTTTHHHHHHHHHHSSSSEEEEEHHHHHCBGGGTBCCCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 3186877578785513444587999999999999982899389883672299996999707786999997179
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=29564.37 Aligned_cols=1 Identities=0% Similarity=-1.590 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~g~~T~~vH~G~~~~~~~g~v~pPI~~ssT~~f~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEg~~~a~~~ 80 (392)
T d1gc0a_ 1 LPGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 80 (392)
T ss_dssp CCCHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCCHHCEECCCCCCCCCCCEECCCCCCCCEEECCHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEH
T ss_conf 94812020548988877899950882288887518889999862688688523289886899999999998399511101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~~~~~ai~~~t~lv~~Esp~NP~l~v 160 (392)
T d1gc0a_ 81 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHM 160 (392)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCEEEE
T ss_conf 44789999998752369980001211110145564321024774224578667999998478787599964666321354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~ 240 (392)
T d1gc0a_ 161 ADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAV 240 (392)
T ss_dssp CCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCC
T ss_pred CCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 24399999998459879983672574505867848988998665203598554431024306789898899999703886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~ 320 (392)
T d1gc0a_ 241 LSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGR 320 (392)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHH
T ss_conf 88045799982206089999999999999999997399865786524458865332133456778379999959999999
Q ss_pred -----------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~~AL~aa~ 392 (392)
T d1gc0a_ 321 RFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKASA 392 (392)
T ss_dssp HHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCEEEECCCCCCHHHCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 999858846671246876850108622264228999999759792969998601899999999999999629
|
| >d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: APH phosphotransferases domain: Methylthioribose kinase MtnK species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=29559.46 Aligned_cols=1 Identities=100% Similarity=0.703 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~e~Lt~~~~~~la~~lg~~~~~~~l~~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E 80 (392)
T d2pula1 1 KTPLYETLNESSAVALAVKLGLFPSKSTLTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIE 80 (392)
T ss_dssp CCCCCCCCCHHHHHHHHHHTTC-----CCEEEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEECCCCHHCCCCCCCCCCHHHHHHH
T ss_conf 99877269989999999984998988873699807985276899995799848999617713034677788877899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~L~~~~~~~p~~vP~v~~~d~~~~~lvmE~L~~~~~~~~~l~~~~~~~~~a~~lg~~La~~h~~~~~~~~~~~~~~~~ 160 (392)
T d2pula1 81 SSALIRQGEHVPHLVPRVFYSDTEMAVTVMEDLSHLKIARKGLIEGENYPHLSQHIGEFLGKTLFYSSDYALEPKVKKQL 160 (392)
T ss_dssp HHHHHHHHTTCGGGSCCEEEEETTTTEEEECCCTTSEEHHHHHHHTCCCTTHHHHHHHHHHHHHHHTSTTTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
T ss_conf 99999865057988552899859887798713577653022201542128999999999999998735033442111012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~n~~l~~~~e~~~~~~py~~~~~~~~~~~~~~~~~~l~~d~~l~~~~~~l~~~~~~~~~~LiHGDl~~gNIlv~~~ 240 (392)
T d2pula1 161 VKQFTNPELCDITERLVFTDPFFDHDTNDFEEELRPFVEKLWNNDSVKIEAAKLKKSFLTSAETLIHGDLHTGSIFASEH 240 (392)
T ss_dssp HHHTCCHHHHHHHHHHTTTGGGTTCTTCCCCGGGHHHHHHHHTCHHHHHHHHHHHHHHHHBCCEEECSCCCGGGEEECSS
T ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCEEECCC
T ss_conf 33446578887777640104788988741065455778765520789999999874323688600335776784667599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~vID~E~a~~G~~~~Dlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~ 320 (392)
T d2pula1 241 ETKVIDPEFAFYGPIGFDVGQFIANLFLNALSRDGADREPLYEHVNQVWETFEETFSEAWQKDSLDVYANIDGYLTDTLS 320 (392)
T ss_dssp CEEECCCTTCEEECTHHHHHHHHHHHHHHHHHSCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTTSTTHHHHHHH
T ss_pred CEEEECHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 30895226522287899999999999999740663034568999999999999999999876165500034899999999
Q ss_pred -----------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~d~~~~~g~~~~rr~~g~a~~~d~~~i~~~~~r~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 392 (392)
T d2pula1 321 HIFEEAIGFAGCELIRRTIGLAHVADLDTIVPFDKRIGRKRLALETGTAFIEKRSEFKTITDVIELFKLLVK 392 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 999999998889999987341444421315798889999999999999999615512999999999999709
|
| >d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Indolic compounds 2,3-dioxygenase-like superfamily: Indolic compounds 2,3-dioxygenase-like family: Indoleamine 2,3-dioxygenase-like domain: Indoleamine 2,3-dioxygenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29559.33 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~f~vs~~~GFLp~~Pl~~LP~~y~~w~~i~~~lp~Ll~~~~lr~~V~~LP~l~~~~l~~~~~~r~a~~~lsfla~aYi 80 (392)
T d2d0ta1 1 SKEYHIDEEVGFALPNPQENLPDFYNDWMFIAKHLPDLIESGQLRERVEKLNMLSIDHLTDHKSQRLARLVLGCITMAYV 80 (392)
T ss_dssp CCSSSCBTTTBTSCSSCCCCCCGGGHHHHHHHHTHHHHHHTTCHHHHHHHCCCCCSTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 97334087768899984565786327999999987887755809999984786784433896999999999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 w~~~~~~~~~~LP~~Ia~Pl~~vs~~Lg~pP~ltYa~~~L~Nw~~~dp~~~~~~dNl~~i~~F~g~~dE~~F~lv~v~iE 160 (392)
T d2d0ta1 81 WGKGHGDVRKVLPRNIAVPYCQLSKKLELPPILVYADCVLANWKKKDPNKPLTYENMDVLFSFRDGDCSKGFFLVSLLVE 160 (392)
T ss_dssp HTTSSSCCCSEECHHHHHHHHHHHHHHTCCSSCCHHHHTTSSEEESSTTSCSCGGGEEESCCSSTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 07899977778987888999999997499986516556310310058778887330556402789974135789879999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~l~~~~~~~~a~~~~d~~~~~~~l~~i~~~i~~i~~~~~~m~e~~~p~~fy~~~R~fi~G~k~~~~~p~GviYeg 240 (392)
T d2d0ta1 161 IAAASAIKVIPTVFKAMQMQERDTLLKALLEIASCLEKALQVFHQIHDHVNPKAFFSVLRIYLSGWKGNPQLSDGLVYEG 240 (392)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCHHHHHHTHHHHTCCBSSCGGGTTCBEETT
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEEEECCCCCCCCCCEECC
T ss_conf 86446999999999998767758799999999999999999998502029855621423545322437776888730036
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~p~~~~G~SgaQSsii~~lD~~LGv~h~~~~~~l~~~L~~mR~YmP~~HR~Fl~~l~~~~~ir~~v~~~~~~~L~~a 320 (392)
T d2d0ta1 241 FWEDPKEFAGGSAGQSSVFQCFDVLLGIQQTAGGGHAAQFLQDMRRYMPPAHRNFLCSLESNPSVREFVLSKGDAGLREA 320 (392)
T ss_dssp TCSSCBCBCCCCGGGCHHHHHHHHHTTCCSSCSSSHHHHHHHHHGGGSCHHHHHHHHHHHTSCCHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHH
T ss_conf 77776426788766664089999995785668875088999999985739999999999840436788870588899999
Q ss_pred -----------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 y~~~v~~l~~FR~~H~~~v~~YIi~~~~~~~~~~~~~~~~~~~~~~gTGGT~~~~fLk~~rd~t~~~~~~~~ 392 (392)
T d2d0ta1 321 YDACVKALVSLRSYHLQIVTKYILIPASQQPKENKTSEDPSKLEAKGTGGTDLMNFLKTVRSTTEKSLLKEG 392 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHTC-------------------CTHHHHHHHHHHHHHHHHTCSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999999999886641223678888888888217885488999997767887761389
|
| >d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes missouriensis [TaxId: 1866]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Actinoplanes missouriensis [TaxId: 1866]
Probab=100.00 E-value=0 Score=29557.81 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~kfs~g~Wt~~~~g~d~FG~~tr~~~~~~e~~~~l~~lG~~g~~fHd~dl~P~~~~~~~~~~~~~~~k~~l~~t 80 (392)
T d1xima_ 1 VQATREDKFSFGLWTVGWQARDAFGDATRTALDPVEAVHKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGFKKALDET 80 (392)
T ss_dssp CCCCGGGCEEEEHHHHTCCCCBTTBCCSSCCCCHHHHHHHHHHHTCSEEECBHHHHSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99986673579960366768799998877754799999999985998686067877888998788999999999999863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 Gl~~~~~t~nlf~~p~f~~Ga~TsPD~~vR~~Ai~~~k~aID~aaeLGa~~~v~W~G~~G~~~~~~~d~~~~~~~~~e~l 160 (392)
T d1xima_ 81 GLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREAL 160 (392)
T ss_dssp TCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEEECTTSEESSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98234663342447143158877939999999999999999999995898379637877667876558999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~v~dya~d~g~gv~~~IEpKP~EP~~~~~i~d~~~al~~i~~vg~p~~vgvnlD~gH~~~ag~~~~~~ia~a~~~gkL~ 240 (392)
T d1xima_ 161 NLLAQYSEDRGYGLRFAIEPKPNEPRGDILLPTAGHAIAFVQELERPELFGINPETGHEQMSNLNFTQGIAQALWHKKLF 240 (392)
T ss_dssp HHHHHHHHHHTCCCEEEEECCSSSSSSEESSCSHHHHHHHHTTSSSGGGEEECCBHHHHHTTTCCHHHHHHHHHHHTCBC
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCHHHHHHHHHHCCCEE
T ss_conf 99999887508885598603778887543407799999999971990036674113245433798579999998659789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 hvHlND~~~~~~D~DL~~Gs~~~~~~~~l~~~l~~g~~g~~~~~G~~~fD~~~~r~~~~~~~~~~~~~~~~~~~~l~~~a 320 (392)
T d1xima_ 241 HIDLNGQHGPKFDQDLVFGHGDLLNAFSLVDLLENGPDGAPAYDGPRHFDYKPSRTEDYDGVWESAKANIRMYLLLKERA 320 (392)
T ss_dssp CCEECBCCSSSSCCCBCTTSSSHHHHHHHHHHHHSCGGGSCSCCSCEEECCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99748998989888988898788899999999984777776777875402587677871069999999999999999999
Q ss_pred -----------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~l~~d~~~~~al~a~~~~~~~~~tl~~~~~~~~~~a~~~~~~~~~~~~~~~rg~~~~~l~q~~~~~l~~~~ 392 (392)
T d1xima_ 321 KAFRADPEVQEALAASKVAELKTPTLNPGEGYAELLADRSAFEDYDADAVGAKGFGFVKLNQLAIEHLLGAR 392 (392)
T ss_dssp HHHHHCHHHHHHHHHTTSGGGGSCSSCTTCCHHHHHHCGGGTTTCCHHHHHTSCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 998778788999998665663376556564468998767533346877786534369999999999972689
|
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Argonaute homologue Aq 1447 species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=29555.85 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~ 80 (392)
T d1yvua2 1 KLNFKDTVLDAKGKNTKVITNLRKFLELCRPFVKKDVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSL 80 (392)
T ss_dssp ECCCCCCEECSSCCEECCSSCCHHHHHHCCCCCSCSEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEE
T ss_pred CCCCHHHEECCCCCCCEEEECCEEHHHHCCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCCE
T ss_conf 92110210135899742223320224324732356634424789999631066799999999999986292645788671
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~Y~~IK~~~~~~gIptQ~i~~~tl~~~~~~~~~~NIa 160 (392)
T d1yvua2 81 ILAQTREEAKEKLIPVINKIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELLKKMIPSQVILNRTLKNENLKFVLLNVA 160 (392)
T ss_dssp EECSSTTHHHHHHHHHHTTTSSCSEEEEEEC----------CHHHHHHHHHHHHTTCCCEEEEHHHHHHSCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECHHHCCCCCCHHHHHHHH
T ss_conf 31277511599999998402677789999768888665554047999999985499664898866616898358999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 lqinaKlGGipw~l~~~~~~~tmiIGiDv~h~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~~~~~~~~l~~ 240 (392)
T d1yvua2 161 EQVLAKTGNIPYKLKEIEGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTEKAIGDVFSL 240 (392)
T ss_dssp HHHHHHTTCCSCEESCCTTCCSEEEEECEEECCCSSSCCCEEEEEEEECTTSCEEEEEEEEECSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99999849834688788999759999998715888984638999999868997789998854776078999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~P~rIIi~RdG~~~~~El~~i~~a~~~~~pki~~IvV~Krh~~Rff~~~~~~~Gt~v~~~~~~~~~~~s~~~~ 320 (392)
T d1yvua2 241 LEKLGFKKGSKIVVHRDGRLYRDEVAAFKKYGELYGYSLELLEIIKRNNPRFFSNEKFIKGYFYKLSEDSVILATYNQVY 320 (392)
T ss_dssp HHHTTCCTTCEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEEEEECSSCCCEECSCSCCTTEEEEBSSSEEEECCSCCCS
T ss_pred HHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCCCCEEECCCCEEEEEECCCCC
T ss_conf 99964999866999958877379999999999864995899999815882656789999998771798929999768857
Q ss_pred -----------------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 qGT~rP~~Y~vl~d~~~~d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~~~r~~~~p~~~~~~~~~~l 392 (392)
T d1yvua2 321 EGTHQPIKVRKVYGELPVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPIKKEGDIMYWL 392 (392)
T ss_dssp TTCCCCEEEEEEECSSCHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSSCCEEEESCCTTC
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 877788589998898998999999999775126718998007799999999999751178654575524219
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29484.95 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 k~~T~~vh~g~~~~~~~g~v~pPi~~sst~~f~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~~~ 80 (391)
T d1cl1a_ 1 KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFP 80 (391)
T ss_dssp CHHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCEECCCCCCCCCCCCCCCCEECCCCEEECCHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 91400360898999889984498548885362898999987527766866767899865999999999981995279851
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~ 160 (391)
T d1cl1a_ 81 CGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVH 160 (391)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGTCCTTEEEEEEESSCTTTCCCC
T ss_pred CCCCEEEEHHHCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 50001110222046778769983355520133322011233333200267311122233345553355303576532112
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~ 240 (391)
T d1cl1a_ 161 DVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMV 240 (391)
T ss_dssp CHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCCCCCEEEEECCHHCCCCCCCCCCCEECCCCCCCCCHHHHHCCCCCC
T ss_conf 32789998874157827998534332322111353340677623100036653334420003543210001111001357
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~ 320 (391)
T d1cl1a_ 241 DADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEEL 320 (391)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHH
T ss_conf 85120244435316788999999999999988874465433333222204568988630589876402453388899999
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGlEd~eDLi~Dl~~AL~~i~ 391 (391)
T d1cl1a_ 321 ANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARIV 391 (391)
T ss_dssp HHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCEECCCCCCCCCCCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 99997499265856778876533478222343579247659996979999561999999999999999669
|
| >d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-epi-vancosaminyltransferase GtfA species: Amycolatopsis orientalis [TaxId: 31958]
Probab=100.00 E-value=0 Score=29481.42 Aligned_cols=1 Identities=100% Similarity=-0.095 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 mril~~~~gt~Ghi~P~laLA~~L~~rGh~V~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T d1pn3a_ 1 MRVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVA 80 (391)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEECSSCSSGGGSCTTCCCTTCGGGHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEEEECCCCHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 97999858873689999999999998899899997803676898779848987836877734856666999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~l~~~~~~~D~vi~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (391)
T d1pn3a_ 81 EWFDKVPAAIEGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQAERDMYNQGADRLFGDAVNSHRASI 160 (391)
T ss_dssp HHHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGGSCHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999730798478734471378999999980876488531224455312220056788999888778899999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 240 (391)
T d1pn3a_ 161 GLPPVEHLYDYGYTDQPWLAADPVLSPLRPTDLGTVQTGAWILPDERPLSAELEAFLAAGSTPVYVGFGSSSRPATADAA 240 (391)
T ss_dssp SCCCCCCHHHHHHCSSCEECSCTTTSCCCTTCCSCCBCCCCCCCCCCCCCHHHHHHTTSSSCCEEEECTTCCSTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHH
T ss_conf 37663200024566640231542431157777771565686567655677888642115897278722431223278999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~p~~~ll~~a~~~v~hgG~~t~~Eal~~G~P~v~~P~~~d~~~ 320 (391)
T d1pn3a_ 241 KMAIKAVRASGRRIVLSRGWADLVLPDDGADCFVVGEVNLQELFGRVAAAIHHDSAGTTLLAMRAGIPQIVVRRVVDNVV 320 (391)
T ss_dssp HHHHHHHHHTTCCEEEECTTTTCCCSSCCTTCCEESSCCHHHHHTTSSCEEEESCHHHHHHHHHHTCCEEEECSSCCBTT
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHCCEEEECCCHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 99999998569779994364333445688988995446879998425489852743799999982886899335567745
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 eQ~~nA~~l~~~G~g~~l~~~~~~~~~l~~~i~~~l~~~~r~~a~~~a~~~~~~g~~~aa~~i~~~l~~~~ 391 (391)
T d1pn3a_ 321 EQAYHADRVAELGVGVAVDGPVPTIDSLSAALDTALAPEIRARATTVADTIRADGTTVAAQLLFDAVSLEK 391 (391)
T ss_dssp BCCHHHHHHHHHTSEEEECCSSCCHHHHHHHHHHHTSTTHHHHHHHHGGGSCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 29999999998798897685789999999999998399999999999999885279999999999987459
|
| >d1nt4a_ c.60.1.2 (A:) Glucose-1-phosphatase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate mutase-like superfamily: Phosphoglycerate mutase-like family: Histidine acid phosphatase domain: Glucose-1-phosphatase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29479.64 Aligned_cols=1 Identities=100% Similarity=0.736 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~vP~g~~L~~V~vl~RHG~R~P~~~~~~~~~~~~~~~~~~~~~~~g~LT~~G~~q~~~lG~~lr~~Y~~~~~l~~~~~~ 80 (391)
T d1nt4a_ 1 QTVPEGYQLQQVLMMSRANLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECP 80 (391)
T ss_dssp CCCCTTEEEEEEEEEECCCCBCCCGGGHHHHHHTCSSCCCCCSSCTTCBCHHHHHHHHHHHHHHHHHHHHTTSSCSSSCC
T ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99899998849999973867999988775313477344778999856110889999999999999998760677787778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~v~vrst~~~Rt~~SA~afl~Gl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (391)
T d1nt4a_ 81 PPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQ 160 (391)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHHSTTSCCCEECCSCCSSCCTTTCCCCCCCCSHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 70005886178719999999999972788777756443457777666775456652106788787764310243139999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T d1nt4a_ 161 LLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVL 240 (391)
T ss_dssp HHHHHHTGGGSTTTTTTCCCCTTTCCCEEECCTTSCCEEESHHHHHHHHHHHHHHHHHTTCCTTTGGGGTSCSTTHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99997633022144555555688888888875324766675077776599999999984899997434676769999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~~k~~l~s~HD~ti~~~l~aLgl~~~~~p~~~~~~p~~s~~ 320 (391)
T d1nt4a_ 241 SKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKI 320 (391)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHTHHHHHHHHHHTTTTTTTSCSEEEEECCHHHHHHHHHHTTBCCCCCTTCSSSSCTTCEE
T ss_pred HHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEE
T ss_conf 99999999986287688764022899999999873589886279997156689999998389866788877888976638
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~fEl~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gC~~~~~~lCpl~~F~~~~~~~i~ 391 (391)
T d1nt4a_ 321 VFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDADGFCPMDKFDSVLNEAVK 391 (391)
T ss_dssp EEEEEEETTTTEEEEEEEEEECCHHHHHHTCCCCSSSCCEEEECCBTTBCCCTTSCEEHHHHHHHHHHHCC
T ss_pred EEEEEECCCCCCCEEEEEEECCCCHHHCCCCCCCEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99998617888755999986376132035665430103774156479988999996689999999999739
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29477.90 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~ 80 (391)
T d1p3wa_ 1 KLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNL 80 (391)
T ss_dssp CCSEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHH
T ss_conf 97498537422679999999999999864665787316659999999999999999999739997819997988999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~ 160 (391)
T d1p3wa_ 81 AIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQ 160 (391)
T ss_dssp HHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBC
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHCCCCCEEEEEECCCCCCEEEC
T ss_conf 99642353057998899924654138999999997598899967887872768999975799948999978978881077
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~ 240 (391)
T d1p3wa_ 161 DIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRS 240 (391)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTSC
T ss_pred CHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHCCCCCCCCCCCCCCCCCC
T ss_conf 78999998555895799730122577564202104653212231005788559999855021156875468856667515
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 320 (391)
T d1p3wa_ 241 GTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLA 320 (391)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTSCHHHHHHHTTTEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCEEEEEEECCCCHHHHHHHHCCCE
T ss_conf 74023334453000467887766789999999999999877624806502444567518999857877699999718977
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 v~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~~~~~~~~~~ 391 (391)
T d1p3wa_ 321 VSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQ 391 (391)
T ss_dssp CBCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHCC
T ss_pred EECCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCC
T ss_conf 98262003776540599997399810069889996678899999999999999999999973967786329
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=100.00 E-value=0 Score=29477.08 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~ 80 (391)
T d1gpea1 1 YLPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTT 80 (391)
T ss_dssp CCCCCCCCCGGGSBCCGGGTTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTST
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHCCC
T ss_conf 98600145554112791212699664999896789999999998787982999837889888873040888998860897
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~dw~~~t~p~~~~r~~~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~ 160 (391)
T d1gpea1 81 VDQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAA 160 (391)
T ss_dssp TBCCEECCCCTTSCCCEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHH
T ss_pred CCCCCEEEECCCCCEEEECEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCC
T ss_conf 66683413567995741121112576551430378603522334410037998644320378888765315886011035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~r~s~a~~~~~p~ 240 (391)
T d1gpea1 161 GHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPN 240 (391)
T ss_dssp TCCCCGGGCCBSSSEEEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCC
T ss_conf 66766445678886432445565545789999999887548721201225765432222211320333442122025763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl~SGIGp~~~L~~~gI~~ 320 (391)
T d1gpea1 241 YQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQ 320 (391)
T ss_dssp TTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCC
T ss_pred CCCHHHHHHCCCEEEEEEEECCCCCCEEEEEEEECCCCEEEEEEECCEEEEECCHHCCHHHHHHCCCCCHHHHHHCCCCE
T ss_conf 22013443305325688650788874688658833897278998488799926120466899866797388998779988
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 v~dlP~Gvg~nl~dh~~~~v~~~~~v~~~~~l~~~~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (391)
T d1gpea1 321 LLDLPVGICSMMSRELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYAKSA 391 (391)
T ss_dssp SEECCTTCTCBSCGGGTCSBCTTCBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99897541215346766555034345477774331245686220432234443557666689998761249
|
| >d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 4-alpha-glucanotransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=29477.01 Aligned_cols=1 Identities=0% Similarity=-0.261 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~v~Yei~~~~F~d~~~dg~Gd~~gi~~kLdyl~~LGv~~I~l~Pi~~~~~~~GY~~~d~~~vd~~~Gt~~d~~~lv~~~h 80 (391)
T d1lwha2 1 MIGYQIYVRSFRDGNLDGVGDFRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFH 80 (391)
T ss_dssp CCEEEECGGGTCCSSSSSSCCHHHHHHTHHHHHHTTCSEEEECCCEECSSSSCCSCSEEEEECGGGCCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 97999815610588999860999999855999975999899797987999999785577874712399999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdln~~ 160 (391)
T d1lwha2 81 DSGIKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYD 160 (391)
T ss_dssp HTTCEEEEEECTTBCCTTSHHHHHHHTTCHHHHTTBCBCCTTCCTTCBCSSSCCBCEEECTTSCEEECTTCTTSCBBCTT
T ss_pred HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 35987844331013334444433223677655664200377545676546788754333677751236668867753433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 n~~v~~~i~~~~~~w~e~gvDGfR~Daa~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 240 (391)
T d1lwha2 161 NPQVFDEMKRLVLHLLDMGVDGFRFDAAKHMRDTIEQNVRFWKYFLSDLKGIFLAEIWAEARMVDEHGRIFGYMLNFDTS 240 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCEEEETTGGGSSSSHHHHHHHHHHHHTTCCSEEEECCCSCSSSHHHHHHHHEEEECHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEECCCHH
T ss_conf 41146899998888760699700105588877764211588999998765300255411200011034446731134178
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nhD~~~~~~~~~~~~~~~~~~a~~lllt~pG~P~IyyGdE~G~~~ 320 (391)
T d1lwha2 241 HCIKEAVWKENTRVLIESIERAVIAKDYLPVNFTSNHDMSRLASFEGGFSKEKIKLSISILFTLPGVPLVFYGDELGMKG 320 (391)
T ss_dssp HHHHHHHHHTCTHHHHHHHHHHTSSCSSEEEEESCCTTSCCGGGGGGCCCHHHHHHHHHHHTTSSSEEEEETTGGGTCCC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCHHCCCCC
T ss_conf 89999874034899999998631467765000001555543334123201567999999862689987886143027768
Q ss_pred ----------------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~~~~~~~r~pm~W~~~~~~~~~~~~~~~~~~~~~~~~nve~q~~~~~s~~~~~~~Li~lRk~~~al~r 391 (391)
T d1lwha2 321 VYQKPNTEVVLDPFPWNESMCVEGQTFWKWPAYNGPFSGISVEYQKRDPDSILSHTLGWTRFRKENQWIDR 391 (391)
T ss_dssp CCCSSCGGGGSCCCCSSTTSCSTTCCCSSCCSSCCSSSSCSHHHHTTCTTSHHHHHHHHHHHHHTCGGGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCHHHCC
T ss_conf 98899865311888878777788888887867897423117999875816899999999999813856239
|
| >d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Bacillus pasteurii [TaxId: 1474]
Probab=100.00 E-value=0 Score=29414.54 Aligned_cols=1 Identities=100% Similarity=1.101 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 GgiDtHvHfi~Pqq~~~al~sGiTT~~GgGtGpa~gt~att~tpG~~~i~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eq 80 (390)
T d4ubpc2 1 GGIDTHVHFINPDQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQ 80 (390)
T ss_dssp CEEEEEEECCCTTHHHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEECCCSSHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
T ss_conf 98220003348878999985697366468557777878745689888999999865527823115232666986799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 i~aGa~GlKiHEDwGatpa~id~~L~vad~~dvqv~iHtDtlNE~gfve~T~~a~~gRtiH~~HtEGaGGGHaPDii~~~ 160 (390)
T d4ubpc2 81 IDAGAAGLKIHEDWGATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLRAINGRVIHSFHVEGAGGGHAPDIMAMA 160 (390)
T ss_dssp HHHTCCEEEEEGGGCCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSSSTTTGGGGG
T ss_pred HHHHHHEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHC
T ss_conf 98655005013113647789999999864059268985387510101165899867962111467888889883268763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 g~~nvLpsSTnPT~Pyt~nt~~EhldM~MvcHhL~~~ipeDvafAesRiR~eTiaAEdvLHD~GaiSi~sSDsQaMGRvg 240 (390)
T d4ubpc2 161 GHPNVLPSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDILHDLGIISMMSTDALAMGRAG 240 (390)
T ss_dssp GSTTEEEBCCSTTSSCBTTHHHHHHHHHHHHHTCCTTSHHHHHHHHHHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCC
T ss_conf 77865578999887886672666367377641479888026777763033012326777652486444136753246400
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 Evi~Rtwq~A~kmk~qrG~l~~d~~~~DN~RvkRYiAKyTINPAIahGish~VGSvE~GKlADG~a~~~tsvtFVSqaAi 320 (390)
T d4ubpc2 241 EMVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADGDLIHDTNITFMSKSSI 320 (390)
T ss_dssp CHHHHHHHHHHHHHHHHCSCTTCCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCTTHHHHSCEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHH
T ss_conf 67776778898877751489875566777013202530246806750741125764678434876345764899858887
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 d~Gi~e~LGL~k~l~pVkn~R~ItKkDMk~Nda~P~IeVDPETYeV~aDGelltcePA~~LPLAQRYFLF 390 (390)
T d4ubpc2 321 QQGVPAKLGLKRRIGTVKNCRNIGKKDMKWNDVTTDIDINPETYEVKVDGEVLTCEPVKELPMAQRYFLF 390 (390)
T ss_dssp HTTHHHHHTCCSEEEECCCCSSCCGGGSTTCCCCCCCEECTTTCCEEETTEECCCCCBSCCSSSTTTCCC
T ss_pred HCCCHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCEEECCCCEEEEECCEEECCCCCCCCCCHHCCCCC
T ss_conf 5777677088644886058887786785015789983689986689889999046876756630120177
|
| >d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus, different strains [TaxId: 11520]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Influenza neuraminidase species: Influenza B virus, different strains [TaxId: 11520]
Probab=100.00 E-value=0 Score=29409.74 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~r~ge~~~n~~~lVtREPyVSC~p~eC~~FaL~QGt~l~~kHSNgTi~DRsp~RtL 80 (390)
T d1nsca_ 1 EPEWTYPRLSCQGSTFQKALLISPHRFGEARGNSAPLIIREPFIACGPKECKHFALTHYAAQPGGYYNGTREDRNKLRHL 80 (390)
T ss_dssp CCCCCCCCCBCSCSSEEEEEEECGGGGCCTTSCCCBEEEEEEEEEECSSCEEEEEEEEEEESSSSCCTTTTCSCCSSCEE
T ss_pred CCCCCCCCEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHEE
T ss_conf 97554451210452123420227210254446674069727601018430145862054111686668841456411201
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~s~~lG~~P~~~ns~f~~vaWSsssCHDGk~wl~i~vtG~d~nA~A~~~Y~g~~tdsI~SW~~nILRTQESeCvCinG~C 160 (390)
T d1nsca_ 81 ISVKLGKIPTVENSIFHMAAWSGSACHDGREWTYIGVDGPDSNALIKIKYGEAYTDTYHSYANNILRTQESACNCIGGDC 160 (390)
T ss_dssp EEEETTSCCBTTTCEEEEECSEEEEEECSSCEEEEEEESCGGGCEEEEEETTEEEEEEECSSSSCCEECSSCCEEETTEE
T ss_pred EECCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCEEEEEHHHHHHHHCCCCCCCEEEECCEE
T ss_conf 22326799965663379987652433688724899878698872899998999964055334310200432048989989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~vvMTDGpA~~~A~~ki~~i~eGkIi~~~~l~g~~~HiEECSC~Yp~~~~V~CVCRDNW~GsNRPvv~in~~~~s~~~gY 240 (390)
T d1nsca_ 161 YLMITDGSASGISKCRFLKIREGRIIKEIFPTGRVEHTEECTCGFASNKTIECACRDNSYTAKRPFVKLNVETDTAEIRL 240 (390)
T ss_dssp EEEEEEECTTSCEEEEEEEEETTEEEEEECCEESCSBCEEEEEEESSSSEEEEEEECSSSCSSCEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEE
T ss_conf 99992688778542589998456288776058886724752115899881699970788888998499545534145315
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 vCSGl~~DTPR~~D~s~tg~C~~n~~~G~~GVKGgf~~~~~~~~~~vW~GRTiS~~SRSGfE~~kV~~gw~~~~s~~~~~ 320 (390)
T d1nsca_ 241 MCTETYLDTPRPDDGSITGPCESNGDKGRGGIKGGFVHQRMASKIGRWYSRTMSKTERMGMELYVRYDGDPWTDSDALAH 320 (390)
T ss_dssp CCCSSCCSSSCCCTTCCCSSTTCCCSCCSSCCCCCEEEEECSSCEEEEEEECSSSSSSEEEEEEEEESSCTTTCCCCCEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCEEE
T ss_conf 85366578999888887767888876888863565011012468874764420476667507999778987768620005
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~q~iV~~~n~sgYSg~F~~~~k~C~~pCF~VElIRGrp~e~WTSnS~vvfCg~~s~~~~wswpDGA~i~l 390 (390)
T d1nsca_ 321 SGVMVSMKEPGWYSFGFEIKDKKCDVPCIGIEMVHDGGKKTWHSAATAIYCLMGSGQLLWDTVTGVDMAL 390 (390)
T ss_dssp EEEEEEEEEECCCEEEEEEECSSSEEEEEEEEEEECCCTTSCCEEEEEEEEECSSSCCCCCCCCCCCTTC
T ss_pred EEEEEECCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCEECCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 7899953788862178998589853022899997288766501375699972589977866998656689
|
| >d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphoglycerate kinase superfamily: Phosphoglycerate kinase family: Phosphoglycerate kinase domain: Phosphoglycerate kinase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29409.40 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 mktl~d~~~~~k~Vl~R~D~NvPi~~g~i~d~~RI~~~~pTI~~l~~~~akvii~SH~GRPkg~~~~~Sl~~v~~~l~~~ 80 (390)
T d1v6sa_ 1 MRTLLDLDPKGKRVLVRVDYNVPVQDGKVQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDPKYSLAPVGEALRAH 80 (390)
T ss_dssp CCBGGGSCCTTCEEEEECCCCCCEETTEESCCHHHHHHHHHHHHHHHTTCEEEEECCCSCCSSCCGGGCSHHHHHHHHHH
T ss_pred CCCHHHCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 97412258789999999403777559908976899999999999997899899995589999989761379999999752
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 l~~~v~~~~~~~~~~~~~~~~~l~~g~i~lLENvRF~~~E~~nd~~f~~~La~l~DiyVNDAF~~aHR~haS~vgi~~~l 160 (390)
T d1v6sa_ 81 LPEARFAPFPPGSEEARREAEALRPGEVLLLENVRFEPGEEKNDPELSARYARLGEAFVLDAFGSAHRAHASVVGVARLL 160 (390)
T ss_dssp CTTEEECCSCTTSHHHHHHHHTCCTTCEEECSCGGGSTTTTTTCHHHHHHHGGGCSEEEECCGGGTTSCCCCCCCGGGTS
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHCCCCCCCHHHH
T ss_conf 46532653101122122222346665378651123245521165277776652476589631466665056622501333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ps~aG~l~ekEi~~L~~~l~~~~rP~vaIlGGaKvsdKi~~i~~l~~k~D~iiigG~mAntFL~a~G~~IG~sl~e~~~~ 240 (390)
T d1v6sa_ 161 PAYAGFLMEKEVRALSRLLKDPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRL 240 (390)
T ss_dssp CEEECHHHHHHHHHHHTTTSSCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEECSTTHHHHHHHTTCBCTTCCCCGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 45668999999999999985446750899834640236999999997525666644177999997597668634431146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~a~~~~~~i~lp~dv~~~~~~~~~~~~~~~~~~~i~~~~~ilDIG~~Ti~~~~~~I~~aktI~WNGPmGvfE 320 (390)
T d1v6sa_ 241 DLAKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFARALEGARTVFWNGPMGVFE 320 (390)
T ss_dssp HHHHHHHHHHHHHTCEEECCSEEEEESSCCTTCCCEEEETTBCCTTCEEEEECHHHHHHHHHHTTTCSEEEEESCSSCTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 66676777654302333333211220123677532356433310024432000134677887750264489975644502
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~F~~GT~~i~~aia~~~~a~sIiGGGdT~aai~~~g~~~~fshVSTGGGA~Le~L~G~~LPgi~aL~~ 390 (390)
T d1v6sa_ 321 VPPFDEGTLAVGQAIAALEGAFTVVGGGDSVAAVNRLGLKERFGHVSTGGGASLEFLEKGTLPGLEVLEG 390 (390)
T ss_dssp STTTTHHHHHHHHHHHTCSSCEEEEESHHHHHHHHTTTCGGGSSEECCSSSHHHHHHHHSCCHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCCCEEECCHHHHHHHHCCCCCCCHHHHCC
T ss_conf 5743079999999998558997999488999999974986787179577899999977999642143159
|
| >d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=29406.80 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~~grpTPL~~~~~Ls~~lg~~IylK~E~ln 80 (390)
T d1qopb_ 1 TTLLNPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLL 80 (390)
T ss_dssp CCSSCCEETTEEEEESCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHTTSSEEEEEEEGGGS
T ss_pred CCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHEHHHHHHHHCCEEEEEEECCC
T ss_conf 98777865683999687888999999999999997397899999999874489996553758654535977999971487
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ptGS~K~R~a~~~i~~A~~~G~~~iv~easaGN~g~a~A~aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~v~~ 160 (390)
T d1qopb_ 81 HGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHS 160 (390)
T ss_dssp TTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf 44656604899999987543873023103477899999999985367459963320011235888999865966999527
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~G~~ 240 (390)
T d1qopb_ 161 GSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMF 240 (390)
T ss_dssp TTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHEE
T ss_conf 85136676999999976333555530343234334654110156655012389999970986306886235410111100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~f~~~~~~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~~~~~~~~~~~g~~~~~~s~a~gl~~~~~~~~~~~l~~~g~ 320 (390)
T d1qopb_ 241 ADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGR 320 (390)
T ss_dssp GGGTTCTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTS
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 11004663248613566356565444551035744554112454113688864443222455334662067899986286
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~vtD~Ea~~a~~~La~~EGI~~a~Esa~Ava~Ai~~a~~~~~~~~~VVv~lsG~G~kD~~~~~~~l 390 (390)
T d1qopb_ 321 ADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTVHDIL 390 (390)
T ss_dssp SEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHHSTTSCEEEEEEECBBCGGGHHHHHHHC
T ss_pred EEEEEECHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHC
T ss_conf 3999999999999999999966984168269999999998635579998899997889734799999639
|
| >d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Hypothetical oxidoreductase yqhD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29404.07 Aligned_cols=1 Identities=0% Similarity=0.537 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~m~~f~f~~P~~I~fG~g~l~~l~~~~~~~~~vliV~~~~~~~~~g~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~ 80 (390)
T d1oj7a_ 1 KAGLNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNA 80 (390)
T ss_dssp CBCCCCEEEEEEEEEEESTTGGGGHHHHSCTTCEEEEEECSSHHHHHSHHHHHHHHTTTSEEEEECCCCSSCBHHHHHHH
T ss_pred CCCCCCCEEECCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 99888808748986898569999999998679988999897168774399999997189947999282379999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagtgse~t~~avi~~~~~ 160 (390)
T d1oj7a_ 81 VKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTT 160 (390)
T ss_dssp HHHHHHHTCCEEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSCGGGSSEEEEEETTT
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99976337877985478854408999999751874300344312466433467873335665443111243101124443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~k~~~~~~~~~P~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~~~~~~~~~~~a~~~~~~~~~~l~~a~~~~~d 240 (390)
T d1oj7a_ 161 GDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIHDRFAEGILLTLIEDGPKALKEPEN 240 (390)
T ss_dssp TEEEEEECGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHHHHHSSSCBCCHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCEECCCHHHCCCCEEEEHHHHCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCC
T ss_conf 11000110000145046514430369744430322558888889871775321230367765555530134777760446
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~ar~~l~~as~~a~~~~~~~g~~~~g~~Hal~h~l~~~~~v~HG~~~ai~lp~v~~~~~~~~~~~~~~~a~~~~~~~~~ 320 (390)
T d1oj7a_ 241 YDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEG 320 (390)
T ss_dssp HHHHHHHHHHHHHHSSSTTTTTSCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999888888998865540486666531344334310268765311233221332001111599999999995485469
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~e~~~~~i~~i~~~~~~lglP~~L~e~Gv~~~~i~~la~~~~~~~~~~~~np~~l~~d~i~~il~~A~ 390 (390)
T d1oj7a_ 321 SDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR 390 (390)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCCSGGGGTCCSTTHHHHHHHHHHTTCSSBTTTTCBCHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf 9699999999999999998498999899199999999999999863555309997899999999999509
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=100.00 E-value=0 Score=29402.83 Aligned_cols=1 Identities=0% Similarity=0.305 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~i~~kLdyLk~LGvt~I~l~Pi~~~~~~~~~gY~~~d~~~~~~~~~~~~vd~~~Gt~ 80 (390)
T d1ud2a2 1 DGLNGTMMQYYEWHLENDGQHWNRLHDDAAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTK 80 (390)
T ss_dssp CCCCCCEEECCCTTCCCSSCHHHHHHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCH
T ss_pred CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 99777699844057788897799999979999976998899697803888889998866774445554457768889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~efk~lV~~~H~~GI~VilDvV~NHt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (390)
T d1ud2a2 81 AQLERAIGSLKSNDINVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFKWRWFHF 160 (390)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSEECCCSEEEEEEEEEEETTEEEEECSCCEEEEEEEEBCCGGGTTSSCCCCBCGGGE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999998558813898714554676630344420268654332345543445554556776677678776543445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~dg~r~D~~~~~~~~~ 240 (390)
T d1ud2a2 161 NGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLGSNIDFSHPEVQDELKDWGSWFTDELDLDGYRLDAIKHIPFWY 240 (390)
T ss_dssp EEEEEETTTTEEEEEEETTCCCCSSCCCTTSCCCCCSSEEECTTSHHHHHHHHHHHHHHHHHHTCSEEEETTGGGSCHHH
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCHHHCCHHH
T ss_conf 78876655777751211687655555422222222334410004889999988765301210124653334320067677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (390)
T d1ud2a2 241 TSDWVRHQRNEADQDLFVVGEYWKDDVGALEFYLDEMNWEMSLFDVPLNYNFYRASQQGGSYDMRNILRGSLVEAHPMHA 320 (390)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCCCSCHHHHHHHHHHTTTCSEEECHHHHHHHHHHHHHCTTSCGGGTTTTCHHHHCGGGE
T ss_pred HHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCE
T ss_conf 88888887643202103411124786110101245432333203678889999875134469999987533033783326
Q ss_pred ---------------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 v~fl~nHD~~r~~~~~~~~~~~~~~~~~~~il~~~pG~P~iy~GdE~G~~~~~~~~~~d~i~~l~~~R~~ 390 (390)
T d1ud2a2 321 VTFVDNHDTQPGESLESWVADWFKPLAYATILTREGGYPNVFYGDYYGIPNDNISAKKDMIDELLDARQN 390 (390)
T ss_dssp EECSCCTTTSTTSTTCCCCCTTTHHHHHHHHHSSSSSEEEEEHHHHHCBGGGTBCCCHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 8870277665400013675789999999999985799849974265097998985126888999997389
|
| >d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=0 Score=29337.83 Aligned_cols=1 Identities=100% Similarity=1.101 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 GiDtHvHfi~Pqq~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~i~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eqi 80 (389)
T d1e9yb2 1 GIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQI 80 (389)
T ss_dssp EEEEEEETTCTTHHHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 95545334488789999856870774586588877776552797608999998600377253662116779837899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~aGa~GlKiHEDwGatp~~Id~~L~vad~~dvqv~iHtDtlNE~Gfve~T~~a~~gRtiH~~HtEGaGGGHAPDii~~~~ 160 (389)
T d1e9yb2 81 EAGAIGFKIHEDWGTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAG 160 (389)
T ss_dssp HTTCSEEEECGGGCCCHHHHHHHHHHHHHTTCEEEECCCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSCSTTTGGGGGG
T ss_pred HHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHCC
T ss_conf 72303220231026787888899998775095389438976654303648998679752003137777777617888705
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~nvLpsSTnPT~Pyt~nt~~EhldMlmvcHhL~~~ipeDvafAesRiR~eTIaAEdvLhD~GaiSi~sSDsqaMGRvgE 240 (389)
T d1e9yb2 161 EHNILPASTNPTIPFTVNTEAEHMDMLMVCHHKDKSIKEDVQFADSRIRPQTIAAEDTLHDMGAFSITSSDSQAMGRVGE 240 (389)
T ss_dssp STTEEEEECGGGCSCBTTHHHHHHHHHHHTTTCCSSCHHHHHHHHHHCCHHHHHHHHHHHHTTSCCEECCCTTSSCCTTS
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHCHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHH
T ss_conf 77766788999878666628886345241034798980267777630330223367776336854531366644443677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 vi~RtwQtA~kmk~~rG~l~~d~~~~DN~RvkRYiAKYTINPAIahGis~~VGSvE~GK~a~G~A~~~tSvtFVSqaAid 320 (389)
T d1e9yb2 241 VITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVHHGKAKYDANITFVSQAAYD 320 (389)
T ss_dssp HHHHHHHHHHHHHHHHCSCSSCCSSSCHHHHHHHHGGGTHHHHHHTTCTTTSSSSCTTSBGSTTHHHHHCEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHH
T ss_conf 89999998999998863687667776427777666650568577558211048625366135867665635886688875
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~Gi~~~LGL~K~l~pVkn~R~ItK~DM~~Nda~P~IeVDPETYeV~aDGelltcePA~~LPLAQRYFLF 389 (389)
T d1e9yb2 321 KGIKEELGLERQVLPVKNCRNVTKKDMQFNNTTAHIEVNPETYHVFVDGKEVTSKPANKVSLAQLFSIF 389 (389)
T ss_dssp TTHHHHTTCCSEEEECCCCSSCCGGGSTTCCCCCCEEECTTTCCEEETTEECCCCCBSCCSSSTTTCCC
T ss_pred CCCHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCEEECCCCEEEEECCEECCCCCCCCCCCHHCCCCC
T ss_conf 787677387752786138887887785115789982689997689889999135765657630110177
|
| >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: Lesion bypass DNA polymerase (Y-family), catalytic domain domain: DNA polymerase eta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29327.72 Aligned_cols=1 Identities=0% Similarity=-0.261 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~vI~hiDmD~FyAsvE~~~~p~l~~~Pv~V~q~~~via~sYeAR~~GVk~gm~~~eA 80 (389)
T d1jiha2 1 MSKFTWKELIQLGSPSKAYESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWNSIIAVSYAARKYGISRMDTIQEA 80 (389)
T ss_dssp CCSSBHHHHHGGGCTTTGGGSTTCCEEEEECTTHHHHHHHHHTTCCTTSCEEEEETTEEEEECHHHHTTTCCTTSCHHHH
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCEEEEECCEEEEECHHHHHHCCCCCCCHHHH
T ss_conf 98413645877279752236877679997365089989967563526997799008869998999997199878929999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~k~CP~li~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~Yr~~S~~v~~il~~~~~~vE~~SIDEaflD 160 (389)
T d1jiha2 81 LKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRESRKALKIFKSACDLVERASIDEVFLD 160 (389)
T ss_dssp HHHCTTCEEEECCEEETTCSSEECCTTCSTTCSCTTSCCCSSSEEECCHHHHHHHHHHHHHHHHHCSCEEEEETTEEEEE
T ss_pred HHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEE
T ss_conf 98697636852121234444333344320001331001465326898899999999999999986888057416637897
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 lT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 240 (389)
T d1jiha2 161 LGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVILAL 240 (389)
T ss_dssp CHHHHHHHHHHCCSCBSSSSCBHHHHTHHHHHHHHHCCSCTTSBCCCCCGGGGGCCCCSEECCTTCCCSCCSHHHHHHHH
T ss_pred CCHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 50023220355431000122112332212345433332233234456642111222244433433344444356654028
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 g~~ia~~IR~~I~~etGlt~S~GIa~NK~LAKlAs~~~KPngqtvl~~~~v~~fl~~~~lpi~ki~GIG~k~~kkL~~~l 320 (389)
T d1jiha2 241 GSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELIDVL 320 (389)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEEEESSHHHHHHHHTTTCSSCEEECCGGGHHHHHTSSSCCGGGSGGGSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999999999869984302455289999988744988558667899999997267872020787889999999984
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 gi~t~~di~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~f~l~Rg~~~~pv~~r 389 (389)
T d1jiha2 321 DLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSR 389 (389)
T ss_dssp TCCSSSHHHHHHHHSCSCHHHHHHHHHHHHTSTTCCTTTCSSCTTCHHHHHHHHHHHTTTCCCCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 897613399987653688999855000655541068776555753244248888644147638888889
|
| >d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Dehydroquinate synthase, DHQS domain: Dehydroquinate synthase, DHQS species: Aspergillus nidulans [TaxId: 162425]
Probab=100.00 E-value=0 Score=29326.67 Aligned_cols=1 Identities=0% Similarity=-0.659 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
+
T Consensus 1 p~~i~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ivtD~~v~~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~~gE~~ 80 (389)
T d1sg6a_ 1 PTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVS 80 (389)
T ss_dssp CEEEEETTEEEEEEETTHHHHTHHHHHHHHSCCSEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGG
T ss_pred CCEEEECCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
T ss_conf 91688769731898888078775999984179981899978965898999999999870742146762489981698452
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 Ks~~~~~~i~~~~~~~~~~~~r~d~IiaiGGG~v~D~ak~~A~~y~rgi~~i~vPTtlla~~Das~g~k~~in~~~~kn~ 160 (389)
T d1sg6a_ 81 KSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNL 160 (389)
T ss_dssp SSHHHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHGGGCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHCCCCCCCCCEEEECCCCCCCE
T ss_conf 89999999999999628876777569996563477889999999855876367314021256653232134211366421
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~g~~~~P~~V~iD~~~l~tlP~r~~~aG~~e~ik~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~I 240 (389)
T d1sg6a_ 161 IGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILKARI 240 (389)
T ss_dssp EEEECCCSEEEEEGGGGGTSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCCCCTTSCTTGGGHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHH
T ss_conf 21012045552005554341799998634235553212687888899986999987544201201322104699999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~s~~~k~~iv~~d~~e~g~r~~ln~GHt~~HAlE~~~~~~~lHGEaVaiGml~~~~ls~~~g~l~~~~~~~i~~~l~~l 320 (389)
T d1sg6a_ 241 LASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAY 320 (389)
T ss_dssp HHHHHHHHHHHHC-----CGGGGGGTTHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 99999863202333443263310135466788887632234568889998899999999993799999999999999986
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 gLPt~l~dl~~~~~~~~~~~~~~~l~~~~~~DKK~~~~~i~~vl~~~iG~~~~~~~~~~~~~~i~~~L~ 389 (389)
T d1sg6a_ 321 GLPTSLKDARIRKLTAGKHCSVDQLMFNMALDKKNDGPKKKIVLLSAIGTPYETRASVVANEDIRVVLA 389 (389)
T ss_dssp TCCCSTTCHHHHHHTTTCCCCHHHHHHHHHTCCE-------ECCEEETTEESSSSCEECCHHHHHHHCC
T ss_pred CCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEECCCCCCHHHHHHHHC
T ss_conf 999654344200013434599999999986378857997899967457767663277599899999739
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=29325.89 Aligned_cols=1 Identities=0% Similarity=-1.690 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~r~~~~~~~~i~~l~~~a~~~~~~g~~vi~l~~G~p~~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~ 80 (389)
T d2gb3a1 1 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRR 80 (389)
T ss_dssp CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCCCSCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 97456348987788899999999976998888989989999889999999850777778899868999999999998886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (389)
T d2gb3a1 81 QRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERT 160 (389)
T ss_dssp SCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTE
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 39876552699625543221222112235798688707987433432113686321232222355420245554215674
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~ 240 (389)
T d2gb3a1 161 KGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGC 240 (389)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEE
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 07984798766443210899999984234499999994131002323322222222223443345565334576563132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~l 320 (389)
T d2gb3a1 241 LITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAEL 320 (389)
T ss_dssp EECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEEC
T ss_pred EECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEC
T ss_conf 51100268998766420122223222222222322320002232333321002344445430463236999558999958
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 p~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~L~~~lk~f~~ 389 (389)
T d2gb3a1 321 PVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFCS 389 (389)
T ss_dssp SSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999986006329789994750146888889989999728999999999999999999619
|
| >d2o3ia1 e.73.1.1 (A:2-390) Hypothetical protein CV3147 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: CV3147-like superfamily: CV3147-like family: CV3147-like domain: Hypothetical protein CV3147 species: Chromobacterium violaceum [TaxId: 536]
Probab=100.00 E-value=0 Score=29320.78 Aligned_cols=1 Identities=0% Similarity=0.338 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~Ls~~Dl~~i~~Ga~iLGtGGGGdp~~~~~l~~~~~~~~~~~~~~V~li~~del~D~~~V~v~~mGAPtv~~E~~~~~ 80 (389)
T d2o3ia1 1 AFELSPSDLEPLLQGACFFGSGGGGTMISARHLAANFRKGDYYPTDKVRVVDVDEATDGDCVMVAYMGAPDAINQVQWPN 80 (389)
T ss_dssp CEEECGGGHHHHHHHHHHTTTTCSCCHHHHHHHHTTCSBTTTBSCSCEEEECGGGCCSSEEEEEEEEECHHHHTTCSSCH
T ss_pred CCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCEEEEEEEECCHHHHEECCCC
T ss_conf 93757999999851459997278876688999999986642257996699535336888899997640787883405799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~e~~~a~~~l~~~~g~~~~av~~~EiGG~Ns~~pl~~AA~~glPvVDaD~mGRAfPelqm~t~~i~G~~~~P~~lad~ 160 (389)
T d2o3ia1 81 GPVEAALAARQRLESQGRKLAYVVAPESGALGFVVASLVAAKLGLAVVDADGAGRAVPSLPMLTYAAAGVPPTPAFLAGE 160 (389)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHTCEEESBCSSSSCCSSGGGSHHHHTTCCCCSEEEECS
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCHHHEEHEECCCCCCCEEEECC
T ss_conf 75799999999999719975799951668722789999999719988747875456774322000105899887699728
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~Gn~~i~~~~~~~~~~~~~e~~~~~~e~~~R~~~~~~~~Gg~~~~a~~pm~~~~~~~~~~I~gTlS~A~~iGrav~~ar~ 240 (389)
T d2o3ia1 161 SGLCVELGVRMPPPDGQRREDISTVVEQMLRPILTNPQFGQFGGLAMWMMSPAQLGGALPVRGTLSRALKLGRALQDGKV 240 (389)
T ss_dssp SSCEEEEEEECCCCC---CCCHHHHHHHHHHHHTTSTTTCSEEEEEEEEECHHHHHHHCCSBSHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99779984023555412577899999998877766875174347862659989983201168559999999899998664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~l~~~~~~~g~~~l~~Gki~~v~r~~~~Gf~~G~v~ieg~~~~~~i~fqNE~L~a~~~g~~~~la~vPDLI~ 320 (389)
T d2o3ia1 241 KTAEAMLDFLRRELDIKGKLLFGPATLASPEVSTAGGFDLGKVVLEDGERRCTVLYQNESLLAWDSALSHPLATAPDAIS 320 (389)
T ss_dssp CSHHHHHHHHHHHHCCCCEEEEEEEEECCC----------CEEEEESSSCEEEEEESSSEEEEEETTCSSCSEETTSEEE
T ss_pred CCCCHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEECCCEEEEEEEEECEEEEEECCCCCEEEECCCEEE
T ss_conf 24327999998732667868999689997799705871789999907985899999814189998798978997796799
Q ss_pred --------------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~lD~~tG~pitte~~~~~~~~g~~~~ryG~~V~Vi~~pa~~~wrt~~~l~~~GP~~~~fGy~~~y~P~e 389 (389)
T d2o3ia1 321 YFVEGEGQHVFSNGDLSGNDHGLDPSVRGRKAAVIALPAAAPLSEGLILQSFADELAQLGYLGPYAPVD 389 (389)
T ss_dssp EEECSSSCCCCCHHHHBCSSSSBCTTTTTSEEEEEEECCCGGGSSHHHHHHHHHHHHHTTCCSCCCCCC
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCHHHHHHCCCHHHHCCCCCCCCCCC
T ss_conf 986688864423332345556654234798899999609827486333655095055359997765288
|
| >d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Influenza neuraminidase species: Influenza A virus, different strains [TaxId: 11320]
Probab=100.00 E-value=0 Score=29259.80 Aligned_cols=1 Identities=0% Similarity=-1.024 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~n~~kplC~i~G~a~~sKDN~IRig~~g~i~V~REPyVSC~p~eC~~FaL~QGa~l~~kHSNgTi~DRsp~RtL~s~ 80 (388)
T d1f8ea_ 1 RDFNNLTKGLCTINSWHIYGKDNAVRIGEDSDVLVTREPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRALISW 80 (388)
T ss_dssp CCCCCCCCEECCCSEEEEEEECCHHHHHTTSCBEEEEEEEEEEETTEEEEEEEEEEEESSSGGGTTTTCSCCTTCEEEEE
T ss_pred CCHHHCCCCCCCCCCEEEEECCCCEEECCCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHEEEEC
T ss_conf 94011376666433146661477168638987899826512028202034762043101786668841566510113441
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~lG~~p~~~ns~f~~vaWSsssCHDGk~Wl~i~vtG~D~nA~A~~~Y~g~~tdti~SW~~nILRTQESeCvCinG~C~vv 160 (388)
T d1f8ea_ 81 PLSSPPTVYNSRVECIGWSSTSCHDGKTRMSICISGPNNNASAVIWYNRRPVTEINTWARNILRTQESECVCHNGVCPVV 160 (388)
T ss_dssp ETTSCCBTTTCEEEEESSEEEEEECSSSEEEEEEESCTTSCEEEEEETTEEEEEEECSSSSCCBCCSSCCCCBTTEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEECCEEEEHHHHHHHHHCCCCCCCEEEECCEEEEE
T ss_conf 26899966774589998643444689724899878798883799998999963265444311100322048989988999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 mTDG~A~~~A~~ri~~i~eGkIik~~~l~g~~~HiEECSCYp~~~~V~CvCRDNW~GsNRP~v~in~~~~~~~~~YvCsg 240 (388)
T d1f8ea_ 161 FTDGSATGPAETRIYYFKEGKILKWEPLAGTAKHIEECSCYGERAEITCTCRDNWQGSNRPVIRIDPVAMTHTSQYICSP 240 (388)
T ss_dssp EEEECSSSCEEEEEEEEETTEEEEEEECCSSCCCCEEEEEEEETTEEEEEEECCSSCSSCEEEEEETTTTEEEEEECCCS
T ss_pred EECCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEEEECC
T ss_conf 92688778631589998566388876169886731763422899946999706888888975995455431443278646
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~DTPR~~D~s~g~C~~p~~~~g~~GVKGf~f~~G~~vW~GRTiS~~sRsGfE~~~v~~gwt~~~s~~~~~q~iv~n~n 320 (388)
T d1f8ea_ 241 VLTDNPRPNDPTVGKCNDPYPGNNNNGVKGFSYLDGVNTWLGRTISIASRSGYEMLKVPNALTDDKSKPTQGQTIVLNTD 320 (388)
T ss_dssp SCCSSSCCCCCSSCCSSSCCCSCCSCCCCCCEECCTTSCEEEECSCSSSSEEEEEEECTTTTTCTTCCCSEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCHHHHCCEEEEECCC
T ss_conf 44789998988866478987778888734314766897687664247667761699934875276603204228996587
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 wSGYSGsF~~~~~~~~C~~pCFyVElIRGrp~E~~v~WTSnSiv~fCG~~~~~g~~swpDGA~i~ff~ 388 (388)
T d1f8ea_ 321 WSGYSGSFMDYWAEGECYRACFYVELIRGRPKEDKVWWTSNSIVSMCSSTEFLGQWDWPDGAKIEYFL 388 (388)
T ss_dssp ECCCEEEECCTTCSSSEECCEEEEEEEEETTTCTTSSCEEEEEEEEEEESSCCCCCCCCCCCCGGGGC
T ss_pred CCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 77561771234348873011489999618876563467407779993679986786689865465559
|
| >d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Vacuolar ATP synthase subunit C superfamily: Vacuolar ATP synthase subunit C family: Vacuolar ATP synthase subunit C domain: Vacuolar ATP synthase subunit C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29257.18 Aligned_cols=1 Identities=0% Similarity=-2.154 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~y~lvSlP~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~f~IP~lKvGTLDsLv~lsDeL~KlD~~ve~vv~Kv~~ 80 (388)
T d1u7la_ 1 LYTANDFILISLPQNAQPVTAPGSKTDSWFNETLIGGRAFVSDFKIPEFKIGSLDTLIVESEELSKVDNQIGASIGKIIE 80 (388)
T ss_dssp CCCCCEEEEEEEETTCCCTTSTTCCHHHHHHHTGGGGTSEEEECCCCCCBCSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97565069998778788889850468999985225887236304798777135999998788888788899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~l~~~~~~~~~~l~v~~~~~~~yl~~F~Wd~aKyp~~~~l~elv~~i~~~~~~id~dlk~k~~~Yn~~K~~l~~~~R 160 (388)
T d1u7la_ 81 ILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAER 160 (388)
T ss_dssp HHHHTTSSCSSSCCSCCBTTBCHHHHHHTCCCCTTTSCTTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHEEEECCCCHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987236110321676878138987564460444288889899999999999998889999999999999999998740
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 K~~G~L~~r~L~diV~~ed~V~dSEyLtTllVvVPk~~~~dwl~~YEtL~~~VVPrSs~~i~~D~e~~L~~VtlFkk~~~ 240 (388)
T d1u7la_ 161 KKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVIAEDAEYVLFNVHLFKKNVQ 240 (388)
T ss_dssp HTCSCTTTSCCTTTCCGGGSCCSCSSEEEEEEEEEGGGHHHHHHHGGGSSTTBCTTCCEEEEECSSEEEEEEEEEGGGHH
T ss_pred CCCCCEEECCHHHHCCHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHCEECCCEEEEEEEEEHHHHH
T ss_conf 04785262427752798872553314058999961531788999986325762687155302568805899999723199
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 eF~~~aRE~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~~wiHiKalRvFVESVLRYGLP~~ 320 (388)
T d1u7la_ 241 EFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPH 320 (388)
T ss_dssp HHHHHHHHTTCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999997594304266797899999999999999999999999999999999999999998568766433453589834
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 F~~~li~p~~k~~kklr~~L~~~f~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ey~PyV~~~i~l 388 (388)
T d1u7la_ 321 FNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKINKQDTSLHQYASLVDTEYEPFVMYIINL 388 (388)
T ss_dssp EEEEEEEECTTCHHHHHHHHHHHHGGGGCTTCC------------------------CCSSEEEEEEC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf 13899950872589999999998634265300234446667776543212335677515549998349
|
| >d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=29255.37 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 lR~tT~GESHG~aig~vIdG~PaGl~i~~~~I~~~L~RR~pG~~~~~t~R~E~D~v~ilSGv~~G~TtG~PI~~~I~N~D 80 (388)
T d1qxoa_ 1 MRYLTAGESHGPRLTAIIEGIPAGLPLTAEDINEDLRRRQGGYGRGGRMKIENDQVVFTSGVRHGKTTGAPITMDVINKD 80 (388)
T ss_dssp CEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHHHCSTTCCTHHHHCCCCCEEEESEETTEECSSCEEEEEECGG
T ss_pred CCEEECCCCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCEEEEEECCC
T ss_conf 95541313688834899816186887499999999955798999997668999827994644389806774499998787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~PRPGHAD~~~~~Kyg~~d~r~gggRsSaReTa~rVAaGaiAk~~L~~~gI~v~s~ 160 (388)
T d1qxoa_ 81 HQKWLDIMSAEDIEDRLKSKRKITHPRPGHADLVGGIKYRFDDLRNSLERSSARETTMRVAVGAVAKRLLAELDMEIANH 160 (388)
T ss_dssp GGGGTTTTCSSCCCGGGTTTTCCCSCCTTSSHHHHHHHHTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 77754444411123455432012457888435789987478656687751688999999999999999999819735235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 v~~IG~i~~~~~~~~~~~~~~~~~~~~~~~c~d~~~~~~m~~~I~~ar~~gDSlGG~ve~~~~gvP~GLG~pv~~d~kLd 240 (388)
T d1qxoa_ 161 VVVFGGKEIDVPENLTVAEIKQRAAQSEVSIVNQEREQEIKDYIDQIKRDGDTIGGVVETVVGGVPVGLGSYVQWDRKLD 240 (388)
T ss_dssp EEEETTEECCCCSSCCHHHHHHHHHTSTTCCSCGGGHHHHHHHHHHHHHTTCCBCEEEEEEEESCCTTCSCSSSGGGCHH
T ss_pred EEEECCEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 68741320267443687888764311556467868855668889999853887676399999717833368866776541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 a~La~AlmSIpAvKgvEfG~GF~~a~~~GSe~nD~~~~~~~~~~~~~tN~~GGi~GGISnG~pI~~rva~KPtsSI~~~q 320 (388)
T d1qxoa_ 241 ARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSKEDGYTRRTNNLGGFEGGMTNGQPIVVRGVMKPIPTLYKPL 320 (388)
T ss_dssp HHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTSCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEECCCSCCSSCE
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 89998774243113453056488897421455650100466784113688762016777788769999957865567755
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~Tvd~~~~e~~~~~~gRhDpCivpRAvpV~EAm~alvLad~~L~k~g~d~l~~~~~~~~~y~~~~~~~ 388 (388)
T d1qxoa_ 321 MSVDIETHEPYKATVERSDPTALPAAGMVMEAVVATVLAQEILEKFSSDNLEELKEAVAKHRDYTKNY 388 (388)
T ss_dssp EEECTTTCCEEEECCSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHSCCSBHHHHHHHHHHHHHHHHTC
T ss_pred CCEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 53566898067246898897075532899999999999999999857775999999999999998519
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29253.87 Aligned_cols=1 Identities=100% Similarity=2.364 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 gll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80 (388)
T ss_dssp CCCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 96999999998699999999999999868998999999999999869999999999999985999899999999996420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 00222222222121122222222222222222222222222221112222222222222222222110001356788887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 240 (388)
T d1w3ba_ 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 40258610689986363010247199999999999984946499999971552200529999999998577755479999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999878999999999999984999899999999999974879999999986540487300101579999998789
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------~ 1082 (1223)
=
T Consensus 321 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999999986889899999999999985999999999999997099989999999999998589
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=100.00 E-value=0 Score=29252.44 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~PGP~~~~~~V~~Am~~~~~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a 80 (388)
T d2ch1a1 1 KFTPPPASLRNPLIIPEKIMMGPGPSNCSKRVLTAMTNTVLSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAG 80 (388)
T ss_dssp CCCCCCGGGSSCCCCCCCBCCSSSSCCCCHHHHHHTTSCCCCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHH
T ss_pred CCCCCCHHHCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHH
T ss_conf 98999634437668885540108998889999997476778878899999999999999999689997199976848999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~ 160 (388)
T d2ch1a1 81 MEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP 160 (388)
T ss_dssp HHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCC
T ss_conf 99999974211133333222310000033443311332123565445521012344430478633565302222322211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
T d2ch1a1 161 LEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLL 240 (388)
T ss_dssp CTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHH
T ss_pred HHHHCCHHCCCCCEEEEEEEECCCCCCCCHHCCCCEEEEECCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 12200000146540366532102346621230576399982655457887289972427788754202575531025603
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~ 320 (388)
T d2ch1a1 241 LLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIM 320 (388)
T ss_dssp HHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEE
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCEEEEEE
T ss_conf 55543023320025576532778999999999998766677898887777877766553022323689788098489998
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~p~g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~~~~~~ 388 (388)
T d2ch1a1 321 IPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHPDYIF 388 (388)
T ss_dssp CCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999998513998996788655698899717717899999999999999999961986589
|
| >d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: phi29 DNA polymerase species: Bacteriophage phi-29 [TaxId: 10756]
Probab=100.00 E-value=0 Score=29251.28 Aligned_cols=1 Identities=100% Similarity=-0.095 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~t~~s~~~~~fk~~~~~~~~~~~~p~~~~~~~~~ir~~y~GG~~~~~~~~~~~~~~~i~~yD~nSLYPs~M~~~~~p~g~ 80 (388)
T d2py5a2 1 MTAGSDSLKGFKDIITTKKFKKVFPTLSLGLDKEVRYAYRGGFTWLNDRFKEKEIGEGMVFDVNSLYPAQMYSRLLPYGE 80 (388)
T ss_dssp SSHHHHHHHHHHHHHCHHHHHHHSCCCCHHHHHHHHTTCCCCCEEECGGGBTCEECSEEEEEETTHHHHHHHHSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCC
T ss_conf 96307899999999765146540888991477888971217623214544555668548986557239998337899776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d2py5a2 81 PIVFEGKYVWDEDYPLHIQHIRCEFELKEGYIPTIQIKRSRFYKGNEYLKSSGGEIADLWLSNVDLELMKEHYDLYNVEY 160 (388)
T ss_dssp EEEEESSCCCCTTSCEEEEEEEEEEEECTTCCCCCCC-------CCSCCSBCTTSCEEEEEEHHHHHHHHHHEEEEEEEE
T ss_pred CEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECHHHHHHHHHCCCCEEEEE
T ss_conf 04653614666666770489999822765557766530344677865784668850567873899999995587258888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~f~~~~~~~k~~~~~~~~~kk~~~~~~q~~~KLl~NSlYGk~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
T d2py5a2 161 ISGLKFKATTGLFKDFIDKWTYIKTTSEGAIKQLAKLMLNSLYGKFASNPDVTGKVPYLKENGALGFRLGEEETKDPVYT 240 (388)
T ss_dssp EEEEEEEEESCTTHHHHHHHHHHHHHCCHHHHHHHHHHHHSSHHHHTCCSBCCBEEEEECTTSSEEEEECCCCBCCCCCH
T ss_pred EEEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHEECCCCCCCCCEEECCCCCEEHHHHHCCCCCCCCCH
T ss_conf 76677212357899999842588774017799999974542441013335655434641443200121210001464431
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~ia~~ita~~r~~~~~~~~~~~~~v~Y~DTDSi~~~~~~~~~~~~~~~~~~~lg~~~~E~~~~~~~~~~~K~Y~~~~~~~ 320 (388)
T d2py5a2 241 PMGVFITAWARYTTITAAQACYDRIIYCDTDSIHLTGTEIPDVIKDIVDPKKLGYWAHESTFKRAKYLRQKTYIQDIYMK 320 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTEEEEETTEEEEESSSCCGGGGGGBCSSSTTSEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCHHHHHHHHCHHHHCCCCCCCCCCHHHCCCCCHHHCEEECC
T ss_conf 48899998888889987641488379983636886577621567764245650546301010112116643201457424
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~v~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~d~~~~~~ 388 (388)
T d2py5a2 321 EVDGKLVEGSPDDYTDIKFSVKCAGMTDKIKKEVTFENFKVGFSRKMKPKPVQVPGGVVLVDDTFTIK 388 (388)
T ss_dssp EETTEEEECBTTBCSEEEEEEEETTCCHHHHTTCCTTTCSTTCEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred CCCCCCCCCCCEEECCHHHHHHHCCCHHHHHHHHHHHHCHHHHEEECCEEEEECCCCCEECCCEEECC
T ss_conf 54332233442340152456455231699999987750502411656351177069826524402239
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=100.00 E-value=0 Score=29251.47 Aligned_cols=1 Identities=0% Similarity=0.172 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~k~~~~~LtfDDVlLvP~~st~~~~~vdl~~~~t~~~~l~iPIisA~MDtVt~~~mAi~ma~~GGlgVihr~~~ie~q~~ 80 (388)
T d1eepa_ 1 NKITKEALTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRK 80 (388)
T ss_dssp CCSCCCCCCGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSSCHHHHHH
T ss_pred CCCCCCCCCCCCEEEECCCCCCCHHHCEEEEEEECCEECCCCEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHH
T ss_conf 96333578841079827988777778354489538776699877169888788999999998798899908999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~~~~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAvg~~~~~~~ra~~L~ 160 (388)
T d1eepa_ 81 EIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELV 160 (388)
T ss_dssp HHHHHHTCC--------------------------------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHH
T ss_conf 99986230044520036763310223300554422547877188876506777655224101220589789999999877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~aG~D~ivID~AhG~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~ 240 (388)
T d1eepa_ 161 KAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQI 240 (388)
T ss_dssp HTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHH
T ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf 51254543103663167799999999987899866500126799999998629775543122232345654236674238
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 sai~~~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~gm~S~~a~~~g~ 320 (388)
T d1eepa_ 241 TAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGS 320 (388)
T ss_dssp HHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC--------------
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEEECCCEEECCHHHHCCCCCCCEEEEECCCEEECCCCCCCHHHHHCCC
T ss_conf 89999999861577157853666737730136785155034053654136788418985892740155665487775445
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~~~~l~gglrs~m~y~Ga~~l~e~~~~~~fv~vt~~ 388 (388)
T d1eepa_ 321 KSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVKISHS 388 (388)
T ss_dssp ----------------------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHSCCEEECCCC
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEECCC
T ss_conf 21013334664422346704987078887899999999999997421586629998539889997899
|
| >d2dcfa1 e.3.1.1 (A:5-392) 6-aminohexanoate-dimer hydrolase NylC {Flavobacterium sp. [TaxId: 239]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: 6-aminohexanoate-dimer hydrolase NylC species: Flavobacterium sp. [TaxId: 239]
Probab=100.00 E-value=0 Score=29251.37 Aligned_cols=1 Identities=0% Similarity=-0.426 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~t~~nw~~~~~~r~~f~~~~~~~pt~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~t~a 80 (388)
T d2dcfa1 1 STGQHPARYPGAAAGEPTLDSWQEPPHNRWAFAHLGEMVPSAAVSRRPVNAPGHALARLGAIAAQLPDLEQRLEQTYTDA 80 (388)
T ss_dssp CCCCCCCSSTTCCTTCSCTTTTTSTTHHHHHTTCGGGTSCCCCCCSCC----CCCEEECTTHHHHCTTHHHHHHHTTEEE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCE
T ss_conf 99888455889523677847864886301205558774884342079888775333212444455433999987428847
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~lV~~~G~iv~E~y~~~~~~~t~~~~~SvtKs~ta~li~~lve~G~l~ldd~v~~ylPe~~~~~~~~iTi~~LL~mtsGl 160 (388)
T d2dcfa1 81 FLVLRGTEVVAEYYRAGFAPDDRHLLMAVSKSLCGTVVGALVDEGRIDPAQPVTEYVPELAGSVYDGPSVLQVLDMQISI 160 (388)
T ss_dssp EEEEETTEEEEEEECTTCCTTCCEECTTHHHHHHHHHHHHHHHTTSCCTTSBGGGTCGGGTTSTTSSCBHHHHHTTCBCC
T ss_pred EEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHCCCCC
T ss_conf 99998998999974699884320148999889999999999734854456752302454404543215677764233677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pg~~f~Y~~~~~~lLg~iie~~tG~~~~~~~~e~i~ 240 (388)
T d2dcfa1 161 DYNEDYVDPASEVQTHDRSAGWRTRRHGDPADTYEFLTTLRGDGSTGEFQYCSANTDVLAWIVERVTGLRYVEALSTYLW 240 (388)
T ss_dssp SCCCCSSCTTSHHHHHHHHHTSSCCCTTCCSSHHHHHHTCCCCSCBSSCCCCHHHHHHHHHHHHHHHCSCHHHHHHHHTG
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHCC
T ss_conf 64234355651355666653101001246188999874067679998789806789999999987517630222333204
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~PlGm~~~~~~~~~~~g~~~~~ggl~~tarDlarfg~l~l~~G~~~g~qils~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 320 (388)
T d2dcfa1 241 AKLDADRDATITVDTTGFGFANGGVSCTARDLARVGRMMLDGGVAPGGRVVSEDWVRRVLAGGSHEAMTDKGFTNTFPDG 320 (388)
T ss_dssp GGTTCSSCCEECBCTTCCBCTTTCEEECHHHHHHHHHHHHTTTEETTEECSCHHHHHHHHHCCCTTTCCCHHHHHHCTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 84212222222334567632100323132214577788874885488605649999998568972001245656678999
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~Yg~~ww~~~~~~~~~~~~G~~GQ~i~vdP~~~lvIV~ls~~~~~~~~~~~~~~~~i~~~i~~~l~av 388 (388)
T d2dcfa1 321 SYTRQWWCTGNERGNVSGIGIHGQNLWLDPLTDSVIVKLSSWPDPDTEHWHRLQNGILLDVSRALDAV 388 (388)
T ss_dssp EEETTEEECCCTTCCEEEEETTTEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCCEEECCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97864551699997089887789689999069989999599999985468999999999999997229
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29252.47 Aligned_cols=1 Identities=100% Similarity=0.603 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~pGP~~~~~~Vl~am~~~~i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT 80 (388)
T d1h0ca_ 1 HKLLVTPPKALLKPLSIPNQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGH 80 (388)
T ss_dssp CCCSSCCCGGGGSCCCCCCCEECSSSCCCCCHHHHHHHTCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHH
T ss_pred CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHH
T ss_conf 98767997676555688767212499988999999975768888789899999999999999996899983899869489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i 160 (388)
T d1h0ca_ 81 CALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVL 160 (388)
T ss_dssp HHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEE
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCC
T ss_conf 99999999861268740231134301000012211111133333587655216899987616971137874200014445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
T d1h0ca_ 161 QPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLD 240 (388)
T ss_dssp CCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTC
T ss_pred CCHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC
T ss_conf 67999988764025441001112344332112345651220333321468972677750078887544304666432212
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~ 320 (388)
T d1h0ca_ 241 IKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTT 320 (388)
T ss_dssp HHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEE
T ss_pred CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHCCCEEEE
T ss_conf 00023443210233443556657999988878999997166531000121047778777633753126887773880899
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~~ 388 (388)
T d1h0ca_ 321 VAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKKK 388 (388)
T ss_dssp EECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC-
T ss_pred EECCCCCCHHHHHHHHHHCCCEEEECCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98899989999999998519989957852204998998477777999999999999999999862569
|
| >d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29249.84 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~g~~ltr~~~d~~~g~~i~~~~~t~~G~~~v~v~~q~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~V~~v 80 (388)
T d1q8ia1 1 AQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGL 80 (388)
T ss_dssp CEEEEEEEEEEECCTTCBEEEEEEEETTEEEEEECSCBCEEEEEEGGGHHHHHHHTTTCCSEEEEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEEEEEECCCEEEEEEEECCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCEECCEEEECCCCCEEEEE
T ss_conf 98623630024771897799999985998879998799679999854567999998547781664322055789779999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 y~~~~~~~r~l~~~l~~~g~~vyEaDI~~~~RfliD~~i~~~~w~~~~~~~~~~~~~~~~~~~~~~P~lkilsfDIE~~~ 160 (388)
T d1q8ia1 81 YCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTR 160 (388)
T ss_dssp EESCHHHHHHHHHHHHHTTCCCBSTTCCHHHHHHHHTTCSSEEEEEEEEETTEEEEEEEEECTTCCCCCCEEEEEEEECT
T ss_pred EECCHHHHHHHHHHHHHCCCEEEECCCCHHHEEEEECCCCCCEEEEEECCCCEEECCEEEECCCCCCCCEEEEEEEEECC
T ss_conf 92899999999998862698589768996884899787888858998624661541067566788997359999999747
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~si~l~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~E~~LL~~F~~~i~~~dPDii~GyNi~~FDlpyL~~Ra~~~~ 240 (388)
T d1q8ia1 161 HGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYR 240 (388)
T ss_dssp TSCEEEEEEEETTEEEEEEESSCCSCCTTCSSEEEEESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 88667898548998889999567777787855999969999999999999987199889960788878899999999858
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 i~~~lgr~~~~~~~~~~~~~~~~~~~~i~Gr~~lD~~~~~k~~~~~~~sy~L~~Va~~~Lg~~K~~~~~~~~~~~~~~~~ 320 (388)
T d1q8ia1 241 LPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRF 320 (388)
T ss_dssp CCCCCSSSSCCCEEEEECSSSCEEEEEBTTBEEEEHHHHHHHSCCCCSCCCHHHHHHTTC------------CTHHHHHH
T ss_pred CCCHHHHCCCCCEEEECCCCCCCEEEECCEEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf 87404424772205875655651133020499860268897563043546776755410024455557255589987157
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~d~~~l~~Y~~~D~~Lv~~L~~k~~~i~~~~ela~l~g~pl~~~g~s~~~~~~lll~~~~r~g~v~P 388 (388)
T d1q8ia1 321 AEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAP 388 (388)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCSCTTTTCCHHHHHHHHHHHHHHHTTBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCEECC
T ss_conf 12489999998999999999999877899999999884979899788499999999999997799587
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=29247.83 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~s~~~~~~~~s~ir~~~~~~~~~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~ 80 (388)
T d1gdea_ 1 ALSDRLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNG 80 (388)
T ss_dssp CHHHHHHHSCCCHHHHHHHHHHHCTTCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 95156410894689999999858998199999889998789999999999855764789985779999999999875133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 160 (388)
T d1gdea_ 81 IEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKT 160 (388)
T ss_dssp CCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCTTE
T ss_pred CCCCCHHEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHCCCCC
T ss_conf 56787020431367535889999986589798998899848899999985998999514556687879999997375687
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR 240 (388)
T d1gdea_ 161 RALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWR 240 (388)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGC
T ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCHHHCCCCCCEEEEEECCHHHCCCCCCC
T ss_conf 59998999698888689999999999999869999997088655333677777656057788089995772433376361
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~fl 320 (388)
T d1gdea_ 241 LGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYI 320 (388)
T ss_dssp CEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBTTEE
T ss_pred EEEEEEECCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 78997302102343211232223333220045789986032036899999999875334566653212566589833799
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~~l~e~k~~ 388 (388)
T d1gdea_ 321 FPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVLKERKLV 388 (388)
T ss_dssp CCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEECCCCCCCHHHHHHHHHHHCCEEEEECHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99888879999999999998599999810451989999799996499999999999999999961799
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=29247.37 Aligned_cols=1 Identities=0% Similarity=-1.158 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~p~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg 80 (388)
T d1erja_ 1 HYLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATG 80 (388)
T ss_dssp CCCCCTTSSSCTTCCCCHHHHCCCSSSSCTTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEE
T ss_pred CCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEE
T ss_conf 95687113244147999705765843475322468897089868877762054107607999968999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~ 160 (388)
T d1erja_ 81 CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 160 (388)
T ss_dssp CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ECCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 49948999813640576631665443244321110146778988999988999801213444111121111111111111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 240 (388)
T d1erja_ 161 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240 (388)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCC
T ss_conf 11111111011111111112221015654101111110000124544211236887875899738981999634557300
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 320 (388)
T d1erja_ 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 320 (388)
T ss_dssp EEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG
T ss_pred EEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCC
T ss_conf 01024433345778987899997999999999789928987515776432101344420011012455327899988999
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k~ 388 (388)
T d1erja_ 321 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388 (388)
T ss_dssp CEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEEC
T ss_conf 99999969897999999999699999688997899998467425899999999918997999762149
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=0 Score=29246.94 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 m~~~~~~~~~~~s~~~~i~~~a~~~~~~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~ 80 (388)
T d1j32a_ 1 MKLAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKL 80 (388)
T ss_dssp CCCCHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 94523745399589999999999998779986899997899999899999999998558877899988999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~ 160 (388)
T d1j32a_ 81 QRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI 160 (388)
T ss_dssp HHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC
T ss_pred HHHCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHC
T ss_conf 87316577885599868789999999999819989899928981879999998568599983153336678999999727
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~ 240 (388)
T d1j32a_ 161 TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA 240 (388)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT
T ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHCCCCCCCEEEECCCHHHHH
T ss_conf 77874999889999877403535554432011237867972056531034677887888948522156057037705413
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~g 320 (388)
T d1j32a_ 241 MTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDG 320 (388)
T ss_dssp CTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCB
T ss_pred CCHHHEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCC
T ss_conf 60657599998899999998766521245668999887632445099999999999999999999998479978668993
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 g~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~~~~e~l~~al~rl~~~l~~l~ 388 (388)
T d1j32a_ 321 AFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHGIL 388 (388)
T ss_dssp TTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 68999988887999999999999869999981643599996999983899999999999999999859
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=29245.92 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~yPIVLvHGl~Gf~~~~l~~~~YW~G~~~~I~~~L~~~G~~V~~~~V~p~~S~~~RA~eL~~~I~~~~~d~G~~ 80 (388)
T d1ku0a_ 1 ASPRANDAPIVLLHGFTGWGREEMLGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNWDRACEAYAQLVGGTVDYGAA 80 (388)
T ss_dssp CCCCCCCCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEECCCCSSBCHHHHHHHHHHHHHCEEEECCHH
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98877999889818866677544676214678536468999858978998516986678999999999986345453376
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 hs~~~~~~~~~r~y~g~~~~~~~~~kVnLIgHS~GGld~Ryl~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~SvTT 160 (388)
T d1ku0a_ 81 HAAKHGHARFGRTYPGLLPELKRGGRVHIIAHSQGGQTARMLVSLLENGSQEEREYAKEHNVSLSPLFEGGHRFVLSVTT 160 (388)
T ss_dssp HHHHHTSCSEEEEECCSCGGGGGTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCCCEEEEEE
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 77652302237567220003366786358604554587999999702356432222212344333223567750688885
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 IsTPH~GS~~AD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~~es~~~~~~~~~~s~~~~~~~~a 240 (388)
T d1ku0a_ 161 IATPHDGTTLVNMVDFTDRFFDLQKAVLEAAAVASNAPYTSEIYDFKLDQWGLRREPGESFDHYFERLKRSPVWTSTDTA 240 (388)
T ss_dssp ESCCTTCCGGGGSTTHHHHHHHHHHHHHHHHHHHTTSCGGGCCCCCCBGGGTBCCCTTCCHHHHHHHHHTSHHHHSSSBH
T ss_pred CCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHH
T ss_conf 05788986366542346652147889998876403542110002466653343457651099999988538876666401
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~dLtt~g~~~fN~~~~~~p~v~Y~S~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~NDGlV 320 (388)
T d1ku0a_ 241 RYDLSVPGAETLNRWVKASPNTYYLSFSTERTYRGALTGNYYPELGMNAFSAIVCAPFLGSYRNAALGIDSHWLGNDGIV 320 (388)
T ss_dssp HHHHSHHHHHHHHHHCCCCTTSEEEEEEECCEEECTTTCCEEECTTSCHHHHHHTHHHHTTCCBGGGTBCGGGCCBSSSS
T ss_pred HHHCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 03106599999733357899846777785143345777632224444454334557545553346532137679988865
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~v~S~~~g~~~~~~~~~~~~~~i~~G~W~~~~~~~~DHld~iG~~~~~~~~~~~~Y~~~a~~L~~l~~ 388 (388)
T d1ku0a_ 321 NTISMNGPKRGSNDRIVPYDGTLKKGVWNDMGTYNVDHLEVIGVDPNPSFNIRAFYLRLAEQLASLRP 388 (388)
T ss_dssp BGGGSSSCCTTCCCCEEECCSSCCBTSEEEEEEESCCTTGGGTSSCCTTSCHHHHHHHHHHHHHTCCC
T ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 88557587056777543345654455011036547649997388987877999999999999843999
|
| >d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: NagZ-like domain: Beta-D-glucan exohydrolase, N-terminal domain species: Barley (Hordeum vulgare) [TaxId: 4513]
Probab=100.00 E-value=0 Score=29247.77 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~y~d~~~~~e~Rv~dLl~~MTleEKigQl~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~lq~~ 80 (388)
T d1x38a1 1 DYVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKGATAKEWQDMVDGFQKA 80 (388)
T ss_dssp CCCGGGCTTSCHHHHHHHHHTTCCHHHHHHHTEEEEGGGCCHHHHHHTTCCEEEECTTCCSSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99876889999999999999877999999613064445688788985256616636876667898999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~giPlli~~D~e~G~~~~~~~t~~p~~~~~aat~d~~l~~~~g~~~g~E~ra~Gin~~~aPv~Dv~~~p~~gr~~ 160 (388)
T d1x38a1 81 CMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYLVKRIGEATALEVRATGIQYAFAPCIAVCRDPRWGRCY 160 (388)
T ss_dssp HHTSSSCCCCEEEECCSSSSTTSTTCCCCCCHHHHHHHTCHHHHHHHHHHHHHHHHHTTCCEECCCBCCCCSCTTSTTGG
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87436898836633655675235664210033311025897999999998657887448763367763534564446556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 et~geDp~l~~~~~~~v~~~~g~~~~~~~~G~~~~~~~~gV~a~~KHFpG~g~~~~~~~~~~~~i~~~~l~~~~l~pf~~ 240 (388)
T d1x38a1 161 ESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKN 240 (388)
T ss_dssp GSSCSSHHHHHHGGGHHHHHHCCCCTTCCTTCCCCCSTTSCBCEEEEETTGGGCGGGCTTCEECCCHHHHHHHTSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 67667889999988653664110135430122223455674213314436886646740334530488899886145577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~i~~g~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~~gF~G~VvSD~~~m~~~~~~~~~~~~~~~~~a~~ag~d~~~~~~~ 320 (388)
T d1x38a1 241 AMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSDYSYSVKASILAGLDMIMVPNK 320 (388)
T ss_dssp HHHTTCCEEEECSSEETTEEGGGCHHHHCCCCCTTSCCCSEEECCTTTTGGGSSSTTTTHHHHHHHHHHHTCCBEECCSC
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCHHHCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCC
T ss_conf 77605651223422357756657999999998730599752424221023312356775789999998517881347853
Q ss_pred -------------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~l~~av~~G~i~~~rid~sv~Ril~~k~~lGlfd~p~~~~~~~~~i~~~~h~~~a~~aA~~S 388 (388)
T d1x38a1 321 YQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAEQLGKQEHRDLAREAARKS 388 (388)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHTTTTTCCSCCGGGGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 89999999999985998999999999999999999489988877824544069999999999999639
|
| >d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Indolic compounds 2,3-dioxygenase-like superfamily: Indolic compounds 2,3-dioxygenase-like family: Indoleamine 2,3-dioxygenase-like domain: Hypothetical protein SO4414 species: Shewanella oneidensis [TaxId: 70863]
Probab=100.00 E-value=0 Score=29183.80 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~d~wir~~f~~~n~~le~~y~~~~~~~~~~~~g~~~k~~l~~~g~~~i~~ll~egntdegf~~~f~llgnvg~ym 80 (387)
T d1zeea1 1 YNTEAFDEWIRSRFVELNSQLEQLYYQQTDRANVQEVGTELKHTLESEGRELVKALLDEGNTDEGFDSAFDLLGNVGLYM 80 (387)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHHHHHSSSSSCCSSSCHHHHHHHHHHHHHHHHTTTTTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 96678889999999998799999997477732342000899999999889999999966785231799999975158999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~acrrh~i~ep~re~~~p~~eas~la~~~~as~gv~prf~~~hl~~hn~a~~~~~k~ft~l~de~~f~~~nt~~~~a~~~ 160 (387)
T d1zeea1 81 AACRRHEITEPTRETTSPLLEASALAMHIGASIGVTPRFATAHLTTHNRAHNGIYKRFTDLPDEKLFVDYNTKGILAYKR 160 (387)
T ss_dssp HHHHHTTSSCTTTCSSCSCHHHHHHHHHHHHHHTSCSSCCHHHHTTTCCEETTEECCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99874267785301368414437999988886399923566666315665410676305883578999875799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 a~~~l~~~~~lgi~hp~~~~ll~~~~~aLq~v~~sn~~l~~~ld~~~Ff~~vRPyykP~rVG~q~YrG~sAgqsa~I~vl 240 (387)
T d1zeea1 161 ASDALLKIQPLGISHPISHDLLRVTKQALQDVIESNQQLFNRLDTDRFFYCVRPYYKPYRVGSVVYRGANAGDFAGINVI 240 (387)
T ss_dssp HHHHHHTTTTTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHTGGGGCCEEETTEEECCCCTTCSHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHCCCEEECCCCHHHCCCHHHH
T ss_conf 99998764287899754899999999999999999999998439999899856312543237751079971201008999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 D~LLGvcha~dP~ysqfL~dmr~YMPP~hra~L~d~~r~PSl~d~vLsa~~~~~~~~y~~nL~aflevC~~hg~afR~hH 320 (387)
T d1zeea1 241 DLTLGLCFANEASYSQMLVDKFLYMMPEDQQILRECMRRPNLMDDFLQAKGCIHQDWYQENLKLFIEVCELHGQTAIQHH 320 (387)
T ss_dssp HHHTTSSCTTSHHHHHHHHTTGGGSCHHHHHHHHHHTTSCCHHHHHHHTGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99975563799409999999986179789999999863871689998635650038999999999999999999999999
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 lQlV~KYI~~pS~~~~~q~~~~lTaSGPpl~vLLk~LkKLRD~R~AA~r~Di~tr~~d~~~l~~~l~ 387 (387)
T d1zeea1 321 NELVTKYIAEPSVSMEQQHLAKVTASGPPLHVLLASLERLRDRRAAVLRDDIRTRYYDLKKLKDSLR 387 (387)
T ss_dssp HHHTSCC------------------------CCHHHHHHHHHHHTTCCCSSSCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9999999972887434266566447899807899999998665542031137763999999998609
|
| >d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Influenza neuraminidase species: Influenza A virus, different strains [TaxId: 11320]
Probab=100.00 E-value=0 Score=29182.14 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 e~~n~t~plC~i~gfa~~sKDN~iR~g~~g~i~V~REPyVSC~p~eCr~FaL~QGa~l~~kHsNGTi~DRsp~R~L~s~~ 80 (387)
T d2aepa1 1 EYRNWSKPQCKITGFAPFSKDNSIRLSAGGDIWVTREPYVSCDPDKCYQFALGQGTTLNNRHSNDTVHDRTPYRTLLMNE 80 (387)
T ss_dssp CCCCCCSCBCCCSEEEEEEECCHHHHHTTSCCEEEEEEEEEECSSCEEEEEEEEEEESSSGGGTTCCCSCCTTCEEEEEE
T ss_pred CCCCCCCCCCCCCCEEEEECCCCEEECCCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHEEEECC
T ss_conf 95546676675343046763662575378866998266020284401357631321027866688426654101035513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 lG~P~~~~s~~~~vaWSsssCHDGk~wl~I~vtG~D~nA~A~i~Y~g~~tdti~SW~~nILRTQESeCvCinG~C~vvmT 160 (387)
T d2aepa1 81 LGVPFHLGTKQVCIAWSSSSCHDGKAWLHVCVTGHDENATASFIYDGRLVDSIGSWSKKILRTQESECVCINGTCTVVMT 160 (387)
T ss_dssp TTCCCCTTCEEEEECSEEEEEECSSCEEEEEEESCTTSCEEEEEETTEEEEEEECSSSSCCBCCSSCCEEETTEEEEEEE
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEECCEEEEHHHHHHHHHCCCCCCCEEEECCEEEEEEE
T ss_conf 67997558657899863243468862489987768888089999899985326544430120042204898998899992
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 DG~A~~~A~~ri~~i~eGkIik~~~l~g~~~HiEECSCYp~~~~V~CvCRDNW~GsNRP~v~in~~~~~~~~~YvCsg~~ 240 (387)
T d2aepa1 161 DGSASGRADTKILFIEEGKIVHISPLSGSAQHVEECSCYPRYPGVRCVCRDNWKGSNRPIVDINVKDYSIVSSYVCSGLV 240 (387)
T ss_dssp EECSSSCEEEEEEEEETTEEEEEEECCSSCCCCEEEEEEEETTEEEEEEECCSSCSSCEEEEECTTTCCEEEEECCCSSC
T ss_pred CCCCCCCCEEEEEEEECCEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCEEEECCHHCEEEEEEEECCCC
T ss_conf 68878853068999845638877606888673276330379982699970688877897499540022045305753644
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~DTpRp~D~s~~g~C~~p~~~~G~~GVKGf~F~~Gn~vW~GRTiS~~sRsGfE~~~v~~gwt~~~Sk~~~~~q~iV~n~n 320 (387)
T d2aepa1 241 GDTPRKNDSSSSSHCLNPNNEEGGHGVKGWAFDDGNDVWMGRTISEKFRSGYETFKVIEGWSKPNSKLQINRQVIVDRGN 320 (387)
T ss_dssp CCSSCCCTTTCCCCSSSCCCSSCSSCCCCCEEEETTEEEEEECSSSSSSEEEEEEEETTTTTSTTCCCEEEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCC
T ss_conf 78999888776655658888888886163368658973876532376677616999458875878634111479995588
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 wSGYSGsF~~~~k~C~~pCF~VElIRGrp~E~~v~WTS~S~v~fCG~~~~~~~~swpDGA~i~~mp~ 387 (387)
T d2aepa1 321 RSGYSGIFSVEGKSCINRCFYVELIRGRKQETEVWWTSNSIVVFCGTSGTYGTGSWPDGADINLMPI 387 (387)
T ss_dssp ECCCEEEEEEECSSSEEEEEEEEEEEETTTCTTSSCEEEEEEEEEEESSCCCCCCCCCCCCGGGSCC
T ss_pred CCCCEEEEEECCCCCCCEEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7752257996899842002899996078764505785187799936789867866899766676669
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29178.27 Aligned_cols=1 Identities=0% Similarity=-0.725 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~l~~~~~~l~~~a~~g~ld~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~ 80 (387)
T d1qvra2 1 TYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKR 80 (387)
T ss_dssp CCSHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCE
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCE
T ss_conf 93779999798899998599998748089999999998248899976879999889999999999998089997886966
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~ 160 (387)
T d1qvra2 81 IVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTL 160 (387)
T ss_dssp EEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECH
T ss_pred EEEEEHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCH
T ss_conf 89955766652667413689999999998505899669872408888427778774138999999973788516663689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKAidlld~a 240 (387)
T d1qvra2 161 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEA 240 (387)
T ss_dssp HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99987633679998246112799867889999999999987404774669999999985023666566704688999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~a~~~i~~~s~P~el~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~ 320 (387)
T d1qvra2 241 AARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQH 320 (387)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998641589588999999999999999998740145788887653323567999999999999888879999999999
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~Le~lr~~le~A~r~gd~e~AaeL~y~~ip~le~el~~l~~~~~~~~lvr~~VteedIA~VVSrWTG 387 (387)
T d1qvra2 321 RLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTG 387 (387)
T ss_dssp HHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9999999999999764688788875250799999999999873579877686398999999976109
|
| >d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: (Phosphotyrosine protein) phosphatases II superfamily: (Phosphotyrosine protein) phosphatases II family: Myotubularin-like phosphatases domain: Myotubularin-related protein 2, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29176.12 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~edGW~~yd~~~E~~RlGl~~~~WRiS~iN~~Y~lC~SYP~~lVVP~~isD~~l~~~a~fr~~~R~Pvl~w~~~~~~ 80 (387)
T d1zsqa2 1 EVFPENGWKLYDPLLEYRRQGIPNESWRITKINERYELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQ 80 (387)
T ss_dssp CCCSSCGGGSCCHHHHHHHTTCSCSSEEEECTTTTSSSCTTSCSSEEEETTCCHHHHHHHHHHBGGGCCCEEEEECTTTC
T ss_pred CCCCCCCHHHCCHHHHHHHCCCCCCCEEEEEECCCCEECCCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 98788763235889999863899888788542699704588998169828589999999987636997607988759998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 a~L~RssqP~~g~~~~r~~ede~~l~~i~~~~~~~~~~~I~D~Rp~~na~an~~~ggG~E~~~~Y~~~~~~f~~i~nih~ 160 (387)
T d1zsqa2 81 ATITRCSQPMVGVSGKRSKEDEKYLQAIMDSNAQSHKIFIFDARPSVNAVANKAKGGGYESEDAYQNAELVFLDIHNIHV 160 (387)
T ss_dssp CEEEEECCBCCTTTTCCCHHHHHHHHHHHHHSSSCSSEEEEECSCHHHHHHHHHHTCCCCCTTTCTTEEEEECCCCCHHH
T ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHCCCCCCCHHCCCCCEEEEECCCCHHH
T ss_conf 36885178577756787689999999999737776753555477414688752248986552105675245304665278
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 vr~s~~kl~~~~~~~~~~~~~~s~le~s~WL~~i~~~L~~A~~ia~~l~~~~~sVlVh~sdGwD~T~qvsSL~ql~lDpy 240 (387)
T d1zsqa2 161 MRESLRKLKEIVYPNIEETHWLSNLESTHWLEHIKLILAGALRIADKVESGKTSVVVHSSDGWDRTAQLTSLAMLMLDGY 240 (387)
T ss_dssp HHHHHHHHHHHHSSCCCGGGHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECSSSSSHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999998558875466775243444499999999999999999970897399857888752489999999973832
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 yRTi~GF~~LIekewi~~Gh~F~~R~~h~~~~~~~~e~sPvFl~FLDcV~ql~~q~P~~FEF~e~~L~~l~~h~~s~~fg 320 (387)
T d1zsqa2 241 YRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFG 320 (387)
T ss_dssp GGSHHHHHHHHHHHTTTTTCCHHHHHTTTCCCTTCTTCCCHHHHHHHHHHHHHHHCTTTCSBCHHHHHHHHHHHHHCSSS
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 11188899999988873378632342678777566777985699999999998749740112799999999986026646
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 tFl~n~e~eR~~~~~~~~t~Slw~~~~~~~~~f~N~~Y~~~~~~~l~P~~~~~~~~~W~~~ylR~~p 387 (387)
T d1zsqa2 321 TFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNP 387 (387)
T ss_dssp TTCSSSHHHHHHTTHHHHSCCHHHHHHTCGGGGBCTTTTSCSSSCCCCCCSTTTCCCCHHHHTCSCC
T ss_pred CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEHHHHCCCCCC
T ss_conf 4555899999871768787369999987599855978788999857033675667426753335587
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29172.40 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~~~~~~~~~~~y~~~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~~~ 80 (387)
T d1vefa1 1 WRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPM 80 (387)
T ss_dssp CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHH
T ss_pred CHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEECCCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 96688606531489878898318984749999798799998464187665528969999999999976364666557705
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~ 160 (387)
T d1vefa1 81 RGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVE 160 (387)
T ss_dssp HHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEE
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCE
T ss_conf 99999876530232101111246726799999999876113312325656889996123863478655678878899826
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~p~~d~~~l~~~~~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PD 240 (387)
T d1vefa1 161 FIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPD 240 (387)
T ss_dssp EECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCS
T ss_pred EECCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86889799999756897479999787788888649989999999999976926984002224674677765446783776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 i~~~gK~l~gG~~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~~~~ 320 (387)
T d1vefa1 241 ILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPK 320 (387)
T ss_dssp EEEECGGGGTTSSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCCTT
T ss_pred EEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 33313257887666332221023102236883553799863001011200010333222057665078999998617984
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~g~l~~~~g~~~ir~~Ppl~it~~~ld~~~~~i~~aLS 387 (387)
T d1vefa1 321 IREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVLA 387 (387)
T ss_dssp EEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred EEEEEECCEEEEEEEECCCHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 5788521469999982774699999999789759933899899979713999999999999999859
|
| >d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp. Thermophilus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Thermus aquaticus, subsp. Thermophilus [TaxId: 271]
Probab=100.00 E-value=0 Score=29172.05 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~p~~~~~f~~~~W~~~~~g~dpfg~~~~~~~~~~~~~~~~~~lg~~~~~fHd~d~~p~~~~~~e~~~~~~~~k~~~~~ 80 (387)
T d1bxba_ 1 MYEPKPEHRFTFGLWTVGNVGRDPFGDAVRERLDPVYVVHKLAELGAYGVNLHDEDLIPRGTPPQERDQIVRRFKKALDE 80 (387)
T ss_dssp CCCCCGGGCEEEEHHHHTCCCCBTTBCCCSCCCCHHHHHHHHHHHTCSEEEEEHHHHSCTTCCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99998766147997235787889988543112788999999984499878516665588899878999999999998641
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~Gl~~~~~t~nlf~~~~~~~Gs~t~pD~~vR~~Ai~~~k~~id~a~~LGa~~~vlW~G~dG~~~~~~~d~~~~~~~~~e~ 160 (387)
T d1bxba_ 81 TGLKVPMVTANLFSDPAFKDGAFTSPDPWVRAYALRKSLETMDLGAELGAEIYVVWPGREGAEVEATGKARKVWDWVREA 160 (387)
T ss_dssp HTCBCCEEECCCSSSGGGGGCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCTTCEESCGGGCGGGTHHHHHHHH
T ss_pred CCCCEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 68721122454355623324764689889999999999999999998499979975787766776306799999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 l~~v~~~a~~~g~~~~i~iEpkP~EP~~~~~~~~~~~~l~~~~~~g~~~~~gl~lD~~H~~l~g~~~~~~v~~a~~~gkL 240 (387)
T d1bxba_ 161 LNFMAAYAEDQGYGYRFALEPKPNEPRGDIYFATVGSMLAFIHTLDRPERFGLNPEFAHETMAGLNFVHAVAQALDAGKL 240 (387)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCSSSSSSEESSCSHHHHHHHHTTSSSGGGEEECCBHHHHHHTTCCHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHEEECCCCCHHHHCCCCHHHHHHHHHHHCCE
T ss_conf 99999977750788379995168988544214889999999998377020754123044530487668899999983964
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 g~vh~Nd~~~~~~D~DL~~g~~~~~~~~~~~~~L~~~gy~G~~~fD~~~~r~~~~~~l~~~~~~~m~~~a~ll~~a~~l~ 320 (387)
T d1bxba_ 241 FHIDLNDQRMSRFDQDLRFGSENLKAAFFLVDLLESSGYQGPRHFDAHALRTEDEEGVWAFARGCMRTYLILKERAEAFR 320 (387)
T ss_dssp CCEECCBCCSSSSCCCBCTTSSCHHHHHHHHHHHHHTTCCSCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15574777777887666888621889999999998458876433134567788500689999999999999999999988
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~d~~~~~~l~ary~~~~a~~~~~~~~~~~~~~~l~~~~~~~~a~~~~s~~qE~Le~l~n~~i~g~~~ 387 (387)
T d1bxba_ 321 EDPEVKELLAAYYQEDPAALALLGPYSREKAEALKRAELPLEAKRRRGYALERLDQLAVEYLLGVRG 387 (387)
T ss_dssp TCHHHHHHHHHHTCCCHHHHTTSSSCCSHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHTTCCC
T ss_pred HCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 6768999999987212442201100145679984476678431432672499999999999862369
|
| >d2ex0a1 c.87.1.9 (A:26-412) Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteurella multocida [TaxId: 747]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Sialyltransferase-like domain: Alpha-2,3/2,6-sialyltransferase/sialidase species: Pasteurella multocida [TaxId: 747]
Probab=100.00 E-value=0 Score=29178.47 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ktlEvYvD~AsLPslqqlm~iiq~ne~~~n~rli~w~R~~i~d~~l~~~~n~~F~~~~~n~~~~~~~~il~~~~~~~~in 80 (387)
T d2ex0a1 1 KTITLYLDPASLPALNQLMDFTQNNEDKTHPRIFGLSRFKIPDNIITQYQNIHFVELKDNRPTEALFTILDQYPGNIELN 80 (387)
T ss_dssp EEEEEEEESSSHHHHHHHHHHHHTTTCSSSCEEEEETTCCCCHHHHTTCSSEEECCEETTEECTHHHHHHTTCCSCEEEE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 95699954355615999999986046778821577742368778987301021354457895299999997174433799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 i~~Nt~hS~d~~~~I~~~~~~~~~kv~i~~L~lYDDGSaEYV~l~~~k~~d~~~~~~~~~~~l~~~l~~Gt~~~~n~~~~ 160 (387)
T d2ex0a1 81 IHLNIAHSVQLIRPILAYRFKHLDRVSIQQLNLYDDGSMEYVDLEKEENKDISAEIKQAEKQLSHYLLTGKIKFDNPTIA 160 (387)
T ss_dssp EEEESTTHHHHHHHHHHHHHHTTTTEEEEEEEEECCSHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHCCCCCSCHHHH
T ss_pred EECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 82121767776899999998740573048887752885888667764133034445678899988876387778985101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~Y~w~qlypt~YH~Lr~Dyf~~~~~L~~Lk~yL~~n~kqM~Wd~f~~fn~~Qk~lf~~~vgf~~E~~qq~~~q~~nFiFt 240 (387)
T d2ex0a1 161 RYVWQSAFPVKYHFLSTDYFEKAEFLQPLKEYLAENYQKMDWTAYQQLTPEQQAFYLTLVGFNDEVKQSLEVQQAKFIFT 240 (387)
T ss_dssp TTCGGGTSCEEEEESCHHHHHHCGGGHHHHHHHGGGEEECCSCHHHHSCHHHHHHHHHHHTCCHHHHHHTCCSSEEEEEE
T ss_pred EEEHHHCCCCHHHHEEHHHHHCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEE
T ss_conf 33044406743431105565057452479999840333467523200698888899987179899999997267875997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 GTts~~~~~e~~eyyaqqQInvin~a~ne~s~~~~g~~ydLfFKGHP~~~~~N~~I~~~~~~mi~IpakIpFEvLmMTg~ 320 (387)
T d2ex0a1 241 GTTTWEGNTDVREYYAQQQLNLLNHFTQAEGDLFIGDHYKIYFKGHPRGGEINDYILNNAKNITNIPANISFEVLMMTGL 320 (387)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHHHHSTTSTTCCCTTEEEEEECCTTCTHHHHHHHHHSSSCEECCTTSCHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCCCCHHHHHHHHCCHHHHCCCCCCCHHHHHHCCC
T ss_conf 13455676306778899989998732388996530675115772699865056899743355522644586299987278
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 LPd~VGG~aSSlyFsiP~e~in~ivFtss~~~~s~~d~~~~~lvqVM~~L~iv~~~~V~fw~~~k~~ 387 (387)
T d2ex0a1 321 LPDKVGGVASSLYFSLPKEKISHIIFTSNKQVKSKEDALNNPYVKVMRRLGIIDESQVIFWDSLKQL 387 (387)
T ss_dssp CCSEEEEECCGGGGGSCGGGEEEEEECCCSSCSSHHHHHTSHHHHHHHHTTSCCGGGEEEGGGSCCC
T ss_pred CCHHHCCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHCCHHHHHHHHCCCCHHHEEEHHHHHCC
T ss_conf 8054336000258975533124899933764256565653839999999777766763676753039
|
| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Bacillus licheniformis [TaxId: 1402]
Probab=100.00 E-value=0 Score=29173.31 Aligned_cols=1 Identities=100% Similarity=1.101 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 ~~~~~~~~~~~~~f~~g~d~s~~~~~e~~g~~~~~~~g~~~d~~~~lk~~G~n~VRl~vw~~~~~~~~~~~~~g~~~l~~ 80 (387)
T d1ur4a_ 1 GLYVEKVSGLRKDFIKGVDVSSIIALEESGVAFYNESGKKQDIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEK 80 (387)
T ss_dssp CCCCCCCTTCCTTCEEEEECTTHHHHHHTTCCCBCTTSCBCCHHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHH
T ss_pred CCCCCCCCCCCHHCEEEEECHHHHHHHHCCCEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf 95223578998100777861068999867977889999710599999983998799404447743335767776242999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~a~~~Gl~v~ldlH~sd~wadp~~q~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eigNE~~~~~ 160 (387)
T d1ur4a_ 81 AIQIGKRATANGMKLLADFHYSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGL 160 (387)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSSSCCSSSCCCCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCB
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 99999999987997999867787776877777850321322047999999999999998863699812799724888674
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~ll~~~~~avr~~dp~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~d~ig~s~Y~~w~~~~~~~~~~l~~ 240 (387)
T d1ur4a_ 161 AGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNPETSGRYAWIAETLHRHHVDYDVFASSYYPFWHGTLKNLTSVLTS 240 (387)
T ss_dssp TTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCTTSTTHHHHHHHHHHHTTCCCSEEEEEECTTTSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 67688999999999999998730887527872267653277889999998659876400202312347608999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 l~~~~~k~v~v~E~~~~~t~~~~d~~~~~~~~~~~~~~~p~s~~gQ~~~l~~l~~~~~~~~~~G~G~~YWep~w~~~~~~ 320 (387)
T d1ur4a_ 241 VADTYGKKVMVAETSYTYTAEDGDGHGNTAPKNGQTLNNPVTVQGQANAVRDVIQAVSDVGEAGIGVFYWEPAWIPVGPA 320 (387)
T ss_dssp HHHHHCCEEEEEEECCCSCSCCSSSSCCSSSCTTSCCCSCSSHHHHHHHHHHHHHHHHTTCTTEEEEEEECTTCCCSSCG
T ss_pred HHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf 99983996389985044347786444765787633356777899999999999999985478805999735763136777
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~w~n~aLFd~~g~~l~~l~~f~~~~~~~~~ 387 (387)
T d1ur4a_ 321 HRLEKNKALWETYGSGWATSYAAEYDPEDAGKWFGGSAVDNQALFDFKGRPLPSLHVFQYVDTGTPF 387 (387)
T ss_dssp GGHHHHHHHHHHHCCSSBCGGGTTTCTTTHHHHCBSCSCGGGCSBCTTSCBCGGGGHHHHHHHCCC-
T ss_pred CCCCCCHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
T ss_conf 6543450345412642032213324641123456777411210335589867577877413478999
|
| >d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: beta-secretase (memapsin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29169.86 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~l~~~~~~~Y~~~i~IGtP~Q~~~li~DTGSs~lWv~~~~c~~~~~~f~~~~SsT~~~~~~~~~i~Y~~g~~~G 80 (387)
T d2qp8a1 1 FVEMVDNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEG 80 (387)
T ss_dssp CTTTTTCEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEE
T ss_pred CCCHHHCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCEEE
T ss_conf 92133025589999899999988999799999989961048926898767881583028871757981899968960999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~D~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~~~~~~~~fs~~l~~~~ 160 (387)
T d2qp8a1 81 ELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAG 160 (387)
T ss_dssp EEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCCSCEEEEECCCS
T ss_pred EEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 99999999847773367478999982477621134556622334564435788778537888626574215767632455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~G~l~~Gg~d~~~~~g~~~~~~~~~~~~~~v~~~~i~v~g~~~~~~~~~~~~~~aiiDSGts~i~lp~ 240 (387)
T d2qp8a1 161 FPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPK 240 (387)
T ss_dssp SCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEEEH
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCEEEEEEEEEEECCEECCCCCCCCCCCCEEEECCCCEEECCH
T ss_conf 44456644457784467456233334573586314543336899879999999656654567764169816997086889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~fp~~~~~~~~~~~~~~~~~~i~p~~y~~~~~~~~~~~~~ 320 (387)
T d2qp8a1 241 KVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDD 320 (387)
T ss_dssp HHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCE
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCEEEEEECHHHHEEECCCCCCCCCE
T ss_conf 99999999856001465567754453156410038986421340578866621233079998879911551356786766
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 c~~~~~~~~~~~~ILG~~Flr~~y~vfD~~~~~IGfA~a~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (387)
T d2qp8a1 321 CYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEGPFVTLDMEDCGYN 387 (387)
T ss_dssp EEEECEEEESSCEEECHHHHTTEEEEEETTTTEEEEEEETTCCCCSSCCCEEEEEEECCCGGGGSCC
T ss_pred EEEEEECCCCCCEEEHHHHHCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCC
T ss_conf 8998707999977970894286899998999999999778687788131256798888984652789
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=100.00 E-value=0 Score=29169.30 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~p~~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~ 80 (387)
T d1k3ia3 1 YTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPG 80 (387)
T ss_dssp CCCCCTTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEE
T ss_conf 98788978716786889861017899925999999984057666788776068999988889686667789874452568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~ 160 (387)
T d1k3ia3 81 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 160 (387)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred EEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCCEE
T ss_conf 99946886898636888621675675574421565664210130355317826652136633354320566348889551
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (387)
T d1k3ia3 161 SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYD 240 (387)
T ss_dssp EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEE
T ss_pred ECCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 15887644311346651365042269997079877874686774781486667173166556676657632226378861
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~ 320 (387)
T d1k3ia3 241 AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPV 320 (387)
T ss_dssp TTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBC
T ss_pred CCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCEE
T ss_conf 35882478875367887752100000111113567884060366566543433566058749998884567668899470
Q ss_pred ------------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~Ppyl~~~~ 387 (387)
T d1k3ia3 321 FTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYLYNSN 387 (387)
T ss_dssp CCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECGGGBCTT
T ss_pred CEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCHHCCCCC
T ss_conf 1079897999918878899975531279999889999999698767888661148998260405898
|
| >d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Tryptophanyl-tRNA synthetase (TrpRS) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29094.70 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~pw~v~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~rRg~~f~hrd~~~il~~~~~gkp~~vytG 80 (386)
T d1r6ta2 1 EDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG 80 (386)
T ss_dssp CCEESSSCEECSCTTCCCHHHHHHHHTCEECCHHHHHHHHHHHCSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHCCEEEECCCHHHHHHHHHCCCCEEEEEC
T ss_conf 98438660668876666699999984888688899999997536886154533604422679999999974998589945
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~PSg~~lHlGh~v~~~~~~~~q~~~~~~v~i~iaD~~a~~~~~~~~~e~~~~~~e~~~~~lA~GlDp~kt~i~~~s~~~ 160 (386)
T d1r6ta2 81 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYM 160 (386)
T ss_dssp ECCCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHH
T ss_conf 17998402899999999999999721324489932517640456999999999999999999817895002899684799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~l~~~~~~~~~l~r~~t~~~~k~~~~~~~~~~~g~~~YP~lQaaDil~~~~d~~~~~~~~~~~lvpvG~DQ~~h~~ltR 240 (386)
T d1r6ta2 161 GMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTR 240 (386)
T ss_dssp GGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98899999999998756514888864335677676531279889999983470542255665420110262899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 Dia~r~~~~~p~~l~~~~lpgL~G~~~KMSsS~~~s~I~l~D~~~~i~~KI~~~~~~~~~~~~~e~~~~~g~~~~~v~~~ 320 (386)
T d1r6ta2 241 DVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 320 (386)
T ss_dssp HHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHH
T ss_pred HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 99998278886221144556778743445567777434635988899997661143168765446000389841317999
Q ss_pred -----------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~l~~f~~d~~~~eel~~~y~~G~l~~gd~K~~lae~l~~~l~~~rekr~~~~~~~v~~~l~~~kl~ 386 (386)
T d1r6ta2 321 YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLA 386 (386)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCCC
T ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999986987589999999976999989999999999999978999999998888999985546799
|
| >d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=29094.65 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~pe~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~rpTPLi~~~~Ls~~lgg~~Iy~K~E~lnptGS 80 (386)
T d1v8za1 1 MWFGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGA 80 (386)
T ss_dssp CEETTEECCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSB
T ss_pred CCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 97678098848788899999999999999639899999999987338999855173766876289739999666877877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~KdR~a~~~i~~a~~~G~~~~v~~~s~Gn~g~a~A~aaa~~G~~~~i~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~ 160 (386)
T d1v8za1 81 HKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRT 160 (386)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSS
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCH
T ss_conf 64168999999876528831675225226999999999976986430344115544179999998649827994687430
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~q~~~~~g~~pd~vv~~vGgG~~~~g~~~~~~ 240 (386)
T d1v8za1 161 LKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV 240 (386)
T ss_dssp HHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 88889989999986056654214544574336133310013544537888998628989889977887178899998764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~v~iigvep~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v 320 (386)
T d1v8za1 241 NDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYV 320 (386)
T ss_dssp TCTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEE
T ss_pred HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEE
T ss_conf 23670599970576643355532000357655551021001068777603443222221245530577888754854999
Q ss_pred -----------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~VtD~E~~~a~~~La~~EGI~~~~~sa~alA~a~kla~~~~~~~~VV~iltG~G~kD~~~~~~~~g 386 (386)
T d1v8za1 321 TVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSRDEIIIVNLSGRGDKDLDIVLKVSG 386 (386)
T ss_dssp EEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTSCTTCEEEEEECBBSGGGHHHHHHHHC
T ss_pred EECHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHCC
T ss_conf 989999999999999965993566799999999998787199897999968885212999998539
|
| >d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces olivochromogenes [TaxId: 1963]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Xylose isomerase domain: D-xylose isomerase species: Streptomyces olivochromogenes [TaxId: 1963]
Probab=100.00 E-value=0 Score=29094.51 Aligned_cols=1 Identities=0% Similarity=1.035 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~p~~~~rF~~~~Wt~~~~g~dpFG~~tr~~~~~~d~~~~~~~lG~~~~~fHd~D~~P~~~~~~e~~~~~~~i~~~l~~ 80 (386)
T d1muwa_ 1 SYQPTPEDRFTFGLWTVGWQGRDPFGDATRPALDPVETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRFRQALDA 80 (386)
T ss_dssp CCCCCGGGCEEEEHHHHTCCCCBTTBCCSSCCCCHHHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99898445335886205765879999888999898999999998599879747775688899867889999999999985
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~Gl~~~~~t~nlf~~p~~~~Ga~tspD~~vR~~Ai~~~k~aiDia~~LGa~~vv~W~G~~G~~~~~~~d~~~~~~~l~e~ 160 (386)
T d1muwa_ 81 TGMTVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEA 160 (386)
T ss_dssp HTCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCTTCEESSTTSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCEECCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 29701134156410200113787792999999999999999999998399848984787755677667999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 l~~v~dya~~~g~~v~~~IEpkP~EP~~~~~~~t~~~al~~l~~~g~~~~~glnlD~gHa~~ag~~~~~~ia~a~~~grL 240 (386)
T d1muwa_ 161 FDLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKL 240 (386)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCSSSSSSEESSCSHHHHHHHHTTSSSGGGEEECCBHHHHHTTTCCHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCEECCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCE
T ss_conf 99999999972999369982057887553310769999999997299531346644465330477715899999873867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~vhlNd~~~~~~D~DL~fG~~~~~~~~~~~~~L~~~Gy~G~~~FD~k~~R~~~~~~~~~~~~~~m~~~a~~~~~a~~~~ 320 (386)
T d1muwa_ 241 FHIDLNGQSGIKYDQDLRFGAGDLRAAFWLVDLLESAGYEGPRHFDFKPPRTEDIDGVWASAAGCMRNYLILKERAAAFR 320 (386)
T ss_dssp CCCEECBCCSSSSCCCBCTTSSSHHHHHHHHHHHHHHTCCSCEEECCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34211533477743456676401789999999999559988330540367788766799999999999999999999865
Q ss_pred -----------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~d~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~e~Le~l~~~~l~g~r 386 (386)
T d1muwa_ 321 ADPEVQEALRASRLDELAQPTAADGVQELLADRTAFEDFDVDAAAARGMAFERLDQLAMDHLLGAR 386 (386)
T ss_dssp HCHHHHHHHHHTTHHHHTSCSCTTCHHHHHHCGGGTTTCCHHHHHHSCCCHHHHHHHHHHHHHTCC
T ss_pred HCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 499999999986554113544445256677776520013813343255029999999999971379
|
| >d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Arginase/deacetylase superfamily: Arginase/deacetylase family: Histone deacetylase, HDAC domain: Histone deacetylase 7, HDAC7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=29093.65 Aligned_cols=1 Identities=0% Similarity=0.537 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~Tg~vyd~~~l~H~~~~g~~~~HPE~p~Rl~~i~~~L~~~gl~~~~~~~~p~~a~~~~L~~vH~~~YI~~l~~~~~ 80 (386)
T d3c10a1 1 TLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPL 80 (386)
T ss_dssp CCTTCEEEECCGGGGGCCCTTCCGGGCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHHHHHCCTT
T ss_pred CCCCCEEEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHCCHHHHHHHHHCHH
T ss_conf 99887799977788557899999899897989999999999966996578376789899999988299999999862605
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~Aa~~aaG~~~~a~~~v~~~~~~~afa~~rppGHHA~~~ 160 (386)
T d3c10a1 81 SRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHS 160 (386)
T ss_dssp CSCCCCHHHHHHHHHC---CBCTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCCTTCBTT
T ss_pred HHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 43112233321034555420367777666888645761089999998457888776542376544441244323545655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~GFC~fNdvAiaa~~l~~~~~~~rV~iiD~DvHhGnGTq~if~~~~~V~~~SiH~~~~~~~~p~tG~~~e~G~g~g~g 240 (386)
T d3c10a1 161 TAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEG 240 (386)
T ss_dssp BCBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECTTTTSTTCCCCTTCCCCGGGTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
T ss_conf 66873433288999999986214677437742467887604676425543354333566545678889887638877766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~n~pl~~~l~~~~~d~~yl~~~~~~l~~~~~~f~PdlIvvsaG~D~~~~D~~pLg~l~lt~~~~~~~~~~l~~~~~~~ 320 (386)
T d3c10a1 241 FNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGA 320 (386)
T ss_dssp CEEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSGGGC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 64456410136799983999999999999999866998899968825334675356367558999999999999873998
Q ss_pred -----------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~ 386 (386)
T d3c10a1 321 VVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQR 386 (386)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHHHHTCCCCGGGCSGGGSCCCHHHHHHHHHHHHHHTTTCGGGCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 799968888865899999999999838999987841013588888999999999999886076329
|
| >d1v5da_ a.102.1.2 (A:) Chitosanase {Bacillus sp., strain k17 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Chitosanase species: Bacillus sp., strain k17 [TaxId: 1409]
Probab=100.00 E-value=0 Score=29092.94 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~pfp~~~~y~~~~~~~~~~q~~~~~~~~~~y~~wk~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~t~SEGqgYGM 80 (386)
T d1v5da_ 1 AKEMKPFPQQVNYAGVIKPNHVTQESLNASVRSYYDNWKKKYLKNDLSSLPGGYYVKGEITGDADGFKPLGTSEGQGYGM 80 (386)
T ss_dssp CCCSSCSCCCCCCTTCCCCCSSCHHHHHHHHHHHHHHHHHHHEECCCTTSTTCCEECCCCCCCBTTBCCCEEHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHH
T ss_conf 98788898753536774888667899999999999999999853367777764001465556788898753005888999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 l~Av~~~~~~~nd~~~Fd~lw~wt~~~l~~~~~~L~aW~~~~~~~~v~d~nsAtDgDl~iA~ALl~A~~~Wg~~~~~~Y~ 160 (386)
T d1v5da_ 81 IITVLMAGYDSNAQKIYDGLFKTARTFKSSQNPNLMGWVVADSKKAQGHFDSATDGDLDIAYSLLLAHKQWGSNGTVNYL 160 (386)
T ss_dssp HHHHHTBTTBTTHHHHHHHHHHHHHHTBCSSCTTSBCSEECSSGGGTTTSCCCHHHHHHHHHHHHHHHHHHCSSSSSCHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99998476775619999999999999860679998668857999877799988768999999999999774885178999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~A~~ii~~i~~~~~~~~~~~l~~g~~~~~~~~~~npSY~~p~~~~~fa~~~~d~~W~~v~~~~~~ll~~~~~~~~~~tG 240 (386)
T d1v5da_ 161 KEAQDMITKGIKASNVTNNNQLNLGDWDSKSSLDTRPSDWMMSHLRAFYEFTGDKTWLTVINNLYDVYTQFSNKYSPNTG 240 (386)
T ss_dssp HHHHHHHHHTHHHHHBCTTSSBCSSTTSCTTCCCBCGGGCCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999998750578887426888788898755831054999999997458972999999999999998763188768
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 L~PDw~~~~~~~~~~~~~~~~~~~~~~~~ydA~Rvpl~la~d~~w~g~~~a~~~~~~~~~f~~~~~~~~~~~i~~~y~l~ 320 (386)
T d1v5da_ 241 LISDFVVKNPPQPAPKDFLDESEYTNAYYYNASRVPLRIVMDYAMYGEKRSKVISDKVSSWIQNKTNGNPSKIVDGYQLN 320 (386)
T ss_dssp CCCSSEETTTTEECCTTGGGSCTTTTSBCTTGGGHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTTCGGGCCSCBCTT
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99631212786767765677777888724119999999998886427804789999999999986147976556632147
Q ss_pred -----------------------------------------------------------------C
Q ss_conf -----------------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 G~~~~~~~~~~~~a~~~~aa~~~~~~~~~~~~~~~~~~~~~~~YY~~~L~Ll~ll~lsGn~~~p~p 386 (386)
T d1v5da_ 321 GSNIGSYPTAVFVSPFIAASITSSNNQKWVNSGWDWMKNKRERYFSDSYNLLTMLFITGNWWKPVP 386 (386)
T ss_dssp SCBCCCSCCHHHHHHHHHTTTTCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 742688875899999999862873169999998733357778857999999999997388888998
|
| >d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Klebsiella aerogenes [TaxId: 28451]
Probab=100.00 E-value=0 Score=29029.61 Aligned_cols=1 Identities=100% Similarity=1.101 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 GiDtHvHfi~Pqq~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~~~~ml~a~d~~P~N~g~~gkGn~s~~~~l~eqi 80 (385)
T d1ejxc2 1 GIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGLLGKGNVSQPDALREQV 80 (385)
T ss_dssp EEEEEEECSCTTHHHHHHHTTEEEEEEECCSSSHHHHHSSCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSSHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 95545334488789999866973663686688877777573888899999998655078331052116669868999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~AGa~GlKiHEDwGatpa~id~~L~vad~~dvqv~iHtDtlNE~gfvedT~~a~~gRtiH~~H~EGaGGGHAPDii~~~~ 160 (385)
T d1ejxc2 81 AAGVIGLKIHEDWGATPAAIDCALTVADEMDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACA 160 (385)
T ss_dssp HHTCSEEEEEGGGCCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEESSTTSTTSSSTTTGGGGGG
T ss_pred HHHHCEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHC
T ss_conf 71132144775235675899999876754183589760535400200214887579730332025677786631567624
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~nvlpsSTnPT~P~t~nt~~EhldMlmvcHhL~~~ipeDvafAesRiR~eTiaAEdvLhD~GaiSi~sSDsQaMGRvGE 240 (385)
T d1ejxc2 161 HPNILPSSTNPTLPYTLNTIDEHLDMLMVCHHLDPDIAEDVAFAESRIRRETIAAEDVLHDLGAFSLTSSDSQAMGRVGE 240 (385)
T ss_dssp CTTEEEEEESTTSSCBTTHHHHHHHHHHHC----------CHHHHHHSCHHHHHHHHHHHHTTSSCEEECCTTSSSCTTC
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 68535789998878866736764772332046898875677664233530123267776345743442153332576774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 vi~RtwqtA~kmk~~rG~l~~d~~~~DN~RvkRYIAKYTINPAIahGIsh~VGMFGA~G~A~~~tSvtFVSqaAid~gi~ 320 (385)
T d1ejxc2 241 VILRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAHEVGMFGALGSARHHCRLTFLSQAAAANGVA 320 (385)
T ss_dssp HHHHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHHHHTHHHHHHTTCTTTSSCGGGSHHHHHHHCEEEECHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCEECCCCCCCCCCCCCCEEEECHHHHHCCCH
T ss_conf 11020787999987603687777777624777666662368188768455135323456555457138856888867684
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~LgL~K~lvpVkn~R~ItK~DM~~Nda~P~IeVDPeTYeV~aDGelltcePA~~LPLAQRYFLF 385 (385)
T d1ejxc2 321 ERLNLRSAIAVVKGCRTVQKADMVHNSLQPNITVDAQTYEVRVDGELITSEPADVLPMAQRYFLF 385 (385)
T ss_dssp HHTTCCSEEEECCCTTTCCGGGSTTCCCCCCEEECTTTCCEEETTEECCCCCBSSCSSSTTTCCC
T ss_pred HHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCEEEEECCEECCCCCCCCCCCHHCCCCC
T ss_conf 77388760686148887787786015789982789997689989999046765667631110176
|
| >d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RNB domain-like domain: Exoribonuclease 2, RNB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29022.84 Aligned_cols=1 Identities=100% Similarity=0.803 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 e~~~~~~~~~~~~~~~R~Dl~~l~~~tID~~~a~d~DDAisie~~~~~~~~l~VHIADva~~v~~~s~Ld~~A~~R~~S~ 80 (385)
T d2ix0a4 1 EAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTN 80 (385)
T ss_dssp SCCCCCCCCCCCCCCCCEECTTSCCBEEECSSCCCCCEEEEEEEEGGGEEEEEEEECCGGGTSCTTSHHHHHHHHHCBCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCHHHHHCCCCHHHHHHHHHCCCE
T ss_conf 99875431001467874208899989976999942665589999689919999998777887598999999999968838
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 Ylp~~~~pMLP~~ls~~~~SL~~~~~r~a~s~~~~l~~~g~i~~~~~~~~s~I~s~~~ltY~~v~~~l~~~~~~~~~~~~ 160 (385)
T d2ix0a4 81 YLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEA 160 (385)
T ss_dssp EETTEEECSSCHHHHHTTSSCCTTCEEEEEEEEEEECTTCCBCSCCEEEEEEEECCCEEEHHHHHHHHTTCSSCCCSSHH
T ss_pred ECCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEECCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCCCHHH
T ss_conf 89999778898166420014566532047778999856761401336876789726757499999997403334532022
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~l~~L~~~~~~lr~~R~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~lieE~MilaN~~va~~l~~~~~~~i 240 (385)
T d2ix0a4 161 IAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAARVLRDKLGFGI 240 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCCCCCEEEEEECTTSCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 59999999999999999874167621343022010244455413787404088888888887766899999997348873
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~R~~~~p~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~a~ys~~~~~H~gLgl~~Y 320 (385)
T d2ix0a4 241 YNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAY 320 (385)
T ss_dssp EEEBCCSCGGGHHHHHHHHHHTTCCCCTTGGGSHHHHHHHHHHHHHSSSSHHHHHTGGGCCCCEEESSCCCBTTTTBSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCC
T ss_conf 22222357477899999999710366855334625677776520355416789999998643103798877413084612
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 thfTSPIRRY~DLivhrqL~a~L~~~~~~~~~~ei~~~~~~~~~~a~~aer~~~~~~~~~~lk~~ 385 (385)
T d2ix0a4 321 ATWTSPIRKYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDK 385 (385)
T ss_dssp BCCSCTTTBHHHHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred EEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 01586776377899999999997699999889999999999999999999999999999985789
|
| >d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Lactaldehyde reductase FucO species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=29021.80 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 m~~~~~~~~~~~fG~g~l~~l~~~l~~~G~k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~ 80 (385)
T d1rrma_ 1 MANRMILNETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGL 80 (385)
T ss_dssp CCEEEECCSEEEESTTGGGGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHH
T ss_pred CCCEEECCCCCEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 99526669972798689999999999769997999989655658089999999987598599986826997989999886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~D~IiaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~lP~i~IPTtagTgse~t~~avi~~~~~~~ 160 (385)
T d1rrma_ 81 GVFQNSGADYLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAAEVTINYVITDEEKRR 160 (385)
T ss_dssp HHHHHHTCSEEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCCTTTCSEEEEEETTTTE
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 54303588889866988422699999999638753026665043222478774674366544643234442224444331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~a~~g~Dal~h~~E~~~s~~~~p~~~~~a~~a~~~~~~~l~~~~~~~~~~~~ 240 (385)
T d1rrma_ 161 KFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYITRGAWALTDALHIKAIEIIAGALRGSVAGDKDAGE 240 (385)
T ss_dssp EEEEECGGGCCSEEEECGGGTTTSCHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred EEEEEEEECCCCCCCCHHHHHCCCCHHEEEECHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 01355420135322006777327980126400364664112111113320001277899999999752432000056899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~a~~~ag~~~~~~~~g~~hai~~~l~~~~~i~HG~a~ai~lp~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 320 (385)
T d1rrma_ 241 EMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPHGVANAILLPHVMRYNADFTGEKYRDIARVMGVKVEGMSLEEARN 320 (385)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHTTCCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 99999999976651676400053203200233457510001436889987335269999999998388656999899999
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~i~~i~~~~~~lglP~~L~d~Gv~~~~l~~ia~~a~~~~~~~~nP~~~t~~di~~il~~a~~g~ 385 (385)
T d1rrma_ 321 AAVEAVFALNRDVGIPPHLRDVGVRKEDIPALAQAALDDVCTGGNPREATLEDIVELYHTAWEGG 385 (385)
T ss_dssp HHHHHHHHHHHHTTCCSSGGGGTCCGGGHHHHHHHHHTCGGGGGCSSCCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999999859999988829899999999999985720059994389999999999997489
|
| >d1uhga_ e.1.1.1 (A:) Ovalbumin {Hen (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Ovalbumin species: Hen (Gallus gallus) [TaxId: 9031]
Probab=100.00 E-value=0 Score=29021.34 Aligned_cols=1 Identities=100% Similarity=1.998 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 ~~l~~~~~~Fa~~l~~~l~~~~~~~N~v~SP~si~~~Laml~~GA~g~T~~el~~~L~~~~~~~~~~~~~~~~~~~~~~~ 80 (385)
T d1uhga_ 1 GSIGAASMEFCFDVFKELKVHHANENIFYCPIAIMSALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNVH 80 (385)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCTTSCEEECHHHHHHHHHHHHTTCCHHHHHHHHHHHTCTTCTTCSHHHHTTTTSCTTTT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHH
T ss_conf 96789999999999999861396986998889999999999986775899999997388877664301444203388999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~l~v~~~~~~~~~f~~~~~~~y~~~~~~~df~~~~~~a~~~IN~wv~~~T~g~i~~~ 160 (385)
T d1uhga_ 81 SSLRDILNQITKPNDVYSFSLASRLYAEERYPILPEYLQCVKELYRGGLEPINFQTAADQARELINSWVESQTNGIIRNV 160 (385)
T ss_dssp HHHHHHHHHHTSCCSSEEEEEEEEEEEETTSCBCHHHHHHHHHHCSSCEEEECCTTTHHHHHHHHHHHHHHHTTTCSCCC
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999963899873699998888866765448899999987097334564311799999999999998706886566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 v~~~~l~~~t~l~lina~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~v~~m~~~~~~~~~~~~~~~~~~v~Lpy~~~~~s 240 (385)
T d1uhga_ 161 LQPSSVDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTEQESKPVQMMYQIGLFRVASMASEKMKILELPFASGTMS 240 (385)
T ss_dssp SCTTSSCTTCCEEEEEEEEEEECEEECCCGGGCEEEEECCCC--CEEEEEEEEEEEEEEEEEGGGTEEEEEEEBTTSSEE
T ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEHHHEECCCCCCCCCCCCCCEEEECCCCCCCEE
T ss_conf 78667896544114542799542046664555540664258994353002001021234545566817887132489758
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 m~iilP~~~~~l~~~~~~l~~~~l~~~~~~~~~~~~~v~l~lPkF~i~~~~dl~~~L~~lGl~~~F~~~adfs~is~~~~ 320 (385)
T d1uhga_ 241 MLVLLPDEVSGLEQLESIINFEKLTEWTSSNVMEERKIKVYLPRMKMEEKYNLTSVLMAMGITDVFSSSANLSGISSAES 320 (385)
T ss_dssp EEEEEESSTTCHHHHHHHCCHHHHHHHTSTTTCEEEEEEEEEECEEEEEEEEHHHHHHHHTCCGGGSTTCCCTTTBCSTT
T ss_pred EEEEECCCCCCHHHHHHHCCHHHHHHHHHHHCCCCEEEEEEEEEEEEECCEEHHHHHHHCCCCHHHCCCCCCCCCCCCCC
T ss_conf 99997776676155554213556999763430424599997104876311007998875598111068787656779998
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 l~vs~i~q~~~i~v~E~Gt~a~a~t~~~~~~~~~~~~f~~drPF~f~I~~~~t~~~lf~G~v~~P 385 (385)
T d1uhga_ 321 LKISQAVHAAHAEINEAGREVVGSAEAGVDAASVSEEFRADHPFLFCIKHIATNAVLFFGRCVSP 385 (385)
T ss_dssp CCEEEEEEEEEEEECSCEEECCCHHHHHHHHTTCCCEEECCSCEEEEEEETTTCCEEEEEEESCC
T ss_pred CEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCC
T ss_conf 06552788999998998713010120001367899779913999999998999968999994398
|
| >d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHH phosphoesterases superfamily: DHH phosphoesterases family: Exonuclease RecJ domain: Exonuclease RecJ species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29020.48 Aligned_cols=1 Identities=0% Similarity=-1.224 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
+
T Consensus 1 ~~~~~~l~~m~~A~~~i~~ai~~~e~I~I~gDyD~DGitS~aIl~~~L~~~g~~~~~~Ip~R~~eGyGl~~~~i~~~~~~ 80 (385)
T d1ir6a_ 1 PLALLPLKGLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLEA 80 (385)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEECCCTTTSCSSCCGGGHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHC
T ss_conf 97676735899999999999977997999927786067999999999998899759987786656998689999998533
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~LiItvD~G~~~~e~i~~~~~~gi~vIv~DHH~~~~~~~~~~iv~~~~~~~~~~~~~gaGva~~l~~~l~~~~~~~~~~ 160 (385)
T d1ir6a_ 81 SDLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPDLKEKPTGAGVAFLLLWALHERLGLPPPL 160 (385)
T ss_dssp CSEEEESSCCTTCGGGHHHHTTSCCEEEEECCSCCCSSCCSSEEECGGGSTTCCCCCCHHHHHHHHHHHHHHTTTCCCCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCHH
T ss_conf 77699823652203667667632872321465465657401212157678850101302578999999886432442202
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~l~L~aiGtiaD~~pL~~eNR~lv~~gl~~~~~~~~~g~~~L~~~~~~~~~~~di~f~i~P~iNA~GRl~~a~~a~~lL 240 (385)
T d1ir6a_ 161 EYADLAAVGTIADVAPLWGWNRALVKEGLARIPASSWVGLRLLAEAVGYTGKAVEVAFRIAPRINAASRLGEAEKALRLL 240 (385)
T ss_dssp GGHHHHHHHHHHTTCCCSSHHHHHHHHHHHHCTTCSCHHHHHHHHHTTCCSCSHHHHHTHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 44455456455455401367889987777785114558899997542213201221111131113334444310212444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~a~~~a~~l~~~N~~Rk~~~~~i~~~a~~~~~~~~~~i~~~~~~~~~GviGivAsrl~~~~~kP~iv~~~~kGS 320 (385)
T d1ir6a_ 241 LTDDAAEAQALVGELHRLNARRQTLEEAMLRKLLPQADPEAKAIVLLDPEGHPGVMGIVASRILEATLRPVFLVAQGKGT 320 (385)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCTTSSSEEEECTTCCHHHHHHHHHHHHHHHCSCEEEEETTEEE
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCEEE
T ss_conf 41236789999999887777899999999999875430335159995377662022045899999729978999667387
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~Rs~~g~~l~~~l~~~~~~l~~~GGH~~AaG~~i~~~~~~~F~~~l~~~~~~~~~~~~~~~~~d~ 385 (385)
T d1ir6a_ 321 VRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDEALFPAFKARVEAYAARFPDPVREVALLDL 385 (385)
T ss_dssp EECCSSCCHHHHHHTTGGGCSEEEECSSEEEEECCGGGHHHHHHHHHHHHHSSCCTTTTCCSTTC
T ss_pred EECCCCCCHHHHHHHHHCHHHCCCCHHHCCEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC
T ss_conf 76899978999999874530137991670467974989999999999999856353220442479
|
| >d1xmxa_ c.52.1.26 (A:) Hypothetical protein VC1899 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Restriction endonuclease-like superfamily: Restriction endonuclease-like family: Hypothetical protein VC1899 domain: Hypothetical protein VC1899 species: Vibrio cholerae [TaxId: 666]
Probab=100.00 E-value=0 Score=29020.20 Aligned_cols=1 Identities=0% Similarity=0.404 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~m~~hv~~i~~~~~~n~~p~l~~~~~p~~~v~i~t~~~~~~~e~L~~~lk~~~i~~e~~~i~~~~d~~~I~~~l~~~~~ 80 (385)
T d1xmxa_ 1 NAMAIHVGIIDQDPVRLVTPLLDHRTVSRHIIFIGDHTQTVIYQRLSDVLNKRNISTDFFEIPAGSNTSAIKSAIRELAE 80 (385)
T ss_dssp CTTEEEEEECCSSCHHHHHHHHSTTCCCCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 96289999963772435568654788886699996743699999999999846986168745875576999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~v~lN~TGGTK~Msl~ay~~~r~~~~~~~Y~d~~~~rl~~l~~~~~~~~~~~~~i~i~d~l~~~~~~~~~~~~ 160 (385)
T d1xmxa_ 81 TLKARGEEVKFNASCGLRHRLLSAYEVFRSYHWPIFVVEPNSDCLCWLYPEGNNDTQVQDRITIADYLTIFGARGEFNEH 160 (385)
T ss_dssp HHHHHTCEEEEECSSSCHHHHHHHHHHHHHTTCCEEEECTTTCEEEEEESTTSCCEECCCCCCHHHHHHHTTCEEECC--
T ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCHHCCCC
T ss_conf 62203873999916766888999999998559846999769966999667767675577878899999984033000566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~el~~~l~~ln~~~~~~~~~~~~~~~~s~~~~~~~~~~~ll~~l~~~~~~~~~~~~l~F 240 (385)
T d1xmxa_ 161 QLSPQLDQQLYQLGERWASNALELGPGLATLNYLATTCRKEQKLDVELSDKQQGYRELNLLLSDLVEAKIASYENGILTF 240 (385)
T ss_dssp --CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSEEECCHHHHTCHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCEEEE
T ss_conf 68866789999999998634776767999999986512212010244462244536788999988753432214863231
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~a~~Fl~G~WLE~yv~~~l~~~~~~~~~~~d~~~~v~i~~~~~~~~~~nElDv~~~~~~~l~~IECKt~~~~~~~~~ 320 (385)
T d1xmxa_ 241 INEEARRFANGEWLETLVHSTVKQIQDDMPTIQDRSLNVQVYRQLGEREVRNELDVATVVNNKLHIIECKTKGMRDDGDD 320 (385)
T ss_dssp SSHHHHHHHHTTHHHHHHHHHHHHHHTTCTTEEEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEESSCCCC-CCC
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCHHH
T ss_conf 41778743588089999999999877540445026767798326888765532689999799999999568887754578
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~l~kl~~l~~~lgG~~~r~~LVs~~~~~~~~~~ra~~~~i~vI~~~~l~~l~~~L~~w~~~~~~~ 385 (385)
T d1xmxa_ 321 TLYKLESLRDLLGGLQARAMLVSFRPLRHNDITRAEDLGLALIGPDELKDLKTHLTQWFKAAGGN 385 (385)
T ss_dssp HHHHHHHHHHHHHGGGCEEEEEESSCCCHHHHHHHHHHTCEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89999999998289532499999058847799999866949983888899999999999973799
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=100.00 E-value=0 Score=29016.32 Aligned_cols=1 Identities=100% Similarity=2.696 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 ~~~~~~~~~p~~~~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t 80 (385)
T d1cf3a1 1 GIEASLLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYET 80 (385)
T ss_dssp CHHHHSBCCGGGTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEEC
T ss_pred CCCHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 96605218912126996889998968899999999987879829998889998787832048767755218978768605
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~r~~~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~ 160 (385)
T d1cf3a1 81 VELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNA 160 (385)
T ss_dssp CCCTTTSCCCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCG
T ss_pred CCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 57677894365221002466512331353215866611210036878676336688999887610787311221122355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~g~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~d~n~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~nl 240 (385)
T d1cf3a1 161 SCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNL 240 (385)
T ss_dssp GGSCSSSSEEEBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSCCCEEECCCBSBCTTCBBCCHHHHHTGGGTTCTTE
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHCCCCC
T ss_conf 55677543334565545556878999999999769997677555665533223332322333223556533732107743
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~SGIGp~~~L~~~gI~~~~dlP~ 320 (385)
T d1cf3a1 241 QVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPV 320 (385)
T ss_dssp EEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCCT
T ss_pred CCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEECCEEEECCCHHHCHHHHHHCCCCCHHHHHHCCCCEEEECCC
T ss_conf 33377368888871899654799999986899789999688899868535499999865998378998779986998974
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 g~~~~~~~~~~~vv~~~~~v~g~~~lr~v~~s~~p~~~~~~~~~~~~~~a~~~~d~i~~~~~~~~ 385 (385)
T d1cf3a1 321 GLCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYASMQ 385 (385)
T ss_dssp TCTCBSCGGGTCSBCTTSBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 04206887766614665542660571742575786212675148799985366789998775449
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=100.00 E-value=0 Score=29015.50 Aligned_cols=1 Identities=0% Similarity=-1.621 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ipmrDG~~L~~~v~~P~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~ 80 (385)
T d2b9va2 1 HDPLSVQTGSDIPASVHMPTDQQRDYIKREVMVPMRDGVKLYTVIVIPKNARNAPILLTRTPYNAKGRANRVPNALTMRE 80 (385)
T ss_dssp CCTTTCCCSCSCC---------CCSEEEEEEEEECTTSCEEEEEEEEETTCCSEEEEEEEESSCHHHHTCSSTTCSSHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 99754345777786665887667797686889989999889999997189996018999816788876556775322354
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~a~~Gy~vv~~d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~ 160 (385)
T d2b9va2 81 VLPQGDDVFVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGF 160 (385)
T ss_dssp HSCGGGHHHHHTTCEEEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHH
T ss_pred CCCHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHH
T ss_conf 43057999996896899976774368898512045210011220155787799999999856674446410045667899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~a~~~~~~l~a~~~~~~~~d~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (385)
T d2b9va2 161 TVVMALLDPHPALKVAAPESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFAT 240 (385)
T ss_dssp HHHHHHTSCCTTEEEEEEEEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCH
T ss_conf 99999854677634999812456532101234773011210899986541014586411114678889987252445320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~p~~~~~~~~p~~d~~w~~~s~~~~~~~~~i~vP~l~~~g~~dd~~~~g~~~~~~~l~~~~~~~~~~LiiGPw~ 320 (385)
T d2b9va2 241 QAGLDQYPFWQRMHAHPAYDAFWQGQALDKILAQRKPTVPMLWEQGLWDQEDMWGAIHAWQALKDADVKAPNTLVMGPWR 320 (385)
T ss_dssp HTTGGGCHHHHHHHHCCSSSHHHHTTCHHHHHHHHCCCSCEEEEEETTCSSCSSHHHHHHHHHHHTTCSSCEEEEEESCC
T ss_pred HCCCCHHHHHHHHCCCCCCCHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 10442134566530376543122315846888633556762899841368765433789999875156888579993776
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------~ 1082 (1223)
=
T Consensus 321 H~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~WFD~~LKG~~~~~~~p~v~~~~~G~~~Wr~~~~W 385 (385)
T d2b9va2 321 HSGVNYNGSTLGPLEFEGDTAHQYRRDVFRPFFDEYLKPGSASVHLPDAIIYNTGDQKWDYYRSW 385 (385)
T ss_dssp TTGGGSCCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEEETTTTEEEEESSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEECCCC
T ss_conf 77866566666664567520013689999999999708999999999879998789827418979
|
| >d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp175a1 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=29015.56 Aligned_cols=1 Identities=0% Similarity=-0.759 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~dp~~~~~~~~~kyg~v~~~~~~~p~v~v~dp~~v~~il~~~~~~~~~~~~~~~~~~~G~gl~ 80 (385)
T d1n97a_ 1 MKRLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRGLL 80 (385)
T ss_dssp CEECCHHHHHHHHHHHHHCHHHHHHHHHHHCSEEEECCTTCCEEEECSHHHHHHHHHCTTEECCSHHHHHHHHHHCSSTT
T ss_pred CCCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCCEEEEECCEEEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCEE
T ss_conf 98888553538799987799999999999789789996998799989999999997289977688607779998579500
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~g~~wk~~R~~l~~~f~~~~l~~~~~~~~~~~~~l~~~l~~~~vdl~~~l~~~~~~vi~~~~fg~~~~~~~~~~~~~~ 160 (385)
T d1n97a_ 81 TDWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWRGEERDLDHEMLALSLRLLGRALFGKPLSPSLAEHALKA 160 (385)
T ss_dssp TCCHHHHHHHHHHHCGGGSHHHHHTTHHHHHHHHHHHHHTCCSCCEEHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 37979999999997234144432231025778999987650455335788888875520255553465432015666665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~~~~~l~ag~dTt~~~l~~~l~~L~~~ 240 (385)
T d1n97a_ 161 LDRIMAQTRSPLALLDLAAEARFRKDRGALYREAEALIVHPPLSHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHR 240 (385)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHGGGTTSTTGGGSCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 56777777666665455899999986515678899887511104697889999999988765024211211025676541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 P~v~~~l~~E~~~~~a~i~EtlRl~p~~~~~~r~~~~d~~~~g~~i~~g~~v~~~~~~~~~~~~~dp~~F~PeRf~~~~~ 320 (385)
T d1n97a_ 241 PDWQKRVAESEEAALAAFQEALRLYPPAWILTRRLERPLLLGEDRLPPGTTLVLSPYVTQRLHFPDGEAFRPERFLEERG 320 (385)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHSCSSCCEEEEESSCEEETTEEECTTCEEEECHHHHHHHSSTTTTSCCTTHHHHSCC
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 02333333333332101201122333332212233322233333333333333332210011478876638432376567
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~lpFG~G~r~C~G~~la~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~p~~~~~~r~r~ 385 (385)
T d1n97a_ 321 TPSGRYFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLPFPRVLAQVTLRPEGGLPARPRE 385 (385)
T ss_dssp CCBTTBCTTCCSTTCCTTHHHHHHHHHHHHHHHHTTCBCCCCCCCCEEESSSEEETTCCEECCBC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCEEEEECCCEEEEEEC
T ss_conf 88887067899765690399999999999999998378896898732460578646981788609
|
| >d2c5wb1 e.3.1.1 (B:266-650) Penicillin-binding protein 1a, transpeptidase domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Penicillin-binding protein 1a, transpeptidase domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=29013.67 Aligned_cols=1 Identities=0% Similarity=0.404 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~yp~~~d~~~~e~i~~~~~~~~~~~~~~G~~I~tTiD~~lQ~~~e~~~~~~~~~~~~~~~~~~a~vv~d~~TG~IlA~v 80 (385)
T d2c5wb1 1 SNYPAYMDNYLKEVINQVEEETGYNLLTTGMDVYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQL 80 (385)
T ss_dssp CCSCGGGHHHHHHHHHHHHHHHSCCTTTSCEEEEECCCHHHHHHHHHHHHCSSSCCCSCSSCEEEEEEEETTTCBEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEE
T ss_conf 99748999999999998777644232069987994789999999999997534312678663289999988999399999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~N~a~~~~~~pGStfKp~~~yaaAle~g~~~~~~~~~~d~~~~~~~~~~~~~n~~~~~~G~itl~~al 160 (385)
T d2c5wb1 81 GARHQSSNVSFGINQAVETNRDWGSTMKPITDYAPALEYGVYESTATIVHDEPYNYPGTNTPVYNWDRGYFGNITLQYAL 160 (385)
T ss_dssp CCSSCCCCCTTCCCTTTCCCSCCGGGHHHHHTHHHHHHTTSCSBSSCEEEESSCBCTTSSCBCCCTTSCCCEEEEHHHHH
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHH
T ss_conf 55655544434543201143467740447899999986497002331123454211136866422465565136650333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~S~N~~~~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~tplqla~aya~iAngG~~~~P~~i~~i 240 (385)
T d2c5wb1 161 QQSRNVPAVETLNKVGLNRAKTFLNGLGIDYPSIHYSNAISSNTTESDKKYGASSEKMAAAYAAFANGGTYYKPMYIHKV 240 (385)
T ss_dssp HTTCHHHHHHHHHHHCHHHHHHHHHTTTCBCSSCCGGGGSCCCCSSCCSSBSCCHHHHHHHHHHHHTTSEEECCBSEEEE
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 31655300345666403368999997087545653223445441135885256899999988765147643221430122
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~d~~~~~~~~~~~~~~v~s~~~a~~~~~~m~~vv~~GT~~~a~~~~~~vaGKTGTaq~~~~~~~~~~~~~~~~~~d~WFv 320 (385)
T d2c5wb1 241 VFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVLTYGTGRNAYLAWLPQAGKTGTSNYTDEEIENHIKTSQFVAPDELFA 320 (385)
T ss_dssp EETTSCEEECCCCEEECSCHHHHHHHHHHHHHHHHHSTTGGGCCTTCCCEEEEEECCCCHHHHHHTCCCSSCEESCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 12344422123455420477888888764110135775221356565313565565666665444435564222205999
Q ss_pred ----------------------------------------------------------------C
Q ss_conf ----------------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 G~~P~~~~~Vwvg~~~~~~~~~~~G~~~Aapi~~~im~~~~~~~~~~~f~~P~gi~~~g~~~~~~ 385 (385)
T d2c5wb1 321 GYTRKYSMAVWTGYSNRLTPLVGNGLTVAAKVYRSMMTYLSEGSNPEDWNIPEGLYRNGEFVFKN 385 (385)
T ss_dssp EECSSEEEEEEEECSSTTSCEEGGGGGHHHHHHHHHHHHHHSSSCCCCCCCCTTEEEETTEEEEC
T ss_pred ECCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCEEEECC
T ss_conf 55998899999940788887688722889999999999997269977799999867767089529
|
| >d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Ferritin-like superfamily: Ferritin-like family: Ribonucleotide reductase-like domain: Methane monooxygenase hydrolase beta subunit species: Methylococcus capsulatus [TaxId: 414]
Probab=100.00 E-value=0 Score=28948.15 Aligned_cols=1 Identities=100% Similarity=0.803 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~a~~~~~~~~~r~~~~~~~p~~rr~seYE~vT~~~qp~p~~~~~~~~~~~W~~~~~~g~p~y~~ 80 (384)
T d1mtyb_ 1 ERRRGLTDPEMAAVILKALPEAPLDGNNKMGYFVTPRWKRLTEYEALTVYAQPNADWIAGGLDWGDWTQKFHGGRPSWGN 80 (384)
T ss_dssp CCCCTTTCHHHHHHHHHHCCSSCSCSCCCTTTTSCCSSSSCCHHHHHHTTCSCCBTTSTTCCBCSCCSSCCTTCCCSSCG
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCHHHCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 98667998778899861277886667776424467577896643510227889956617767647764613899998886
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~Tal~~~DW~~frDP~q~~yrtY~~~qae~e~~v~~~~d~~~~~~~~~~l~~~w~~~~L~~~l~p~r~~E~ga~~~~a~ 160 (384)
T d1mtyb_ 81 ETTELRTVDWFKHRDPLRRWHAPYVKDKAEEWRYTDRFLQGYSADGQIRAMNPTWRDEFINRYWGAFLFNEYGLFNAHSQ 160 (384)
T ss_dssp GGCSCCCSCTTCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGSCHHHHHTTTTTHHHHHHHHHHHHHHTTHH
T ss_pred CCCEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 64313447746535801889999999999999999999999996696211999999999999860240799999987899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 i~r~~~g~~i~~a~~fqa~DeLR~aQ~i~~~~~~L~~~~pgf~~~~~~~k~~W~~dp~wQg~R~~vE~~l~~~~Dw~E~~ 240 (384)
T d1mtyb_ 161 GAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDESTAVPKAEWTNGEVYKSARLAVEGLWQEVFDWNESA 240 (384)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHCSTTHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 98646868999999998766888999999999999874789862337998886048065779999998987114499999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 vA~Nlv~dpll~~L~~~~f~~~~Aa~nGD~~t~~l~~s~q~D~~Rh~~~~~alvk~~l~~dpe~~~~Nr~llq~Wi~~W~ 320 (384)
T d1mtyb_ 241 FSVHAVYDALFGQFVRREFFQRLAPRFGDNLTPFFINQAQTYFQIAKQGVQDLYYNCLGDDPEFSDYNRTVMRNWTGKWL 320 (384)
T ss_dssp HHHHHTHHHHHHHHHHHTTHHHHGGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99876488644899999999999997698047999999998999999899999999984585332668999999999999
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------------~ 1082 (1223)
|
T Consensus 321 ~~a~~Al~~~~pi~s~~p~~~~~~~~~~a~~~rv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (384)
T d1mtyb_ 321 EPTIAALRDFMGLFAKLPAGTTDKEEITASLYRVVDDWIEDYASRIDFKADRDQIVKAVLAGLK 384 (384)
T ss_dssp HHHHHHHHHHGGGGGGSCTTSCCHHHHHHHHHHHHHHHHHHTGGGGTCCCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 9999999987687610677878889999999999987653024103665458899999972369
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28947.67 Aligned_cols=1 Identities=0% Similarity=-0.692 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~k~~T~~vh~G~~~~~~~gav~pPI~~sst~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~ 80 (384)
T d1cs1a_ 1 RKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHL 80 (384)
T ss_dssp CCHHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBTTBCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH
T ss_pred CCHHHHEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 97404214689898888998259844888746089776568743189887899999999998299706884372799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~i 160 (384)
T d1cs1a_ 81 VTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHL 160 (384)
T ss_dssp HHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHH
T ss_pred HHHHCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCEECCHHHHHHH
T ss_conf 98631445550013465200246665421122333222356788799986216666279971456653010457887554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 a~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~ 240 (384)
T d1cs1a_ 161 AREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLL 240 (384)
T ss_dssp HHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHH
T ss_pred HHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 54148679971553474546664468889998063003667774443345782665420011221122024500389996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~~ 320 (384)
T d1cs1a_ 241 RGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFT 320 (384)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSE
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCE
T ss_conf 12111478998999999999996445886446641223301489998750689861268752466999999998389155
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlEd~eDLi~Dl~~AL~aa~~g 384 (384)
T d1cs1a_ 321 LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANKG 384 (384)
T ss_dssp EBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHTCC
T ss_pred ECCCCCCCCCEECCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 5626687540430661015100799999866989296999865099999999999999986079
|
| >d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe {Aeromonas hydrophila [TaxId: 644]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Aerolisin/ETX pore-forming domain superfamily: Aerolisin/ETX pore-forming domain family: (Pro)aerolysin, pore-forming lobe domain: (Pro)aerolysin, pore-forming lobe species: Aeromonas hydrophila [TaxId: 644]
Probab=100.00 E-value=0 Score=28946.94 Aligned_cols=1 Identities=0% Similarity=-1.623 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ip~~~~~~~~~~d~~~~~~~~v~~~~~fi~pls~LAh~LGY~W~gg~~~q~Vged~~~~r~gd~w~~~~~n~g~c~gyrc 80 (384)
T d3c0na2 1 IPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLAHYLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRC 80 (384)
T ss_dssp CCCCCCEEECSCCHHHHHHHHHTCTTTTHHHHHHHHHHHTBSCCSCTTCSSTTCSEEEEECSSSEEEEECCCSCCCSTTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEECCCCCCEECCCCEEEECCCEEEEECCCCCCCCCEEE
T ss_conf 98654411389987887888762870011569999865073677677874114452566438767996256899774451
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~er~ki~~~nf~~~i~~~~f~~G~~~v~~~epi~t~s~~a~N~sDt~qt~itvt~~~t~T~TWSkT~s~~~s~sV~ik~s 160 (384)
T d3c0na2 81 GDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRGDTATNWSKTNTYGLSEKVTTKNK 160 (384)
T ss_dssp TSCCEEEEEEEEEEEEEEEEEECCCSEEEEEEEEEEEEEEEECSSSCBCCEEEEEEEEEEEEEEECCSSSGGGTCBCSSC
T ss_pred CCCCEEEEEEEEEEECCCCEECCCCEEECCCEEEEEEEEEECCCCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_conf 56215898756778657644427818844542899999997389886158899999998423898654778889999888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 f~iPligeteisvs~S~n~s~s~s~t~S~T~T~t~s~~VtVPP~Skv~V~i~l~rs~idVPYt~t~~I~Ydv~~~gFLRw 240 (384)
T d3c0na2 161 FKWPLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTVPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRW 240 (384)
T ss_dssp EECCCCSSSCCCCEECTTSCGGGCCEEEEEEEECCEECCCBCTTEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEBCT
T ss_pred EECCEEEEEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEC
T ss_conf 85663514469999976788850675137899888876301898359999999866873556899999998987116741
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 gGNa~~~hp~~Rpt~~~tf~~g~~~~~~~~i~yq~d~r~ipg~~~~wdW~w~~~~~g~~~m~~~~~~~~R~~~s~isG~f 320 (384)
T d3c0na2 241 GGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDKRYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVRAGITGDF 320 (384)
T ss_dssp TCCCBTTCCSSCCEEEEEEEESSCCCSTTCHHHHHHTTTCGGGCSSBCHHHHHHHHCHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 56213448988886426886057888743411243202357876511364155553567777777664222346434217
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~a~sq~~g~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 384 (384)
T d3c0na2 321 SAESQFAGNIEIGAPVPLAADSKVRRARSVDGAGQGLRLEIPLDAQELSGLGFNNVSLSVTPAA 384 (384)
T ss_dssp EEEEEEECCCEECCCEEC-----------------CCEEECCCCHHHHHHHTCEEEEEEEEECC
T ss_pred EEEECCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCEEEEEEECC
T ss_conf 8850211015524711158068642346664467863897347977886367674389976389
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=100.00 E-value=0 Score=28941.01 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p 80 (384)
T d1b9ha_ 1 KAPEFPAWPQYDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVP 80 (384)
T ss_dssp CCCCCCCSSCCCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 98989898887999999999999739946568989999999999997969399967889999999998499988989981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~t~~a~~~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ 160 (384)
T d1b9ha_ 81 AFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIMPVHMAGLMADMDALAKISADTGVPLLQDAAHAH 160 (384)
T ss_dssp SSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEC
T ss_conf 43223221222222233211233444435665441020023332222333322233443110222333356553104033
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ga~~~g~~~g~~g~~~~~Sf~~~K~i~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aai 240 (384)
T d1b9ha_ 161 GARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASV 240 (384)
T ss_dssp TCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHH
T ss_pred CCCCCCEECCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 60048983675520000024555434433431243224999998899985689876666432312356632235301213
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 g~~qL~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~GI~~~~~y~ 320 (384)
T d1b9ha_ 241 LRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFR 320 (384)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 33343211321123433446666664225666443222222222333310001000222599999999987998553072
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~~ 384 (384)
T d1b9ha_ 321 AIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVARA 384 (384)
T ss_dssp CGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred CHHCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHCEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 2213978885488744433344679899999839798647999998999999999999999609
|
| >d1hn0a1 a.102.3.2 (A:235-618) Chondroitin ABC lyase I {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Chondroitin ABC lyase I species: Proteus vulgaris [TaxId: 585]
Probab=100.00 E-value=0 Score=28940.02 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~p~~~~T~~~~~~~d~ir~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ng~~~g~pi~~~~~~ 80 (384)
T d1hn0a1 1 EPEIQFHNVKPQLPVTPENLAAIDLIRQRLINEFVGGEKETNLALEENISKLKSDFDALNIHTLANGGTQGRHLITDKQI 80 (384)
T ss_dssp CCCCCCCCCSSCCCCCHHHHHHHHHHHHHHHHHHHSSCCCTTCCCCCCHHHHHHHHHTTCCEECTTSCEECCCEECTTGG
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
T ss_conf 98777677899888896788899999999999872688652157777899999999985686456874247755562012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~aY~~~g~~~~~~el~~~i~~~~d~l~dQg~~~gS~~~~~nww~~~i 160 (384)
T d1hn0a1 81 IIYQPENLNSQDKQLFDNYVILGNYTTLMFNISRAYVLEKDPTQKAQLKQMYLLMTKHLLDQGFVKGSALVTTHHWGYSS 160 (384)
T ss_dssp GGGCGGGSCHHHHHHHTTSEEHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTCSTTCCCSCCTTHHHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCEECCCCCCCCCHHHHHH
T ss_conf 20577676533344431266899999999999999747887322399999999999999872320378777673112238
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 r~~~~a~~Lm~d~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~D~~~t~~~~~l~~~Ll~~d~~e~i~~l~~l~ 240 (384)
T d1hn0a1 161 RWWYISTLLMSDALKEANLQTQVYDSLLWYSREFKSSFDMKVSADSSDLDYFNTLSRQHLALLLLEPDDQKRINLVNTFS 240 (384)
T ss_dssp HHHHHHHHHTHHHHHHTTCHHHHHHHHHHHGGGGHHHHTCCCCTTTTCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 77988999987753226789999999987446864245676677850378999999999999985599199999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~l~~~~~~vt~G~~dGfk~DGS~~qH~~~Y~gYg~~~l~~~~~~~~ll~gT~f~~~~~~~~~l~~~l~~~~~~~~~~~~ 320 (384)
T d1hn0a1 241 HYITGALTQVPPGGKDGLRPDGTAWRHEGNYPGYSFPAFKNASQLIYLLRDTPFSVGESGWNNLKKAMVSAWIYSNPEVG 320 (384)
T ss_dssp HHHHHHHHSCCSTTCSEECTTSCEEETTEECHHHHHHHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHHHHHTBSSBBC
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99887750478887886457887550678774269999999999999967998767989999999999999998454466
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~GR~p~~~~~~~~~~~a~~~~al~g~~~~D~~~A~~ylrl~~~~~~~~~~~~~~~~~pa~~ 384 (384)
T d1hn0a1 321 LPLAGRHPFNSPSLKSVAQGYYWLAMSAKSSPDKTLASIYLAISDKTQNESTAIFGETITPASL 384 (384)
T ss_dssp GGGCTTCTTSCCBGGGGHHHHHHHHTTSTTSCCHHHHHHHHHHHTCCHHHHHHHHSSCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCC
T ss_conf 5555777899875543189999997078866799999999987347785416676158787879
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=100.00 E-value=0 Score=28937.89 Aligned_cols=1 Identities=100% Similarity=2.231 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 G~ID~HvH~rePg~~~~~~~ed~~tgs~AAa~GGvTtvi~mp~~~p~~~~~~~~~~~~~~~~~~~a~~~~~vdy~~~~~~ 80 (384)
T d2fvka2 1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLIL 80 (384)
T ss_dssp CEEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEEEECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEEC
T ss_pred CCEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 92538757788999987610329999999980895599989999999997899999999999999734850206578987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~el~~~~~~~~~~~~Gv~~~k~f~~~~~~~~~~~~l~~~l~~~~~~g~~v~~H~Ed~~~~~~~~~~~~~~ 160 (384)
T d2fvka2 81 FQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPGLQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQ 160 (384)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHCCCEEEEESSSTTTBCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHC
T ss_conf 57787661277877678888705575441213325522344779999999999754982451322078898887777655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 g~~~~~~~~~~rP~~aE~~av~r~~~la~~~g~~lhi~HiSt~~~ve~I~~ak~~G~~Vt~Et~ph~L~l~~~~~~~~~~ 240 (384)
T d2fvka2 161 GLTDAYYHGVSRPSIVEGEATNRAITLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHH 240 (384)
T ss_dssp TCCSTTHHHHTSCHHHHHHHHHHHHHHHHHTTCCEEECSCCCHHHHHHHHHHHHHTCCEEEEECHHHHHCCGGGGSCC--
T ss_pred CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHHCCCHHHCCCCC
T ss_conf 98774332454453213678999999887519607722335612367899853049978998376776146301024442
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~k~~PPLR~~~dr~aL~~~l~dG~Id~IaSDHaP~~~~eK~~~~~~~~~ 320 (384)
T d2fvka2 241 GEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRA 320 (384)
T ss_dssp ------CCSCCGGGSSSSTTTCTTCTTGGGGGCCSSCCCCTTSHHHHHHHHHHTSCSEECCCBCCCBSSCCSSTTBGGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCCCC
T ss_conf 22111223333222122223554310137516976999987789999977447964279627888788883355333333
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~df~~ap~G~~gle~~lpll~~~~v~~~~~~sl~~lv~~~s~nPAki~Gl~p~KGs 384 (384)
T d2fvka2 321 FDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGS 384 (384)
T ss_dssp EEGGGTEESCGGGSCCCBCCTTTHHHHHHHHTTTTTSSSCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 3433345676310999974599899999999986489899999999996999999499998998
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=100.00 E-value=0 Score=28940.54 Aligned_cols=1 Identities=0% Similarity=-1.590 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~pi~~~f~D~~l~~~~~~~l~~~~~~~~~~~~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~ 80 (384)
T d2omza2 1 LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD 80 (384)
T ss_dssp CSCCCCSSCEEHHHHSCSHHHHHHHHHHTTCSSTTSEECHHHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf 97652589998331320889999999986777778863988957878998999898776242458999989681881798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 l~~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 160 (384)
T d2omza2 81 ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160 (384)
T ss_dssp CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86334771101030134333222211123343334433222222222222222211213466313100232222112222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l 240 (384)
T d2omza2 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL 240 (384)
T ss_dssp EEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC
T ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHCC
T ss_conf 21232201111245421101122243332110022353233303577447878644457787888877777896134325
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~ 320 (384)
T d2omza2 241 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 320 (384)
T ss_dssp TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS
T ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEECCCCCCC
T ss_conf 65341004467447877535546687754567445787732356522223323233333221000024676777788778
Q ss_pred ---------------------------------------------------------------C
Q ss_conf ---------------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~Na 384 (384)
T d2omza2 321 DISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 384 (384)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCEE
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCEEECCCCCCCCCHHHCCCCCCCEEECCCCC
T ss_conf 9845366898898989899899974670899999898979958998000039999996397895
|
| >d1vz6a_ d.154.1.2 (A:) Glutamate N-acetyltransferase 2 (ornithine acetyltransferase) {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DmpA/ArgJ-like superfamily: DmpA/ArgJ-like family: ArgJ-like domain: Glutamate N-acetyltransferase 2 (ornithine acetyltransferase) species: Streptomyces clavuligerus [TaxId: 1901]
Probab=100.00 E-value=0 Score=28870.34 Aligned_cols=1 Identities=0% Similarity=0.039 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 sPkGf~~~~~~aGiK~~~r~DL~li~~~~~~~~AgvFT~N~~~AApV~~~r~~l~~~~~ravvvNSGnANA~TG~~G~~~ 80 (383)
T d1vz6a_ 1 TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVADGQARGVVVLARNANVATGLEGEEN 80 (383)
T ss_dssp CCTTEEEEEECCCSSTTCCCCEEEEEESSCCEEEEEECCCTTCCHHHHHHHHHTTTSBCCEEEEEEEECCCSCHHHHHHH
T ss_pred CCCCEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCEECCCHHHHHHHCCCCCEEEEEECCCHHHHCCHHHHHH
T ss_conf 99859999999536679998689999579976999973687530151998987526884299995374111115888999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 a~~~~~~~A~~l~i~~~~Vl~aSTGVIG~~Lp~~kI~~~i~~l~~~l~~~~~~~AA~AImTTDt~pK~~~i~~~~~~i~G 160 (383)
T d1vz6a_ 81 AREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVSVGGATLVG 160 (383)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEEEESSCCCCHHHHHHHHTTCCCCSSSBCHHHHHHHTCSSCSSCEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEECCCEEEE
T ss_conf 99999876553045753145512420101464113344332112232343366544453066420258999720424777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 iaKGsGMI~PnMATML~fi~TDa~i~~~~L~~~l~~~v~~sFN~ItVDGDtSTNDtv~~lAnG~~~~~~~~~f~~aL~~v 240 (383)
T d1vz6a_ 161 IAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEVDAGEFEEALHTA 240 (383)
T ss_dssp EEECSSSCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHTGGGBCSSSCCCSSCEEEEEEEEEEEECCHHHHHHHHHHH
T ss_pred EEECCHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 86014320555452478999615567688999999864145000654588887758999845875321078777778899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~LA~~Iv~DGEGATK~i~v~V~gA~s~~dA~~iAr~ia~S~LVKtA~~G~DpNWGRI~aAiG~~~~~~~~d~~~i~i~ 320 (383)
T d1vz6a_ 241 ALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIR 320 (383)
T ss_dssp HHHHHHHHHHTCTTCSSEEEEEEEEESSHHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHTCTTCTTCCTTTCEEE
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHEEEE
T ss_conf 99999998636533225899998058999999999999752299998873458847777766423567766662425999
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~v~~~g~~~~~~~~~~~~~~~~~m~~~ei~I~vdL~~G~~~~~~wtcDLt~~YV~INad 383 (383)
T d1vz6a_ 321 FGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE 383 (383)
T ss_dssp ETTEEEECC-------CHHHHHHHHHHTTSSEEEEEEECCSSSEEEEEEEECCCHHHHHHHHC
T ss_pred ECCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCCCHHCCCCC
T ss_conf 899999963667887733559999987457848999997888922899907698322102689
|
| >d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylosinus trichosporium [TaxId: 426]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Ferritin-like superfamily: Ferritin-like family: Ribonucleotide reductase-like domain: Methane monooxygenase hydrolase beta subunit species: Methylosinus trichosporium [TaxId: 426]
Probab=100.00 E-value=0 Score=28869.33 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~p~~~~~~~r~~~~f~~p~~rr~seYE~vt~~~Qp~p~~~~~~~~~~~W~~~f~~G~~~y~~~~ 80 (383)
T d1mhyb_ 1 KRGLTDPERAAIIAAAVPDHALDTQRKYHYFIQPRWKPLSEYEQLSCYAQPNPDWIAGGLDWGDWTQKFHGGRPSWGNES 80 (383)
T ss_dssp CCTTTCHHHHHHHHHHSCSSCSCCCCSTTTTSCCSSSSCCHHHHHHTTCSCCBTTSTTCCBCSCCSSCCTTCCCSSCGGG
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHCCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 99999745888998616788666677656657868789554444202677985651355654783042079999987553
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 Tai~~~DW~afrDP~q~~yr~Yv~~qaeqe~~v~~~~d~~~~~~~~~~l~p~w~~~~L~~~l~p~r~~E~ga~m~~a~i~ 160 (383)
T d1mhyb_ 81 TELRTTDWYRHRDPARRWHHPYVKDKSEEARYTQRFLAAYSSEGSIRTIDPYWRDEILNKYFGALLYSEYGLFNAHSSVG 160 (383)
T ss_dssp CSCCCSCTTCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGSCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 00143663654580088899999989999999999999999669620089999999999986131089999998889998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 r~a~~~~i~n~~~fqa~DeLR~aQ~l~~~~~~L~~~~~gf~~~~~~~k~~W~~dp~WQ~~R~~vE~~lva~~Dw~E~~vA 240 (383)
T d1mhyb_ 161 RDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDASTDVPKKIWTTDPIYSGARATVQEIWQGVQDWNEILWA 240 (383)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCSHHHHHHHHHCGGGHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 64675899999999988788899999999999877468987056899889844886899999999887317659999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~NlV~e~ll~~L~~~~f~~~~Aa~nGD~~t~~l~~s~q~D~~R~~~w~~alvk~~l~~d~e~~~~Nr~~lq~Wi~~W~~~ 320 (383)
T d1mhyb_ 241 GHAVYDATFGQFARREFFQRLATVYGDTLTPFFTAQSQTYFQTTRGAIDDLFVYCLANDSEFGAHNRTFLNAWTEHYLAS 320 (383)
T ss_dssp HHHTHHHHHHHHHHTTTHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98879986589999999999999759705699999999899999999999999998469522155899999999999999
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 a~~A~~~l~pi~~~~p~~~~~~~~~~~~~a~~rv~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 383 (383)
T d1mhyb_ 321 SVAALKDFVGLYAKVEKVAGATDSAGVSEALQRVFGDWKIDYADKIGFRVDVDQKVDAVLAGY 383 (383)
T ss_dssp HHHHHHHHGGGGGGSCCCTTTTSHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf 999999867876047754431105789999999999885433154176546999999986469
|
| >d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Ammonium transporter superfamily: Ammonium transporter family: Ammonium transporter domain: Ammonium transporter AmtB species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28869.01 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~d~~d~~~~l~~~~lV~~m~~~Gf~lle~G~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~lafg~~~~~~g~~~~~~ 80 (383)
T d1u7ga_ 1 AVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEGNNFFGNINWLM 80 (383)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSCSSSCCCSTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHH
T ss_conf 97576459999999999999999999998611144889999999999999999886034867868489988677750542
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~~~~~~vy~~~~hwvw~~g~l~~lG~~Dfa 160 (383)
T d1u7ga_ 81 LKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFA 160 (383)
T ss_dssp GTTCCTTCEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHSSCHHHHHTCCCSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCHHHHEECCCCCCCCCCCEECC
T ss_conf 15765321222211567757633133310231103334665026753045676502156587420488753357863016
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 Gs~vVH~~gG~~aL~~~~~lgpR~~~~~~~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~~~ 240 (383)
T d1u7ga_ 161 GGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAI 240 (383)
T ss_dssp CTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 74366404209899888753875445656565678146667899999999873445435520588999998776788999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~G 320 (383)
T d1u7ga_ 241 LGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCG 320 (383)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHH
T ss_conf 99999998735987799999886545540246755346156899886210778899999986601366465670321368
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 i~G~l~~glfa~~~~~g~~~~~~~~~~~ql~~Ql~g~~v~~~~~~~~~~ii~~il~~~~gLRV 383 (383)
T d1u7ga_ 321 IVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383 (383)
T ss_dssp HHHHHHHHHHTSGGGTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999988998267444665654541268999999999999999999999999999984728769
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28868.36 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g 80 (383)
T d1bs0a_ 1 SWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSG 80 (383)
T ss_dssp CHHHHHHHHHHHCCGGGCCCCCCCCSBCSSSEEEETTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTC
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 95799999999999819971112457888876998996899987653026678989999999999983898876553467
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~hnd~~~le~~ 160 (383)
T d1bs0a_ 81 YSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARL 160 (383)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCCCEEECCHHHHHHHHH
T ss_conf 40689999999987519983588604422467778760699866885045528776342357875257340578899998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~ 240 (383)
T d1bs0a_ 161 LASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVS 240 (383)
T ss_dssp HHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSC
T ss_pred HCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 41457774499965787877723315679999886491998303123210377664558771774211245212233465
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~s~Ii 320 (383)
T d1bs0a_ 241 GAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAIQ 320 (383)
T ss_dssp CEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECSCCSSBC
T ss_pred CCCCCCCHHHHHHHHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 54200321677899860446664244320689999999999985025788888888899998788755986579998879
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~v~~g~~~~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~g 383 (383)
T d1bs0a_ 321 PLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG 383 (383)
T ss_dssp CEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHHC
T ss_pred EEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 999799999999999999789149897489789998459998677799999999999998649
|
| >d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SAICAR synthase-like superfamily: SAICAR synthase-like family: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta domain: Phosphatidylinositol phosphate kinase IIbeta, PIPK IIbeta species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28865.48 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~r~~~~l~~~~~~Gi~~sv~~l~~~~~~~~L~~~dF~~~~k~~~~~~~~~~~~~~~~fkfk~Y~P~vF~~lR~~fgi~ 80 (383)
T d1bo1a_ 1 KLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGID 80 (383)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHTTSCCCSSCCGGGGTCEEEEEEECBSSSCSSSCSEEEEEEECHHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECHHHHHHHHHHCCCC
T ss_conf 94410238999999737988875228996000371003445897347777886779887079983799999999981989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~dy~~Sl~~~~~~~~~s~GkSGs~F~~t~D~rfiiKti~~~E~~~l~~~l~~Y~~h~~~~n~~TLL~k~~Gly~i~~~~ 160 (383)
T d1bo1a_ 81 DQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDG 160 (383)
T ss_dssp HHHHHHHHHSSCCEECCCC----CCEEECTTSSEEEECCCHHHHHHHHHHHHHHHHHHHTTTTCCSSCCEEEEEEEEETT
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEEEECC
T ss_conf 89999972788654345657767867880699689998579999999999899999998607875787634303787479
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~lKD~df~~~~~~i~l~~~~k~~l~~ql~~D~~fL~~ 240 (383)
T d1bo1a_ 161 VETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQ 240 (383)
T ss_dssp EEEEEEEEECSSCSSSCCSEEEEECCCSSSSCSCSGGGSSSCCEECHHHHHHTTCCCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 52799998424567765103676158632567675334555204656778764688230799999999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~imDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (383)
T d1bo1a_ 241 LKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNLLSFPRFFGPGEFDPSVDVYAMKS 320 (383)
T ss_dssp HTCCSCCEEEEEEEHHHHHHHHHHHHHHTTTTC-----------------------------------CCSCCTTTSTTE
T ss_pred CCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78675043675512211112211001124555444555564322345789788302221553346644577765445445
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~vyyiGIIDiLq~Y~~~KklE~~~Ksl~~~~g~~IS~v~P~~Ya~RF~~Fi~~I~~ 383 (383)
T d1bo1a_ 321 HESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHGAGAEISTVNPEQYSKRFNEFMSNILT 383 (383)
T ss_dssp EECSSTTEEEEEEECCSCC------------------CCCSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 678997599999999715779689999999999211889896127989999999999998649
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28864.91 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~ 80 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEV 80 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEECCCS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCEEECCCEEECCCCHHHHHHHHHCCCCCEECCCC
T ss_conf 98998978899999999986899789993499874506688778982895776696798769999999859962222676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (383)
T d2v5za1 81 ERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLA 160 (383)
T ss_dssp SEEEEEETTEEEEECSSSCCCCSHHHHHHHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 63477347643223444200011444554899999999866430011321013455544667999998704626778888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~i~~~~~v~~I~~~~~~v 240 (383)
T d2v5za1 161 TLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENV 240 (383)
T ss_dssp HHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHHHGGGEEESCCEEEEECSSSSE
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCEEEECCCCEEEEECCCEE
T ss_conf 87654220246302467889999886132212333246762133144154999999987598499368606899609969
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~ 320 (383)
T d2v5za1 241 LVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYME 320 (383)
T ss_dssp EEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSSTTSHH
T ss_pred EEEECCCCEEECCEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCHH
T ss_conf 99988997898799998989899951824899999999999975447754401354408768668556653466775067
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ga~~~g~~~a~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~P~~p~~~~~i~~~~ 383 (383)
T d2v5za1 321 GAVEAGERAAREILHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVPGLLRLIGLTT 383 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCGGGSSCCCCCCSSSCCCCCCCCHHHHHCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
T ss_conf 899987999999999862588044302484224655454545605224999987403167779
|
| >d1imva_ e.1.1.1 (A:) Pigment epithelium-derived factor, PEDF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Pigment epithelium-derived factor, PEDF species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28864.93 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~L~~~l~~~~~~~Niv~SP~si~~~L~~l~~Ga~g~T~~el~~~L~~~~~~~ 80 (383)
T d1imva_ 1 TGALVEEEDPFFKVPVNKLAAAVSNFGYDLYRVRSSMSPTTNVLLSPLSVATALSALSLGADERTESIIHRALYYDLISS 80 (383)
T ss_dssp CCCCCCCCSHHHHSHHHHHHHHHHHHHHHHHHHHHHHCTTSCEEECHHHHHHHHHHHGGGCCHHHHHHHHHHTTGGGCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCH
T ss_conf 99866554754458289999999999999999985129698199888999999999998647399999999738999984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~l~~~~~~~~~~l~~~n~i~v~~~~~~~~~f~~~~~~~y~~~~~~~~~~~~~~~~~IN~wv~~~T~g~I~~~ 160 (383)
T d1imva_ 81 PDIHGTYKELLDTVTAPQKNLKSASRIVFEKKLRIKSSFVAPLEKSYGTRPRVLTGNPRLDLQEINNWVQAQMKGKLARS 160 (383)
T ss_dssp SCHHHHHHHHHHHHTSTTSCEEEEEEEEECTTCCCCHHHHHHHHHHHCCCCEECCSCHHHHHHHHHHHHHHHTTTCSCCC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 89999999998750067763677877886168741668888887623764664354479999999999985075620364
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~t~~~lvna~~fk~~W~~~F~~~~t~~~~F~~~~~~~~~V~mM~~~~~~~~~~~~~~~~~~vv~lp~~~~~sm~ 240 (383)
T d1imva_ 161 TKEIPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEERTVRVPMMSDPKAVLRYGLDSDLSCKIAQLPLTGSMSII 240 (383)
T ss_dssp CSCCCSSCSEEEEEEEEEECCEEECCCGGGCEEEEEESSSSCEEEEEEEEEEEEEEEEEEETTTTEEEEEEEETTTEEEE
T ss_pred CCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCEEEE
T ss_conf 33438665124311104423202556533454464234798479830211245514566516655389994137973899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 iiLP~~~~~~l~~l~~~l~~~~l~~~~~~~~~~~v~v~lPkF~i~~~~dL~~~L~~lGl~~~F~~adfs~is~~~l~vs~ 320 (383)
T d1imva_ 241 FFLPLKVTQNLTLIEESLTSEFIHDIDRELKTVQAVLTVPKLKLSYEGEVTKSLQEMKLQSLFDSPDFSKITGKPIKLTQ 320 (383)
T ss_dssp EEEESSCCSCCHHHHTTCCHHHHHHHHHHCEEEEEEEEEECEEEEEEEECHHHHHTTTTTHHHHSCCCTTTCSSCCCEEE
T ss_pred EEEECCCCCCHHHHHHHCCHHHHHHHHHHCCCEEEEEEECEEEEEEECCHHHHHHHCCHHHHCCCCCCCCCCCCCCEEEE
T ss_conf 99962667886787664068899998750642279995021887540246675431343330345674556799947445
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 v~hka~ieVdE~G~~a~a~t~~~~~~~~~~~~f~~drPF~f~I~~~~t~~iLF~G~v~~P~~~ 383 (383)
T d1imva_ 321 VEHRAGFEWNEDGAGTTPSPGLQPAHLTFPLDYHLNQPFIFVLRDTDTGALLFIGKILDPRGP 383 (383)
T ss_dssp EEEEEEEEECSCEEECC--------CCCCCCEEECCSCEEEEEEETTTCCEEEEEEESCTTCC
T ss_pred EEEEEEEEECCCCCCCCCCCCEECCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 789999999888611132222101567899679911999999999999968999995289997
|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28862.40 Aligned_cols=1 Identities=0% Similarity=-0.261 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~P~GL~N~GNtCY~NSvLQ~L~~ip~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~p~~~~~~l~ 80 (383)
T d2ayna1 1 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH 80 (383)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 98995858898406999999999766999999985145315777645277999999999999865898457799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~QqDa~Ef~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~~~c~~c 160 (383)
T d2ayna1 81 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTES 160 (383)
T ss_dssp HHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSS
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEEEEEEEEEEEEEEEECCC
T ss_conf 97376502555672245439999998788999998753203644211101211124667872054022899988883578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~l~L~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~ 240 (383)
T d2ayna1 161 EEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVN 240 (383)
T ss_dssp CCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTEECCCCEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSC
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEECCCEEECCCCCCE
T ss_conf 96551002231323210221010013456665201100124532376401202346502341453410220120567621
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~K~~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L 320 (383)
T d2ayna1 241 AKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDL 320 (383)
T ss_dssp CBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEEEE
T ss_pred EECCCEECCCCEEECHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 33584774687664432146033013321024554432211013667554434542222236533344446789951999
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~avi~H~G~s~~~GHY~a~vk~~~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~aYiLfY~r~ 383 (383)
T d2ayna1 321 QAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPR 383 (383)
T ss_dssp EEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC
T ss_pred EEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCEEEECHHHHHHHHCCCCCCCEEEEEEEEC
T ss_conf 999999789999977089999999928999899508937999977527998893699999879
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=0 Score=28860.28 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (383)
T d1gy8a_ 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (383)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC
T ss_conf 96979995787689999999999828998999826876555300133566677776541133332235541799784568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 160 (383)
T d1gy8a_ 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA 160 (383)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred HHHHHHHHHCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78866666224012043232443222223222233134554442232001110477533333332222334433222222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~ 240 (383)
T d1gy8a_ 161 EPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQ 240 (383)
T ss_dssp CCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 22123357899988886676799999999998599779971230515676666555666510027999999986103454
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el~~~ 320 (383)
T d1gy8a_ 241 RLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEV 320 (383)
T ss_dssp ----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHHHH
T ss_pred CCHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEHHHHHHH
T ss_conf 20123333037835873785546899747856888999999999986402221111346753899689996359999999
Q ss_pred --------------------------------------------------------------C
Q ss_conf --------------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 i~~~~~~~~~~~~~~~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~~~~~~ 383 (383)
T d1gy8a_ 321 ARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPNGYA 383 (383)
T ss_dssp HHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTTTTC
T ss_pred HHHHHCCCCCEEECCCCCCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999869997648899999986785357899999879966787999999999999986800489
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28788.04 Aligned_cols=1 Identities=0% Similarity=-1.224 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~ 80 (382)
T d1u08a_ 1 PLIPQSKLPQLGTTIFTQMSALAQQHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLY 80 (382)
T ss_dssp CCCCCCSCCCCCCCHHHHHHHHHHHTTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98824547799986999999996269978854988999778999999999985599889898677999999999999984
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 160 (382)
T d1u08a_ 81 GYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERT 160 (382)
T ss_dssp SCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTE
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 99988772378646358889998751035640599731443213455443133200012214335689999731213574
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~R 240 (382)
T d1u08a_ 161 RLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWK 240 (382)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGC
T ss_pred CEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 08998798765454565332012332210243202430320210343345542000123468579985035521478665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 iG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~gg~~~~~ 320 (382)
T d1u08a_ 241 VGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLV 320 (382)
T ss_dssp CEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEE
T ss_pred CHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEE
T ss_conf 11010210137888752022323456433322333222206777789999876300002232037857956894679989
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~l 382 (382)
T d1u08a_ 321 DYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL 382 (382)
T ss_dssp ECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTTC
T ss_pred ECCCCCCCCHHHHHHHHHHHCCEEEECCHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHCC
T ss_conf 56888999999999999997999998224527899989889999809999999999998179
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=28789.02 Aligned_cols=1 Identities=100% Similarity=0.703 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~l~~PGP~~v~~~V~~Am~~~~~~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~ 80 (382)
T d2bkwa1 1 KSVDTLLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS 80 (382)
T ss_dssp CCCCEECSSSSCCCCHHHHHTTSCCCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 98656427899788799999727326897769999999999999999985334898719999386899999999998876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~ 160 (382)
T d2bkwa1 81 KAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQA 160 (382)
T ss_dssp TCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHH
T ss_pred CCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHEEEEECCCCCCCCCCCHHHHHH
T ss_conf 07998248997312334434311100133333223677775641579998630110100232112246302441233332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (382)
T d2bkwa1 161 IKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWT 240 (382)
T ss_dssp HHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 01334310256302455322123233557569950566667689750255405999864331035888663011122100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~ 320 (382)
T d2bkwa1 241 PIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVY 320 (382)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEE
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCEEEEC
T ss_conf 23311345556535677577789999999999876324557999999999999764115532234683011587379970
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~~~ 382 (382)
T d2bkwa1 321 VADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRK 382 (382)
T ss_dssp CSCHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHHCCEEEECCCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89989999999978939977877311699899858868997999999999999999997739
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=28786.95 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~~r~~~~~~s~~~~i~~~a~~~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~ 80 (382)
T d1b5pa_ 1 MRGLSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEK 80 (382)
T ss_dssp CCCCCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 93788999848988899999999999967998289999989999889999999999865886899987889999999764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 160 (382)
T d1b5pa_ 81 FRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRA 160 (382)
T ss_dssp HHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTT
T ss_pred HHHHCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 44303411265534056778999999999967997989987998477999999845847998554101458999999973
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G 240 (382)
T d1b5pa_ 161 ITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTG 240 (382)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGG
T ss_pred CCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHHHHCCEEEEEECCCCCEECCCCCCCHHHCCCCCEEEEECCHHHCCCCH
T ss_conf 78897699989997976600799999999999998590899976641232178988887818997799946346451807
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 lR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~gg 320 (382)
T d1b5pa_ 241 WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGA 320 (382)
T ss_dssp GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSBT
T ss_pred HHEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCE
T ss_conf 56699998999999999998750357653222222222233121157899999999862267898876449767568941
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 321 FYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVL 382 (382)
T ss_dssp TEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred EEEEEECCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 79968578999999999999997897999572258999699997499999999999999869
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=0 Score=28784.65 Aligned_cols=1 Identities=0% Similarity=0.570 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (382)
T d1wkva1 1 ALADISGYLDVLDSVRGFSYLENAREVLRSGEARCLGNPRSEPEYVKALYVIGASRIPVGDGCSHTLEELGVFDISVPGE 80 (382)
T ss_dssp CEEEGGGGTTHHHHCCSSTTHHHHHHHHHHTEEECBSSGGGCHHHHHHHHHHTCSEEEBSSSCEEETTTTTTTCCCSCTT
T ss_pred CCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCEECCCCCC
T ss_conf 96421015677775324278999999986035030579975478999999844553556776531166526210489854
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~l~~~~~~~PTPLvrl~l~~~~G~~IylKlE~~NPtGgSfKdR~A~~~i~~A~~~~~~g~~VVeaSSGN~GiAlA 160 (382)
T d1wkva1 81 MVFPSPLDFFERGKPTPLVRSRLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGSLVADATSSNFGVALS 160 (382)
T ss_dssp CEESSHHHHHHHSCSCCEEECCCCCSTTEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTTTSCTTCEEEEECCHHHHHHHH
T ss_pred EEECCHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH
T ss_conf 67579899856899998777877888898999985478999876299999999999985268999999858759999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~~~~~~~~~~~~~a~~~a~~~~~~~~~q~~N~~~~~~h~~ttg~E 240 (382)
T d1wkva1 161 AVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNEGFVHVNQFYNDANFEAHMRGTARE 240 (382)
T ss_dssp HHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHHHHHCCEECCTTTCHHHHHHHHHTHHHH
T ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHCCHHH
T ss_conf 99998499779996200112222222356861154375105679999876520245754332345430232112112178
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 I~eQl~~~~~~~d~vv~~vGtGG~~~Gi~~~lk~~~p~vkiigVep~~~~~i~g~~~i~~g~~~~~~~d~~~~i~~Vsd~ 320 (382)
T d1wkva1 241 IFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLWINMLDISYTLAEVTLE 320 (382)
T ss_dssp HHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCTTCCCGGGCCSHHHHSCCCCEEEEECHH
T ss_pred HHHHHHCCCCCEEEEEEECCCCCCCCCCEEEHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHH
T ss_conf 99996467873167897416654233320101231876623675244444445641024576575646644299997999
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 Eai~a~r~La~~EGI~vgpSSGaavaaa~k~a~~~~~~~~~vVvIlcD~G~rYlstiyN~~~ 382 (382)
T d1wkva1 321 EAMEAVVEVARSDGLVIGPSGGAAVKALAKKAAEGDLEPGDYVVVVPDTGFKYLSLVQNALE 382 (382)
T ss_dssp HHHHHHHHHHHHHSCCBCHHHHHHHHHHHHHHHTTCSCSEEEEEEECBBGGGCHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCC
T ss_conf 99999999999819888189999999999998640689998999988897432676426789
|
| >d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: Choline/Carnitine O-acyltransferase domain: Choline O-acetyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=0 Score=28788.39 Aligned_cols=1 Identities=0% Similarity=-0.958 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 e~~LP~LPvP~L~~Tl~ryL~s~~Pl~s~ee~~~t~~~v~~F~~~~g~G~~Lq~~L~~~~~~~~nwl~~~W~~~~YL~~R 80 (382)
T d1t1ua1 1 ELDLPKLPVPPLQQTLATYLQCMQHLVPEEQFRKSQAIVKRFGAPGGLGETLQEKLLERQEKTANWVSEYWLNDMYLNNR 80 (382)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHHHSSSTTHHHHHHHHTTTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC
T ss_conf 99998899999999999999985445999999999999999751698179999999987446878607778765016788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~pL~~~~n~~~~~~~~~~~~~~~q~~rAA~l~~~~l~f~~~l~~~~l~~~~~~~~~~~~plcM~qy~~lF~t~RiP~~~~ 160 (382)
T d1t1ua1 81 LALPVNSSPAVIFARQHFQDTNDQLRFAACLISGVLSYKTLLDSHSLPTDWAKGQLSGQPLCMKQYYRLFSSYRLPGHTQ 160 (382)
T ss_dssp SCHHHHTCCEEEECCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTCSCCTTSSSCCSSSCCCCTTGGGTTTEEEECCSSS
T ss_pred CCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCHHHHHHHCCCEECCCCCC
T ss_conf 78650056612105666876037999999999999999999756656861210224898667899998728670568998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 D~l~~~~~~~~~~~~HIvVl~~g~~y~v~v~~~~~~l~~~ei~~~l~~I~~~~~~~~~~~~~ig~LT~~~Rd~Wa~~r~~ 240 (382)
T d1t1ua1 161 DTLVAQKSSIMPEPEHVIVACCNQFFVLDVVINFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTV 240 (382)
T ss_dssp CEEEECCCSSSSCCCEEEEEETTEEEEEESEETTEECCHHHHHHHHHHHHHHHTCSTTCCCCGGGGGGSCHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCCEEEEEECCEEEEEEEEECCEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 74665576778898779999899899999998990688999999999999624455556888450555871999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 L~~~~~N~~~L~~Ie~alfvv~LDd~~~~~~~e~~~~~~~l~g~~~~~~~~NRW~DKslq~IV~~nG~~g~~~EHS~~DG 320 (382)
T d1t1ua1 241 LLKDSTNRDSLDMIERCICLVCLDGPGTGELSDTHRALQLLHGGGCSLNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDG 320 (382)
T ss_dssp HTTSHHHHHHHHHHHTCSCEEEECCCCSSCCCHHHHHHHHHHTTSTTTTTTSCCTTBSEEEEECTTSCEEEEECSTTCCH
T ss_pred HHCCCCHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCH
T ss_conf 85596158999999866489992799988701689999986178778998610677873799978986898504676249
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~L~f~l~~~~~~~I~~a~~~~~~~~~dl 382 (382)
T d1t1ua1 321 IVLVQCTEHLLKHMMTSNKKLVRADSVSELPAPRRLRWKCSPETQGHLASSAEKLQRIVKNL 382 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTSCSSSCSCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998640677888887778999658788658899999999999999997349
|
| >d1ea9c3 c.1.8.1 (C:122-503) Maltogenic amylase, central domain {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Bacillus sp., cyclomaltodextrinase [TaxId: 1409]
Probab=100.00 E-value=0 Score=28784.02 Aligned_cols=1 Identities=0% Similarity=-2.088 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~p~W~~~~v~Y~i~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~~gi~~kLdylk~LGv~~i~l~Pi~~~~~~~ 80 (382)
T d1ea9c3 1 FQPPAWVKDAIFYQIFPERFANGDTRNDPEGTLPWGSADPTPSCFFGGDLQGVIDHLDHLSKLGVNAVYFTPLFKATTNH 80 (382)
T ss_dssp CCCCTHHHHCCCCEECSTTSCCCCSCSCSSCCSCCCSSSCCCSSCCCCCHHHHHHTHHHHHHHTCSEEEECCCSSCSSSS
T ss_pred CCCCCCCCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf 97986023886999971220379988786676434555777676678189999985699986799889969770178877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 gY~~~~~~~id~~~Gt~~df~~lv~~~h~~gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T d1ea9c3 81 KYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIP 160 (382)
T ss_dssp TTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCTTTHHHHHHHTTTTTCTTTTSSCBCSSSCCCTTSCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87754453544366777899999999986264378763013441348325556406876544430013464432235763
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~d~n~~~~~v~~~l~~~~~~w~~~~gvDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~~~e~~~~~~~ 240 (382)
T d1ea9c3 161 TYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVANEVSHQFWREFRRVVKQANPDAYILGEVWHESSI 240 (382)
T ss_dssp SBCBSSSCTTSBBCCTTSHHHHHHHHHHHHHHHHHHCCSEEEETTCTTSCHHHHHHHHHHHHHHCTTCEEEECCCSCCTT
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 22233344345742301388999999987515653146678743620076566545666554008981588543145532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nHD~~r~~~~~~~~~~~~~~a~~ 320 (382)
T d1ea9c3 241 WLEGDQFDAVMNYPFTNAVLDFFIHQIADAEKFSFMLGKQLAGYPRQASEVMFNLLDSHDTARLLTQADGDKRKMKLAVL 320 (382)
T ss_dssp TTTTTSCSEEBCHHHHHHHHHHTTSCCSCHHHHHHHHHHTTTTSCHHHHHTCEECSCCTTSCCHHHHHCSCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 13676432212343004667655046421567899999999854020654405520367666312246787999999999
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~l~~pG~P~Iy~G~E~g~~~~~~~~~r~~~~w~~~~~~~~l~~~~~~L~~lR~~~paL~~G 382 (382)
T d1ea9c3 321 FQFTYFGTPCIYYGDEVGLDGGHDPGCRKCMEWDETKHDKDLFAFYQTVIRLRQAHAALRTG 382 (382)
T ss_dssp HHTTSSSEECCCSSCSSCCCCCSHHHHTCCCCCCTTSCCHHHHHHHHHHHHHHHHCSHHHHC
T ss_pred HHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCC
T ss_conf 99971798787755754888999977648878877765389999999999999568975189
|
| >d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: Choline/Carnitine O-acyltransferase domain: Peroxisomal carnitine O-octanoyltransferase, COT species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=28788.92 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 e~Tf~~q~~LP~LPvP~Le~Tl~ryL~s~~pl~~~~e~~~t~~~v~~F~~~~G~~Lq~~L~e~a~~~~NWl~~~W~~~~Y 80 (382)
T d1xl7a1 1 ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAY 80 (382)
T ss_dssp CCTTTTGGGCCCCCCCCHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCTTSSHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 96431427799898999899999999986566999999999999999974939999999998740698850587867753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 L~~R~pl~~~~n~~~~~~~~~~~~~~~~~~q~~raA~l~~~~~~f~~~l~~~~l~~~~~~~~plcm~qy~~lF~t~RiPg 160 (382)
T d1xl7a1 81 LDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPG 160 (382)
T ss_dssp TSCCSCHHHHTCEEEECGGGGTTCCCCTTCHHHHHHHHHHHHHHHHHHHHTTCSCCCEETTEECCCGGGGGTSSEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCEEECHHHHHHHCCCEECCC
T ss_conf 25577864555666766556777885500699999999999999998740365471230998760799997612771689
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~D~~~~~~~~~~~~~~~~HIvVl~~g~~ykv~v~~~~~~~s~~el~~~l~~I~~~~~~~~~~~~vg~LTt~~Rd~WA~ 240 (382)
T d1xl7a1 161 ITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAK 240 (382)
T ss_dssp SSCCEEEECCCCTTTCCCCCEEEEEETTEEEEEESEETTEECCHHHHHHHHHHHHHHHHTSCCCCCGGGGGGSCHHHHHH
T ss_pred CCCCCEEECCCCCCCCCCCCEEEEEECCCEEEEEEEECCEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 98772002355556789886699997893089999329908889999999999997354678887755067656479999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~R~~L~~~~~~N~~~L~~Ie~AlfvvcLD~~~~~~~~e~~~~~~~~~l~G~~~NRW~DKs~q~IV~~nG~~G~~~EHS~~ 320 (382)
T d1xl7a1 241 AREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPY 320 (382)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHSSCEEEECCCCCCCCSSCCHHHHHHHHSSCGGGCCTTBSCEEEECTTSCEEEEECSSSC
T ss_pred HHHHHHHCCHHHHHHHHHHHHCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCH
T ss_conf 99997617842699999987446888613568889858999999963859873327766713899689888987368716
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 DG~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~p~~L~f~l~~~i~~~I~~A~~~~~k~as 382 (382)
T d1xl7a1 321 DAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAAS 382 (382)
T ss_dssp CTHHHHHHHHHHHHHHHHTTTCCCSCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 69999999999999976127878888887789997577896698999999999999998509
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=100.00 E-value=0 Score=28786.71 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~P~w~~~~viY~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kLdyl~~lGi~~I~l~Pv~~~~~ 80 (382)
T d1wzla3 1 VFTTPEWAKEAVIYQIFPERFANGDPSNDPPGTEQWAKDARPRHDSFYGGDLKGVIDRLPYLEELGVTALYFTPIFASPS 80 (382)
T ss_dssp SCCCCSGGGGCCEEEECGGGTCCCCGGGCCTTCCCCCTTCCCCTTCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSS
T ss_pred CCCCCCCCCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 97998420288799997024137998778766643344566655777785899999831999977997899798677875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~gY~~~~~~~vd~~~Gt~~d~~~lv~~~H~~Gi~vilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T d1wzla3 81 HHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTSR 160 (382)
T ss_dssp SSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTTSHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 45776556320236788788999999999752451576321013333333331001037654246643003654566789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~dLn~~n~~v~~~~~~~~~~w~~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~~i~e~~~~~~ 240 (382)
T d1wzla3 161 TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFWMEQGIDGWRLDVANEVDHAFWREFRRLVKSLNPDALIVGEIWHDAS 240 (382)
T ss_dssp CSBCBSSSSCTTCBBBCTTSHHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCSSCCG
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 74444344556678507799999999999999999758875034334335645556789998752884478620035652
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~ 320 (382)
T d1wzla3 241 GWLMGDQFDSVMNYLFRESVIRFFATGEIHAERFDAELTRARMLYPEQAAQGLWNLLDSHDTERFLTSCGGNEAKFRLAV 320 (382)
T ss_dssp GGCSSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHTTSCHHHHTTCEEESCCTTSCCHHHHTTTCHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHCCCCHHHHHHHH
T ss_conf 02203342023302677899986514764314678888753201643245663123058775536765389799999999
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~llt~pG~P~iy~G~E~g~~g~~~~~~r~~~~W~~~~~~~~l~~~~~~L~~lR~~~paL~r 382 (382)
T d1wzla3 321 LFQMTYLGTPLIYYGDEIGMAGATDPDCLRPMIWEEKEQNRGLFEFYKELIRLRHRLASLTR 382 (382)
T ss_dssp HHHHHSSSEEEEETTGGGTCCCCSTTGGGCCCCCCGGGSCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCC
T ss_conf 99998089878973730277899995445788988655570899999999999830986488
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=28787.20 Aligned_cols=1 Identities=0% Similarity=0.936 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~P~w~~~~viY~v~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~gi~~kldyl~~LGv~~i~L~Pi~~~~~ 80 (382)
T d1j0ha3 1 DLFEAPDWVKDTVWYQIFPERFANGNPSISPEGSRPWGSEDPTPTSFFGGDLQGIIDHLDYLVDLGITGIYLTPIFRSPS 80 (382)
T ss_dssp GSCCCCGGGGGCCEEEECGGGTCCSCGGGSCTTCCCTTSSCCCSSCCCCCCHHHHHHTHHHHHHHTCCEEEECCCEECSS
T ss_pred CCCCCCCCHHCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 98899964107779999755312799887766665345557766766785899999867999976998899698876876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~gy~~~d~~~vd~~~Gt~~~~~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T d1j0ha3 81 NHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPR 160 (382)
T ss_dssp SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCHHHHHHHHHGGGCTTGGGBCBSSSSCCCSSS
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56877565643278879979999999986423643787752102333344312220368745557742224566545663
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~dln~~n~~vr~~l~~~~~~wi~~~giDGfR~Da~~~~~~~~~~~~~~~~~~~~p~~~~i~e~~~~~~ 240 (382)
T d1j0ha3 161 PNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEIDHEFWREFRQEVKALKPDVYILGEIWHDAM 240 (382)
T ss_dssp CSBCBSTTCTTSBBBCTTSHHHHHHHHHHHHHHHHHHCCCEEEETTGGGSCHHHHHHHHHHHHHHCTTCEEEECCSSCCG
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 23332356777764440769999999998886766441157984453216645534444433202898522343234512
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~R~~~~~~~~~~~~~~a~ 320 (382)
T d1j0ha3 241 PWLRGDQFDAVMNYPFTDGVLRFFAKEEISARQFANQMMHVLHSYPNNVNEAAFNLLGSHDTSRILTVCGGDIRKVKLLF 320 (382)
T ss_dssp GGCSSSSCSEEBCHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTSCHHHHHTCBCBSCCTTSCCHHHHTTTCHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 34213554410155310456654303543201221022210113654467662320467777741213488599999999
Q ss_pred -------------------------------------------------------------C
Q ss_conf -------------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~lllt~pG~P~iy~G~E~G~~~~~~~~~r~~~~W~~~~~~~~l~~~~k~L~~lR~~~paL~r 382 (382)
T d1j0ha3 321 LFQLTFTGSPCIYYGDEIGMTGGNDPECRKCMVWDPMQQNKELHQHVKQLIALRKQYRSLRR 382 (382)
T ss_dssp HHHHHSSSCCEEETTGGGTCCCCSTTGGGCCCCCCTTTSCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHCCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCC
T ss_conf 99998179888986863286899880103577888654576999999999999842997586
|
| >d1by7a_ e.1.1.1 (A:) Plasminogen activator inhibitor-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Plasminogen activator inhibitor-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28713.08 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~l~~~~~~Fa~~L~~~l~~~~~~~N~v~SP~si~~~L~~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~l~~~l 80 (381)
T d1by7a_ 1 EDLCVANTLFALNLFKHLAKASPTQNLFLSPWSISSTMAMVYMGSRGSTEDQMAKVLQFNEVGAAADKIHSSFRSLSSAI 80 (381)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSSSSCEEECHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTCCG-GGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 90778999999999999873098985998789999999999986664999999997089987888999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~df~~~~~~a~~~IN~wv~~~T~g~I~~~~~~~~l~~~t 160 (381)
T d1by7a_ 81 NASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDFLECAEEARKKINSWVKTQTKGKIPNLLPEGSVDGDT 160 (381)
T ss_dssp C------CEEEEEEEEEETTSCBCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHTTTSCTTSSCTTSCCTTC
T ss_pred HCCCCCCEEEECCCHHCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 56798847866000000368732889999999861773020443212599999999999975247754567855679731
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~lvna~~fk~~W~~~F~~~~t~~~~F~~~~~~~~~V~mm~~~~~~~~~~~~~~~~~~v~lp~~~~~~m~iilp~~~~~ 240 (381)
T d1by7a_ 161 RMVLVNAVYFKGKWKTPFEKKLNGLYPFRVNSAQRTPVQMMYLREKLNIGYIEDLKAQILELPYAGDVSMFLLLPDEIAD 240 (381)
T ss_dssp CEEEEEEEEECCCBSSCCEECC---EEEEEETTEEEEECEEEEEEEEEEEEETTTTEEEEEEEETTTEEEEEEEESSCCS
T ss_pred HHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 75611244774211578752356555333689805899516651555543136767499996147970799996277665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~v~lPkF~i~~~~dl~~~L~~lGi~~~F~~~~Adfs~is~~~~l~vs~i 320 (381)
T d1by7a_ 241 VSTGLELLESEITYDKLNKWTSKDKMAEDEVEVYIPQFKLEEHYELRSILRSMGMEDAFNKGRANFSGMSERNDLFLSEV 320 (381)
T ss_dssp SSSSCHHHHHHCCHHHHHHHTSTTTEEEEEEEEEEECEEEEEEEECHHHHHHTTCCGGGCTTTCCCTTTBSCSCCCCCEE
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEEEE
T ss_conf 35666776642258899987512114340489965648997550569999856851120445454445678898157667
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~q~~~ieVdE~Gt~aaa~t~~~~~~~~~~~~~~f~~nrPF~f~I~d~~t~~iLF~G~v~~P 381 (381)
T d1by7a_ 321 FHQAMVDVNEEGTEAAAGTGGVMTGRTGHGGPQFVADHPFLFLIMHKITNCILFFGRFSSP 381 (381)
T ss_dssp EEEEEEEECSCBC-----------------CCEEECCSCEEEEEEETTTTEEEEEEEECCC
T ss_pred EEEEEEEECCCCCCCCCCCCEEEECCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCC
T ss_conf 8889999878842023133200003568999879933998999999999978999994398
|
| >d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycoside hydrolase/deacetylase family: alpha-mannosidase domain: Golgi alpha-mannosidase II species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=0 Score=28712.45 Aligned_cols=1 Identities=0% Similarity=-0.625 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~q~~~~~~~~~~~~~~~kl~VhlV~HsH~D~gWl~t~~e~~~~~~~~i 80 (381)
T d3bvua3 1 CQDVVQDVPNVDVQMLELYDRMSFKDIDGGVWKQGWNIKYDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTKHI 80 (381)
T ss_dssp CCCSSSCCCCCSEEHHHHHHHCCCCCCCCSSSTTSCCCCCCGGGCBTTBCEEEEEEEEEECCSSSSSCHHHHHHHTHHHH
T ss_pred CCHHHHHCCCCCEEHHHHHHHCCCCCCCCCCCCCCCCEEECHHHCCCCCCCEEEEECCCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 94366405766622687886521538999716677512205421476788379993877888002375999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 l~~~l~~l~~~p~~~F~~~~~~~~~~w~~~~~pe~~~~vk~lV~~GrlEivgg~wv~~De~~~~~es~Irql~~G~~~l~ 160 (381)
T d3bvua3 81 LSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLK 160 (381)
T ss_dssp HHHHHHHHHHCTTCCEEECCHHHHHHHHTTSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999879997799835389999999749999999999998798799687121463457997999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~fG~~p~~~w~~D~FGhs~~lp~il~~~Gi~~~~~~R~~~~~~~~~~~~k~lef~w~~~W~~~~~s~ilth~~~~~~Y~ 240 (381)
T d3bvua3 161 QFMNVTPTASWAIAPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYD 240 (381)
T ss_dssp HHHCCCCCEEEECSSSSBCTHHHHHHHTTTCCEEEECCCCHHHHHHHHHTTCSEEEECCTTCSSCTTCEEEEECCSSCSS
T ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHHHCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCCCCC
T ss_conf 97599973589638887657789999856988699974135542005201466504304666899880457516555668
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~p~~~~~d~~~~~~f~f~~~~~~~~~~p~~~~~~~i~~~nv~~r~~~~~~~~~~~a~~~~tn~vL~p~G~Df~y~~a~~w 320 (381)
T d3bvua3 241 IPHTCGPDPKVCCQFDFKRMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEW 320 (381)
T ss_dssp GGGTSSSCHHHHGGGCGGGSSTTSCCCTTSCCCCCCCTTTHHHHHHHHHHHHHHHHTTSSSSEEEEEEEEETCSCSHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHH
T ss_conf 85567887211345442123455777876668766625589999999999999986216887389816668787761037
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~n~~kli~~iN~~~~~~v~i~~ST~~~Yf~al~~~~~~~~~~~P~~~gDFfpYad~~ 381 (381)
T d3bvua3 321 DVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRS 381 (381)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCEEEEECCHHHHHHHHHHHHHTTSCCCCEEESCBCSCBSST
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 7888769999999971888881899889999999999987524778877678876788899
|
| >d1odza_ c.1.8.3 (A:) Mannanase A, ManA {Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Mannanase A, ManA species: Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]
Probab=100.00 E-value=0 Score=28708.83 Aligned_cols=1 Identities=0% Similarity=-1.655 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~p~~~~lvd~~At~~tk~L~~~L~~~~g~~il~Gqq~~~~~g~~~~~~~~~~sdv~~~tG~yPAv~G~D~~~~~~~~~~ 80 (381)
T d1odza_ 1 VKPVTVKLVDSQATMETRSLFAFMQEQRRHSIMFGHQHETTQGLTITRTDGTQSDTFNAVGDFAAVYGWDTLSIVAPKAE 80 (381)
T ss_dssp CCCEECCCSSTTCCHHHHHHHHHHHHHTTTCEEEEEETTTTCCSSCSCCSSSCCHHHHHHSSCCSEEEEEGGGTSTTCTT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHCCCCCCCCH
T ss_conf 98877620597779999999999998648966983355444564436665306667640377744201200135687321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~GgIvt~~WH~~~P~~~~~~~~~~~~~~~d~~~~v~~~lpg~~~~~~~~~~ld~ia~~~~~L~~~~~~ 160 (381)
T d1odza_ 81 GDIVAQVKKAYARGGIITVSSHFDNPKTDTQKGVWPVGTSWDQTPAVVDSLPGGAYNPVLNGYLDQVAEWANNLKDEQGR 160 (381)
T ss_dssp CCCHHHHHHHHHTTCEEEEECCCCCTTTGGGCSSTTTTSTTCCSCCSTTTSTTSTTHHHHHHHHHHHHHHHHTCBCTTSC
T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 44999999999779959998730788987777641577643135667504899703699999999999999975540388
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~vPVl~Rp~hE~nG~WfwWg~~~~~p~~y~~lwr~~~~~l~~~~g~~Nliwv~sp~~~~~~~~~~~~~~YPGDdyVDivG 240 (381)
T d1odza_ 161 LIPVIFRLYHENTGSWFWWGDKQSTPEQYKQLFRYSVEYLRDVKGVRNFLYAYSPNNFWDVTEANYLERYPGDEWVDVLG 240 (381)
T ss_dssp BCCEEEECSCSTTSSSSTTSTTSSCHHHHHHHHHHHHHHHHTTSCCCSEEEEECCBCCSSCCHHHHHSSCCCTTTCSEEC
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 76289964210479865667889998999999999999998715986189986478787776444201089988677888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~D~Y~~~~~~~~~~~~~~~~l~~~~~~A~~~gKp~altE~G~~~~~~~~~~~~~~W~~~~l~~i~~~p~~~~i~y~~~W~ 320 (381)
T d1odza_ 241 FDTYGPVADNADWFRNVVANAALVARMAEARGKIPVISGIGIRAPDIEAGLYDNQWYRKLISGLKADPDAREIAFLLVWR 320 (381)
T ss_dssp CEEEECSSSCHHHHHHHHHHHHHHHHHHHHHTCEECBCEEEECHHHHHTTCCCTTHHHHHHHHHHHSTTGGGCSEEEECC
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 63557888753589999999999999998559951663036667711026765426999999997282222443899985
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 N~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~dF~~f~~~~~~lf~~dlp~ly~~p~~~~ 381 (381)
T d1odza_ 321 NAPQGVPGPNGTQVPHYWVPANRPENINNGTLEDFQAFYADEFTAFNRDIEQVYQRPTLIV 381 (381)
T ss_dssp CCTTCEEC--CCEECCCCSCCSSHHHHHTSHHHHHHHHHHSTTEECGGGCCSCSCCCEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHCHHHHHCCCCCC
T ss_conf 6766556666677763336777634457642899999976960113444807551677779
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=0 Score=28708.07 Aligned_cols=1 Identities=0% Similarity=-0.527 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~fp~l~~~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~ 80 (381)
T d1elua_ 1 QFPGLANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGC 80 (381)
T ss_dssp CCGGGTTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHH
T ss_conf 99878988895697636899999999999999865278765315679999999999999998397945199978858986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~ 160 (381)
T d1elua_ 81 DIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQ 160 (381)
T ss_dssp HHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCC
T ss_pred HHCCHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 21000233247853899546541132011122334542222322233333205899998640233222123333456531
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~ 240 (381)
T d1elua_ 161 VLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWR 240 (381)
T ss_dssp BCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 10035788987520345321022344334554442212222333333454422122305677741888986396100244
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 320 (381)
T d1elua_ 241 SITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQA 320 (381)
T ss_dssp TEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 54433333443344432222333223204555433001588744421101456667899998875089769647887653
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~nt~edid~ll~~l~e~~~ 381 (381)
T d1elua_ 321 GLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLADFGP 381 (381)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 1899983898899999999996896898668999799955788999999999999996691
|
| >d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: MGS-like domain: Mannosylglycerate synthase, MGS species: Rhodothermus marinus [TaxId: 29549]
Probab=100.00 E-value=0 Score=28709.77 Aligned_cols=1 Identities=0% Similarity=0.404 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 slVVIP~~NEe~~il~~~v~~~a~~P~~~eIvVvDdsSdDtt~~i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG~g~~ 80 (381)
T d2bo4a1 1 SLVVFPFKHEHPEVLLHNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMN 80 (381)
T ss_dssp CEEEEECCSSCHHHHHHHHHHHHHSTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHH
T ss_conf 98999727885889999999997589814999986999875999999852300113321001110023546578848899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~~g~d~V~g~y~R~~~~grvt~~l~~pll~~l~~~~~~~~i~d 160 (381)
T d2bo4a1 81 TALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFALLWPHTELSWIEQ 160 (381)
T ss_dssp HHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHHHHCTTSSGGGCSC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999997088888999758767677999999999876305758986314567882236755899999860201565054
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 Pl~G~~a~~R~~~~~L~~~~~v~~~~~~G~Di~lt~~A~~~G~rI~EV~i~~~~l~~~f~~v~~~~f~l~~~~~~~W~~~ 240 (381)
T d2bo4a1 161 PLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIPEGKAHRLYGGLDDLRTMLVECFAAIQSLQ 240 (381)
T ss_dssp TTCCCEEEEHHHHHHHHHCHHHHTCCSTTHHHHHHHHHHHTTCCEEEEECTTCCCCCCSCCGGGGHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
T ss_conf 77610104099999862434556567866244999999985974784478778777899999999999999987782363
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~p~~~~g~~~~~~p~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (381)
T d2bo4a1 241 HEVVGQPAIHRQEHPHRVPVHIAERVGYDVEATLHRLMQHWTPRQVELLELFTTPVREGLRTCQRRPAFNFMDEMAWAAT 320 (381)
T ss_dssp TCCCCSCCCEEECCCCCCCHHHHTCCCSCHHHHHHHHTSSCCHHHHHHGGGSCHHHHHHHHHTTTSCCCTTCCHHHHHHH
T ss_pred CEECCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 33322012022557445888888752047999999999755777999998569988888987444664778767999999
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (381)
T d2bo4a1 321 YHVLLEHFQPGDPDWEELLFKLWTTRVLNYTMTVALRGYDYAQQYLYRMLGRYRYQAALEN 381 (381)
T ss_dssp HHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999997301460688871056889999999999976079899999999877787876249
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=28707.57 Aligned_cols=1 Identities=0% Similarity=0.371 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~e~p~~~tedfgFk~l~~~~~~~~~~d~lP~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~ 80 (381)
T d1xipa_ 1 ASSLKDEVPTETSEDFGFKFLGQKQILPSFNEKLPFASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTF 80 (381)
T ss_dssp CCEECCCCCEEEESSCEEEEEEEEECSCCCTTCCCSSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCC
T ss_pred CCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCEEEEEEHHHHHHHHHCCCCCCCC
T ss_conf 97546667816646530587166212789544589644426899577788999889977999989978786556788862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~ip~v~~vafs~d~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~ 160 (381)
T d1xipa_ 81 KWEKEIPDVIFVCFHGDQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQL 160 (381)
T ss_dssp SEEEECTTEEEEEEETTEEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EECCCCCCEEEEEEECCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCEEEEEECCCCCCCC
T ss_conf 34168998689986189899995897899985100145446554556111021886069996589778999415864444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~~~~~~~ed~ 240 (381)
T d1xipa_ 161 AQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDE 240 (381)
T ss_dssp EESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSS
T ss_pred CCCCCEEEECCCCEEEEEECCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCC
T ss_conf 47752387338926999968968999818982036567788201578867786166899951756999987776666767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~ii~~~~~~~~f~~~~Di~~pfgs~~R~p~y~~~~l~~w~~~~~~l~iv~Ss~s~di~vl~~~~~~~~~~D~~ 320 (381)
T d1xipa_ 241 VSYDQKMYIIKHIDGSASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSKQVIEPSQDSE 320 (381)
T ss_dssp CCCCEEEEEEEEETTEEEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSSSEEEESSGGG
T ss_pred CCCCEEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEEECCCCEEEECCCC
T ss_conf 76433799982699983035256566776566667517999830056567868999556763456861367489812675
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 Ra~lP~~~~~d~Dt~piGlalD~ss~~~v~~p~~g~~~~~plP~l~vL~~~G~L~~ww~~~ 381 (381)
T d1xipa_ 321 RAVLPISEETDKDTNPIGVAVDVVTSGTILEPCSGVDTIERLPLVYILNNEGSLQIVGLFH 381 (381)
T ss_dssp CCBCCBCTTTCCBCCEEEEEEECSCCC--------------CCEEEEEETTSEEEEEEEEC
T ss_pred CEEECCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEEEEC
T ss_conf 3040357788876531589997124752315788822278998899996987899999879
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=100.00 E-value=0 Score=28707.18 Aligned_cols=1 Identities=0% Similarity=-1.521 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~p~~p~~~~~~~~~~~~~~~~~~~~v~i~~rDG~~L~~~v~~P~~~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~ 80 (381)
T d1mpxa2 1 TSPMTPDITGKPFVAADASNDYIKREVMIPMRDGVKLHTVIVLPKGAKNAPIVLTRTPYDASGRTERLASPHMKDLLSAG 80 (381)
T ss_dssp CCTTSCSSCSSCCCCCCTTCSEEEEEEEEECTTSCEEEEEEEEETTCCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 98989999998777776555866988999899998999999996899973089997567789765656665444320068
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~a~~Gy~vv~~d~RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~ 160 (381)
T d1mpxa2 81 DDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMA 160 (381)
T ss_dssp GHHHHHTTCEEEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEECCCCCCCCCCEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHH
T ss_conf 99999689799998137657889853315201210132006789999999998753588576504560365778889888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 a~~~~~~l~a~v~~~~~~d~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (381)
T d1mpxa2 161 LTNPHPALKVAVPESPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLE 240 (381)
T ss_dssp HTSCCTTEEEEEEESCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGG
T ss_pred HHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCC
T ss_conf 75356521043232454252010243468335322289998642110366112110135677787525654424023144
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~d~~w~~~s~~~~~~~~~i~vP~l~i~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~LviGPw~H~~~ 320 (381)
T d1mpxa2 241 QLPWWHKLTEHAAYDAFWQEQALDKVMARTPLKVPTMWLQGLWDQEDMWGAIHSYAAMEPRDKRNTLNYLVMGPWRHSQV 320 (381)
T ss_dssp GSHHHHHHHHTCSSCHHHHTTCHHHHHHTSCCCSCEEEEEETTCSSCSSHHHHHHHHHGGGCTTSSSEEEEEESCCTTGG
T ss_pred CCHHHHHHHHCCCCCCHHHHCCCHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf 46177887527875301232690266652345674389842555775653899999999842666783699936767787
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------~ 1082 (1223)
=
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wFD~~LKg~~~~~~~ppV~~~~~G~~~Wr~~~~W 381 (381)
T d1mpxa2 321 NYDGSALGALNFEGDTARQFRHDVLRPFFDQYLVDGAPKADTPPVFIYNTGENHWDRLKAW 381 (381)
T ss_dssp GSCCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTTCCCCCCCSEEEEETTTTEEEEESSS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCC
T ss_conf 6677767766665101134689999999999727999999999889997899968407979
|
| >d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Xylanase inhibitor TAXI-I species: Wheat (Triticum aestivum) [TaxId: 4565]
Probab=100.00 E-value=0 Score=28707.68 Aligned_cols=1 Identities=0% Similarity=-2.154 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~pi~~~~~~~~Y~~~i~iGtpliiDTGSs~~Wvpc~~c~~~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~ 80 (381)
T d1t6ex_ 1 LPVLAPVTKDPATSLYTIPFHDGASLVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPC 80 (381)
T ss_dssp CCEEEEEEECTTTCCEEEEEETTEEEEEETTCCCEEECCCTTCCCCCCBTTSHHHHHHHSSCCTTCCCCCC------CBC
T ss_pred CCEEEEECCCCCCCEEEEEEECCCCEEEECCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98798112269988599999769866998998811460678877766562780264235757888887666678778888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~Y~~Gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGi~Glg~~~~s~~~ql~~~~~~ 160 (381)
T d1t6ex_ 81 TAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKV 160 (381)
T ss_dssp EECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTSCTTEEEEEECSSSTTSHHHHHHHHHTC
T ss_pred CEEEEEECCCCEEEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCC
T ss_conf 60677838998888799999999653223552025885112202435665444667630210588873157887651376
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~fsl~l~~~~~~~~~~~~g~~~~~~~~g~~~~~pi~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~i~DTGtt~ 240 (381)
T d1t6ex_ 161 ANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPY 240 (381)
T ss_dssp CSEEEEECCSSSCEEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEECCCCTTCSCTTCEEECSSCSS
T ss_pred CEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEEECCEEECCCCCCCCCCCEEEECCCCE
T ss_conf 44899554777654237603656633357833777654157874257888778518846615755456763687427734
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~~f~~~~~~~i~~~~y~~~ 320 (381)
T d1t6ex_ 241 VLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVD 320 (381)
T ss_dssp EEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTEECCCCEEEEETTSCEEEECHHHHEEE
T ss_pred EECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCEEEECHHHEEEE
T ss_conf 97778999999999988751445664211101466677522622565555565431461799975996799770473899
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~Cl~i~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfA~~~~~~~~~~~ 381 (381)
T d1t6ex_ 321 VKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLPHFTGCGGL 381 (381)
T ss_dssp EETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECCTTCCSCC-
T ss_pred ECCCCEEEEEEECCCCCCCCCCCCCEEECHHHHCCEEEEEECCCCEEEEEECCCCCCCCCC
T ss_conf 0798489999832556677888973898979848689999899999999877888887688
|
| >d2guya2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus oryzae, Taka-amylase [TaxId: 5062]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus oryzae, Taka-amylase [TaxId: 5062]
Probab=100.00 E-value=0 Score=28705.82 Aligned_cols=1 Identities=0% Similarity=0.205 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~p~~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gGd~~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~~ 80 (381)
T d2guya2 1 ATPADWRSQSIYFLLTDRFARTDGSTTATCNTADQKYCGGTWQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYH 80 (381)
T ss_dssp CCHHHHTTCCEEEECHHHHCBTTCCSSCCCCGGGTCCCCBCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTT
T ss_pred CCCCCCCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99702147829999755211799988877787667647848999999699998779998996988778766688899998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 gY~~~d~~~vd~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (381)
T d2guya2 81 GYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVANHMGYDGAGSSVDYSVFKPFSSQDYFHPFCFIQNYEDQTQ 160 (381)
T ss_dssp SCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCEEBCGGGCCGGGSBSCCSGGGBCCSCBCCCTTCHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
T ss_conf 75046646655677877899999989886063213100124666545765222334689875431001344445444554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~w~~~~giDGfR~D~~~~~~~~f~~~~~~~~~~~~igE~~~~~~~~~~ 240 (381)
T d2guya2 161 VEDCWLGDNTVSLPDLDTTKDVVKNEWYDWVGSLVSNYSIDGLRIDTVKHVQKDFWPGYNKAAGVYCIGEVLDGDPAYTC 240 (381)
T ss_dssp HHHSBEECSSEEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCGGGHHHHHHHHTSEEEECCCCSCHHHHG
T ss_pred CCEEECCCCCCCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHCCHHHHHHHHHCCEEEEEEECCCCCHHHHC
T ss_conf 32023257765510103355889999998765103113555103403754589999764321402563110364075540
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~enHD~~R~~s~~~~~~~~~~a~~~l~t 320 (381)
T d2guya2 241 PYQNVMDGVLNYPIYYPLLNAFKSTSGSMDDLYNMINTVKSDCPDSTLLGTFVENHDNPRFASYTNDIALAKNVAAFIIL 320 (381)
T ss_dssp GGGGTSSEEBCHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHSSCGGGSEECSCCTTSCCGGGTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 23324444224066799999996267761778999998874067643000101676752210225889999999999998
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~pGiP~iy~G~E~g~~g~~~~~~r~~~~~~~~~~~~~l~~~i~~L~~lR~~~~~~~~~~~~ 381 (381)
T d2guya2 321 NDGIPIIYAGQEQHYAGGNDPANREATWLSGYPTDSELYKLIASANAIRNYAISKDTGFVT 381 (381)
T ss_dssp SSSEEEEETTGGGTCCCCSTTTTCCCGGGGTCCTTSHHHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCEEECCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 0897298736002757998811001466556767879999999999997488641699879
|
| >d2aaaa2 c.1.8.1 (A:1-381) Fungal alpha-amylases {Aspergillus niger, acid amylase [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Fungal alpha-amylases species: Aspergillus niger, acid amylase [TaxId: 5061]
Probab=100.00 E-value=0 Score=28704.29 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~W~~~~iY~i~~~~F~~~~~~~~~~~~~~~~~~~gG~~~g~~~kLdyL~~LGv~~I~L~Pi~~~~~~~~~~~~~~~ 80 (381)
T d2aaaa2 1 LSAASWRTQSIYFLLTDRFGRTDNSTTATCNTGNEIYCGGSWQGIIDHLDYIEGMGFTAIWISPITEQLPQDTADGEAYH 80 (381)
T ss_dssp CCHHHHTTCCEEECCHHHHCCTTCCSCCCCCGGGCSCCCCCHHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCSTT
T ss_pred CCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 98034488727999838106899998877777767758938999999799999769998994987668765788998875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 gY~~~d~~~id~~~Gt~~~~k~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (381)
T d2aaaa2 81 GYWQQKIYDVNSNFGTADNLKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLTM 160 (381)
T ss_dssp SCSEEEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCBSSCGGGCCGGGSBSCCSGGGBCCCCBCCCTTCHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56646543311024988999999998866311110023445433456776555333587554345588766456445555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~pdln~~np~v~~~~~~~~~~~~~~~giDGfR~D~~~~~~~~f~~~~~~~~~~~~igE~~~~~~~~~~ 240 (381)
T d2aaaa2 161 VEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRIDSVLEVQPDFFPGYNKASGVYCVGEIDNGNPASDC 240 (381)
T ss_dssp HHHSBEECSSSEECBBCTTSHHHHHHHHHHHHHHHHHHTCCEEEESCSTTSCGGGHHHHHHHHTSEEEECCCCSCHHHHG
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH
T ss_conf 67775678666675313233255667766644204221322000001233307899998744532233530379813321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~nHD~~R~~~~~~~~~~~~~a~a~llt 320 (381)
T d2aaaa2 241 PYQKVLDGVLNYPIYWQLLYAFESSSGSISNLYNMIKSVASDCSDPTLLGNFIENHDNPRFAKYTSDYSQAKNVLSYIFL 320 (381)
T ss_dssp GGGGTSSEEBCHHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHCSCGGGSEECSCCTTSCCGGGTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 11344333002157899999985487307899999974331157721103435667721041246989999999999997
Q ss_pred ------------------------------------------------------------C
Q ss_conf ------------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~pG~P~iy~G~E~g~~g~~~p~~r~~~~~~~~~~~~~l~~~i~~L~~lRk~~~al~~~~~~ 381 (381)
T d2aaaa2 321 SDGIPIVYAGEEQHYAGGKVPYNREATWLSGYDTSAELYTWIATTNAIRKLAIAADSAYIT 381 (381)
T ss_dssp SSSEEEEETTTTTTCCCCTTTTTCCCGGGGTTCTTCHHHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCCCCCC
T ss_conf 0797675747214878998834111367677746769999999999997049453279879
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=28639.41 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~t~~~h~~~~~dp~ga~~~PI~~sstf~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LE~~~~a~~fsSGMaAisal 80 (380)
T d1ibja_ 1 ASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAV 80 (380)
T ss_dssp CCHHHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH
T ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH
T ss_conf 97767624279999999896188557766461887766895140898868999999999971986188603199999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 l~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~ 160 (380)
T d1ibja_ 81 THLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAH 160 (380)
T ss_dssp HTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred HHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 98627998799974033554012222110454212235751678877775067618996142443223445899999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~g~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rg 240 (380)
T d1ibja_ 161 AQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRG 240 (380)
T ss_dssp TTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHH
T ss_pred HCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC
T ss_conf 75980896243004300255455898999606520256667554433344126777787630466773787779999842
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 l~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l~l~~~a~ 320 (380)
T d1ibja_ 241 IKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAV 320 (380)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 31445538889888899999997389866996056456864211222456542111111127999999998389175741
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlE~~eDLi~Dl~qAl~~l~~ 380 (380)
T d1ibja_ 321 SFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL 380 (380)
T ss_dssp CCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 568766130485223012089999997697939599983409999999999999976689
|
| >d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Pyruvate phosphate dikinase, N-terminal domain domain: Pyruvate phosphate dikinase, N-terminal domain species: Maize (Zea mays) [TaxId: 4577]
Probab=100.00 E-value=0 Score=28639.09 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~f~~~~~~~~~~~~~lvGGK~AnLgel~~~G~pVP~GFvITt~Ay~~Fi~~n~~l~~~L~~~I~~~l~~~~~~~~ 80 (380)
T d1vbga3 1 KKRVFHFGKGKSEGNKTMKELLGGKGANLAEMASIGLSVPPGFTVSTEACQQYQDAGCALPAGLWAEIVDGLQWVEEYMG 80 (380)
T ss_dssp CCSEEEEETTEESSCTTCTTTTHHHHHHHHHHHHTTCCCCCEEEECHHHHHHHHHTTSCCCTTHHHHHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 98899879986568814475072889989999978599999888549999999980764658799999999987787633
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~e~~a~~s~a~~~~~~~~~~~~~~~~~~~~~~~~ 160 (380)
T d1vbga3 81 ATLGDPQRPLLLSVRSGAAVSMPGMMDTVLNLGLNDEVAAGLAAKSGERFAYDSFRRFLDMFGNVVMDIPRSLFEEKLEH 160 (380)
T ss_dssp CBTTCSSSBCCEEEECCCSSCCTTCCCCEEEETCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHH
T ss_conf 22356421011001232034566767787751352488998863231101766555553101100034024567788888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~q~m~~~~~~gv~ft~~p~~~~~~~~~I~a~~Glg~~v 240 (380)
T d1vbga3 161 MKESKGLKNDTDLTASDLKELVGQYKEVYLSAKGEPFPSDPKKQLELAVLAVFNSWESPRAKKYRSINQITGLRGTAVNV 240 (380)
T ss_dssp HHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTCCCCCCCCEEE
T ss_pred HHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCEEECCCCCCCEEE
T ss_conf 88762304543136987566788998876650487422226888887654212102477100156502641330124245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~La~l~~~iE~~yg~P 320 (380)
T d1vbga3 241 QCMVFGNMGNTSGTGVLFTRNPNTGEKKLYGEFLVNAQGEDVVAGIRTPEDLDAMKNLMPQAYDELVENCNILESHYKEM 320 (380)
T ss_dssp EECCCSCSSTTCEEEEEESSCTTTCCSSCEEEEEESSCHHHHHHTSCCCEETHHHHHHCHHHHHHHHHHHHHHHHHHCSC
T ss_pred EEEEECCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 56663388737667613443444675213322112555545300044366531022238899999999999999981985
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 qDIEWA~~dg~L~ILQaRPv~~~~~aa~~~~~d~~~~~~i~~~~~~~~~~p~~~~~~l~~ 380 (380)
T d1vbga3 321 QDIEFTVQENRLWMLQCRTGKRTGKSAVKIAVDMVNEGLVEPRSAIKMVEPGHLDQLLHP 380 (380)
T ss_dssp EEEEEEEETTEEEEEEEEECCCCHHHHHHHHHHHHHTTSSCHHHHGGGSCHHHHHHTTSC
T ss_pred CEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHCCC
T ss_conf 105999989989999744787557879999999988599688999873898577461399
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=100.00 E-value=0 Score=28635.59 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~LF~P~~ig~~~lkNRiv~~pm~~~~~~~G~p~~~~~~~y~~rA~Ggglii~~~~~V~~~~~~~~~~~~~~~d~~i~ 80 (380)
T d1q45a_ 1 SNETLFSSYKMGRFDLSHRVVLAPMTRCRALNGVPNAALAEYYAQRTTPGGFLISEGTMVSPGSAGFPHVPGIYSDEQVE 80 (380)
T ss_dssp CCCCTTSCEEETTEEESCSEEECCCCCCCSGGGCCCHHHHHHHHHTCCTTCEEEEEEEESSTTCCCSTTCCBCSSHHHHH
T ss_pred CCCCCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 98635898118999856875884438883889979999999999998497799974508877757899986217779988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~k~l~~~vh~~g~~~~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~ 160 (380)
T d1q45a_ 81 AWKQVVEAVHAKGGFIFCQLWHVGRASHAVYQPNGGSPISSTNKPISENRWRVLLPDGSHVKYPKPRALEASEIPRVVED 160 (380)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCTTSCCGGGSGGGCCCEESSSCCCCTTTCCEECTTSCEECCCCCEECCGGGHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCHHHHHHHHHH
T ss_conf 99999999873576258875307866665545567787666557666677224267755568998843787889999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 f~~aA~~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~~ 240 (380)
T d1q45a_ 161 YCLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLD 240 (380)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGG
T ss_pred HHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 99999999982865366000211367654165335576655764231036677779988887015672278752022366
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~~~~~ 320 (380)
T d1q45a_ 241 ATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGFNKEL 320 (380)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHSCSCEEEESSCCHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHH
T ss_conf 42133123333210256676653135632477416754433334566567625667889988652488589679989999
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ae~~l~~G~~DlV~~gR~liaDPdlv~K~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (380)
T d1q45a_ 321 GMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRKTFYTQDPVVGYTDYPFLAP 380 (380)
T ss_dssp HHHHHHTTSCSEEEESHHHHHCTTHHHHHHTTCCCCCCCGGGSSCCCSSTTTTCSCCCCC
T ss_pred HHHHHHCCCCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999998699632455299887924999996299988887466458999898577789897
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=28634.12 Aligned_cols=1 Identities=0% Similarity=-0.625 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~G 80 (380)
T d2gmha1 1 CKVPRITTHYTIYPRDQDKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSG 80 (380)
T ss_dssp CCSCCCCCCTTTSCTTSCGGGSSCCCCCCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf 98885335642245335754444574201363888998977899999999985213413999799981788899874535
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 gvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~ 160 (380)
T d2gmha1 81 ACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYP 160 (380)
T ss_dssp CEECTHHHHHHCTTHHHHTCCCCEECCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEET
T ss_pred CCCCHHHHHHHCCCHHHHCCCCCCCEECCEEEEEECCCCCCCCCCCCHHCCCCCCEEEHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 16668899987630344355301320012279963366466545670110245551320467888999987631543443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~~sip 240 (380)
T d2gmha1 161 GYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQSIP 240 (380)
T ss_dssp TCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGGGGCC
T ss_pred ECCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 01001344225773110122332323334556555643003463799956178866288876542103665545666665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~SG~lAAeai~~al~~~~~~~~~~~~~~~~y~~~~~~s~~~~eL~~~rn~~ 320 (380)
T d2gmha1 241 KLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWVWKELYSVRNIR 320 (380)
T ss_dssp CCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCCCCSSSSCCCTHHHHHHHTSHHHHHHHHTTTTT
T ss_pred CCCCCCEEEEECCCCCCCHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 34069806873354313512148753220237889999999997188643103444556889987628999999863877
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~g~~~g~~~~~~~~~~~~g~~p~tl~~~~~d~~~l~~~~~~~~i~y~~~d~~~~ 380 (380)
T d2gmha1 321 PSCHGILGVYGGMIYTGIFYWIFRGMEPWTLKHKGSDSDQLKPAKDCTPIEYPKPDGQIS 380 (380)
T ss_dssp GGGGSTTTHHHHHHHHHHHTTTTTTCCSCCCCCCSCGGGCCCCGGGSCCCCCCCCCSSSS
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 898752108999999999999857898701789997889988798589998999989169
|
| >d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: HAD-like superfamily: HAD-like family: Hypothetical protein MW1667 (SA1546) domain: Hypothetical protein MW1667 (SA1546) species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=28633.79 Aligned_cols=1 Identities=0% Similarity=-0.959 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~i~fd~dGVll~~~~~~D~s~ltv~~ll~s~e~Lg~~~~i~~~k~~~~t~~~i~~~~~~~~~il~~~k~~g~n~~~dl 80 (380)
T d1qyia_ 1 MKKILFDVDGVFLSEERCFDVSALTVYELLMDKCYLGLHSHIDWETLTDNDIQDIRNRIFQKDKILNKLKSLGLNSNWDM 80 (380)
T ss_dssp CCEEEECSBTTTBCSHHHHHHHHHHHHHHHHCTTTTCCSCCCCGGGCCHHHHHHHHHHHHTTTHHHHHHHHTTCCCHHHH
T ss_pred CCEEEEECCCEEECCEEECCHHHHHHHHHHHCHHHCCCCEEEECCCCCCHHHHHHEEEEECCHHHHHHHHHCCCCHHHHH
T ss_conf 96699937807982433203676658887612011256404533765510043311133053246676662688806999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~k~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (380)
T d1qyia_ 81 LFIVFSIHLIDILKKLSHDEIEAFMYQDEPVELKLQNISTNLADCFNLNEQLPLQFLDNVKVGKNNIYAALEEFATTELH 160 (380)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHCSSCHHHHHTTSGGGCSSCCCCCTTTTHHHHTTCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCHHHCC
T ss_conf 99999999998774348985778987775436408999875365556775148888765324553144755521376528
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~a~~~~r~l~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~p~~~v~~~l~~lk~aGi~v~i~Tg~ 240 (380)
T d1qyia_ 161 VSDATLFSLKGALWTLAQEVYQEWYLGSKLYEDVEKKIARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGIATGR 240 (380)
T ss_dssp CSCCGGGSTTCHHHHHHHHHHHHHHHHHHHHHHHHCSCCSCSSCCCTTTTCCBSSCHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 75888999986899999999999877220223345533156675423013565334363999999999879959998899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~a~~il~~lgl~~~F~~~~i~~~~d~~~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~k~~iv~~~~~~~~~~~~ 320 (380)
T d1qyia_ 241 PYTETVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFI 320 (380)
T ss_dssp CHHHHHHHHHHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTHHHHHHHHCCCGGGHHHHHHCCTTCSCTTTEEE
T ss_pred CHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 79999999998199534785058744133311220331102369986999999998088778899999973899886999
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 vGD~~~D~~aak~Ag~~~Igv~~G~~g~~~~~el~~~~AD~ii~~~~el~~il~~l~~~~ 380 (380)
T d1qyia_ 321 VGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVLDNLLEHH 380 (380)
T ss_dssp EESSHHHHHHHHHHTCEEEEESCBTTBGGGHHHHHHTTCSEEESSGGGHHHHHSCTTTTC
T ss_pred ECCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHHHCC
T ss_conf 889989999999879988999458888643778976799999889999999999998509
|
| >d1elja_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: D-maltodextrin-binding protein, MBP species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=28631.71 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~k~~eg~i~~W~~~~~~~~~~~~~~~~~F~~~~p~I~v~~~~~~~~~~~l~~~~~~g~~pDi~~~~~~~~~~~~~~g~l~ 80 (380)
T d1elja_ 1 MKIEEGKVVIWHAMQPNELEVFQSLAEEYMALCPEVEIVFEQKPNLEDALKAAIPTGQGPDLFIWAHDWIGKFAEAGLLE 80 (380)
T ss_dssp CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCTTEEEEEEECTTHHHHHHHHTTTTCSCSEEEEEGGGHHHHHHTTCBC
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCC
T ss_conf 98766389999589803899999999999987839799998689999999999976999819999937799999879963
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~dG~~y~~P~~~~~~~l~ynkd~~~~~P~T~~e~~~~~~~l~~~~~~~~~~~~~~~~ 160 (380)
T d1elja_ 81 PIDEYVTEDLLNEFAPMAQDAMQYKGHYYALPFAAETVAIIYNKEMVSEPPKTFDEMKAIMEKYYDPANEKYGIAWPINA 160 (380)
T ss_dssp CCTTTCCHHHHTTBCHHHHHHTEETTEECEEEEEEEECEEEEETTTCSSCCSSHHHHHHHHHHHCBGGGTBCSCBCCCSH
T ss_pred CCCHHHHHCCCCCCCHHHHHHEEECCEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 08665400221112166664103454301122222103566666676421332899999999986044771454311454
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~ 240 (380)
T d1elja_ 161 YFISAIAQAFGGYYFDDKTEQPGLDKPETIEGFKFFFTEIWPYMAPTGDYNTQQSIFLEGRAPMMVNGPWSINDVKKAGI 240 (380)
T ss_dssp HHHHHHHTTTSCCSEETTTTEECTTSHHHHHHHHHHHHHTGGGSCSCCCHHHHHHHHHTTSSSEEEECGGGHHHHHHTTC
T ss_pred CCCCHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 32201120478500033454467798899999999987443233545750465666405761155244288999875430
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fi~~l~s~e~~~~~~~~~~g~~P~~~~~~~~~~~~~~~ 320 (380)
T d1elja_ 241 NFGVVPLPPIIKDGKEYWPRPYGGVKLIYFAAGIKNKDAAWKFAKWLTTSEESIKTLALELGYIPVLTKVLDDPEIKNDP 320 (380)
T ss_dssp CEEEECCCCEEETTEEECCCCEEEEEEEEEBTTCSCHHHHHHHHHHHHHCHHHHHHHHHHHCCBCCBGGGGGCHHHHTCH
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCHHHHCCH
T ss_conf 26644458878776666652211000011244674599999999986326999999998348888777788598755193
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~g~~~~d~~~al~~~~~~i~~~~k 380 (380)
T d1elja_ 321 VIYGFGQAVQHAYLMPKSPKMSAVWGGVDGAINEILQDPQNADIEGILKKYQQEILNNMQ 380 (380)
T ss_dssp HHHHHHHHHHTCEECCCCTTHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 899999999518207889878999999999999997789992099999999999999529
|
| >d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endoglucanase CelA species: Clostridium cellulolyticum [TaxId: 1521]
Probab=100.00 E-value=0 Score=28631.51 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~g~nlgn~lda~~~~~~~~~~~~e~~Wgnp~~t~~~i~~ik~~Gfn~vRi 80 (380)
T d1edga_ 1 MYDASLIPNLQIPQKNIPNNDGMNFVKGLRLGWNLGNTFDAFNGTNITNELDYETSWSGIKTTKQMIDAIKQKGFNTVRI 80 (380)
T ss_dssp CCCGGGSCCCCCCCCCCCCSHHHHHHHHHCSEEECTTSTTCCCCSSCCSGGGHHHHTTCSCCCHHHHHHHHHHTCCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 95434576564465566888789999864784623867036887656678987776699616699999999869987997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 Pv~w~~~~~~~~~~i~~~~l~~v~~vV~~a~~~Gl~VIldlHh~~~~~~~~~~~~~~~~~~~~~~~~~W~qiA~~fkd~~ 160 (380)
T d1edga_ 81 PVSWHPHVSGSDYKISDVWMNRVQEVVNYCIDNKMYVILNTHHDVDKVKGYFPSSQYMASSKKYITSVWAQIAARFANYD 160 (380)
T ss_dssp CCCCGGGEETTTTEECHHHHHHHHHHHHHHHTTTCEEEEECCSCBCTTTSBCSSGGGHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 34078826899885298999999999999997699799845667887766678656757799999999999887606898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~l~fel~NEP~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~IR~~~~~n~~r~i~v~g~~~~~~~~~~~~~~~p~ 240 (380)
T d1edga_ 161 EHLIFEGMNEPRLVGHANEWWPELTNSDVVDSINCINQLNQDFVNTVRATGGKNASRYLMCPGYVASPDGATNDYFRMPN 240 (380)
T ss_dssp TTEEEECCSSCCCTTSTTTTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHTCGGGGTSCEEEECGGGCHHHHHSTTCCCCC
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHCCCC
T ss_conf 66999621344446786544532223108999999999999999999984457886089857886477543000111554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 d~~~~~~~li~s~H~Y~p~~f~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~giPviiGEfG~~~~~~~~~r~ 320 (380)
T d1edga_ 241 DISGNNNKIIVSVHAYCPWNFAGLAMADGGTNAWNINDSKDQSEVTWFMDNIYNKYTSRGIPVIIGECGAVDKNNLKTRV 320 (380)
T ss_dssp CCTTCCSCEEEEEECCCSHHHHTSCGGGTCCCCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCEEEEEECCCCSSCHHHHH
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHH
T ss_conf 45677887799975157643566667767877655576113899999999999988754962999623376789858999
Q ss_pred -----------------------------------------------------------C
Q ss_conf -----------------------------------------------------------5
Q 000920 1082 -----------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~~~~a~~~gi~~~~Wdn~~~~~~~~~fg~~dr~~~~w~~p~~~~~~~~~~~g~~~ 380 (380)
T d1edga_ 321 EYMSYYVAQAKARGILCILWDNNNFSGTGELFGFFDRRSCQFKFPEIIDGMVKYAFGLIN 380 (380)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCCCSSSSCCCCCEETTTTEESSHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 999999999998699279987998888866745153788865889999999998648999
|
| >d1lj5a_ e.1.1.1 (A:) Plasminogen activator inhibitor-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Plasminogen activator inhibitor-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28558.62 Aligned_cols=1 Identities=0% Similarity=-1.290 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~F~~~l~~~l~~~~~~~N~v~SP~si~~~La~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~ 80 (379)
T d1lj5a_ 1 VHHPPSYVAHLASDFGVRVFQQVAQASKDRNVVFSPYGVASVLAMLQLTTGGETQQQIQAAMGFKIDDKGMAPALRHLYK 80 (379)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHSTTBCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHTSCTTSTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 98976888888849999999998723969869987899999999999867728999999970999873778999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~l~~~~~~~~l~~an~l~v~~~~~~~~~f~~~~~~~y~~~~~~vdF~~~~~a~~~IN~wv~~~T~g~I~~~~~~~~l~~~ 160 (379)
T d1lj5a_ 81 ELMGPWNKDEISTTDAIFVQRDLKLVQGFMPHFFRLFRSTVKQVDFSEVERARFIINDWVKTHTKGMISNLLGKGAVDQL 160 (379)
T ss_dssp HHHCGGGSSEEEEEEEEEEETTSCCCTTHHHHHHHHHSCCCEEECTTSHHHHHHHHHHHHHHTTTTSCCCSSCTTSSCTT
T ss_pred HHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 86175554520024478773567245788998787636600135555268999999999996049932331376678965
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 t~~~lvna~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~V~~M~~~~~~~~~~~~~~~~~~~~vv~Lp~~~~~~sm~iilP 240 (379)
T d1lj5a_ 161 TRLVLVNALYFNGQWKTPFPDSSTHRRLFHKSDGSTVSVPMMAQTNKFNYTEFTTPDGHYYDILELPYHGDTLSMFIAAP 240 (379)
T ss_dssp CCEEEEEEEEEEEEBSSCCCCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEBTTSSEEEEEEEE
T ss_pred CEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEECC
T ss_conf 40466721799511347677355533210346785576112354151205885036666058999603798478999647
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~v~l~lPkf~i~~~~dl~~~L~~lGl~~~F~~~~adfs~is~~~~l~vs~v 320 (379)
T d1lj5a_ 241 YEKEVPLSALTNILSAQLISHWKGNMTRLPRLLVLPKFSLETEVDLRKPLENLGMTDMFRQFQADFTSLSDQEPLHVAQA 320 (379)
T ss_dssp SSTTSCTHHHHTTCCHHHHHHHHHHCEEEEEEEEEECEEEEEEEECHHHHHHTTCCGGGCTTTCCCTTTCSSSCCCEEEE
T ss_pred CCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEEEEEEEEECHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 76666367776530077788777634313308999999984100277878867972235765565223678898077656
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~hk~~iev~E~G~~a~a~t~~~~~~~~~~~~f~~drPF~f~I~~~~t~~~lf~G~v~~P 379 (379)
T d1lj5a_ 321 LQKVKIEVNESGTVASSSTAVIVSARMAPEEIIMDRPFLFVVRHNPTGTVLFMGQVMEP 379 (379)
T ss_dssp EEEEEEEECSSEEEEEEEEEEEESSCCCCCCCCBCCEEEEEEEETTTTEEEEEEEEECC
T ss_pred EEEEEEEECCCCEEECCCCEEEECCCCCCCEEEEECCEEEEEEECCCCCEEEEEEECCC
T ss_conf 88999998787145022322542268999879940998999999999968999995398
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=100.00 E-value=0 Score=28556.10 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (379)
T d2f5va1 1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLV 80 (379)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSSTTCCTTCSHHHHHCGGGHHHHHHHTCEESCCCCCCCC
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99732589989688999999999658893999936899987522346222023346664445434566333566554555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 160 (379)
T d2f5va1 81 VDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKA 160 (379)
T ss_dssp CCCSCTTSCCCSSCCCCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEECCCCCCHHHHHHCCCCCHHHHCCCCCCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCCHHHH
T ss_conf 66777777667876761688821214442454122303799846216683458988863012457776688686025564
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~ 240 (379)
T d2f5va1 161 ESYFQTGTDQFKESIRHNLVLNKLAEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVA 240 (379)
T ss_dssp HHHHTEESCTTTTCHHHHHHHHHHHHHTTTSSCCEECCEEEEEEETTEEEECCHHHHCCCCCEEETTEEEEEEEEECSEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHCCHHHHCCCCCEEECCCE
T ss_conf 44454899999877775277877553445656765444210047888788589886343310433776489999956999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~~~g~h~mG~~~~ 320 (379)
T d2f5va1 241 CERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLPSLGSHRMGFDEK 320 (379)
T ss_dssp EEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSSTTTTBTCBCSCTT
T ss_pred EEEEEEECCCCEEEEEEEEECCCCEEEEEECEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 99999818999899999997999979999650899655766898997322002223345566753166545044566888
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~vvd~~~~v~g~~nlyv~d~sv~p~~~~~nPt~t~~alA~r~a~~i~~~~~~~~~~ 379 (379)
T d2f5va1 321 EDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTPSPFT 379 (379)
T ss_dssp TTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCSHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 88724788975213289797388556775656818889999999999999862458999
|
| >d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Salmonella sialidase species: Salmonella typhimurium, strain lt2 [TaxId: 90371]
Probab=100.00 E-value=0 Score=28553.74 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~yRiP~L~~~~~G~llA~~e~R~~~~~d~~~~div~~rS~DgGkTWs~~ 80 (379)
T d3sila_ 1 EKSVVFKAEGEHFTDQKGNTIVGSGSGGTTKYFRIPAMCTTSKGTIVVFADARHNTASDQSFIDTAAARSTDGGKTWNKK 80 (379)
T ss_dssp CEEEEECTTCCCCBCTTSCBCCCSBGGGBCCEEEEEEEEECTTCCEEEEEEEESSCSCSSSCEEEEEEEESSSSSCCEEE
T ss_pred CCCEEEEECCCCCCCCCCCEEEECCCCCCEEEEECCEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 94089984775715889858996479986255746689997999599999667789887777519999913796589999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~i~~~~~~~~~~~~~~p~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~g~tw~~p~~~~~~ 160 (379)
T d3sila_ 81 IAIYNDRVNSKLSRVMDPTCIVANIQGRETILVMVGKWNNNDKTWGAYRDKAPDTDWDLVLYKSTDDGVTFSKVETNIHD 160 (379)
T ss_dssp EEECCCCSCTTTCEEEEEEEEEEEETTEEEEEEEEEEESSCCSCGGGCCSSSSCTTCEEEEEEESSTTSCCEEECCSHHH
T ss_pred EECCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 88647998765243477647887899978999999735788875430135678774247887658610001467425321
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~g~g~gi~~~~g~l~~p~~~~~~~~~~~~~~~~~~~sddgg~w~~~~~~~~~~~~E~~vve~dG~ll~ 240 (379)
T d3sila_ 161 IVTKNGTISAMLGGVGSGLQLNDGKLVFPVQMVRTKNITTVLNTSFIYSTDGITWSLPSGYCEGFGSENNIIEFNASLVN 240 (379)
T ss_dssp HHHHHCSEEEEEECSEECEECTTSCEEEEEEEEECTTSSCSEEEEEEEESSSSSEECCSCCEECTTCCEEEEEETTEEEE
T ss_pred CCCCCCCEEEECCCCCCEEEECCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCEEEECCCCEEE
T ss_conf 12236530455057662476046534645898815899862799999857887533540356778877889864885799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~R~~g~~~v~~S~DgG~TWse~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~r~~~~~~~s~d~g~tW~~~ 320 (379)
T d3sila_ 241 NIRNSGLRRSFETKDFGKTWTEFPPMDKKVDNRNHGVQGSTITIPSGNKLVAAHSSAQNKNNDYTRSDISLYAHNLYSGE 320 (379)
T ss_dssp EECCSSBCBCEEESSSSSCCEECTTTTTCSBCCTTCCCCEEEEEEETTEEEEEEEEECCTTSSTTCCCEEEEEECTTTCC
T ss_pred EEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCC
T ss_conf 98717966999986898623145665323221224321226883469919999889888888635899974688867788
Q ss_pred ----------------------------------------------------------C
Q ss_conf ----------------------------------------------------------5
Q 000920 1082 ----------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~aYS~l~~~~~~~~~~l~~lyE~~~~i~~~~lt~~l~~~~~~~ 379 (379)
T d3sila_ 321 VKLIDDFYPKVGNASGAGYSCLSYRKNVDKETLYVVYEANGSIEFQDLSRHLPVIKSYN 379 (379)
T ss_dssp EEEEEEEECSCCCTTSCCCEEEEEEEETTEEEEEEEEEETTEEEEEECGGGHHHHHTCC
T ss_pred CEEEECCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCEEEHHHHHHHHHHCCCC
T ss_conf 67995147501589970312248747989999999998999878369776477733479
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=100.00 E-value=0 Score=28482.81 Aligned_cols=1 Identities=100% Similarity=1.101 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 ~~~~~~~~~~~~~LtfdDVllvP~~st~~sr~V~l~t~lt~~~~l~iPIIsApMdtVt~~~mA~als~~GGLGvLhr~~~ 80 (378)
T d1jr1a1 1 GLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNCT 80 (378)
T ss_dssp CBCHHHHTSSCCCCCGGGEEECCCCCCSCGGGCBCCEESSSSCEESSCEEECCCTTTCSHHHHHHHHHHTCEEEECCSSC
T ss_pred CCCHHHHHCCCCCCCCCCEEEECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCC
T ss_conf 98978862568888844679847988776777562069887856899879799987388999999997899469769999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~~~~~~~~~l~~agv~vi~id~a~g~~~~~~~~i~~ik~~~~~ 160 (378)
T d1jr1a1 81 PEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPN 160 (378)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSSTHHHHHHHHHHHHTCCEEEECCSSCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHEEHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999887641104327643335546789999956687789999999751555576403676202357999999987899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakA 240 (378)
T d1jr1a1 161 LQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKA 240 (378)
T ss_dssp CEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHH
T ss_pred CCEEECCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCEEEE
T ss_conf 72530220129999999982999786033135444454222347665202567887511569853425333547732468
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 la~GAd~VMmGs~fAgt~EspG~~~~~~g~~~k~~~gm~S~~a~~~~~~~~~~~~~~~~~~~~~eG~~~~v~~~G~v~~~ 320 (378)
T d1jr1a1 241 LALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKF 320 (378)
T ss_dssp HHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSTTTC----------------CCCCCBCEEEEECCBCHHHH
T ss_pred EEEECCEEEECCEEEEEECCCCCCCEECCCEEEECCCCCHHHHHHCCCCHHHHHCCCCCCCCCCCCCEEEECCCCCHHHH
T ss_conf 88605435532321342004675231468332312431045554401320332103345644787317850368778999
Q ss_pred ---------------------------------------------------------C
Q ss_conf ---------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~l~gglrs~m~y~G~~~l~e~~~~~~~~~~~f~~~t~~~~~e~~~h~~~~~~~~~~ 378 (378)
T d1jr1a1 321 VPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHSLHSYEKRLF 378 (378)
T ss_dssp HHHHHHHHHHHHHHTTCSBHHHHHHHHHHSCSCEEECCHHHHHHHSCCSCSCCCCCCC
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCC
T ss_conf 9999999888652657573999975333577269998845301257875541012339
|
| >d1xqga_ e.1.1.1 (A:) Maspin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Maspin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28480.63 Aligned_cols=1 Identities=0% Similarity=-0.527 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~l~~a~~~Fa~~L~~~l~~~~~~~N~v~SP~si~~~L~~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~~ 80 (378)
T d1xqga_ 1 QGSMDALQLANSAFAVDLFKQLSEKEPLGNVLFSPIALSTSLSLAQVGAKGDTANEIGQVLHFENVKDVPFGFQTVTSDV 80 (378)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHSTTSCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHTTGGGCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 97678999999999999999987229798499888999999999998677589999999708998689999999999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~l~~~~~l~~~~~~~~~~~f~~~~~~~y~~~v~~~dF~~~~~~~~~~IN~wv~~~T~g~i~~~~~~~~~~~~t 160 (378)
T d1xqga_ 81 NKLSSFYSLKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLEETKGQINNSIKDLTDGHFENILADNSVNDQT 160 (378)
T ss_dssp HHHTTTSSEEEEEEEEEETTSCCCHHHHHHTTTTTTTCEEEECHHHHHHHHHHHHHHHHHHHTTTSCSCCSCTTSCCTTC
T ss_pred HCCCCCCEEEEEECHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 45467725887312022034532488998766323654686432440567789999999984158715456898989875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~l~na~~f~~~W~~~F~~~~T~~~~F~~~~~~~~~v~mm~~~~~~~~~~~~~l~~~vv~Lp~~~~~~sm~iilP~~~~ 240 (378)
T d1xqga_ 161 KILVVNAAYFVGKWMKKFSESETKESPFRVNKTDTKPVQMMNMEATFSMGNIDSINSKIIELPFQNKHLSMFILLPKDVE 240 (378)
T ss_dssp CEEEEEEEEEECCBSSCCCGGGCEEEEEESSSSCEEEEEEEEEEEEEEEEEEGGGTEEEEEEEBGGGSSEEEEEEESSCC
T ss_pred EEEEEEEEEEEEEECCCCCCCCCEECCEECCCCCEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCC
T ss_conf 17888875886002278755652215501289955764123101426422206777389995058995789999567665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~L~~l~~~l~~~~l~~~~~~~~~~~~~v~l~lPkF~i~~~~dl~~~L~~lGl~~~F~~~~adfs~is~~~~l~vs~ 320 (378)
T d1xqga_ 241 DESTGLEKIEKQLNSESLSQWTNPSTMANAKVKLSIPKFKVEKMIDPKASLENLGLKHIFSEDTSDFSGMSETKGVALSN 320 (378)
T ss_dssp SSSSSCHHHHHSCSHHHHHHHTCGGGCEEEEEEEEEECEEEEEEECTHHHHHHHTCCGGGCTTTCCCTTTCSCSSCCEEE
T ss_pred CCCCHHHHHHHHCCHHHHHHHHHHHHCEEEEEEEEEEEEEEEEEECHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 54433899998639889998743542534799998004899876255887775584000588877544577999923787
Q ss_pred ---------------------------------------------------------C
Q ss_conf ---------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 i~qk~~i~vdE~G~~a~~~t~~~~~~~~~~f~~drPFlf~I~d~~t~~~Lf~G~v~~P 378 (378)
T d1xqga_ 321 VIHKVSLEITEDGGDSIEVPGARILQHKDELNADHPFIYIIRHNKTRNIIFFGKFSSP 378 (378)
T ss_dssp EEEEEEEEECSCBCCCCCCTTTTTSSCCCCCBCCSCEEEEEEETTTTEEEEEEEECCC
T ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEECCC
T ss_conf 6889999990685521223244457999879814998999999999978999993499
|
| >d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]
Probab=100.00 E-value=0 Score=28475.44 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~i~~~f~W~~~~i~~~~~~yl~~lG~tai~l~P~~e~~~~~~~~~~~~Y~~~dY~id~~~Gt~~df~~L 80 (378)
T d1jaea2 1 EKDANFASGRNSIVHLFEWKWNDIADECERFLQPQGFGGVQISPPNEYLVADGRPWWERYQPVSYIINTRSGDESAFTDM 80 (378)
T ss_dssp CCCCCCCTTCEEEEEETTCCHHHHHHHHHHTTTTTTEEEEECCCCSCBBCCTTCCGGGGGSBCCSCSEETTEEHHHHHHH
T ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHH
T ss_conf 99998879970699702574999999999999980998899092620678899877565678632268889999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 V~~aH~~GI~VilDvV~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dln~~n 160 (378)
T d1jaea2 81 TRRCNDAGVRIYVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDFHSPCEVNNYQDADNVRNCELVGLRDLNQGS 160 (378)
T ss_dssp HHHHHHTTCEEEEEECCSBCCSSCEEBTTSCEEBTTTTBBTTTTBCGGGBCCCCBCCCTTCHHHHHHSBBTTBCBBCTTS
T ss_pred HHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99998567244564034421244677766555688744476788876556899886777875433100014567103389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 p~V~~~l~~~~~~w~e~gvDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~ 240 (378)
T d1jaea2 161 DYVRGVLIDYMNHMIDLGVAGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLGGEAISKNEYTGFG 240 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHTCCCCCGGGTCCTTCCCEEEEECCCCSSSSCCGGGTTTSS
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHCCCCCCCCCHHCCCCC
T ss_conf 99999999999999985778446531112578787777776543132112444555404532001553200110103665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~Fl~NHD~~R~~~~~~~~~~~~~~~~lA~af~lt~p~G~P 320 (378)
T d1jaea2 241 CVLEFQFGVSLGNAFQGGNQLKNLANWGPEWGLLEGLDAVVFVDNHDNQRTGGSQILTYKNPKPYKMAIAFMLAHPYGTT 320 (378)
T ss_dssp EEECHHHHHHHHHHHTTTSCGGGGGGCSGGGTCCCGGGEEECSCCTTHHHHSCTTCCCTTSHHHHHHHHHHHHHSCSSEE
T ss_pred HHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 00021332014554305762999999855440378540457624678777588763456898999999999998579887
Q ss_pred ---------------------------------------------------------C
Q ss_conf ---------------------------------------------------------5
Q 000920 1082 ---------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~iy~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~w~~~~r~~~i~~m~~frn~~~ 378 (378)
T d1jaea2 321 RIMSSFDFTDNDQGPPQDGSGNLISPGINDDNTCSNGYVCEHRWRQVYGMVGFRNAVE 378 (378)
T ss_dssp EEEECBCCSSTTCCCCBCTTSCBCCCEECTTSCEETTBCCGGGSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8982365577777898888987778875866787878889989999999999866479
|
| >d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R [TaxId: 56673]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Antarctic bacterium DS2-3R [TaxId: 56673]
Probab=100.00 E-value=0 Score=28407.58 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~GL~Gv~v~~s~IS~Idg~~G~L~YRG~~i~dLa~~~sfEEVa~LL~~G~lP~~~el~~f~~~l~~~~~lp~~~~ 80 (377)
T d1a59a_ 1 EPTIHKGLAGVTADVTAISKVNSDTNSLLYRGYPVQELAAKCSFEQVAYLLWNSELPNDSELKAFVNFERSHRKLDENVK 80 (377)
T ss_dssp CCCCCGGGTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTSCSCCHHHH
T ss_pred CCCCCCCCCCCEECEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99889888998466075727858998799958439998714999999999978989499999999999998337986799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~l~~~p~~~~pm~~l~~~~s~l~~~~~~~~~~~~~~~~~~~~~lia~~~~i~a~~~r~~~g~~~~~p~~~~~~~~~~~~ 160 (377)
T d1a59a_ 81 GAIDLLSTACHPMDVARTAVSVLGANHARAQDSSPEANLEKAMSLLATFPSVVAYDQRRRRGEELIEPREDLDYSANFLW 160 (377)
T ss_dssp HHHTTSCTTSCHHHHHHHHHHHHHHTCTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99997302002113445555320344532344657777777777888899888877763268887789876256999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~l~~~Lvl~aDHg~n~StfaaR~vaSt~~d~~~~~~a~~~al~Gp~hGga~~~~~~~l~~i~~~~~~ 240 (377)
T d1a59a_ 161 MTFGEEAAPEVVEAFNVSMILYAEHSFNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEEIGIRKDE 240 (377)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHSCCCSSC
T ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 62123320888877677876542477676236666664258514467787877603420111278999999998621566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPR~~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~k~l~pNvD~ 320 (377)
T d1a59a_ 241 SLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMIKHYDRPEMLGLYNGLEAAMEEAKQIKPNLDY 320 (377)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTBCCSSCSSCCTTHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHCCCBCTHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 50266777899999998667866466874445667406777767777665412206677899999999971799978176
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~l~~~lG~p~~~~~~lf~i~R~~G~~AH~~Eq~~~~~l~RP~~~Y~G~~~R~~p 377 (377)
T d1a59a_ 321 PAGPTYNLMGFDTEMFTPLFIAARITGWTAHIMEQVADNALIRPLSEYNGPEQRQVP 377 (377)
T ss_dssp HHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSCCCCCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCC
T ss_conf 999999996849667769999999999999999998579975746540389999897
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=100.00 E-value=0 Score=28406.81 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~p~~~l~~PGP~~v~~~Vl~am~~~~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~ 80 (377)
T d1vjoa_ 1 ISINDNQRLQLEPLEVPSRLLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTA 80 (377)
T ss_dssp CCCCCTTCCCCCSCCCCCCEECSSSCCCCCHHHHHHHSSCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHH
T ss_conf 96473003446799987266610899789999999757688897888999999999999999859999809998484899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~ 160 (377)
T d1vjoa_ 81 AMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQ 160 (377)
T ss_dssp HHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEEC
T ss_pred HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCEEEE
T ss_conf 99999984334344420242001344444454320311100135778743202456666057640345554202334630
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (377)
T d1vjoa_ 161 PLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDM 240 (377)
T ss_dssp CCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCH
T ss_pred CHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEECC
T ss_conf 50554334552264389960002333321012456505640212440589779974132667765203589974011001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~p~ 320 (377)
T d1vjoa_ 241 NLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPD 320 (377)
T ss_dssp HHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCT
T ss_pred CHHHHCCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCEEEEEECCC
T ss_conf 10110257653346530142022257777666533725787888887654566664168546068276097499998999
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 321 GVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp TCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 989999999998649999966862326998998267578999999999999999859
|
| >d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=28404.46 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~k~Ki~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (377)
T d1o6ca_ 1 KKLKVMTVFGTRPEAIKMAPLVLELKKYPEIDSYVTVTAQHRQMLDQVLDAFHIKPDFDLNIMKERQTLAEITSNALVRL 80 (377)
T ss_dssp CCEEEEEEECSHHHHHHHHHHHHHGGGCTTEEEEEEECCSCGGGTHHHHHHTTCCCSEECCCCCTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 98469999970585999999999997189998799993798899999985168777535443889988999999999850
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~kpD~v~v~GDr~e~la~a~aa~~~~Ipi~HiegG~~s~~~~~~~~de~~R~~iskls~~hf~~t~~~~~~L~~ 160 (377)
T d1o6ca_ 81 DELFKDIKPDIVLVHGDTTTTFAGSLAAFYHQIAVGHVEAGLRTGNKYSPFPEELNRQMTGAIADLHFAPTGQAKDNLLK 160 (377)
T ss_dssp HHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCCCCSCTTTTTTHHHHHHHHHHHCSEEEESSHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 56665336653676403454301566653114227999514565433234714554003565304886323466634433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~G~~~~~I~~vG~~~~D~i~~~~~~~~~~~~~~~~~~~~~ilvt~Hr~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 240 (377)
T d1o6ca_ 161 ENKKADSIFVTGNTAIDALNTTVRDGYSHPVLDQVGEDKMILLTAHRRENLGEPMENMFKAIRRIVGEFEDVQVVYPVHL 240 (377)
T ss_dssp TTCCGGGEEECCCHHHHHHHHHCCSSCCCSTTTTTTTSEEEEECC----------HHHHHHHHHHHHHCTTEEEEEC---
T ss_pred HCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 03445427523420678888777777753334430578449998323101466337899998752123355653234552
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~ni~~~~~l~~~~fl~llk~s~~vIgnSss~i~Ea~~lg~P~Inir~~tERqe~~~~g~nilv~~ 320 (377)
T d1o6ca_ 241 NPVVREAAHKHFGDSDRVHLIEPLEVIDFHNFAAKSHFILTDSGGVQEEAPSLGKPVLVLRDTTERPEGVEAGTLKLAGT 320 (377)
T ss_dssp -CHHHHHHHHC--CCSSEEECCCCCHHHHHHHHHHCSEEEEC--CHHHHGGGGTCCEEEECSCCC---CTTTTSSEEECS
T ss_pred CCCCCHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHEEECCCCHHHHHHHHHHCEEEEECCCCCCCCHHHCCEEEECCC
T ss_conf 11321122101345651475132136889999864225641640467766665414898078875822000680598789
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~I~~~i~~~l~~~~~~~~~~~~~npYGdG~as~rI~~~L~~~~~~~k~~~~~~~ 377 (377)
T d1o6ca_ 321 DEENIYQLAKQLLTDPDEYKKMSQASNPYGDGEASRRIVEELLFHYGYRKEQPDSFT 377 (377)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHCCCTTCCSCHHHHHHHHHHHHTTSCSCCCCCCC
T ss_pred CHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 999999999999749687763065889898982999999999985083336878999
|
| >d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Glycosyl Hydrolase Family 88 domain: Unsaturated glucuronyl hydrolase species: Bacillus sp. GL1 [TaxId: 84635]
Probab=100.00 E-value=0 Score=28403.85 Aligned_cols=1 Identities=0% Similarity=-0.261 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~g~~~~~~~~~Wt~Gf~~G~lwl~ye~Tgd~~~~~~a~~~~~~~~~~~~~ 80 (377)
T d2d5ja1 1 MWQQAIGDALGITARNLKKFGDRFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYEYTGDEQYREGAVRTVASFRERLDR 80 (377)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCEEEEESSSSSEEEESSCSSCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 94899999999999988855101797748998377408983376479999999999869999999999999999975224
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~hd~Gf~~~~s~~~~y~~Tgd~~y~~~a~~~a~~L~~r~~~~~g~~~~w~~~~~~~~~~~~~iD~lm~~~~l~~~ 160 (377)
T d2d5ja1 81 FENLDHHDIGFLYSLSAKAQWIVEKDESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDCLLNLPLLLWA 160 (377)
T ss_dssp TTTCSSSTHHHHHHTTHHHHHHHHCCHHHHHHHHHHHHHHHTTEETTTTEECCSSSTTCTTTTTEEEGGGGGGHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 45566347631257679999987299989999999999999831867785435787888777766055125429999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~tgd~~y~~~A~~h~~~~~~~l~r~d~s~~~~~~~~~~tG~~~~~~t~qG~~~~s~WsRGqaW~i~gl~~~~~~t~~~ 240 (377)
T d2d5ja1 161 GEQTGDPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNA 240 (377)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHCCH
T ss_conf 88509876999999999999998268899748898865899862578888788773167632199999999999983881
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~l~~a~~~a~~~l~~~~~dgi~~wd~~~p~~~~~~~DsSa~Ai~A~gll~L~~~~~~~~~~~~~Y~~~a~~i~~~l~~~ 320 (377)
T d2d5ja1 241 DLLETAKRMARHFLARVPEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAKTTVTALRDG 320 (377)
T ss_dssp HHHHHHHHHHHHHHTTCCTTSCCBSBTTSCCCTTSCBCHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999999999999738877885321566678999877326789999999999852577267999999999999999876
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~iygDYy~~Eal~r~~~~~~~~w~~~~~ 377 (377)
T d2d5ja1 321 YAERDDGEAEGFIRRGSYHVRGGISPDDYTIWGDYYYLEALLRLERGVTGYWYERGR 377 (377)
T ss_dssp TBCCCCSSCCCSBSCBCSBTTTTBSSSBCBHHHHHHHHHHHHHHHHCCCTTSSCTTC
T ss_pred HHCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 600689988844631635789999988673559999999999997388653745899
|
| >d2i71a1 e.72.1.1 (A:1-377) Hypothetical protein SSO1389 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: SSO1389-like superfamily: SSO1389-like family: Cas DxTHG domain: Hypothetical protein SSO1389 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=28401.56 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 m~~l~ia~wG~p~~w~~~~Y~~~~~~~~~~~s~~~l~~~~~~d~~vi~~~dSl~~~~~~~~~d~~~~~~~~~~~~~~~l~ 80 (377)
T d2i71a1 1 MASIVFSTIGNPKGYQKVTYEIDGEKFESNVSVLALRDLLKVDKTVVILGISVADVYNCKYADYRSCKECIIQNSKNDLG 80 (377)
T ss_dssp CEEEEEEEESCTTCCCCEEEEETTEEEEESSHHHHHHHHTTCSEEEEEEEGGGGGGGTCCCSCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCCEEEEEEECCCEEECCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 95499993478665728999978931204455999998747883999997301123468822799999999999998608
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~viv~P~vg~~f~g~~~~~~~~~~~~l~~~l~~~~~~eI~lD~thGiNy~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 160 (377)
T d2i71a1 81 ISESYVVAPNVYQKFKGKPDHYFTYIYYHSLRILEKEGINEVFIDTTHGINYMGVLAKEAIQLAVSAYAAKSEKEVKVSL 160 (377)
T ss_dssp CCSCEEEECCCBTTEESCTHHHHHHHHHHHHHHHHHHTEEEEEEEEEECCTTHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 88449992797628856888999999999999850389868999777870059999999999999999974578744999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~nsdP~~~~~~~~~~I~~i~~~~i~p~~~~~~i~~~fl~~~k~~~~~~~ke~~~~i~~~~~al~~gl~lyL~~~~~~~~l 240 (377)
T d2i71a1 161 YNSDPVGKDVSDTVKLHEIEAIKISPLSGLKYVTYQILNKDKNFFNKIFSDSVNAIPRFATALDNGLFIYLSEKDSSLHL 240 (377)
T ss_dssp EECCCTTCCTTSEEECEEEEEEEECHHHHHHHHHHHHHTSCTTTTTTSSTTHHHHHHHHHHHHHTTCHHHHHHSCCHHHH
T ss_pred EECCCCCCCCCCCEEEEEECCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHH
T ss_conf 94776568887746999840126221466554303566667777678888888899999986540429999874022327
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~y~~~~~~~~~~i~~~~~~~~l~~l~e~~~~~v~~~~i~~Ei~~i~~~~~~ 320 (377)
T d2i71a1 241 KRLEDDLSKDPLLTPSENEINVVYKDMKYALSHALFYVISRFSGNVDLDTLRHYAETYADKVTRAIIENEVDKIEKYQMG 320 (377)
T ss_dssp HHHHHHHHSCCEEEECSSCEEEECCCHHHHHHHHHHHHHGGGCSCEEHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88998630002330465312302330788999999998740230210899999998861356999999999988861477
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~k~~~~~~~~~d~RNF~AHaGLe~nvt~vk~~~~~i~v~y~e~~~~i~~~l 377 (377)
T d2i71a1 321 SERKLLGEYMKVEGKGFDKRILYAHGGLPYAGTYVYKEKDKVYVTYGDKIDEIERQI 377 (377)
T ss_dssp SSCEEGGGTC---------CHHHHTTTCCTTTCEEEEETTEEEEECGGGHHHHHHHC
T ss_pred CCHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEHHHHHHHHHHCC
T ss_conf 760478886310147885300100348652729999669889998787599998419
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=100.00 E-value=0 Score=28400.34 Aligned_cols=1 Identities=0% Similarity=0.338 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~y~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~~~~~~~~~~ 80 (377)
T d1k8qa_ 1 AFGKLHPTNPEVTMNISQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPN 80 (377)
T ss_dssp CCCBSSCCCGGGGCCHHHHHHHTTCCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHCCCC
T ss_conf 97667789987677889999984998558999817999898998468888876689989089989996314677442752
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~sla~~L~~~Gy~V~~~D~rG~G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~g~~~v~lvGhS~GG~ia~ 160 (377)
T d1k8qa_ 81 NSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTGQDKLHYVGHSQGTTIGF 160 (377)
T ss_dssp TCHHHHHHHTTCEEEECCCTTSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHHCCSCEEEEEETHHHHHHH
T ss_pred CHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf 06999999879989998089988888887778752220137799984341799999999972999879997332699999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (377)
T d1k8qa_ 161 IAFSTNPKLAKRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNAL 240 (377)
T ss_dssp HHHHHCHHHHTTEEEEEEESCCSCCSSCCSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99986323320004675214544444114678998750136666642000114046777765431022034667877655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~vPvL~i~ 320 (377)
T d1k8qa_ 241 FIICGFDTMNLNMSRLDVYLSHNPAGTSVQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWN 320 (377)
T ss_dssp HHHHCCCGGGSCGGGHHHHHTTCCCCEEHHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEE
T ss_pred HHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEE
T ss_conf 42037771114677766666315553359999999999753741220330345556651345751222754899989999
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 G~~D~~~~~~~~~~l~~~lp~~~~~~~i~~~GH~d~~~~~~a~~~v~~~I~~fl~~~ 377 (377)
T d1k8qa_ 321 GGNDLLADPHDVDLLLSKLPNLIYHRKIPPYNHLDFIWAMDAPQAVYNEIVSMMGTD 377 (377)
T ss_dssp ETTCSSSCHHHHHHHHTTCTTEEEEEEETTCCTTHHHHCTTHHHHTHHHHHHHHHTC
T ss_pred ECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 589972289999999997799759999699988303424454999999999997229
|
| >d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II, PAC) {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: V-region of surface antigen I/II (SA I/II, PAC) family: V-region of surface antigen I/II (SA I/II, PAC) domain: V-region of surface antigen I/II (SA I/II, PAC) species: Streptococcus mutans [TaxId: 1309]
Probab=100.00 E-value=0 Score=28399.71 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~kdla~Y~~~l~~Y~~e~~~y~~alae~ek~KnedGyl~~p~aQ~LvF~~Ep~A~~ti~~~gk~~~a~~~~~~~~~~~~~ 80 (377)
T d1jmma_ 1 QKDLADYPVKLKAYEDEQASIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTTDGKFLKASAVDDAFSKSTSK 80 (377)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTSBSSCCCBCEECSCCTTCEEEEEESSEEECHHHHHHHHHSGGGH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCCHHHHHHHHCCCCCH
T ss_conf 94077889999999999999999999998740556663640145414316787268885255311301112233044303
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~v~l~kg~~vtvTYtNL~nSsynGKKI 160 (377)
T d1jmma_ 81 AKYVQKILQLDDLDITNLEQSNDVASSMELYGNFGDKAGWSTTVSNNSQVKWGSVLLERGQSATATYTNLQNSYYNGKKI 160 (377)
T ss_dssp HHHHTTEECGGGCCGGGGCSGGGEESSCCEEETTSTTSSCEETTTBTSCCEEEEEEECTTCEEEEEEECCSSCEETTEEE
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCEE
T ss_conf 33101010223443224333322000002355555445501024567753025699617998999962754442178323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 sKvvytYtl~~s~s~~g~~i~~~l~~DPT~t~f~~~~~g~~~~~~~~~v~~~vkFYDe~G~~i~~~~Al~S~sSLN~~~~ 240 (377)
T d1jmma_ 161 SKIVYKYTVDPKSKFQGQKVWLGIFTDPTLGVFASAYTGQVEKNTSIFIKNEFTFYDEDGKPINFDNALLSVASLNREHN 240 (377)
T ss_dssp EEEEEEEEECTTCCCSSSCEEEEEESSGGGCEEEECCCSSCBSSCEEEEEEEEEEEETTSCBCCEEEEEEEECCCCBCSS
T ss_pred EEEEEEEEECCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEECCCCCEEEEECCCCCCC
T ss_conf 69999999555788888624689815995279998512666656643899999999789989226602687410258998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~iE~V~~~ng~fv~I~GSSV~~~~g~~ya~~~~~~~~~~~Gsr~~~~~~~~~~s~WD~~~s~~ayYGA~v~~~~g~~~~~ 320 (377)
T d1jmma_ 241 SIEMAKDYSGKFVKISGSSIGEKNGMIYATDTLNFKQGEGGSRWTMYKNSQAGSGWDSSDAPNSWYGAGAIKMSGPNNHV 320 (377)
T ss_dssp EEEEEESCSSEEECBTTCSEEEETTEEEECSSCCSSTTSTTCSSCSSCCSSTTCCCCSSSCTTGGGGCEEEEEEESCEEE
T ss_pred CEEEEECCCCEEEEECCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEE
T ss_conf 46899748971899579766865994772677432346676421223467766787778997631123778970895489
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 t~g~~~a~~~~~~~~~~~~~~~d~~~~~~~~iWfa~ns~i~a~~vp~~~~e~Pt~P~ 377 (377)
T d1jmma_ 321 TVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPV 377 (377)
T ss_dssp EEEEEEGGGTSCGGGSCCCTTCCTTCCBCSEEEECCBSCCCSSSCCBCCCCCCCCCC
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 970455432246644455666655567776231674378765458999987899989
|
| >d1ci9a_ e.3.1.1 (A:) Esterase EstB {Burkholderia gladioli [TaxId: 28095]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Esterase EstB species: Burkholderia gladioli [TaxId: 28095]
Probab=100.00 E-value=0 Score=28399.46 Aligned_cols=1 Identities=0% Similarity=0.039 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~a~l~~~id~~~~~~~~~~~~pG~~~~V~~~g~~v~~~~~G~ad~~~~~~~~~~t~f~iaSvtK~~ta~~v~~Lve~G~l 80 (377)
T d1ci9a_ 1 AASLAARLDAVFDQALRERRLVGAVAIVARHGEILYRRAQGLADREAGRPMREDTLFRLASVTKPIVALAVLRLVARGEL 80 (377)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCSEEEEEEEETTEEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCC
T ss_conf 94189999999999998289875999999999999998478624455988999986860326899999999999975996
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~ldd~v~~ylP~~~~~~~~~~~~~ITi~~Ll~htsGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (377)
T d1ci9a_ 81 ALDAPVTRWLPEFRPRLADGSEPLVTIHHLLTHTSGLGYWLLEGAGSVYDRLGISDGIDLRDFDLDENLRRLASAPLSFA 160 (377)
T ss_dssp CTTSBGGGTCTTCCCBCTTSCCCCCBHHHHHHTCSSCCCHHHHCTTSHHHHHTCCCSSSCCSSCHHHHHHHHHHSBCSSC
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCCEEHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 53322112331110134324577515013035532466633444113565540245665455899999999862888679
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 PG~~~~Ys~~~~lLg~iie~vtg~~~~~~~~e~i~~PLGm~~t~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (377)
T d1ci9a_ 161 PGSGWQYSLALDVLGAVVERATGQPLAAAVDALVAQPLGMRDCGFVSAEPERFAVPYHDGQPEPVRMRDGIEVPLPEGHG 240 (377)
T ss_dssp TTSCCCCCTHHHHHHHHHHHHHTSCHHHHHHHHTHHHHTCCSCBSCCSCGGGBCCCEECCSSSCEECCTTEEEECCTTSC
T ss_pred CCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99627607689999998763133203455467786213875343357826640000024677653134654345545666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~gGl~sta~Dlarf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~G~~~~~~~~~ 320 (377)
T d1ci9a_ 241 AAVRFAPSRVFEPGAYPSGGAGMYGSADDVLRALEAIRANPGFLPETLADAARRDQAGVGAETRGPGWGFGYLSAVLDDP 320 (377)
T ss_dssp SEEEECGGGGGCTTSCCCTTTCCEECHHHHHHHHHHHHHCSSSSCHHHHHHHHSCSSCGGGCTTSTTEEECSSSEEESCH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECEEEECCC
T ss_conf 54345763223645555677632235999999999765116787077876650102477766678971241011430376
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~g~~~h~G~~gt~~~idP~~~l~vv~ltN~~~~~~~~~~~~~l~~~vYa 377 (377)
T d1ci9a_ 321 AAAGTPQHAGTLQWGGVYGHSWFVDRALGLSVLLLTNTAYEGMSGPLTIALRDAVYA 377 (377)
T ss_dssp HHHTCSSCTTCEEEEETTTEEEEEEGGGTEEEEEEESEETHHHHSHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCEECCCCCCEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 535788999856626821418999944998999988489999875999999982189
|
| >d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: Choline/Carnitine O-acyltransferase domain: Carnitine acetyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28402.76 Aligned_cols=1 Identities=0% Similarity=-0.294 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~Q~sLP~LPvP~L~~Tl~ryL~s~kPl~s~ee~~~t~~~v~~F~~~~g~G~~Lq~~L~~~~~~~~nwl~~~W~~~~YL~ 80 (377)
T d1nm8a1 1 HHTDPLPRLPVPPLQQSLDHYLKALQPIVSEEEWAHTKQLVDEFQASGGVGERLQKGLERRARKTENWLSEWWLKTAYLQ 80 (377)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHSSSTTHHHHHHHHTTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 96567998999999999999999865149999999999999998736860799999999975147773468899886435
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~R~pl~~~~n~~~~~~~~~~~~~~~q~~rAA~l~~~~l~f~~~l~~~~l~~~~~~~~plcM~qy~~lF~t~RiP~~~~D~ 160 (377)
T d1nm8a1 81 YRQPVVIYSSPGVMLPKQDFVDLQGQLRFAAKLIEGVLDFKVMIDNETLPVEYLGGKPLCMNQYYQILSSCRVPGPKQDT 160 (377)
T ss_dssp CCSCSBTTTBCEEECCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCEETTEECCCGGGGGTTTEEEECCSSSCE
T ss_pred CCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCEEECHHHHHHHCCCEECCCCCCCC
T ss_conf 88785466766300267777760679999999999999999998728778656589944189998761765068999883
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 l~~~~~~~~~~~HIvV~~~g~~ykv~v~d~~g~~ls~~ei~~~l~~I~~~~~~~~~~~vg~LTt~~Rd~Wa~~r~~L~~~ 240 (377)
T d1nm8a1 161 VSNFSKTKKPPTHITVVHNYQFFELDVYHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKD 240 (377)
T ss_dssp EEECTTSSSCCCEEEEEETTEEEEEECBCTTSCBCCHHHHHHHHHHHHHTCCCCCSCCGGGGGGSCHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 20057778888769999899899999988999899899999999999961104688886405678728999999998608
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~N~~~L~~Iesalfvv~LDd~~p~~~~e~~~~~~~~~~lhG~g~~~~~~NRW~DKs~q~IV~~nG~~g~~~EHS~~DG~ 320 (377)
T d1nm8a1 241 KVNRDSVRSIQKSIFTVCLDATMPRVSEDVYRSHVAGQMLHGGGSRLNSGNRWFDKTLQFIVAEDGSCGLVYEHAAAEGP 320 (377)
T ss_dssp HHHHHHHHHHHHSSCEEEEECCCSCCCSTTHHHHHHHHHHHCSCTTTTTTSCCTTBSEEEEEETTSCEEEEECTTSCCHH
T ss_pred CHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCCCCHH
T ss_conf 60799999997547888833788888613666666555033687557987726665517999789877862267761289
Q ss_pred --------------------------------------------------------C
Q ss_conf --------------------------------------------------------5
Q 000920 1082 --------------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~v~~~~~~v~~~~~~~~~~~~~~~~~~~p~~L~f~l~~~i~~~I~~a~~~~~~li~D 377 (377)
T d1nm8a1 321 PIVTLLDYVIEYTKKPELVRSPMVPLPMPKKLRFNITPEIKSDIEKAKQNLSIMIQD 377 (377)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999987234666788778899975878976989999999999999998259
|
| >d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28327.61 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 MKi~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (376)
T d1f6da_ 1 MKVLTVFGTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLKP 80 (376)
T ss_dssp CEEEEEECSHHHHHHHHHHHHHHHHCTTCEEEEEECCTTGGGGHHHHHHTTCCCSEECCCCSSSSCHHHHHHHHHHHHHH
T ss_pred CEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 96999998267399999999999738998779999088989999999862878774400488999899999999986478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~kPD~v~v~GDr~e~la~a~aa~~~~ipi~HiegG~~s~~~~~~~pde~~R~~iskls~~hf~~~~~~~~~L~~~G 160 (376)
T d1f6da_ 81 ILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLREN 160 (376)
T ss_dssp HHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSCTTSSTTHHHHHHHHHHTCSEEEESSHHHHHHHHHTT
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHCC
T ss_conf 89745676224310344313689998740753899852446542000474066554203200488743478886877518
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~I~~vG~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvt~H~~~~~~~~~~~i~~~l~~~~~~~~~~~ 240 (376)
T d1f6da_ 161 VADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQ 240 (376)
T ss_dssp CCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEECCCCBSSCCHHHHHHHHHHHHHHHHCTTEE
T ss_pred CCCCCCCEECCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 98653412167248788887765423512321111022334777766998335411112009999999865434214047
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ii~p~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~~fl~ll~~a~~vignSssgi~Ea~~lg~P~Inir~~ter~~~~~~g 320 (376)
T d1f6da_ 241 IVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVTAG 320 (376)
T ss_dssp EEEECCBCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHCSEEEESSSGGGGTGGGGTCCEEECSSCCSCHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCEEEEECCCCHHHHHHHHCCCEEECCCCCCCCCCEECC
T ss_conf 85254432124446766640444513323556789999984163998368506766787489889727876576412368
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~i~v~~~~~~I~~ai~~~l~~~~~~~~~~~~~npYGdG~as~rI~~iLk~~~i~~ 376 (376)
T d1f6da_ 321 TVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALKNNRISL 376 (376)
T ss_dssp SEEECCSSHHHHHHHHHHHHHCHHHHHHHHHSCCTTCCSCHHHHHHHHHHHTCCCC
T ss_pred EEEECCCCHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 06987899999999999997285766530457898989849999999998568999
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=100.00 E-value=0 Score=28327.48 Aligned_cols=1 Identities=0% Similarity=0.636 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~i~~F~le~G~~l~~~~laY~t~G~ln~~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfV 80 (376)
T d2vata1 1 NRFEASLDAQDIARISLFTLESGVILRDVPVAYKSWGRMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFI 80 (376)
T ss_dssp CHHHHTSCCCEEEEEEEEECTTSCEEEEEEEEEEEESCCCTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEE
T ss_pred CCHHHCCCCCCEEEECCEEECCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCEEE
T ss_conf 93220345475375376782799885895699996256488899889984887677021234887077998637463389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 I~~n~lG~~~gst~p~s~~p~~~~~~~yg~~FP~~ti~D~v~aq~~ll~~LGI~~l~aViG~SmGGmqal~wa~~~Pd~v 160 (376)
T d2vata1 81 ICLNYLGSPFGSAGPCSPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDRLGVRQIAAVVGASMGGMHTLEWAFFGPEYV 160 (376)
T ss_dssp EEECCTTCSSSSSSTTSBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHHHTCCCEEEEEEETHHHHHHHHHGGGCTTTB
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCHHHH
T ss_conf 98346788767888877896212377545568852057889999999987386617886134278899999998361777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~li~Ia~~~~~s~~~~a~~~~~~~ai~~Dp~w~~G~Y~~~~~p~~GL~~Ar~~~~~ty~S~~~~~~rf~~~~~~~~gr~ 240 (376)
T d2vata1 161 RKIVPIATSCRQSGWCAAWFETQRQCIYDDPKYLDGEYDVDDQPVRGLETARKIANLTYKSKPAMDERFHMAPGVQAGRN 240 (376)
T ss_dssp CCEEEESCCSBCCHHHHHHHHHHHHHHHHSTTSGGGTCCTTSCCHHHHHHHHHHHHHHTSCHHHHHHHSCCCCCCC----
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC
T ss_conf 52312356523455778888999987422212457775433116789999999999984599999999723224422200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vesyL~~~g~k~~~rfDansyl~l~~a~d~~Di~~~~~g~l~~aL~~I~a~~L 320 (376)
T d2vata1 241 ISSQDAKKEINGTDSGNSHRAGQPIEAVSSYLRYQAQKFAASFDANCYIAMTLKFDTHDISRGRAGSIPEALAMITQPAL 320 (376)
T ss_dssp -----------------------CGGGHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTCBTTTTTCSSHHHHHTTCCSCEE
T ss_pred CCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEE
T ss_conf 01000111013444332222343156799999987765530555012899999998503333338899999850899989
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 vI~~~sD~lFPp~~~~e~a~~l~~a~~~~I~S~~GHDaFL~e~~~~~~~I~~FL~q 376 (376)
T d2vata1 321 IICARSDGLYSFDEHVEMGRSIPNSRLCVVDTNEGHDFFVMEADKVNDAVRGFLDQ 376 (376)
T ss_dssp EEECTTCSSSCHHHHHHHHHHSTTEEEEECCCSCGGGHHHHTHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99868420849999999998627874999899988652266999999999999748
|
| >d1k9oi_ e.1.1.1 (I:) Alaserpin (serpin 1) {Tobacco hornworm (Manduca sexta) [TaxId: 7130]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Alaserpin (serpin 1) species: Tobacco hornworm (Manduca sexta) [TaxId: 7130]
Probab=100.00 E-value=0 Score=28327.45 Aligned_cols=1 Identities=100% Similarity=1.998 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 g~~~~~~~l~~~~~~F~~~l~~~~~~~~~~~N~v~SP~si~~~La~l~~ga~g~T~~el~~~L~~~~~~~~~~~~~~l~~ 80 (376)
T d1k9oi_ 1 GETDLQKILRESNDQFTAQMFSEVVKANPGQNVVLSAFSVLPPLGQLALASVGESHDELLRALALPNDNVTKDVFADLNR 80 (376)
T ss_dssp CTHHHHTTHHHHHHHHHHHHHHHHHTTSTTSCEEECSGGGHHHHHHHTTTBCTHHHHHHHHHTTCSCTTHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 98558999999999999999999983298981998889999999999986673899999997099985457999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~~~~~~~~f~~~~~~~y~~~~~~vdf~~~~~a~~~IN~wv~~~T~g~I~~~~~~~~l~~~~ 160 (376)
T d1k9oi_ 81 GVRAVKGVDLKMASKIYVAKGLELNDDFAAVSRDVFGSEVQNVDFVKSVEAAGAINKWVEDQTNNRIKNLVDPDALDETT 160 (376)
T ss_dssp SCSCCSSBCCEEEEEEEEESSCCBCSGGGSTTTSSSCCCEEEECTTSHHHHHHHHHHHHHHHTTTSSCCCSCGGGCCTTC
T ss_pred HHHHCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCH
T ss_conf 87536798578854002304887166899998752286554245555699999999999986378221006877899501
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~lvna~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~v~~m~~~~~~~~~~~~~l~~~vveLP~~~~~~sm~iilP~~~~ 240 (376)
T d1k9oi_ 161 RSVLVNAIYFKGSWKDKFVKERTMDRDFHVSKDKTIKVPTMIGKKDVRYADVPELDAKMIEMSYEGDQASMIIILPNQVD 240 (376)
T ss_dssp CEEEEEEEEEEBCBSSCCCGGGCEEEEECSSSSCCEEEEEEEEEEEEEEEEETTTTEEEEEEEBGGGSEEEEEEEESSTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCC
T ss_conf 45665515655422278883233513053279926999723421417887507798799996237993699999668776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~l~~~~~~l~~~~~~~~~~~~~~~~~v~v~lPkF~i~~~~~l~~~L~~lGl~~~F~~~~ad~s~~~~~~~~l~vs~v~q~ 320 (376)
T d1k9oi_ 241 GITALEQKLKDPKALSRAEERLYNTEVEITLPKFKIETTTDLKEVLSNMNIKKLFTPGAARLENLLKTKESLTVDAAIQK 320 (376)
T ss_dssp THHHHHHHTTSTTTTTTTTTSCEEEEEEEEEECEEEEEEEEHHHHHHTTTCCSTTSTTTSCBTTTBSSCCCCCCSEEEEE
T ss_pred CHHHHHHHHCCHHHHHHHHHHCCCEEEEEEEEEEEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 63578864225346899875151228999843589752212788765438754357652312356588998788736877
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~ievdE~G~~a~a~t~~~~~~~~~~~~~~f~~drPF~f~I~~~~~~lf~G~v~~P 376 (376)
T d1k9oi_ 321 AFIEVNEEGAEAAAANAFGIVPKSLILYPEVHIDRPFYFELKIDGIPMFNGKVIEP 376 (376)
T ss_dssp EEEEECSCBSSCSSSCCSSSEESCCCCCCEEECCSCEEEEEEESSSEEEEEEESCC
T ss_pred EEEEECCCCEEEECCCCEEEECCCCCCCCEEEEECCEEEEEEECCEEEEEEEECCC
T ss_conf 89999987116001432344116788897599648979999979969999994288
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=28326.26 Aligned_cols=1 Identities=0% Similarity=-0.326 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~ip~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~ 80 (376)
T d1mdoa_ 1 DFLPFSRPAMGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMT 80 (376)
T ss_dssp CCBCSCCCCCCHHHHHHHHHHHHHTCCSSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 98668999999999999999996699768977999999999998819599968889999999998089998989872343
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~ 160 (376)
T d1mdoa_ 81 WVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTS 160 (376)
T ss_dssp CHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCE
T ss_pred CCCCCCCHHCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCHHCCCE
T ss_conf 42110001103431244114433347899999975478981999867888715333899988741946996464310674
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~ 240 (376)
T d1mdoa_ 161 YKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLN 240 (376)
T ss_dssp ETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHH
T ss_pred ECCEECCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHH
T ss_conf 68820466657664278867787788888997125679998764036876443332233323311000012353440145
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~gI~~~~ 320 (376)
T d1mdoa_ 241 AAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGL 320 (376)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 66655433333579999866534554311465433221234444544332222220002133399999999987998465
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~~ 376 (376)
T d1mdoa_ 321 HFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAG 376 (376)
T ss_dssp CCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred ECCCHHCCHHHHHHCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 78532308998952887898799999859798448999999999999999999729
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=28325.21 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~ 80 (376)
T d1eg5a_ 1 MRVYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKT 80 (376)
T ss_dssp CCEECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHC
T ss_conf 97988786316699999999999998748987654699999999999999999998098978099979878997766621
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~ 160 (376)
T d1eg5a_ 81 VAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVED 160 (376)
T ss_dssp HHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEECHHHHHHHCCCCCEEEEEECCCCCCCEEEEEHH
T ss_conf 44332235763223432220128999999866988999768988727789999864899608999777665412554124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G~~~l~~~~~~~~~p~~~g~~~~~~~~~~~~~ 240 (376)
T d1eg5a_ 161 VTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIRPLIHGGGQERGLRSGTQN 240 (376)
T ss_dssp HHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTSCCCCSBCSSCTTTTTBCSCCC
T ss_pred HHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCEECCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 44554311467504787531246545520004865000125434357886268852576658720189875445477664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr~ 320 (376)
T d1eg5a_ 241 VPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVST 320 (376)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCEEEEC
T ss_conf 02456677775402210246666666543200012331011123433211256023225997999999988559908967
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~~l 376 (376)
T d1eg5a_ 321 SSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFL 376 (376)
T ss_dssp ------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHCCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 61103886206699997399834479889996589899999999999999999639
|
| >d1wu4a1 a.102.1.2 (A:6-381) Xylanase Y {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: Xylanase Y species: Bacillus halodurans [TaxId: 86665]
Probab=100.00 E-value=0 Score=28323.76 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~g~~~~~~y~n~~~~~g~~q~~~~~k~~~~~~~~f~~~~~~~~y~~~~~~~~yv~d~~n~dv~SEGqgYGMl~Av~~~dr 80 (376)
T d1wu4a1 1 EGAFYTREYRNLFKEFGYSEAEIQERVKDTWEQLFGDNPETKIYYEVGDDLGYLLDTGNLDVRTEGMSYGMMMAVQMDRK 80 (376)
T ss_dssp CCHHHHCCCCCHHHHTTCCHHHHHHHHHHHHHHHHSSCC--CCEEEETTTEEEECBTTTTBEEHHHHHHHHHHHHHTTCH
T ss_pred CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCH
T ss_conf 99764675552888828899999999999999981689766189971798558766799985556799999999980999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~FD~lw~wt~~~l~~~d~~~~~L~aW~~~~~g~v~d~n~AtDgDl~iA~ALl~A~~~Wg~~~~~~~~Y~~~A~~il~~i 160 (376)
T d1wu4a1 81 DIFDRIWNWTMKNMYMTEGVHAGYFAWSCQPDGTKNSWGPAPDGEEYFALALFFASHRWGDGDEQPFNYSEQARKLLHTC 160 (376)
T ss_dssp HHHHHHHHHHHHHTBCCSSTTTTSBCSEECTTSCBSCSCCCHHHHHHHHHHHHHHHHHHCCCSSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999985367777666715336799997889988767999999999999874887533356999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~nPSY~~P~~~~~fa~~a~~~~~~~W~~~~~~s~~ll~~~~~~~tGL~PDw~ 240 (376)
T d1wu4a1 161 VHNGEGGPGHPMWNRDNKLIKFIPEVEFSDPSYHLPHFYELFSLWANEEDRVFWKEAAEASREYLKIACHPETGLAPEYA 240 (376)
T ss_dssp HHTTSSSSCCCSBCTTTCCBCSSTTCSEECGGGCCHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHSCTTTCCCCSSE
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 98546788865103674455558887502801037899999998613477457999999999999971147879998425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~dg~~~~~~~~~~~~yDA~Rvpl~ia~d~~w~g~~~~~~~~~~~~~~f~~~~~~~~~~~y~~dG~~~~~~~~~~~g~~a 320 (376)
T d1wu4a1 241 YYDGTPNDEKGYGHFFSDSYRVAANIGLDAEWFGGSEWSAEEINKIQAFFADKEPEDYRRYKIDGEPFEEKSLHPVGLIA 320 (376)
T ss_dssp ETTSSBCCTTSCSSBSGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCCGGGCEEECTTSCEEEEECSCHHHHHH
T ss_pred EECCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHH
T ss_conf 35895378778997750199999999977512575356799999999998634666688553368414677888679999
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~a~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~YY~~~L~Llall~lsG~~r~~~p 376 (376)
T d1wu4a1 321 TNAMGSLASVDGPYAKANVDLFWNTPVRTGNRRYYDNCLYLFAMLALSGNFKIWFP 376 (376)
T ss_dssp HHHHGGGGCTTCTTHHHHHHHHHTSCCCCSTTHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99999997279716899999987234788888878999999999998298444179
|
| >d2v3qa1 c.94.1.1 (A:1-376) PstS-like phosphate-binding protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: PstS-like phosphate-binding protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28323.00 Aligned_cols=1 Identities=0% Similarity=0.537 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~i~gaGat~p~p~~~~~~~~~~~~~~y~~~GSG~G~~~~~~g~~~~~~~~~~~tvdfa~sd~~l~~~E~~~~~~~~~~~~ 80 (376)
T d2v3qa1 1 DINGGGATLPQKLYLTPDVLTAGFAPYIGVGSGKGKIAFLENKYNQFGTDTTKNVHWAGSDSKLTATELATYAADKEPGW 80 (376)
T ss_dssp CBCEEECSTTHHHHTSTTTSCTTBCCCEECCHHHHHHHHHHTCGGGTCSCTTSCCCEEEESSCCCHHHHHHHHHHTHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 93215222799999998763596789956576899999963886444556546771353477789999988774066777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~v~iPv~~~~Iai~~N~~~~~~l~Lt~~~L~~If~G~It~Wnd~~i~~p~~~I~vv~R~d~SGTt~~Ft~~L~~~~~~ 160 (376)
T d2v3qa1 81 GKLIQVPSVATSVAIPFRKAGANAVDLSVKELCGVFSGRIADWSGITGAGRSGPIQVVYRAESSGTTELFTRFLNAKCTT 160 (376)
T ss_dssp CCEEEEEEEEEECBCBBCCCCSSCCEECHHHHHHHHHTSCCBGGGSTTSCCCSBCEEEEESSCCHHHHHHHHHHHHHCCS
T ss_pred CCEEEEEEEEEEEEEEEECCCCHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 86289747764479987347625543479999843337623001135457677854784489986078889988652755
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~g~~~~~~~~~~~~~~~~~~~~~a~gs~gv~~~v~~~~~~~gaIGY~~~~ya~~~~~~l~~~~~~~~~~~~~~~~~ 240 (376)
T d2v3qa1 161 EPGTFAVTTTFANSYSLGLTPLAGAVAATGSDGVMAALNDTTVAEGRITYISPDFAAPTLAGLDDATKVARVGKGVVNGV 240 (376)
T ss_dssp SSSCBCCCSCGGGTBTTCSTTSTTCEEESHHHHHHHHHHCTTSCSCEECCBCHHHHSSSGGGGGCTTTBCEECCEEETTE
T ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCEEECC
T ss_conf 32234643102332245677677650003573087887540477765444430100022222103332024453000035
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~v~pt~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YPI~~~~y~~~~~~~~~~~~~~~vk~Fl 320 (376)
T d2v3qa1 241 AVEGKSPAAANVSAAISVVPLPAAADRGNPDVWVPVFGATTGGGVVAYPDSGYPILGFTNLIFSQCYANATQTGQVRDFF 320 (376)
T ss_dssp EECCBCCCTHHHHHHHHTCCCCCGGGTTCGGGGSCEEESSCBTTEEECCSSSCSCEEEEEEEEESCBSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHEEEECCCCCCHHHHHHHHHH
T ss_conf 66621245888997651144554344566532223334322001357888851112111100002368700159999999
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~l~~~~~gq~~~~~~GyvPLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (376)
T d2v3qa1 321 TKHYGTSANNDAAIEANAFVPLPSNWKAAVRASFLTASNALSIGNTNVCNGKGRPQ 376 (376)
T ss_dssp HHHTCSSSSSHHHHHHTTCBCCCHHHHHHHHHHHTSTTSTTSTTCHHHHTTCCBCC
T ss_pred HHHHHCCCCHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 99860553257889978974399999999999986225420227864367788999
|
| >d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Galacturonase domain: Polygalacturonase species: Erwinia carotovora, subsp. carotovora [TaxId: 554]
Probab=100.00 E-value=0 Score=28321.25 Aligned_cols=1 Identities=100% Similarity=1.201 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~T~aIq~AIdac~~Gg~V~iP~G~~~vyltg~i~LkSnv~L~l~~ga~L~~s~d~~ 80 (376)
T d1bhea_ 1 SDSRTVSEPKTPSSCTTLKADSSTATSTIQKALNNCDQGKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRAVNNAK 80 (376)
T ss_dssp CCSSCCCCCCCCCEEEEEECCSSBCHHHHHHHHTTCCTTCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEECSCSG
T ss_pred CCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEECEEECCCCEEEEECCEEEEECCCHH
T ss_conf 98654578989975686789997369999999987779999999699745699804897888789991997999738979
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~i~~~~~~Ni~ItG~G~IDG~G~~~~~~~~~~~~~~~~~~~~~~~~~~rP~~i~~~~~~ 160 (376)
T d1bhea_ 81 SFENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSK 160 (376)
T ss_dssp GGBSSTTCSSCEESCSCCBCCSEEEESCBSCEEECSSEEECCTTSCCSSSSSCTTHHHHHHHHHTCEECCCCSEEEESCE
T ss_pred HCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCEEECCCCEEECCCCCCHHCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 96566630236751576541268824863079972768813344162277641000123444466777897699999115
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 nv~i~~iti~ns~~~~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~~s~nv~I~n~~i~~gDD~i~~ks~~~~~~~~ni 240 (376)
T d1bhea_ 161 NFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNI 240 (376)
T ss_dssp EEEEEEEEEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEECSSCSEEEEECTTSCCEEEE
T ss_pred CEEEEEEEEECCCCEEEEEECCCEEEEEEEECCCCCCCCCCCEEECCCCCEEEEEECEEECCCCCEEEECCCCCCCCCEE
T ss_conf 68997039955993699996885599996750588657776340025645099982533048981566046677774459
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~i~n~~~~~~~g~~iGs~~~~v~nv~i~n~~~~~~~~g~~Iks~~~~gG~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~ 320 (376)
T d1bhea_ 241 SILHNDFGTGHGMSIGSETMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGS 320 (376)
T ss_dssp EEEEEEECSSSCEEEEEEESSEEEEEEEEEEEESCSEEEEEECCTTTCCEEEEEEEEEEEEESCSEEEEEETTSSCCCCC
T ss_pred EEEEEEEECCCCCEECCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 99963896688730645668778899993258688704789825887607989999968993667448998144788888
Q ss_pred -------------------------------------------------------C
Q ss_conf -------------------------------------------------------5
Q 000920 1082 -------------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~i~nIt~~Ni~~~~~~~~~l~g~~~~~~~~v~~~nv~i~~~~~~~~~nv~~k~ 376 (376)
T d1bhea_ 321 NVPDWSDITFKDVTSETKGVVVLNGENAKKPIEVTMKNVKLTSDSTWQIKNVNVKK 376 (376)
T ss_dssp CCCEEEEEEEEEEEECSCCEEEEECTTCSSCEEEEEEEEECCTTCEEEEESEEEEC
T ss_pred CCCEEEEEEEEEEEEECCEEEEEECCCCCCCEEEEEEEEEEECCCCCEEEEEEECC
T ss_conf 79779518999079935325999868888823699984899759888788055329
|
| >d2fug41 e.18.1.2 (4:35-409) NADH-quinone oxidoreductase chain 4, Nqo4 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: HydB/Nqo4-like superfamily: HydB/Nqo4-like family: Nqo4-like domain: NADH-quinone oxidoreductase chain 4, Nqo4 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=28253.91 Aligned_cols=1 Identities=0% Similarity=0.370 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 p~~hG~~r~~~~v~ge~V~~a~~~ig~~~RGfEk~l~Gr~~~da~~i~~RICGIC~~aH~~A~~~AlE~a~gv~~p~~a~ 80 (375)
T d2fug41 1 PSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAE 80 (375)
T ss_dssp CEEECSSSCEEEECCSSSCCEEEECCTTCCCHHHHGGGSCHHHHHHHGGGTTSSSHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCCEEEEEEEECCCEEEEEEEEECCCCHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99885289999976988999898306652689998749996882212063111038799999999999991998899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~lR~l~~~~e~i~sH~l~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~G~~~h~~~~~~gG~~~~~~~~~~~~~~~~~ 160 (375)
T d2fug41 81 TIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTSSSSSCCCEETTEESSCCCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCEECCCEEECCCHHHHHHHHHHH
T ss_conf 99999999988767999999834520024388899999899999999846865520521202302279867889999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 240 (375)
T d2fug41 161 EVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSGYETYTFDVPLGERGDVFD 240 (375)
T ss_dssp TTTTTTTHHHHHHHSSCSCCTTSCSCCCCSSSCSTTTTTTCCSSCCSSCCTTTTTCCSSCCCC-----CCCCCCSSSSHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76088778898740367500002577533451023315765554555642133120067554556565534424776432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~g~vEApRG~L~ 320 (375)
T d2fug41 241 RMLVRIREMRESVKIIKQALERLEPGPVRDPNPQITPPPRHLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESARGELG 320 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCSCCBCCCTTTSCCCTTCTTTCTTHHHHHHHHHHSCCCCCSCCCCCCBCCSSSCBC
T ss_pred CCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCEEEE
T ss_conf 10213444421468999899748898744344110335699997554541013444566776899579999974886799
Q ss_pred ------------------------------------------------------C
Q ss_conf ------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 H~~~~d~~g~i~~~~ii~PT~~N~~~~e~al~G~~i~D~~~iirSfDpC~sC~dr 375 (375)
T d2fug41 321 YYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 375 (375)
T ss_dssp EEEECCSSSSCSEEEECCSHHHHTTTHHHHTTTSCGGGTTHHHHTTCCCHHHHHC
T ss_pred EEEEECCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999989981899999898877999999996799167899998567976447898
|
| >d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Pyruvate phosphate dikinase, N-terminal domain domain: Pyruvate phosphate dikinase, N-terminal domain species: Clostridium symbiosum [TaxId: 1512]
Probab=100.00 E-value=0 Score=28253.46 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~k~v~~f~e~~~~d~~lvGGK~AnLgel~~~G~pVP~GFviTt~Ay~~Fl~~n~~~~~~l~~~i~~~l~~l~~~~~~~~~ 80 (375)
T d1kbla3 1 AKWVYKFEEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQITQEIQDQIFEAITWLEELNGKKFG 80 (375)
T ss_dssp CCCEEEGGGCCGGGHHHHHHHHHHHHHHHHTTCCCCCEEEECHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTSCBT
T ss_pred CCEEEECCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 97789887799023643828899899999783998998885099999999826657487999999999866643275446
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (375)
T d1kbla3 81 DTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEGFAKKTGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKE 160 (375)
T ss_dssp CSSSCBCEEEEEECSSCCTTSSCEEEEETCCTTHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 54320121010013432100014676630350456667651343233211310255542000011015678888876653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~q~~~~~~a~gv~~t~~~~~~~~~~~~i~~~~glg~~vv~ 240 (375)
T d1kbla3 161 EKGVHFDTDLTADDLKELAEKFKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVNVQT 240 (375)
T ss_dssp HTCCCSGGGCCHHHHHHHHHHHHHHHHTTTTTCCCCCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCCGGGCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEECCCCCCCCCEEEC
T ss_conf 04337777767888999999999999875148865553024445530146773146655554420341466666630102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~eLa~~a~~iE~~yG~PqD 320 (375)
T d1kbla3 241 MVFGNKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLENDMPDCYKQFMDLAMKLEKHFRDMQD 320 (375)
T ss_dssp CCCTTSSTTCEEEEEEEECTTTCCEEEEEEEEESCCHHHHHHTSSCCEEGGGHHHHCHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEECCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 21057774226641245675444321122000013466642431226654431321808999999999999998199614
Q ss_pred ------------------------------------------------------C
Q ss_conf ------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------~ 1082 (1223)
.
T Consensus 321 IEWAi~dG~l~ILQaRPv~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T d1kbla3 321 MEFTIEEGKLYFLQTRNGKRTAPAALQIACDLVDEGMITEEEAVVRIEAKSLDQL 375 (375)
T ss_dssp EEEEEETTEEEEEEEEECCCCHHHHHHHHHHHHHTTSSCHHHHHHHSCGGGGGGG
T ss_pred EEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCC
T ss_conf 6999999989999766788657869999999998699799999872794211229
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=28251.78 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~i~EG~~~i~vp~~~~~~~~~vFYNp~q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~ 80 (375)
T d2dula1 1 LIEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISED 80 (375)
T ss_dssp CEEEEETTEEEEEC--------CCCCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHH
T ss_pred CEEEEECCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCHH
T ss_conf 94899586899941787778788242877764107999999973998799868774099999998589978998259989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~v 160 (375)
T d2dula1 81 AYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGV 160 (375)
T ss_dssp HHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999986375432211243323554336741004556567515767744578888817999999997044877999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 TaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~glRill~~i~r~Aa~~~~~i~PllS~~~~~y~Rv~vrv~~~~~~~~~ 240 (375)
T d2dula1 161 TATDGAPLCGAHPRACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGIDVILAYYKDHYFRAFVKLKDGARKGDE 240 (375)
T ss_dssp EECCHHHHTTSSHHHHHHHHSSBCCCSTTHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEETTEEEEEEEEEESHHHHHH
T ss_pred EECCCHHHCCCCCHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEECCHHHHHH
T ss_conf 93686120479917899972876137866501889999999999987429805999999824607999999137677887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~g~~~~C~~c~~~~~~~~~~~~~~~~~GPlW~G~L~d~efl~~~~~~~~~~~~~~~~~~~~ll~~i~eE~~~P~~y 320 (375)
T d2dula1 241 TLEKLGYIYFDDKTGKFELEQGFLPTRPNAYGPVWLGPLKDEKIVSKMVKEAESLSLARKKQALKLLKMIDQELDIPLFY 320 (375)
T ss_dssp HHTTEEEEEECTTTCCEEEEESSSCCSSSCEEEEECSCSBCHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHSCCSSCCE
T ss_pred HHHHCCCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 88744817871898877775588999787867883673369999999998754057540569999999998614998298
Q ss_pred ------------------------------------------------------C
Q ss_conf ------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~l~~la~~lk~~~P~~~~~~~aL~~~Gy~asrtH~~p~~iKTdAp~~~i~~i~r~ 375 (375)
T d2dula1 321 DTHAIGRRLKIETKKVEEIISALREQGYEATRTHFSPTGIKTSAPYEVFIETIKR 375 (375)
T ss_dssp EHHHHHHHHTCCBCCHHHHHHHHHHTTCCEEEETTEEEEEEESSCHHHHHHHHBC
T ss_pred CHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCEECCCCHHHHHHHHHC
T ss_conf 5799998739999999999999997898899657899977137999999999709
|
| >d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Bacteriophage RB69 [TaxId: 12353]
Probab=100.00 E-value=0 Score=28251.80 Aligned_cols=1 Identities=0% Similarity=-0.759 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 m~~fyt~v~~~gn~i~~rg~d~nG~r~~~~~~f~Py~Yv~~~~~~~t~~ksl~G~~v~~v~f~s~~e~r~~~k~~~~~~~ 80 (375)
T d1ih7a1 1 MKEFYLTVEQIGDSIFERYIDSNGRERTREVEYKPSLFAHCPESQATKYFDIYGKPCTRKLFANMRDASQWIKRMEDIGL 80 (375)
T ss_dssp CCCEEEEEEEETTEEEEEEECTTSCEEEEEECCCCEEEEECCTTSCCSCEETTSCBEEEEECSSHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCEEEECCEEEEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 98644022799999999999679989999954730699988999864534148817666746988999999997155543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~v~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~DIE~~~~~~~p~~~~~~~~i~~I~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
T d1ih7a1 81 EALGMDDFKLAYLSDTYNYEIKYDHTKIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVE 160 (375)
T ss_dssp CCBSCCCHHHHHHHHHTCSCCCCCGGGSCEEEEEEEECCSSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCTTCCCC
T ss_pred EECCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCC
T ss_conf 11256641201012357654566754220455788970576656864232100011246615880999996377756654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~sE~eLL~~F~~~~~~~dPDiitGwN~~~FD~pYL~~R~~~~~~~~~~~ 240 (375)
T d1ih7a1 161 EWSIEIAAKLQEQGGDEVPSEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFDIPYVYNRIKNIFGESTAK 240 (375)
T ss_dssp CCCHHHHHSCTTTTCCCCCHHHHTTEEEEEESSHHHHHHHHHHHHHHSCCSEEEETTTTTTHHHHHHHHHHHHHCHHHHG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCHHHHH
T ss_conf 32212233311124555655567985999829999999999999876498899871777887099999998640100233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~D~~~~~~~~~~~~~~s~~l~~v~~~~l~~~K~~~~~~~~~~~~~d~~~~ 320 (375)
T d1ih7a1 241 RLSPHRKTRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRY 320 (375)
T ss_dssp GGSTTSCEEEEEEECSSCEEEEEEETTCEEEEHHHHHHHHSSCCCSCCSHHHHHHHHTCCCCCCCSSCGGGHHHHHHHHH
T ss_pred HHHHCCCCCEEEEEEECCCCCEECCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCHHHH
T ss_conf 44423785079998512554011035640002899998753023210005678888751466557555999987494686
Q ss_pred ------------------------------------------------------C
Q ss_conf ------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~Y~~~D~~L~~~L~~kl~~i~~~~~~a~~~~v~~~~v~~q~~~~~~li~~~~~~ 375 (375)
T d1ih7a1 321 ISYNIIDVYRVLQIDAKRQFINLSLDMGYYAKIQIQSVFSPIKTWDAIIFNSLKE 375 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSCGGGGGCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6520998999999999872899999999987959899738999999999999529
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=28249.03 Aligned_cols=1 Identities=0% Similarity=-1.057 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~r~~~~~~~~~~~~~~~a~~~~~~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~ 80 (375)
T d1o4sa_ 1 VSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGE 80 (375)
T ss_dssp CCHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 94546548977899999999999977998589989588997889999999999855876889986789999999864332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
T d1o4sa_ 81 RYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG 160 (375)
T ss_dssp HHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 15655433323346728999999999981899989982586543102321122222233344332356136777775235
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~ 240 (375)
T d1o4sa_ 161 KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGW 240 (375)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGG
T ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCCC
T ss_conf 76379981899885577999999999986887098124674003001333332112355778978999405142058866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~g~~~~~p~gg~f~~~~~ 320 (375)
T d1o4sa_ 241 RVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKV 320 (375)
T ss_dssp CCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEEEEEC
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEEC
T ss_conf 44543233331012232212344333320002334321121023678889999999987874495685689407999979
Q ss_pred ------------------------------------------------------C
Q ss_conf ------------------------------------------------------5
Q 000920 1082 ------------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~~~~e~l~~al~rl~~~l~~ 375 (375)
T d1o4sa_ 321 RGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLNS 375 (375)
T ss_dssp SSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 9997999999998599999976115899969999728999999999999999659
|
| >d1txka2 b.30.5.9 (A:23-396) Glucans biosynthesis protein G (MdoG, OpgG), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Supersandwich superfamily: Galactose mutarotase-like family: MdoG-like domain: Glucans biosynthesis protein G (MdoG, OpgG), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=28183.32 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 F~f~~l~~~Ar~lA~~py~~p~~~lP~~l~~L~Yd~yr~Irf~~~~alW~~~~~~f~v~~fh~G~~f~~pV~i~~V~~g~ 80 (374)
T d1txka2 1 FSIDDVAKQAQSLAGKGYETPKSNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATA 80 (374)
T ss_dssp CCHHHHHHHHHHHHTSCCCCCCCCCCCC----CHHHHTTCEECGGGCBTTTSSCSCEEEEEECBTTBCSCBEEEEECSSC
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCE
T ss_conf 98799999999985189889876689878729998971636486521105799998787627876679877999970995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~i~fd~~~F~y~~~~~~~~~~~~~GfAGFRl~~pln~~~~~de~~~FlGASYFRavg~g~~YGlSARGLAIdTa~~~g 160 (374)
T d1txka2 81 VKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVIGAGQVYGLSARGLAIDTALPSG 160 (374)
T ss_dssp EEECCCCGGGEECTTSCCCTTTSTTCCEEEEEEEECSSCTTCCEEEEEEESTTEEEECCTTCCCCCEEESCEESTTCTTC
T ss_pred EEEEECCHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCHHHEEEECCCCCCCCCHHHEECCCCCCCC
T ss_conf 68810188996678877784556678730599963467887443167771620224534897366311010005799987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 EEFP~F~~FWle~P~~~~~~~~vyALLDspSvtGAYrF~i~PG~~t~~dV~a~Lf~R~~v~~lGiAPLTSMf~~ge~~~~ 240 (374)
T d1txka2 161 EEFPRFKEFWIERPKPTDKRLTIYALLDSPRATGAYKFVVMPGRDTVVDVQSKIYLRDKVGKLGVAPLTSMFLFGPNQPS 240 (374)
T ss_dssp CBCCEEEEEEEECCCTTCCCEEEEEEEEETTEEEEEEEEEECSSSEEEEEEEEEEESSCCSCEEEEEEEECEEEBTTBCC
T ss_pred CCCCCCEEEEEECCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCHHHHHCCCCCCCC
T ss_conf 67987748996657899976999999239741007999997599889999889980676121350211365306898899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~dD~RPeVHDSDGL~i~~g~GE~iWRPL~NP~~l~~S~f~d~~p~GFGLlQRdR~F~~YqD~ea~Ye~RPSlWVeP~gd 320 (374)
T d1txka2 241 PANNYRPELHDSNGLSIHAGNGEWIWRPLNNPKHLAVSSFSMENPQGFGLLQRGRDFSRFEDLDDRYDLRPSAWVTPKGE 320 (374)
T ss_dssp SSCCSCSCEESCCEEEEECTTSCEEEEECCCCSSCEEEEEEEESCCEEEEECCCCCGGGTCCTTTCGGGCCEEEEEESSC
T ss_pred CCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCEEEEEECCCCCCCCCEECCCCHHHHCCCHHHHCCCCEEEEEECCC
T ss_conf 88987875525664379737996782368898862175675589863233613777232306413233487378876676
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------5
Q 000920 1082 -----------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------~ 1082 (1223)
.
T Consensus 321 WG~G~V~LvEIPT~~E~~DNIVAfW~P~~~~~~G~~~~f~Yrl~W~~~~p~~h~ 374 (374)
T d1txka2 321 WGKGSVELVEIPTNDETNDNIVAYWTPDQLPEPGKEMNFKYTITFSRDEDKLHA 374 (374)
T ss_dssp CCEEEEEEEECCCSCTTSCCEEEEEEESCCCCTTCEEEEEEEEEEESCGGGGSC
T ss_pred CCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 778679999768997243658999767887899996989989974789876679
|
| >d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=28177.74 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 v~rGL~Gv~v~eS~Is~IDg~~G~L~YRG~~i~dLa~~~sfEEVa~LL~~G~LP~~~el~~f~~~l~~~~~lp~~~~~~l 80 (374)
T d1ioma_ 1 VARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLESF 80 (374)
T ss_dssp CCGGGTTCCCSCCSSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCSCCHHHHHHH
T ss_pred CCCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99888998485655636748988899988559998703999999999978969799999999999997047988898999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~p~~~~pm~~l~~~vs~l~~~~~~~~~~~~~~~~~~~~~lia~~~~i~a~~~~~~~g~~~~~p~~~~s~a~n~l~m~~ 160 (374)
T d1ioma_ 81 KRYPVSAHPMSFLRTAVSEFGMLDPTEGDISREALYEKGLDLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYMAN 160 (374)
T ss_dssp TTSCTTSCHHHHHHHHHHHHHHTCTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 85343421157777766652125752223310689999998624305788899998469877788603679999877623
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 g~~p~~~~~~~l~~~lvl~aDHg~n~St~aaR~~aSt~~d~~~av~agl~al~GplhGga~~~~~~~l~e~~~~~~~~~~ 240 (374)
T d1ioma_ 161 GVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREW 240 (374)
T ss_dssp SSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHEEEECCCCCCCCHHHEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHH
T ss_conf 89999899999875613452588765122422554058747788888887337866786528999999850675354999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 v~~~l~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~pNvd~~~~~l~~~l 320 (374)
T d1ioma_ 241 VREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEEAGKVLNPRGIYPNVDFYSGVVYSDL 320 (374)
T ss_dssp HHHHHHTTCCCTTBSCSSCSSCCTTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTTCCBCHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
T ss_conf 99998678877776764333553237999999998776427722789999998432430266898878689999999984
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------5
Q 000920 1082 -----------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------~ 1082 (1223)
+
T Consensus 321 Gip~~~~~~lf~i~R~~Gw~AH~~E~~~~~~~l~RP~~~Y~G~~~r~~~p~~~R 374 (374)
T d1ioma_ 321 GFSLEFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKYVGELDVPYVPLEAR 374 (374)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSCSSCCCCCGGGC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 988565559999999999999999998557985277540069999988676669
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=100.00 E-value=0 Score=28175.66 Aligned_cols=1 Identities=200% Similarity=3.261 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 ~~e~~~~~~~l~~~~~~~~G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~~ 80 (374)
T d1o69a_ 1 GNELKYIEEVFKSNYIAPLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICY 80 (374)
T ss_dssp CCHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 93899999999639807899899999999999978295999678799999999986988839999499661743799843
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~ 160 (374)
T d1o69a_ 81 LKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGT 160 (374)
T ss_dssp TTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCEECCEECCC
T ss_conf 44505734665321012123342100001233201111133310336888987651694410222342145678840688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~gd~~~fSf~~~K~l~tgeGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~ 240 (374)
T d1o69a_ 161 FGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLK 240 (374)
T ss_dssp SSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 77557894257646534665222133689998530222233333333333458864244624566667777665431004
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 r~~i~~~y~~~L~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~ 320 (374)
T d1o69a_ 241 KREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPL 320 (374)
T ss_dssp HHHHHHHHHHHHTTTEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 67899998864024323333456787773140233034433224310000000010001210999999999879987873
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------5
Q 000920 1082 -----------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------~ 1082 (1223)
+
T Consensus 321 y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk 374 (374)
T d1o69a_ 321 WKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK 374 (374)
T ss_dssp CCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHCHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 854342966534787899899999839898969887799999999999999979
|
| >d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NagB/RpiA/CoA transferase-like superfamily: NagB/RpiA/CoA transferase-like family: IF2B-like domain: Initiation factor 2b species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=0 Score=28173.24 Aligned_cols=1 Identities=0% Similarity=-1.291 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~l~si~~~~~~v~ilDQ~~LP~~~~~~~~~t~~~v~~AIk~M~VRGAPaIgvaaA~glala~~~~~~~~~~~s 80 (374)
T d2a0ua1 1 MSKPHHATLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAIAVSAALGIAVATQRKAANGELKS 80 (374)
T ss_dssp CCCCSSCCCCSEEEETTEEEEECTTTTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCCCEEEEEECCHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 99887895016999699999985788998179999699999998856370259429999999999999985222753001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~el~~~L~~a~~~L~~sRPTAVNL~nAv~rv~~~i~~~~~~~s~~e~~~~ll~~A~~i~~eD~~~n~~Ig~~Ga~li~e 160 (374)
T d2a0ua1 81 GREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTNDVAFNEGIMRHGAAHILA 160 (374)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSCSHHHHHHHHHHHHHHHSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999985597542256899999999864287778999999999999999999999999999978999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~ilThcn~g~Lat~~~gtal~~i~~a~~~gk~~~V~v~EtRP~~qG~rlta~~L~~~gi~~t~i~Dsa~~ 240 (374)
T d2a0ua1 161 AAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAAS 240 (374)
T ss_dssp HHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHH
T ss_pred HHHHCCCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCHH
T ss_conf 88621788732676416753375113224677678997698617998046433464689999998616771899545256
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~m~~~~v~~VivGad~v~~nG~v~nkiGT~~~A~~A~~~~vP~~v~a~~~k~~~~~~~~~~i~ie~r~~~ev~~~~~~~ 320 (374)
T d2a0ua1 241 SLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVTK 320 (374)
T ss_dssp HHHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCCTHHHHBCTTTC
T ss_pred HHHHCCCEEEEEECCEEEEECCCEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
T ss_conf 66205642589852318984697886246499999999749988999115642767799775646678967734334566
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------5
Q 000920 1082 -----------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~v~np~fD~tP~~lIt~~iiTe~G~~~P~~~~~~~~~~~~~~~~ 374 (374)
T d2a0ua1 321 QRVVADGPHLSIWNPVFDITPSELITGGIITEKGVQAPAASAPYYDIASIIAQA 374 (374)
T ss_dssp CBCSCCCTTEEECCBSEEEECGGGCCSEEECSSCEECCCSSSSCCCHHHHHHCC
T ss_pred CEECCCCCCCCEECCCCCCCCHHHCCCEEECCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 120257888602486831789699499788889861655467721479896239
|
| >d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Hect, E3 ligase catalytic domain superfamily: Hect, E3 ligase catalytic domain family: Hect, E3 ligase catalytic domain domain: WW domain-containing protein 1, WWP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28172.67 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~f~~~~~~~~~~~~~~i~V~R~~l~~d~~~~l~~~~~~~l~~~l~V~F~gE~g~D~GG~~rEff~~l~~el 80 (374)
T d1nd7a_ 1 HMGFRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEV 80 (374)
T ss_dssp CCTHHHHHHHHHHHHHHTCCSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETTTCCCCCTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 96378999999988761689885599976565899999999716989847876999789874478711999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~p~~~lf~~~~~~~~~~~~~p~~~~~~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~~~t~~DL~~iD~~~ 160 (374)
T d1nd7a_ 81 LNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEF 160 (374)
T ss_dssp TCGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHH
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHCHHH
T ss_conf 08866875664798855355874436805899998857999999984961387756899988549989899998857898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~sl~~l~~~~~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~VT~~N~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~v 240 (374)
T d1nd7a_ 161 YNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEV 240 (374)
T ss_dssp HHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 87499998546410466035787751278742254478997652068789999999999997211789999999869876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ip~~~l~~f~~~eL~~licG~~~id~~~l~~~~~y~gy~~~s~~i~~fw~vl~~~t~ee~~~fL~FvTGs~rlP~~G~~~ 320 (374)
T d1nd7a_ 241 VPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAE 320 (374)
T ss_dssp SCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEESCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGG
T ss_pred CCHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHEEECCCCCCCCCCHHH
T ss_conf 79898764889999986279987788999643261367899889999999877069999987446636899889864565
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------5
Q 000920 1082 -----------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------~ 1082 (1223)
-
T Consensus 321 l~~~~~~~~~~i~~~~~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~e 374 (374)
T d1nd7a_ 321 LMGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374 (374)
T ss_dssp CEETTEECCEEEECCSCTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred HCCCCCCCCEEECCCCCCCCCCCHHHHHCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 435678875131468999999705440267669898899999999999997149
|
| >d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: ERO1-like superfamily: ERO1-like family: ERO1-like domain: Endoplasmic oxidoreductin 1, Ero1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=28171.87 Aligned_cols=1 Identities=100% Similarity=3.095 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
+
T Consensus 1 ~s~~~vd~~N~~i~p~L~~L~~~dyFRyfkVnL~~~CPFW~~d~~~C~~~~C~V~~c~dee~iP~~~~~~~~~~~~~~~~ 80 (374)
T d1rp4a_ 1 GSFNELNAINENIRDDLSALLKSDFFKYFRLDLYKQCSFWDANDGLCLNRACSVDVVEDWDTLPEYWQPEILGSFNNDTM 80 (374)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSTTTSEEEEESSCCCSSSCSSSSCCCTTTTBCCCSSCGGGSCGGGSHHHHTCCCTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 97878999899988999986378960434338899898999432574998998803775565861024101046664112
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dfC~~dD~~~~~~~YVdLl~NPERyTGY~G~~a~~IW~~IY~ENCF~~~~ 160 (374)
T d1rp4a_ 81 KEADDSDDECKFLDQLCQTSKKPVDIEDTINYCDVNDFNGKNAVLIDLTANPERFTGYGGKQAGQIWSTIYQDNCFTIGE 160 (374)
T ss_dssp EECCTTCGGGSBHHHHSSTTTSSCCSSSCCCHHHHTTCCCTTEEEEETTTSCCCCCCBCHHHHHHHHHHHHHTCCCCTTS
T ss_pred HHCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 21145653002204033320355554431101334456777754766300856235888873788999999975789876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~c~ekrvfyrlISGlHsSIs~Hl~~~yl~~~~~~w~pN~~~f~~R~g~~p~rl~NLYF~y~~~LrAl~k~~~~l~~~~ 240 (374)
T d1rp4a_ 161 TGESLAKDAFYRLVSGFHASIGTHLSKEYLNTKTGKWEPNLDLFMARIGNFPDRVTNMYFNYAVVAKALWKIQPYLPEFS 240 (374)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHSEEETTTTEEECCHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHGGGCCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 43107788999988888888999998764167767637899999999736838889899999999999998888886467
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~~fde~~~f~~~~~~~lk~efr~~frnisriMDCV~CeKCrLwGKlQt~GlgtALKIL 320 (374)
T d1rp4a_ 241 FCDLVNKEIKNKMDNVISQLDTKIFNEDLVFANDLSLTLKDEFRSRFKNVTKIMDCVQCDRCRLWGKIQTTGYATALKIL 320 (374)
T ss_dssp TTSSTTTTHHHHHHHHHHTTCCGGGGSCTTCTTTSCHHHHHHHHHHHHHHHHGGGGCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 77877789999999999871666678888538841399999999999999999716676376756899887799999998
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------5
Q 000920 1082 -----------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------~ 1082 (1223)
+
T Consensus 321 f~~~~~~~~~~~~~~~~L~R~ElvALiNt~~rlS~SI~~v~~F~~m~~~~~~~~ 374 (374)
T d1rp4a_ 321 FEINDADEFTKQHIVGKLTKYELIALLQTFGRLSESIESVNMFEKMYGKRLLER 374 (374)
T ss_dssp HHHHTCCHHHHHHHHHTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 535553346766664554599999999999999999999999999999764129
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=0 Score=28171.52 Aligned_cols=1 Identities=0% Similarity=-0.725 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~P~LF~Pl~Ig~~~lkNRiv~apm~~~~~~dg~~t~~~~~yy~~rA~gGlii~e~~~V~~~~~~~~~~~~i~~d~~ 80 (374)
T d1gwja_ 1 TSFSNPGLFTPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGIWTDAQ 80 (374)
T ss_dssp CCCCCCCTTSCEEETTEEESCSEEECCCCCCCCSSSCCCHHHHHHHHHTTTSSEEEEEEEESSGGGCCBTTCCBCSSHHH
T ss_pred CCCCCCCCCCCEEECCEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCHHHH
T ss_conf 99994999998418998978875874458988999998799999999984878799974798886578889873555554
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 i~~~k~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ 160 (374)
T d1gwja_ 81 EAGWKGVVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDGIPG 160 (374)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 15666689998605862676554168655545588887100035556667655443565544567878860049999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ii~~f~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~ 240 (374)
T d1gwja_ 161 IVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFL 240 (374)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 99999999999998099888732220346778887535764454343121100567889998998838753225553100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~ae~~l~~g~aD 320 (374)
T d1gwja_ 241 ELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNYDAGRAQARLDDNTAD 320 (374)
T ss_dssp CCTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCCCCCTTHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCS
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCC
T ss_conf 23687653247888876413110472277751576457886524999999998738878997895999999999869974
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------5
Q 000920 1082 -----------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------~ 1082 (1223)
-
T Consensus 321 lV~~gR~~iadPd~~~K~~~G~~l~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~ 374 (374)
T d1gwja_ 321 AVAFGRPFIANPDLPERFRLGAALNEPDPSTFYGGAEVGYTDYPFLDNGHDRLG 374 (374)
T ss_dssp EEEESHHHHHCTTHHHHHHHTCCCCCCCGGGSSSSSSTTTTCCCCCCCSSCCCC
T ss_pred EEHHHHHHHHCCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHCC
T ss_conf 844669998792299999759988888841125799988387888542235319
|
| >d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Glutamine synthetase/guanido kinase superfamily: Glutamine synthetase/guanido kinase family: Glutamine synthetase catalytic domain domain: Glutamine synthetase, C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=28171.21 Aligned_cols=1 Identities=0% Similarity=-0.426 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~DPR~iLkk~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T d2bvca2 1 SRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRGYKVRHKG 80 (374)
T ss_dssp TTCHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTBGGGTTCSBCTTSCBCCCCCBCTTC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98869999999999997799870357726589997145445566776201363000246787656788887786656566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~i~~~l~~~Gi~~~~~~~E~~~~gQ~Ei~~~~~~~l~aAD~~~~~k~~ik~vA~~~G~~atFmp 160 (374)
T d2bvca2 81 GYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMP 160 (374)
T ss_dssp CSCBCTTTSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCS
T ss_pred CEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 50002000226899999998787469763763215666825887067630668999999999999999986397477764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 KP~~~~~Gsg~H~h~Sl~~~~~n~~~~~~~~~~lS~~~~~~iaGlL~h~~~l~al~~P~vNSY~Rl~~~~~ap~~~~Wg~ 240 (374)
T d2bvca2 161 KPLFGDNGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQ 240 (374)
T ss_dssp CSSTTSCCCCEEEEEEEEETTEECSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHSCSTTHHHHSSTTSSSCSBCCEEE
T ss_pred EECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECC
T ss_conf 31567887660079974158988655566655567999999999985209888987378742653489875644774046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~nR~~~iRi~~~~~~~~~~riE~R~~da~aNPYL~lAailaagl~Gi~~~l~p~~p~~~~~~~~~~~~~~~~~~LP~sl~ 320 (374)
T d2bvca2 241 RNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYELPPEEAASIPQTPTQLS 320 (374)
T ss_dssp TCTTSSEEECCCCSCTTSCCEEECSCCSSSCHHHHHHHHHHHHHHHHHTTCCCCCCCCSCGGGCCHHHHHTSCBCCSSHH
T ss_pred CCCCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHH
T ss_conf 76655311024468975626885278833107899999999866656412344687778513299657658132501799
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------5
Q 000920 1082 -----------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------~ 1082 (1223)
.
T Consensus 321 eAl~~l~~d~~~~~~~~~~g~~~i~~y~~~Kr~~E~~~~~~~vt~wE~~~Y~~~ 374 (374)
T d2bvca2 321 DVIDRLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNIRPHPYEFALYYDV 374 (374)
T ss_dssp HHHHHHHHCCHHHHGGGSSCHHHHHHHHHHHHHHTHHHHHTSCCHHHHHHHTTC
T ss_pred HHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC
T ss_conf 999999759787876563789999999999999999999689999999604899
|
| >d1so7a_ b.68.1.1 (A:) Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Sialidase 2 (Neu2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28167.18 Aligned_cols=1 Identities=0% Similarity=-2.154 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~p~~~~~~~f~~g~~~yRiP~lv~~~~g~~l~A~a~~r~~~~d~~~~~iv~~rS~D~G~T~~~~Ws~~~~v~~~~~~~~~ 80 (374)
T d1so7a_ 1 LPVLQKESVFQSGAHAYRIPALLYLPGQQSLLAFAEQRASKKDEHAELIVLRRGDYDAPTHQVQWQAQEVVAQARLDGHR 80 (374)
T ss_dssp CCCSEEEEEEECTTCCEEEEEEEEETTTTEEEEEEEECC-------CEEEEEEEEEEGGGTEEEECCCEECTTSCCTTEE
T ss_pred CCCCCEEEEEECCCCCEEECEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCE
T ss_conf 99431267768895368647799985999999999687677668987699999637883043466798994778989955
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~p~~~~d~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~p~~i~~~~~~~~~~~~~~~~~~~~~ 160 (374)
T d1so7a_ 81 SMNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRANVTRLCQVTSTDHGRTWSSPRDLTDAAIGPAYREWSTFAVGPGH 160 (374)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSCCHHHHHCTTCCCCEEEEEEESSTTSSCCCCEECHHHHHGGGGGGEEEEEECSSC
T ss_pred EEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCEEEEEECCC
T ss_conf 56212789899997999998506877653224688885408999688886335686026610145435774366520233
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~r 240 (374)
T d1so7a_ 161 CLQLNDRARSLVVPAYAYRKLHPIQRPIPSAFCFLSHDHGRTWARGHFVAQDTLECQVAEVETGEQRVVTLNARSHLRAR 240 (374)
T ss_dssp CEECCSTTCCEEEEEEEEECCSSSSCCEEEEEEEEESSTTSSCEECCCCSBSEEEEEEEEEEC--CEEEEEEEEESSSEE
T ss_pred CEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCE
T ss_conf 12664048868866676516766678971499999358754110156568888422588851456643677425478967
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~S~D~G~tW~~~~~~~~l~~~~~~~~~~s~i~~~~~~~~~~~~~~~ll~~~p~~~~~r~~~~l~l~~S~D~G~tW~~ 320 (374)
T d1so7a_ 241 VQAQSTNDGLDFQESQLVKKLVEPPPQGCQGSVISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAPEAWSE 320 (374)
T ss_dssp EEEEESSTTSSCCCCEEEEEEECCTTTCCCCEEEEEECCCC----CSEEEEEEEECCSSSSEEEEEEEESSTTCGGGCCC
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCEECCC
T ss_conf 99996279966543202333448888885314898335434444688369983788988887608999998889916478
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------5
Q 000920 1082 -----------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~i~~g~~~YS~~~~~~dg~~~~~~i~~lyE~~~~~~i~f~~~~l~~~~~~~~ 374 (374)
T d1so7a_ 321 PVLLAKGSCAYSDLQSMGTGPDGSPLFGCLYEANDYEEIVFLMFTLKQAFPAEY 374 (374)
T ss_dssp CEEEEEEEEEEEEEEEEEECTTSSEEEEEEEEETTTTEEEEEEEEHHHHCGGGC
T ss_pred CEEECCCCCCCCHHEECCCCCCCCEEEEEEEECCCCCEEEEEEEEHHHHCCCCC
T ss_conf 548688997684525867998885699999956997657999989999175779
|
| >d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B {Arthrobacter sp., tad20 [TaxId: 1667]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Psychrophilic chitinase B species: Arthrobacter sp., tad20 [TaxId: 1667]
Probab=100.00 E-value=0 Score=28164.92 Aligned_cols=1 Identities=0% Similarity=-0.726 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~g~rvvgYy~~W~~y~r~~~~~~l~~~i~~~~lTHi~YAFa~i~~~~~~~~~~~~~~~~~~~g~~~~~d~~~d~ 80 (374)
T d1kfwa1 1 PLTSTVNGYRNVGYFAQWGVYGRAFQAKQLDVSGTAKNLTHINYSFGNINNQTLTCFMANKAQGTGPNGSDGAGDAWADF 80 (374)
T ss_dssp CCBSSBTTBEEEEEEEGGGGSTTCCCHHHHHHTSCGGGCSEEEEEEECBCTTTCSBCCCEECCCSSTTTTTTCEEHHHHH
T ss_pred CCCCCCCCCEEEEEECCCEECCCCCCHHHCCCCCCHHHCCEEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 98888888789999895400588898634767798524987999123014875532024311134778752347606541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lK~~~p~lKvllSiGGw~~s~~F~~~a~~~~~R~~Fi~s~v~~~~~~~l~ 160 (374)
T d1kfwa1 81 GMGYAADKSVSGKADTWDQPLAGSFNQLKQLKAKNPKLKVMISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYIKGNLP 160 (374)
T ss_dssp TCCCCTTTSSSSSCCCTTCSCCHHHHHHHHHHTTCTTCEEEEEEECSSSCTTHHHHTSSHHHHHHHHHHHHHHHTSCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 33334444456655653321013689999998618997599998189877763111047889999999999999981975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~FDGiDiDWEyP~~~~~~~~~~~~~~~D~~nf~~Ll~eLR~~ld~~~~~~~k~~~Ls~A~~~~~~~~ 240 (374)
T d1kfwa1 161 NFEGRGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNNKKYVLSAFLPANPADI 240 (374)
T ss_dssp EETTEEETTTTTTTCCEEEEECSCTTSSCSSTTCCCCTTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECSSHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC
T ss_conf 21111232233244663011226514446777777887648999999999999999987563575389999852540011
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~d~~~i~~~vD~invMtYD~~G~w~~~~tg~~apLy~~~~~~~~~~~~~svd~aV~~~~~~Gvp~~KlvlGipyd~ 320 (374)
T d1kfwa1 241 DAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADPRAPSKKFSADKAVKKYLAAGIDPKQLGLGLAADN 320 (374)
T ss_dssp HHHTTTCGGGGGTCSEEEECCSCSSCTTSTTBCCCSSCSSCCTTCCSCGGGCCCHHHHHHHHHHTTCCGGGEEEEEESCC
T ss_pred CCCCCCHHHHHCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCHHHEEEEECCCC
T ss_conf 23473266452004799997144046789987776675779977877777770699999999987999899389846799
Q ss_pred -----------------------------------------------------C
Q ss_conf -----------------------------------------------------5
Q 000920 1082 -----------------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~si~~K~~y~~~~glgG~m~W~~~~D~~g~Ll~a~~~~l~~~~~~~~~~~~p~ 374 (374)
T d1kfwa1 321 IATTKQKTDYIVSKGLGGGMWWELSGDRNGELVGAMSDKFRAAAPGPVTEAAPP 374 (374)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECGGGCTTCHHHHHHHHHHHHSSCCSCCCBCCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 999999999998569953999975579997499999998458899987788998
|
| >d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: UDP-N-acetylglucosamine 2-epimerase domain: UDP-N-acetylglucosamine 2-epimerase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=28097.47 Aligned_cols=1 Identities=100% Similarity=1.998 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 ~MkkI~~v~GtR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~~~~~~~~~~~i~~d~~l~~~~~~~s~~~~~~~~~~~~ 80 (373)
T d1v4va_ 1 GMKRVVLAFGTRPEATKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFGIQEDRNLDVMQERQALPDLAARILPQA 80 (373)
T ss_dssp CCEEEEEEECSHHHHHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99769999873697999999999997189998899992688255637122408886656787888887789999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~l~~~kPD~vlv~GDr~e~la~a~aa~~~~ipi~HiegG~rsg~~~~~~~de~~R~~iskls~~hf~~t~~~~~~L~~ 160 (373)
T d1v4va_ 81 ARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRSGNLKEPFPEEANRRLTDVLTDLDFAPTPLAKANLLK 160 (373)
T ss_dssp HHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCCSCTTSSTTHHHHHHHHHHHCSEEEESSHHHHHHHHT
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHH
T ss_conf 66664037640011136753103778898762122241343455433567616666655223443255122156666666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~Ge~~~~I~~vG~p~~D~i~~~~~~~~~~~~~~~~~~~lvt~hr~~n~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~ 240 (373)
T d1v4va_ 161 EGKREEGILVTGQTGVDAVLLAAKLGRLPEGLPEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNPVV 240 (373)
T ss_dssp TTCCGGGEEECCCHHHHHHHHHHHHCCCCTTCCSSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCHHH
T ss_pred HCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 30454213442662155777654311000223445531688426555312789999999986533565035640342221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~n~~~~~~l~~~~~l~ll~~s~~vignSssgi~Ea~~lg~P~Inir~~~eRqeg~~~g~nvlv~~d~~~ 320 (373)
T d1v4va_ 241 REAVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDSGGLQEEGAALGVPVVVLRNVTERPEGLKAGILKLAGTDPEG 320 (373)
T ss_dssp HHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEEEEEESCHHHHHHHHHTTCCEEECSSSCSCHHHHHHTSEEECCSCHHH
T ss_pred HHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCEEEECCCCHHHHCCHHHCCCEEEECCCCCCHHHHHCCEEEECCCCHHH
T ss_conf 03555543033320011100078888876430168506412222003205868984887669878962904975899999
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------5
Q 000920 1082 ----------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------~ 1082 (1223)
.
T Consensus 321 I~~~i~~~l~~~~~~~~~~~~~npYGdG~as~rI~~~L~~~~~~~~~~~~~~~ 373 (373)
T d1v4va_ 321 VYRVVKGLLENPEELSRMRKAKNPYGDGKAGLMVARGVAWRLGLGPRPEDWLP 373 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHSCCSSCCSCHHHHHHHHHHHHTTSSCCCCCCCC
T ss_pred HHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999719898864024889898987999999999998489989878899
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=100.00 E-value=0 Score=28096.43 Aligned_cols=1 Identities=0% Similarity=0.205 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
+
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREKQQFP 80 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGGGEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCEEEECCCEEEECCCHHHHHHHHHHCCCCCCCCC
T ss_conf 99899989688999999999868998999958998858668954299899538658727887999999983885212332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (373)
T d1seza1 81 LSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPF 160 (373)
T ss_dssp SSCCCEEEESSSSEEECCSSHHHHHHSSSSCHHHHHHHHTHHHHC----------CCCBHHHHHHHHHCHHHHHTTHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCHHCCCCHH
T ss_conf 11233212244333221122134442122211355566788887642000000111000000012223432001011012
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~ 240 (373)
T d1seza1 161 VAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKD 240 (373)
T ss_dssp HHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEETTCTHHHHHHHHTT
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 21010233110025567899987641001445567876404322222101234333203540453034612799999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 l~~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~ 320 (373)
T d1seza1 241 LREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGH 320 (373)
T ss_dssp SCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCT
T ss_pred HCCCEEECCCEEEEEEEECCCCCCCCCCEEEECCCCCCCCEEEECCEEEECCCHHHHHHCCCCCCCCCCCHHHHCCCCCC
T ss_conf 50655764987899999678542113552786124789746998899999986577653365557775332330100245
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------5
Q 000920 1082 ----------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~t~~pglf~aGd~~~g~~~~~A~~~G~~aA~~i~~~L~~~~ 373 (373)
T d1seza1 321 NYDSVLDAIDKMEKNLPGLFYAGNHRGGLSVGKALSSGCNAADLVISYLESVS 373 (373)
T ss_dssp THHHHHHHHHHHHHHSTTEEECCSSSSCSSHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 78867626423478999999972578765399999999999999999875289
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=100.00 E-value=0 Score=28095.52 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~a~~~~~~~~~a~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l 80 (373)
T d2madh_ 1 SSASAAAAAAAAALAAGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEF 80 (373)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEECCCCCEE
T ss_conf 90565434310132145678986563018999789997342257876599998999979999957988607986899989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 160 (373)
T d2madh_ 81 ALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD 160 (373)
T ss_pred EEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEE
T ss_conf 99960577532124531899997778938889726885136851689708998589937999986987467762368728
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 240 (373)
T d2madh_ 161 DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQAD 240 (373)
T ss_pred EEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCEEEEEE
T ss_conf 99824520699962899199999479939999747742667886300366753043458878994299925896599997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~ 320 (373)
T d2madh_ 241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDV 320 (373)
T ss_pred CCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCE
T ss_conf 68990789776305647578664136741335771499759995488824786258986999989999698986689982
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------5
Q 000920 1082 ----------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~~ 373 (373)
T d2madh_ 321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNEA 373 (373)
T ss_pred EEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEECCC
T ss_conf 58999989998999996799929999999998999988889898189984689
|
| >d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like I superfamily: Periplasmic binding protein-like I family: L-arabinose binding protein-like domain: Amide receptor/negative regulator of the amidase operon (AmiC) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=0 Score=28094.62 Aligned_cols=1 Identities=0% Similarity=-0.793 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~pvIG~~~p~tG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~i~l~~~D~~~~~~~a~~~a~~Li~~~~V~aiiG~~~S~ 80 (373)
T d1qo0a_ 1 RPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSH 80 (373)
T ss_dssp CCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCCEEEEECCTTCHHHHHHHHHHHHHHSCCCEEEECCSHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHH
T ss_conf 98899972886842655299999999999998850996886889999769999999999999999608966998041333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~av~~~~~~~~vp~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~vaii~~d~~~g~~~~~~~~~~~~~ 160 (373)
T d1qo0a_ 81 TRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQ 160 (373)
T ss_dssp HHHHHHHHHHHHTCEEEECSCCCCCCCCTTEEECSCCGGGTHHHHHHHHHHHSCSEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 24456899997199678223354345687336604671787777888987515742553467764037888653111220
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~G~~vv~~~~~~~~~~~~d~~~~~~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (373)
T d1qo0a_ 161 HGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVAKMESDV 240 (373)
T ss_dssp TTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCSTTHHHHHHHHHHHHCSSCCCCEEESSCCHHHHTTSCHHH
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 36733678971676442046799999875188732320235047779999998457656640125545248776444443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~aY~a~~~~a~Ai~~ag~~d~~~i~~aL~~~~~~~~~G~ 320 (373)
T d1qo0a_ 241 AEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRHLYDIDIDAPQGP 320 (373)
T ss_dssp HTTCEEEESCCTTCCSHHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHSSCCEEETTEE
T ss_pred HCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEECCCEE
T ss_conf 05720102442000027789999999987398788770799999999999999998689999999999855953078365
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------5
Q 000920 1082 ----------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------~ 1082 (1223)
.
T Consensus 321 i~f~~~~~~~~~~~~i~q~~~dg~~~vv~~~~~~v~p~p~~~~~~~~~w~~~~ 373 (373)
T d1qo0a_ 321 VRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEPIRPDPYVVVHNLDDWSASM 373 (373)
T ss_dssp EEECTTTSBEEBCCEEEEECTTSCEEEEEECSSCBCCCTTCCSCCGGGGGGGC
T ss_pred EEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99838998346866999993699589996069836799974888865455569
|
| >d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Dextranase, catalytic domain domain: Dextranase, catalytic domain species: Penicillium minioluteum [TaxId: 28574]
Probab=100.00 E-value=0 Score=28094.11 Aligned_cols=1 Identities=0% Similarity=-1.423 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~ga~p~~~~d~t~a~~~a~~~~~~~~~~~vvy~PpG~y~~g~~~~~~~~~~~~~g~~l~~~~~~~y~~~G~~~~~~i~ 80 (373)
T d1ogmx2 1 LPSGMIPHMTPDNTQTMTPGPINNGDWGAKSILYFPPGVYWMNQDQSGNSGKLGSNHIRLNSNTYWVYLAPGAYVKGAIE 80 (373)
T ss_dssp CCGGGSCCCCTTTEEECCSEEECTTTTCSSSEEEECSEEEEECBCTTCCBSCSSSCCEECCTTCCEEEECTTEEEESCEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCEEEECCEEECCCEEEECCCEEECCCCEEEECCCCCEEEEEEE
T ss_conf 98886589898846875310465244689888998994638387430474588738669636743776079857986798
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~nv~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~n~~i~giti~~s~~~~~~~~~~~~v~i~ 160 (373)
T d1ogmx2 81 YFTKQNFYATGHGILSGENYVYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQ 160 (373)
T ss_dssp ECCSSCEEEESSCEEECTTSCTTCBTTTTTBSCCCTTTBCCSEEESCCCSSEEEEEESCEEECCSSCCEEECSSSCEEEE
T ss_pred ECCCCEEEEECCEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECEEEECCCEEEEEECCCCEEEEE
T ss_conf 63765089971207838866632566543223346776567755899984227999677997899169987268759999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~i~~~~~~~~n~dgi~~~~~~~i~~~~~~~gDD~i~~~s~~i~v~n~~~~~~~~~~~~~~g~~g~~i~nv~v~ni~v~ 240 (373)
T d1ogmx2 161 ISDYKQVGAFFFQTDGPEIYPNSVVHDVFWHVNDDAIKIYYSGASVSRATIWKCHNDPIIQMGWTSRDISGVTIDTLNVI 240 (373)
T ss_dssp EEEEEEECCCSTTCCCCBCCTTCEEEEEEEEESSCSEECCSTTCEEEEEEEEECSSSCSEECCSSCCCEEEEEEEEEEEE
T ss_pred EEEEEECCCCCCCCEEEECCCCEEEEEEEEECCCCEEEECCCCEEEEEEEEECCCCEEEEEECCCCCCCCEEEEEEEEEE
T ss_conf 78999668877787005324878999528963887799657988999799978875247883667887631599915998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ni~f~nI~~~~~~~~~i~~~~~~~~~~~~i~nV~i~nI~~~~~~~~ 320 (373)
T d1ogmx2 241 HTRYIKSETVVPSAIIGASPFYASGMSPDSRKSISMTVSNVVCEGLCPSLFRITPLQNYKNFVVKNVAFPDGLQTNSIGT 320 (373)
T ss_dssp ECCCSSCCTTTTCEEEEECCCSSSSCCCEEEEEEEEEEEEEEECSSBCEEEEECCSEEEEEEEEEEEEETTCBCCSTTCT
T ss_pred CCEECCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEEEEECCCC
T ss_conf 85611220033434443322112100689869992899919998753676999876788888332189984499804571
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------5
Q 000920 1082 ----------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~~Ni~i~~~~i~~~n~~~~~~~~~~~~g~~~~~~~~~ 373 (373)
T d1ogmx2 321 GESIIPAASGLTMGLAISAWTIGGQKVTMENFQANSLGQFNIDGSYWGEWQIS 373 (373)
T ss_dssp TCEEECCCTTCCEEEEEEEEEETTEECCTTTCSTTSSSCEEECGGGTTTCEEC
T ss_pred EEEEEECCCCCCCCEEEECEEEECEEEECCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 66875014687388578676991969864777777321678777504531229
|
| >d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Plasmepsin (a hemoglobin-degrading enzyme) species: Plasmodium vivax [TaxId: 5855]
Probab=100.00 E-value=0 Score=28093.71 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~Y~~~I~iGtP~Q~~~v~~D 80 (373)
T d1miqa_ 1 HLTLAFKIERPYDKVLKTISKKNLKNYIKETFNFFKSGYMKQNYLGSENDVIELDDVANIMFYGEGEVGDNHQKFMLIFD 80 (373)
T ss_dssp CEEEEEEEECHHHHHHHHSCHHHHHHHHHHHHHHHTTSCTTCCCCCBTTBCCCGGGTBCEEEECCCEETTTTEECCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEEEE
T ss_conf 92233303582467787766666889887644331134232122256787687255169789999998799989999997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 TGSs~lWv~~~~C~~~~c~~~~~y~~~~SsT~~~~~~~~~~~y~~G~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~ 160 (373)
T d1miqa_ 81 TGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMPYKFIEVTDTDDLEPI 160 (373)
T ss_dssp TTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEECGGGTTH
T ss_pred CCCHHEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCEEEEEEEEEEEEECCCCEEEEEEEEEECCCCCCC
T ss_conf 99625189879999743468982389889853388963899928817999999788897674267668999840356753
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~g~l~~Gg~d~~~~~g~~~~~pv~~~~~w~ 240 (373)
T d1miqa_ 161 YSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQ 240 (373)
T ss_dssp HHHSCCCEEEECSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEEBSSSSSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHCCCCCEEEEEECCCCCCCCEEECCCCCCHHCCCEEEEEECCCCCEEE
T ss_conf 23566563566444433578854301124443225653278871367888715642677830114424687114552489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 i~l~~~~~~~~~~~~~~iiDTGTs~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~P~itf~f~g~~~~l~p~~y~ 320 (373)
T d1miqa_ 241 IDLDVHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYM 320 (373)
T ss_dssp EEEEEEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCEECTTSSCEEEETTCTTCCCEEEECSSCEEEECGGGSE
T ss_pred EEEEEEECCEECCCCCEEECCCCCEECCCHHHHHHHHHHHCCEECCCCCEEEECCCCCCCCEEEEEECCEEEEECHHHEE
T ss_conf 99998778675487416862677213157899999999839755068970675344688863999999999998889906
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------5
Q 000920 1082 ----------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~rIGfA~ak~ 373 (373)
T d1miqa_ 321 NPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIAKN 373 (373)
T ss_dssp EESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEECC
T ss_pred EEEEECCCCEEEEEEEECCCCCCCEEECHHHHCCEEEEEECCCCEEEEEECCC
T ss_conf 88996799899999998888999899717943769999999999999998079
|
| >d1m0wa2 d.142.1.6 (A:6-210,A:324-491) Eukaryotic glutathione synthetase ATP-binding domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Eukaryotic glutathione synthetase ATP-binding domain domain: Eukaryotic glutathione synthetase ATP-binding domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=28092.88 Aligned_cols=1 Identities=0% Similarity=-1.224 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~s~~~~~~l~~~~~dwa~~hGl~~~~~~~~~~~~~~~~aP~tL~Pspfpr~~F~~a~~vq~~~n~L~~~vS~D~~~~~~f 80 (373)
T d1m0wa2 1 PSKDQLNELIQEVNQWAITNGLSMYPPKFEENPSNASVSPVTIYPTPIPRKCFDEAVQIQPVFNELYARITQDMAQPDSY 80 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEECCTTGGGCTTEEEECCEESSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 98799999999999999971947436877789886145787952776888999999999999999999997240426899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 L~~~l~~~~~~D~~Ft~~L~~i~~~v~~~g~~~~q~i~Lgl~RSDYMld~~~~~~~~KQVE~NTIa~sfg~ls~~v~~lH 160 (373)
T d1m0wa2 81 LHKTTEALALSDSEFTGKLWSLYLATLKSAQYKKQNFRLGIFRSDYLIDKKKGTEQIKQVEFNTVSVSFAGLSEKVDRLH 160 (373)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHHTSCCSSCCCCCEEEEEEEEEEEEEETTEEEEEEEEEECSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCCCCCCCHHHHEEEEEEEHHHHHHHHHHHHHH
T ss_conf 99998767405889999999999999854446243258744301321477666523441230020020121888999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~l~~~~~~d~~~~~~~d~~~~~~~~~~~le~~~a~~~~~~l~g~KKvQq~La~pgvLe~Fl~d~~~~~~lr~tF~~ly~ 240 (373)
T d1m0wa2 161 SYLNRANKYDPKGPIYNDQNMVISDSGYLLSKALAKAVESYKSQQKKIQQLLTDEGVLGKYISDAEKKSSLLKTFVKIYP 240 (373)
T ss_dssp HHHHHTTSSCTTSCSSCGGGBCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHTTSHHHHTTTCCCHHHHHHHHTTCCCEEE
T ss_pred HHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 99985557788775016886545155189886666466776467652672103668898867988999999998504786
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 Ld~~~~g~~~~~~Al~~p~~~VLKPQrEGGGnniyg~dI~~~L~~l~~~e~~ayILMerI~Pp~~~~~~~~r~~~~~~~~ 320 (373)
T d1m0wa2 241 LDDTKLGREGKRLALSEPSKYVLKPQREGGGNNVYKENIPNFLKGIEERHWDAYILMELIEPELNENNIILRDNKSYNEP 320 (373)
T ss_dssp CSSSHHHHHHHHHHHHCGGGEEEEESSCSSCCCEEGGGHHHHHHTSCGGGGGGEEEEECCCCCCBCSCCEEETTEEECCC
T ss_pred CCCCHHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEECCCEEEECC
T ss_conf 78502128999998619153897455557665401479999987478444113307854179988875997299011277
Q ss_pred ----------------------------------------------------C
Q ss_conf ----------------------------------------------------5
Q 000920 1082 ----------------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~vSELGifG~~l~~~~~v~~N~~~G~LlRTK~~~~nEGGVaaG~g~lDS~~L~ 373 (373)
T d1m0wa2 321 IISELGIYGCVLFNDEQVLSNEFSGSLLRSKFNTSNEGGVAAGFGCLDSIILY 373 (373)
T ss_dssp BEEEEEEEEEEEECSSCEEEEEEEEEEEEEECCEEETTEEEECCEEECCEEEC
T ss_pred EEECCCCCEEEEECCCEEEEECCEEEEEECCCCCCCCCCEECCEEECCCHHCC
T ss_conf 32033041899978977997165028896279988876810354223422009
|
| >d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: tRNA-guanine transglycosylase family: tRNA-guanine transglycosylase domain: Queosine tRNA-guanine transglycosylase species: Zymomonas mobilis [TaxId: 542]
Probab=100.00 E-value=0 Score=28024.49 Aligned_cols=1 Identities=0% Similarity=-1.424 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~Fei~~~d~~AR~G~L~~~~g~i~TP~fmpv~t~g~v~~ltpd~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gglh 80 (372)
T d1r5ya_ 1 RPRFSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRPGAERIAKLGGLH 80 (372)
T ss_dssp CCSCEEEEEEEETTEEEEEEEETTEEEEESEEECBCTTSSCTTCCHHHHHHTTCSCEEEEHHHHHHTTCHHHHHHTTCHH
T ss_pred CCCEEEEEEECCCCEEEEEEEECCEEEECCEEEECCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHCCCCHHHHHCCCHH
T ss_conf 99607999965585004899979977679978754778808847999999728988833188887587617877426513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~f~~~~~~iltdsGg~q~~sl~~~~~~~~~gv~f~s~~~g~~~~ltpe~~i~~q~~ig~DI~~~Ldd~~~~~~~~~~~~~ 160 (372)
T d1r5ya_ 81 SFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDGSRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAAS 160 (372)
T ss_dssp HHHTCCSCEEEECSHHHHC-CC-CCEEETTEEEC---------CBCHHHHHHHHHHHTCSEEECCCCCCCSSCCHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 34204565200247654323223455577885353226872111000779999985088467522446653101678899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~rt~~w~~~~~~~~~~~~~~~~~~~lfgivqGg~~~dlR~~s~~~l~~~~~~G~aiGgl~~~~~~~~~~~~v~~~~~~ 240 (372)
T d1r5ya_ 161 SMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVPM 240 (372)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHCEEEEEECCTTCHHHHHHHHHHHHHHCCSEEEECSCSSSSCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99999999999999875055667666321131541265688889999986213732122445675067788899850200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 Lp~~kPr~l~Gvg~P~~il~~V~~GvD~FD~~~p~r~Ar~G~alt~~g~~~l~~~~~~~d~~Pl~~~C~C~~C~~~sraY 320 (372)
T d1r5ya_ 241 LPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAY 320 (372)
T ss_dssp SCTTSCEEETTCCSHHHHHHHHTTTCCEEECSHHHHHHHTTEECCTTCCEETTSGGGTTCCSCSSSSCCSHHHHHCCHHH
T ss_pred CCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCEEECCCCEEECCCCCCCCCCCCCCCCCCHHHCCCCHHH
T ss_conf 12011022047898789888360589954543113111136157259832321232335689869898992325159999
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------5
Q 000920 1082 ---------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------~ 1082 (1223)
.
T Consensus 321 l~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~f~~~y~ 372 (372)
T d1r5ya_ 321 IHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARYF 372 (372)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 9877638836899999999999999999999999985999999999999649
|
| >d1qlpa_ e.1.1.1 (A:) Antitrypsin, alpha-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Serpins superfamily: Serpins family: Serpins domain: Antitrypsin, alpha-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=28021.31 Aligned_cols=1 Identities=100% Similarity=-0.660 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~Fa~~l~~~l~~~~~~~N~v~SP~si~~~La~l~~Ga~g~T~~el~~~L~~~~~~~~~~~~~~~~~~~~~~ 80 (372)
T d1qlpa_ 1 FNKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQIHEGFQELLRT 80 (372)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHCSSSCEEECHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 93220769999999999986129798299878999999999998546799999999709998778689999999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~l~~~n~i~~~~~~~l~~~f~~~~~~~f~~~~~~~df~~~~~~~~~iN~wv~~~T~g~i~~~~~~~~~~t~l 160 (372)
T d1qlpa_ 81 LNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVF 160 (372)
T ss_dssp HSCSSCCCCEEEEEEEEEETTCCBCHHHHHHHHHTSCCEEEEECTTSHHHHHHHHHHHHHHHTTTSSCSCCCCCCTTCCE
T ss_pred HHCCCCCHHHHHHEEEEECCCCCCCHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 53247614451010023316776478999999987275241455444699999999999998579875545678974155
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~lina~~f~~~W~~~F~~~~t~~~~F~~~~~~~~~V~mm~~~~~f~~~~~~~l~~~~~~lp~~~~~~~~il~~~~~~l~~ 240 (372)
T d1qlpa_ 161 ALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFLPDEGKLQH 240 (372)
T ss_dssp EEEEEEEECCCBSSCCCGGGCEEEEEESSSSCEEEEEEEEEEEEEEEEEETTTTEEEEEEEETTTEEEEEEEECTTCHHH
T ss_pred HHHHHHEEECCCCCCCCHHCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCHHH
T ss_conf 54323213043113566210445654036885489750000153111014667869995256777259999778679899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 l~~~L~~~~l~~~~~~~~~~~v~v~lPkF~i~~~~dl~~~L~~lGl~~~F~~~ad~~~i~~~~~l~vs~v~q~~~i~v~E 320 (372)
T d1qlpa_ 241 LENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGVTEEAPLKLSKAVHKAVLTIDE 320 (372)
T ss_dssp HHHHCCHHHHHHHHHCCCCEEEEEEEECEEEEEEEEHHHHTGGGTCCGGGSTTCCCTTTBSSSCCCCCEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCHHHHHHHCCCHHHHCCHHHHCCCCCCCCCEEEEEEEEEEEEECC
T ss_conf 98764599999998735644789998789985211577877755946554225453176788981566378899999878
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------5
Q 000920 1082 ---------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~Gteaaa~t~~~~~~~s~~~~f~~drPFlf~I~~~~t~~iLf~G~v~~Pt~~ 372 (372)
T d1qlpa_ 321 KGTEAAGAMFLEAIPMSIPPEVKFNKPFVFLMIEQNTKSPLFMGKVVNPTQK 372 (372)
T ss_dssp CSSSSCCCCCCCCCCSSCCCEEECCSCEEEEEEETTTCCEEEEEEESCTTCC
T ss_pred CCCCHHHHHEEECCCCCCCCEEEECCCEEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 8400323210102357899759926998999999899939999992799899
|
| >d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Bacteriophage T4 [TaxId: 10665]
Probab=100.00 E-value=0 Score=28020.80 Aligned_cols=1 Identities=0% Similarity=0.438 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~fytnv~~~gn~il~rg~~~~G~r~~~~~~f~Py~y~~~~~~~~~ksl~G~~v~~v~f~s~~~~r~~~~~~~~~~~~~~ 80 (372)
T d1noya_ 1 DEFYISIETVGNNIVERYIDENGKERTREVEYLPTMFRHCKEESKYKDIYGKNCAPQKFPSMKDARDWMKRMEDIGLEAL 80 (372)
T ss_dssp CCEEEEEEEETTEEEEEEECTTSCEEEEEEECCCSEECGGGGTCSSCTTTTCCCCCEECSSHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCEEEEEECCEEEEEEEECCCEEEEEEECCEEEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEE
T ss_conf 98661369999999999996599799999656058999858997858359908877857999999999997256663464
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~die~~~~~~~~~~~~~~~i~~I~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 160 (372)
T d1noya_ 81 GMNDFKLAYISDTYGSEIVYDRKFVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVFDLLNSMYGSVSKWDA 160 (372)
T ss_dssp HHHHHHHHHHHHHTCSCCCCCGGGCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCSSCCCCCCCH
T ss_pred ECCCCCEEEHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHEEECCCCEEEEEEECCCCCCCCCCCCC
T ss_conf 02343413312316545556623225773022002346688631010000222144159879999962656566556555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~E~~lL~~F~~~~~~~dPDii~G~N~~~FD~pYL~~R~~~~~~~~~~~~~~~ 240 (372)
T d1noya_ 161 KLAAKLDCEGGDEVPQEILDRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSP 240 (372)
T ss_dssp HHHHSCGGGTCCCCCHHHHTTEEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 55433222346665545668759998099999999999999872888799970678616799999987456310111221
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~sy~L~~v~~~~l~~~K~~~~~~l~~~~~~d~~~l~~Yn 320 (372)
T d1noya_ 241 IGRVKSKLLQNMYGSKEIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQRYISYN 320 (372)
T ss_dssp TSCEEEEECCGGGCSCEEEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHHHHHHHHHHHH
T ss_pred CCCCCCEEEECCCCCCEEEEECCCEEEEEEHHHEECCCCCCHHHHHHHHEEECCCCCCCCCCHHHHHHHHHCHHHHHEEC
T ss_conf 26521001101356522564033148975101200002330024344310001146777742249999874925702201
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------5
Q 000920 1082 ---------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------~ 1082 (1223)
.
T Consensus 321 i~D~~L~~~L~~kl~~i~~~~~la~~~gvp~~~v~~~~~~~~~~~~~~l~~~ 372 (372)
T d1noya_ 321 IIDVESVQAIDKIRGFIDLVLSMSYYAKMPFSGVMSPIKTWDAIIFNSLKGE 372 (372)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHTCCGGGGGCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 9988999999998757999999999989398993749999999999986259
|
| >d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Arginase/deacetylase superfamily: Arginase/deacetylase family: Histone deacetylase, HDAC domain: HDAC homologue species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=28020.55 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~k~~li~~~d~~~~~~g~~HPe~p~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~ 80 (372)
T d1c3pa_ 1 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVPKG 80 (372)
T ss_dssp CCEEEEECGGGGGSCCCTTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCCTT
T ss_pred CEEEEEECHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCC
T ss_conf 90899968201587897843959799999999999769987880771898999999871899999999974544467522
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~p~~~~~~~~a~~~~g~~~~a~~~~~~g~~a~~ppGG~HHA~~~~a~GFC~fNnvAiaa~~l~~~~~~R 160 (372)
T d1c3pa_ 81 AREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKR 160 (372)
T ss_dssp HHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTCEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCC
T ss_conf 31014688767878889999998753358897653224542241246534421024313640460999999998744674
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 V~ivD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~~p~~tG~~~e~G~~~g~g~~~NiPL~~g~~D~~y~~~~~~~l~p 240 (372)
T d1c3pa_ 161 ILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEI 240 (372)
T ss_dssp EEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 47874345677762577761477543000257777788888772236787665412414488655628999999986799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~f~Pd~IvvsaG~D~~~~Dplg~l~lt~~~~~~~~~~~~~~~~~~~~vleGGY~~~~~a~~~~~~~~~l~g~~~~~~ 320 (372)
T d1c3pa_ 241 VKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREVPEK 320 (372)
T ss_dssp HHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCCCCHHHHHHHHHHHHHHHHTCCCCSS
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99866976899978816677686568868888999999999985899699975878588999999999999829999845
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------5
Q 000920 1082 ---------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 372 (372)
T d1c3pa_ 321 LNNKAKELLKSIDFEEFDDEVDRSYMLETLKDPWRGGEVRKEVKDTLEKAKA 372 (372)
T ss_dssp CCHHHHHHHHHSCCCCSSTTCCCGGGGGCSSCCCCCCCCCHHHHHHHHHHHC
T ss_pred CCHHHHHHHCCCCHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 6877887631588777424467033200247855535778899999998509
|
| >d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Germin/Seed storage 7S protein domain: Oxalate decarboxylase OxdC (YvrK) species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=28020.07 Aligned_cols=1 Identities=0% Similarity=-1.091 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~g~~~~gp~~~~~~~~~~d~~~~~~td~g~~~~~~~~f~~~~~~~~~gg~~r~~~~~~lp~~~~~a~~~~~L~ 80 (372)
T d1j58a_ 1 PQPIRGDKGATVKIPRNIERDRQNPDMLVPPETDHGTVSNMKFSFSDTHNRLEKGGYAREVTVRELPISENLASVNMRLK 80 (372)
T ss_dssp CCSEETTEECCCCSCCCHHHHHHCHHHHSCCTTCBSCCCCCEECGGGSCCEEETTEEEEEECTTTCTTCSSCEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEHHHCHHHHHHHHEEEEEC
T ss_conf 98604899998889877666531864458997766755105642133544236797147864443800331100589988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 pga~~~pH~H~~ae~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P~G~~H~i~n~~dg~e~l~vf~~~~~~~~~~f~ 160 (372)
T d1j58a_ 81 PGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDDGSFSENSTFQ 160 (372)
T ss_dssp TTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEEEEEEEEEESCTTCCGGGEEE
T ss_pred CCCCCCCCCCCCCCEEEEEECEEEEEEEECCCCEEEEEECCCCEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEE
T ss_conf 99676873637643899995779999994899489988536988998999779997179995899997788866653043
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~p~evLa~af~v~~~~~~~i~~~e~~i~~~~~p~~~~~~~~~~~~g~~~~~~~~~l~~q~P~~~~gG~~~~~d 240 (372)
T d1j58a_ 161 LTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPYPFTYRLLEQEPIESEGGKVYIAD 240 (372)
T ss_dssp HHHHHHTSCHHHHHHHHTCCTGGGTTSCSSCCSEECCCCCCCHHHHCCCCTTCCCSSCSEEEGGGSCCEECSSEEEEEES
T ss_pred ECCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEC
T ss_conf 10121359878998761999899863431223312456887423454147788998763230224688415774679926
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~fp~~~~is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~~~g~~~t~~l~~GDv~~iP~g~~H~i~N~g~e 320 (372)
T d1j58a_ 241 STNFKVSKTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDE 320 (372)
T ss_dssp TTTSTTCCSCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEECTTCBEEEEECSSS
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECEEEEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCC
T ss_conf 33477667506999998899645887799972999999790999998579806899825985899899974999987999
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------5
Q 000920 1082 ---------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~l~~l~vf~s~~~~~i~~~~~l~~~P~~vv~~~~~~~~e~~~~l~~~k~~vv 372 (372)
T d1j58a_ 321 PLVFLEIFKDDHYADVSLNQWLAMLPETFVQAHLDLGKDFTDVLSKEKHPVV 372 (372)
T ss_dssp CEEEEEEESSSSCCCEEHHHHHHTSCHHHHHHHHTCCHHHHTTCCSSCCSBC
T ss_pred CEEEEEEECCCCCCEEEHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCCC
T ss_conf 8899999789996545687876549999999885969999998875687669
|
| >d1vkpa_ d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Porphyromonas-type peptidylarginine deiminase domain: Agmatine iminohydrolase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=28017.75 Aligned_cols=1 Identities=0% Similarity=-0.293 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~tp~~~gfrmPaEwe~~~~~~l~wP~~~~~w~~~~~~~~~~~~~i~~~Ia~~e~V~vl~~~~~~~~~~~~~~~nV~~~~ 80 (372)
T d1vkpa_ 1 RESPAEHGYYMPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCASPAQWENARKQLPEDIRVVE 80 (372)
T ss_dssp CCCGGGGTCBCCCTTSCEEEEEECCCCCTTTSTGGGHHHHHHHHHHHHHHHTTSCEEEEECTTTHHHHHHHSCTTSEEEE
T ss_pred CCCHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCEEEE
T ss_conf 97935549976898563615999868998621345556899999999997389849999797999999975746728999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~dD~W~RD~GPifv~~~~~~~~~~~~~~~~~vdf~FN~wG~k~~~~~~~~~~d~~~~~~ia~~~~~~~~~~~lvlEGG 160 (372)
T d1vkpa_ 81 MSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGG 160 (372)
T ss_dssp CCCSSCCHHHHSCEEEECCC-------CCSEEEEEEECCTTTHHHHSSBSCCTTHHHHHHHHHHHHTCCEEEEEEECCGG
T ss_pred CCCCCHHHHCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
T ss_conf 15898788614877998088642334678557860201366655555421345677999987412168744567166389
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~ie~dG~GtlltTe~clln~nRNP~~sk~~ie~~Lk~~lGv~~viwl~~g~~~~DdTdGHID~~arFi~~~til~~~~~d 240 (372)
T d1vkpa_ 161 SIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVVLLSWTDD 240 (372)
T ss_dssp GEEECSSSEEEEEHHHHTCTTTCTTSCHHHHHHHHHHHHCCCEEEEESCCCTTCTTTTCCGGGTEEEEETTEEEEEECCC
T ss_pred CEEECCCCCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHEEEECCCCEEEEEECCC
T ss_conf 77989996299756782077889998999999999986297559997670027988765500058971799079873288
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~y~~~~~~~~~L~~~~d~~g~~~~ii~lp~p~~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~VivP 320 (372)
T d1vkpa_ 241 ETDPQYERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAP 320 (372)
T ss_dssp TTSTHHHHHHHHHHHHHTCBCTTSCBCEEEEEECCSCCBCCHHHHHTSCCCSSBCCCCTTCBCCCCTTCCEEETTEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEC
T ss_conf 76855899999999999887505884317983034540003200145334666554568988655347999999999995
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------5
Q 000920 1082 ---------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~ygd~~~D~~A~~~l~~~fP~r~Vi~Id~~~~i~~~gG~iHCiT~q~Pa~~~ 372 (372)
T d1vkpa_ 321 QFGDPIRDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPT 372 (372)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTSEEEEETTTHHHHTTTCCTGGGEEEEECCCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 7989430799999999988898799827889998579853575777779999
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=28016.69 Aligned_cols=1 Identities=0% Similarity=1.068 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~p~~~a~I~g~g~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~ri~~~tGI~~R~~~~~~~~~~~~~~~~~~~~ 80 (372)
T d1teda_ 1 AQLPPAPPTTVAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPAT 80 (372)
T ss_dssp CCCCCCCCCCEEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSC
T ss_pred CCCCCCCCCCEEEEEEEEEECCCEEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHCCCC
T ss_conf 99897999844899988996799178399999999860678177899999998359863514516543461445414887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~r~~~~~e~~~~la~~Aa~~aL~~ag~~~~dId~lI~~t~t~~~~P~~a~~v~~~LGl~~~~~~~~~~~~gC~g~~~a 160 (372)
T d1teda_ 81 IRDRMHLFYEHAVPLAVDVSKRALAGLPYRAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNA 160 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGEEEEEEEESSCCCSSCHHHHHHHHHTCCTTCEEEEEESCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
T ss_conf 88888877737999999999999997599988998899964689888668899876514687625766004674179999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 L~~A~~~l~sg~~~~~LVV~~E~~s~~~~~~d~~~~~~~~~lfGDGAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (372)
T d1teda_ 161 LGTATNYVRAHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTE 240 (372)
T ss_dssp HHHHHHHHHHSTTCEEEEEEEEECGGGCCCCSSHHHHHHHHHBCEEEEEEEEEEECTTSCCCTTCEEEEEEEEEECTTCT
T ss_pred HHHHHHHHHCCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 99999998559976521653112002104777613565655413632047750477645567750587035642168876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~did~~i~Hq~~~~i~~~i~~~Lgl~~ek~~~s~~~l 320 (372)
T d1teda_ 241 DGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSVRSLGISAELAAQSWDVL 320 (372)
T ss_dssp TSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHHTTCCGGGCSCEEECCSCHHHHHHHHHHHTCCGGGGHHHHHHH
T ss_pred CCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 55456778776320014777999998889999987876399878742232247659999999998198978816568888
Q ss_pred ---------------------------------------------------C
Q ss_conf ---------------------------------------------------5
Q 000920 1082 ---------------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~GN~~sasip~~L~~~l~~g~~~~g~d~vll~~fG~G~s~~~~ll~~~~~ 372 (372)
T d1teda_ 321 ARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIRR 372 (372)
T ss_dssp HHHCBCTHHHHHHHHHHHHHSCSSSSSSEEEEEEEEETTTEEEEEEEEECCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHEEECC
T ss_conf 4047748879999999999838878899889999995899589876325229
|
| >d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid herpesvirus 4, MuHV-4 [TaxId: 33708]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Viral chemokine binding protein m3 superfamily: Viral chemokine binding protein m3 family: Viral chemokine binding protein m3 domain: Viral chemokine binding protein m3 species: Murid herpesvirus 4, MuHV-4 [TaxId: 33708]
Probab=100.00 E-value=0 Score=27949.77 Aligned_cols=1 Identities=0% Similarity=-0.261 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 hssgvstqsvdlsqikrgdeiqahcltpaetevtecagilkdvlsknlhelqglcnvknkmgvpwvsveelgqeiitgRL 80 (371)
T d1mkfa_ 1 HSSGVSTQSVDLSQIKRGDEIQAHCLTPAETEVTECAGILKDVLSKNLHELQGLCNVKNKMGVPWVSVEELGQEIITGRL 80 (371)
T ss_dssp CCSEEEECCCCTTTSTTHHHHHHHHSSSCCSSTHHHHHHHHHHHHHCTTGGGGGCSEEEEEEEECEEEGGGTEEEEEECC
T ss_pred CCCCCCCCCCCHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCC
T ss_conf 98774343323888445425665207821003677778899987642887751430244468846569884125500676
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 P~Ps~~~~~~~~~vrVLV~AEs~tpee~P~~~~~A~~~m~T~~~~~~LsD~N~~F~s~~~~vW~i~i~k~~VD~~mLT~A 160 (371)
T d1mkfa_ 81 PFPSVGGTPVNDLVRVLVVAESNTPEETPEEEFYAYVELQTELYTFGLSDDNVVFTSDYMTVWMIDIPKSYVDVGMLTRA 160 (371)
T ss_dssp CCSSCCCCTTSCEEEEEEEEECCCCSSCCSSCCCEEEEEECSSCEEEECGGGEEEEETTEEEEEEEEEGGGSSTTCEEEE
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHEEEEEEEEEECCCCEEEEECCEEEEEEECCHHEECHHHHHHH
T ss_conf 77755787667648999995179987880788765441044554785024643787400279999646001122143355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~FL~~~P~~k~T~mi~Y~~TFTWCGeigai~e~~~P~PS~~A~~PVC~~~~RY~~~kF~~~DGC~~Et~~~~~s~i~P~~ 240 (371)
T d1mkfa_ 161 TFLEQWPGAKVTVMIPYSSTFTWCGELGAISEESAPQPSLSARSPVCKNSARYSTSKFCEVDGCTAETGMEKMSLLTPFG 240 (371)
T ss_dssp EESSCCTTCEEEEEEEEETTEEEEEEEEEECTTSCCBCCSEEEEETTSSGGGGSSSTTTTTTTCCGGGTSCCEEECSCTT
T ss_pred HHHHHCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCCCCCCEEECCCC
T ss_conf 67754767608998436565053403254368778997610038542004665347524136743000555640555578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~P~~qa~mNTC~C~~KY~~~~L~~~~~i~i~~ia~~~~~~~P~YVm~~YF~St~~N~~~~s~~L~~C~~~mtsH~G~~~~ 320 (371)
T d1mkfa_ 241 GPPQQAKMNTCPCYYKYSVSPLPAMDHLILADLAGLDSLTSPVYVMAAYFDSTHENPVRPSSKLYHCALQMTSHDGVWTS 320 (371)
T ss_dssp SCSSCEEEESTHHHHHHCSSCCCCCSCEEEEEEECGGGCCSCEEEEEEEECCCCCCTTSCCCCEEEEEEEEEEETTEEEE
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEE
T ss_conf 98440303532058882476577334188876225233467406788750666667668898644899998743673013
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------5
Q 000920 1082 --------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~s~QCP~~~~~G~~q~VL~~~~~pt~~~~iVGvsi~~eGQq~Ri~Y~Gdh 371 (371)
T d1mkfa_ 321 TSSEQCPIRLVEGQSQNVLQVRVAPTSMPNLVGVSLMLEGQQYRLEYFGDH 371 (371)
T ss_dssp CCCSSCCEEEEECSSTTEEEEEECGGGGGGEEEEEEEETTEEEEEESSCCC
T ss_pred EECCCCCEEEEECCCEEEEEEEECCCCCCCEEEEEEEECCCEEEEECCCCC
T ss_conf 313557556730676068999982466764056999974700021012589
|
| >d1to6a_ c.141.1.1 (A:) Glycerate kinase GlxK {Neisseria meningitidis, (serogroup A) [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Glycerate kinase I superfamily: Glycerate kinase I family: Glycerate kinase I domain: Glycerate kinase GlxK species: Neisseria meningitidis, (serogroup A) [TaxId: 487]
Probab=100.00 E-value=0 Score=27947.74 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 MkiliApDsFKgslsA~ea~~ai~~g~~~~~p~~~~~~~P~aDGGEGt~dal~~~~~g~~~~~~v~gplg~~v~a~~~~~ 80 (371)
T d1to6a_ 1 MKIVIAPDSFKESLTAQQVAEAIKRGFQQSIADVECLLCPVGDGGEGTVDAIRHSLDLEEKCLQVTGSFGQKEVMRYFQK 80 (371)
T ss_dssp CEEEECCCCBTTTBCHHHHHHHHHHHHHHHCTTCEEEECCCCSSSTTHHHHHHTTSCCEEEEEEEECTTSSEEEEEEEES
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCEEEEEEEECCCCCCEEEEEECC
T ss_conf 90999943888862899999999999998599988999730648543999999863997999999899998157899637
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~tAvIE~A~asGL~l~~~~~r~p~~~tT~G~GelI~~Al~~G~~~iilglGGSAT~DgG~G~L~ALG~~f~D~~g~~l~ 160 (371)
T d1to6a_ 81 EQLALFEVADLVGLGKIPLEKRNPLQIQTRGIGELIRHLISQEIKEIYIGVGGTASNDGGIGIAAGLGYQFYDEDGNALP 160 (371)
T ss_dssp SSEEEEETHHHHBGGGSCTTSCCTTSCCCHHHHHHHHHHHHTTCCEEEEEECSBCCCSTTHHHHHTTTCEEECTTSCBCC
T ss_pred CCEEEEHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCEECCCCCCCC
T ss_conf 87543016663676303887777112246119999999997699769997158636616789999614536888999888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~g~~L~~i~~id~~~~~~~l~~v~~~ia~DV~npL~G~~GAa~vfgpQKGa~~~~v~~le~~l~~~a~~~~~~~~~~~g 240 (371)
T d1to6a_ 161 ACGQSLLNLASVSTENRYKIPEDVHIRILADVVSPLCGHQGATYTFGKQKGLDSTMFEVVDQAIQDFYEKVSPATLKLKG 240 (371)
T ss_dssp SSGGGGGTCCEEECSSCCCCCTTCEEEEEESCCCCSSSTTSHHHHHSGGGTCCGGGHHHHHHHHHHHHHHHCGGGGGCTT
T ss_pred CCCHHHHHHHCCCCCCCCCHHHCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCC
T ss_conf 86153675002662368711342849999556765547878645650445887899999999999999984311015678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~gaAGG~~~~l~~~l~a~~~~G~~~v~~~~~l~~~i~~aDlVITGEG~~D~QSl~GK~p~~va~~ak~~~pviai~G~v~ 320 (371)
T d1to6a_ 241 AGAGGGIAGGLCAFAQASIVSGIDTCLDLIDFDKKVSDVDLVIVGEGRLDRQSLAGKAPIGVAKRTPVGVPVVAICGSLV 320 (371)
T ss_dssp TTTTTTHHHHHHHHSCCEEEEHHHHHHHHTTHHHHTTTCSEEEECCSEECSTTTTTCHHHHHHTTSCTTCCEEEEESEEC
T ss_pred CCCHHHHHHHHHHHHCCEECCCHHHHHHHHCHHHHHCCCCEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 63102578999999588846509999988599978356998997887552321265767999999767998899977557
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------5
Q 000920 1082 --------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~Gi~~~~si~~~~~~l~~a~~~a~~~L~~~a~~i~r~l~~~~~ 371 (371)
T d1to6a_ 321 EDLPSLPFENIQAAFSILEKSEPLEDSLKNASLYLEHTASNIGHLLNMPKI 371 (371)
T ss_dssp TTCCCSSBTTEEEEEECCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 886678754962999758899999999998999999999999999842379
|
| >d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=27947.48 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 MnsfG~~lr~ttfGESHG~alg~vidG~PaG~~i~~~~I~~~L~RR~pG~~~~~t~R~E~D~veilSGv~~G~TtGsPI~ 80 (371)
T d1r53a_ 1 MSTFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRPGQSKLSTPRDEKDRVEIQSGTEFGKTLGTPIA 80 (371)
T ss_dssp CCEECSSSEEEEECCTTSSEEEEEEECCCTTCBCCGGGTHHHHHTTCC------------CCCEECSSEETTEECSSCEE
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCEE
T ss_conf 98776534898415478884489980508588838999999996459999998866899984899243208978455207
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~kyg~~d~~gggrsSaReTa~rvaaGaia~~~L~~~~gI~v~s~V~~IG~ 160 (371)
T d1r53a_ 81 MMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGE 160 (371)
T ss_dssp EEEEC-----------------------------------------CCCHHHHHHHHHHHHHHHHTTCCEEEEEEEEETT
T ss_pred EEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECC
T ss_conf 88814532310010133324668741776764486533565415688899999999999999998489799999998611
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 i~~~~~~~d~~~~~~~~~~~~~~~~~~~~vrc~D~~~~~~m~~~I~~ak~~gDSlGGivev~~~gvP~GLG~p~fdkLda 240 (371)
T d1r53a_ 161 IKMNRDSFDPEFQHLLNTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKLEA 240 (371)
T ss_dssp EECCCCTTCHHHHHHHHHCCHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHTTCCCCEEEEEEEESCCTTCSBTTTBCHHH
T ss_pred EECCCCCCCHHHHHCCCHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCH
T ss_conf 77154345612332214465655553196107886888999999999972599755089999970589877720044145
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~LA~A~mSIpAVKgVEfG~GF~~a~~~GSe~nD~~~~~~~~g~~~~~tN~aGGi~GGiSnG~pi~~rva~KP~sSi~~~q 320 (371)
T d1r53a_ 241 MLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNGENIYFSVPFKSVATISQEQ 320 (371)
T ss_dssp HHHHHHHTSTTBCCCEETTTTGGGGSCHHHHHCSBC--------CBCCCCSCSEETTEECSSCEEEEEEECCC-------
T ss_pred HHHHHHHCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 88887742410025650456117645562247762205788864245688777546764896069999857810046877
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------5
Q 000920 1082 --------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~Tvd~~~~~~~~~~~gRhDpc~vpra~pV~Eam~alvlad~~L~~~~~d~~ 371 (371)
T d1r53a_ 321 KTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTALVLADALLIQKARDFS 371 (371)
T ss_dssp ----------------CCCSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 547757978776106988981726548999999999999999998516789
|
| >d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=0 Score=27946.79 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~rGL~gv~v~~T~Is~idg~~G~L~YRG~~i~dLa~~~sfEeVa~LL~~G~lP~~~el~~f~~~l~~~~~lp~~~~~~~ 80 (371)
T d1aj8a_ 1 LAKGLEDVYIDQTNICYIDGKEGKLYYRGYSVEELAELSTFEEVVYLLWWGKLPSLSELENFKKELAKSRGLPKEVIEIM 80 (371)
T ss_dssp CCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCCCCCCEEEEEECCEEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 99777998162686712768988799988769998646999999999977979899999999999997168988999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~p~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~a~~~~i~~~~~~~~~~~~~~~p~~~~~~a~~~l~~~ 160 (371)
T d1aj8a_ 81 EALPKNTHPMGALRTIISYLGNIDDSGDIPVTPEEVYRIGISVTAKIPTIVANWYRIKNGLEYVPPKEKLSHAANFLYML 160 (371)
T ss_dssp HHSCTTCCHHHHHHHHHHHHHHHSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 86114641267777776410110100124310146788899999999999999999837998879860056899987652
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~g~~~~~~~~~~l~~~Lvl~aDHg~n~Stfa~r~vaSt~~d~~~a~~ag~~al~G~~hgga~~~~~~~~~~~~~~~~~~~ 240 (371)
T d1aj8a_ 161 HGEEPPKEWEKAMDVALILYAEHEINASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAIKQFMEIGSPEKVEE 240 (371)
T ss_dssp HSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHHCSGGGHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 38878879999999999983677777620656654115775202888888871542011016799999985065420699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~v~~~l~~~~~i~GfGH~vy~~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pNvd~~~~~l~~~lg~p 320 (371)
T d1aj8a_ 241 WFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASKLGDKKLFEIAERLERLVEEYLSKKGISINVDYWSGLVFYGMKIP 320 (371)
T ss_dssp HHHHHHHHTCCCTTBCCSSCSSCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCCBCTTTTHHHHHHTTTCC
T ss_pred HHHHHHHCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99998624776544472211466606889999887630003568999999999987421798838188999999983998
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------5
Q 000920 1082 --------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~~~lf~~~R~~G~~AH~~Eq~~~~~l~RP~~~YvG~~~~~~~~i~~r~ 371 (371)
T d1aj8a_ 321 IELYTTIFAMGRIAGWTAHLAEYVSHNRIIRPRLQYVGEIGKKYLPIELRR 371 (371)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEEEECSCCCBCCCCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCHHHCC
T ss_conf 566669999999999999999998679973855401699899987767659
|
| >d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Hyaluronate lyase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=27946.37 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~d~y~~lr~~w~~~~~G~~~~~~~d~~~~~~~~~l~~~a~~~~~~~~~~~~~~~lw~dl~~~~~~~~~~~~~~rL~~mA 80 (371)
T d1n7oa1 1 VKDTYTDRLDDWNGIIAGNQYYDSKNDQMAKLNQELEGKVADSLSSISSQADRIYLWEKFSNYKTSANLTATYRKLEEMA 80 (371)
T ss_dssp CCSHHHHHHHHHHHHHTCGGGCCTTCHHHHHHHHHHHHHHHHHHHHSCCSSSCSSSCGGGCCTTSTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 96489999999999863745677687899999999999999999872135677777789987775147999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~ay~~pgs~lY~d~~l~~~I~~al~~l~~~~y~~~~~~~gNWw~~~Ig~P~~l~~~lill~~~l~~~~~~~~~~~i~~~~ 160 (371)
T d1n7oa1 81 KQVTNPSSRYYQDETVVRTVRDSMEWMHKHVYNSEKSIVGNWWDYEIGTPRAINNTLSLMKEYFSDEEIKKYTDVIEKFV 160 (371)
T ss_dssp HHHTCTTSTTTTCHHHHHHHHHHHHHHHHHTSSTTCCCCSCHHHHHTHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 99859998553699999999999999997089888888898303640758999999988311169999999999999867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 p~p~~~~~~~~~~~~~TGaN~vd~a~~~i~~glL~~d~~~v~~a~~~i~~v~~~v~~gdG~~~DgSf~qH~~~~Y~G~YG 240 (371)
T d1n7oa1 161 PDPEHFRKTTDNPVKALGGNLVDMGRVKVIAGLLRKDDQEISSTIRSIEQVFKLVDQGEGFYQDGSYIDHTNVAYTGAYG 240 (371)
T ss_dssp CCTTEECTTSSSCEECCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGGSCCSSSSEECTTSCEEETTTEECTTTHH
T ss_pred CCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCEECCCCEECCCCEECCCCCH
T ss_conf 88212035677866064116999899999999986799999999999887741102688440377601257622167513
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~l~~~~~~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~~~~G~~~d~v~GR~ISR~~~~~~~~g~~~~~~~~~l~~~~ 320 (371)
T d1n7oa1 241 NVLIDGLSQLLPVIQKTKNPIDKDKMQTMYHWIDKSFAPLLVNGELMDMSRGRSISRANSEGHVAAVEVLRGIHRIADMS 320 (371)
T ss_dssp HHHHHHHHHHHHHHTTSSSCCCHHHHTHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999999999997799888897899999999995433010555015557886225788666414899999999985149
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------5
Q 000920 1082 --------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~~~~~~~~iK~~i~~~~~~~~~~~~~~~~~~~~~~~ll~d~~i~~~p~ 371 (371)
T d1n7oa1 321 EGETKQRLQSLVKTIVQSDSYYDVFKNLKTYKDISLMQSLLSDAGVASVPR 371 (371)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSSCGGGGCCSHHHHHHHHHHHHCTTSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999999999999999966875452225345789999999865898898998
|
| >d1c8ba_ c.56.1.2 (A:) Germination protease {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: HybD-like family: Germination protease domain: Germination protease species: Bacillus megaterium [TaxId: 1404]
Probab=100.00 E-value=0 Score=27945.93 Aligned_cols=1 Identities=0% Similarity=-0.959 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 m~~~~~l~~y~iRTDLAlEa~E~~~e~~~~~~~~~ei~GV~~~e~~~~~ikiT~V~I~e~Ga~~mgKp~G~YiTiEap~l 80 (371)
T d1c8ba_ 1 MEKELDLSQYSVRTDLAVEAKDIALENQPKPNNQSEIKGVIVKEKEEQGVKISMVEITEEGAEAIGKKKGRYVTLESVGI 80 (371)
T ss_dssp CCCCCCCCCCCCCCCCTTHHHHHHHHHCCC---------CCCSEEEEEEEETTEEEEEEEECHHHHTTTTSCCEEEEEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEEEECCHHHHHHCCCCCCEEEEECCCC
T ss_conf 98655521143537878988998865320113467668769888862986899999782689985899851799846877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~D~~~~~e~~~~v~a~~l~~l~~~~~~~~~~~vLVVGLGN~~VTPDALGP~vv~~l~VTRHL~~~~p~~~~~g~r~Vs 160 (371)
T d1c8ba_ 81 REQDTEKQEEAMEEVFAKELNFFIKSLNIPDDASCLVVGLGNLSVTPDALGPKAVDNLLITRHLFELQPESVQDGFRPVS 160 (371)
T ss_dssp CCCSSSSSSHHHHHHHHHHHHHHHHHTTCCTTCCEEEEECSCSSSGGGCHHHHHHTTCCCCHHHHHHSCCSSCSSCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHEECCEEEEHHHHHHCCHHHCCCCCEEE
T ss_conf 75678899999999999999999863178988817999688877786563701113363343045547254507871256
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 aIaPGVmg~TGiET~EIIkgiVek~kPD~VIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R~~l~~etLGVPVIAI 240 (371)
T d1c8ba_ 161 AIVPGVMGMTGIETSDIIFGVVKKVNPDFIIAIDALAARSIERVNATIQISDSGIHPGSGVGNKRKEISYETLGIPVIAI 240 (371)
T ss_dssp EECSGGGCCCSSCHHHHHHHHHHHHCCSEEEEEEEECCSSGGGSSSEEEEETTCBCSCSSSSCCCCBSSSCCC-------
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECHHHCCCHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHCCCCEEEE
T ss_conf 88587550344249999999987518989999601013752333564786677858887767555637987829988997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 GVPTVVdAatI~~Dtid~~~~~~~~~~~e~~~~s~~l~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ek~~Li 320 (371)
T d1c8ba_ 241 GIPTVVDAVSITSDTIDFILKHFGREMKEQGKPSKSLLPSGMTFGEKKKLTEDDLPNEEQRQTYLGMIGTLPDEEKRRLI 320 (371)
T ss_dssp --CCCEEEEEEECCEESCCCHHHHTTTTTCC---------------------------------CCCCSSCCCTTHHHHH
T ss_pred CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 68806601998789999999987543201346531113332333422222222343112204688776246889999999
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------5
Q 000920 1082 --------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~EvL~P~~~~l~VTPKeID~~I~~~s~iIs~giN~ALhp~i~~e~~~~y~~ 371 (371)
T d1c8ba_ 321 HEVLAPLGHNLMVTPKEVDMFIEDMANVVAGGLNAALHHEVDQENFGAYTH 371 (371)
T ss_dssp HHHTCSSCTTEEEEETTHHHHHHHHHHHHHHHHGGGGSCCCCSCCCCSSCC
T ss_pred HHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC
T ss_conf 997572479655675738999999999999898898677888778764339
|
| >d1f1sa1 a.102.3.2 (A:249-619) Hyaluronate lyase {Streptococcus agalactiae [TaxId: 1311]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Hyaluronate lyase species: Streptococcus agalactiae [TaxId: 1311]
Probab=100.00 E-value=0 Score=27945.85 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~d~y~~l~~~w~~~~~G~~~~d~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~~~lw~dl~~~~~s~~~~~~~~rL~~mA~ 80 (371)
T d1f1sa1 1 EDNFTKLLDKWNDVTIGNYVYDTNDSNMQKLNQKLDETNAKNIEAIKLDSNRTFLWKDLDNLNNSAQLTATYRRLEDLAK 80 (371)
T ss_dssp CSHHHHHHHHHHHHHTCGGGCCTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCSCSCGGGCCTTSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 97699999999998638766786677899999999999999998612676656667899977752589999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 aY~~pgs~ly~d~~l~~~I~~aL~~l~~~~y~~~~~~~~~~NWW~~eIg~P~~l~~~lill~d~l~~~~~~~~~~~i~~~ 160 (371)
T d1f1sa1 81 QITNPHSTIYKNEKAIRTVKESLAWLHQNFYNVNKDIEGSANWWDFEIGVPRSITGTLSLMNNYFTDAEIKTYTDPIEHF 160 (371)
T ss_dssp HHTCTTSTTTTCHHHHHHHHHHHHHHHHHTSSTTCCCCTTSCHHHHHTHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 98499985547999999999999999983899876688989861123175799999998720015999999999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~p~p~~~~~~~~~~~~~TGaN~vd~a~~~i~~glL~~d~~~v~~a~~~i~~v~~~v~~gdG~~~DgSfiqH~~v~Y~G~Y 240 (371)
T d1f1sa1 161 VPDAEYFRKTLVNPFKALGGNLVDMGRVKIIEGLLRKDNTIIEKTSHSLKNLFTTATKAEGFYADGSYIDHTNVAYTGAY 240 (371)
T ss_dssp CCCTTEESTTSSCCEECCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCCBSSSSEEBTTSCEEETTTEECTTTH
T ss_pred CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHCCCCEECCCCC
T ss_conf 78813322567886636522699999999999998289999999999876561103578723047661004670006762
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 G~~~l~~~~~~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~~~~g~~~~~v~GR~IsR~~~~~~~~g~~~~~~~~~l~~~ 320 (371)
T d1f1sa1 241 GNVLIDGLTQLLPIIQETDYKISNQELDMVYKWINQSFLPLIVKGELMDMSRGRSISREAASSHAAAVEVLRGFLRLANM 320 (371)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 39999999999999767988888789999999999700456357643565677622478876632799999999987334
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------5
Q 000920 1082 --------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~~~~~~~~~vK~~i~~~~~~~~~~~~~~~~~~~~~~~ll~d~~I~~~p 371 (371)
T d1f1sa1 321 SNEERNLDLKSTIKTIITSNKFYNVFNNLKSYSDIANMNKLLNDSTVATKP 371 (371)
T ss_dssp CCSHHHHHHHHHHHHHHHHCCSSCGGGGCCSHHHHHHHHHHHHCTTSCCCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 989999999999999984587644100645599999999985578888898
|
| >d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Xylanase species: Bacillus stearothermophilus, Xt6 [TaxId: 1422]
Probab=100.00 E-value=0 Score=27940.16 Aligned_cols=1 Identities=100% Similarity=0.703 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~p~l~~~~~~~f~~G~av~~~~l~~~~~~~~~~~~Fn~~t~eN~mKW~~iep~~G~~n~~~aD~~v~~a~~n 80 (371)
T d1r85a_ 1 KPHISALNAPQLDQRYKNEFTIGAAVEPYQLQNEKDVQMLKRHFNSIVAENVMKPISIQPEEGKFNFEQADRIVKFAKAN 80 (371)
T ss_dssp CCCCBGGGSCCHHHHHTTTCEEEEEECGGGGGCHHHHHHHHHHCSEEEESSTTSHHHHCSBTTBCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHCCCEEEEECCHHHCCCHHHHHHHHHHCCEECCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99664255664999860578387843755547988999999866900326467634124779925838899999999987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 gi~vrGH~LvW~~~~P~W~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~I~~v~~rY~g~I~~WDVvNE~~~~~~~~r 160 (371)
T d1r85a_ 81 GMDIRFHTLVWHSQVPQWFFLDKEGKPMVNETDPVKREQNKQLLLKRLETHIKTIVERYKDDIKYWDVVNEVVGDDGKLR 160 (371)
T ss_dssp TCEEEEECSCCSTTCCGGGGBCTTSSBGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEESCBCTTSSBC
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC
T ss_conf 99787767786233354101256666444445422333699999999999999999974897528998731106998733
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~g~dyi~~af~~A~~~~~p~~~L~~Ndy~~~~~~k~~~~~~~v~~l~~~g~pidgIG~Q~H~~~~~~~~~~i~ 240 (371)
T d1r85a_ 161 NSPWYQIAGIDYIKVAFQAARKYGGDNIKLYMNDYNTEVEPKRTALYNLVKQLKEEGVPIDGIGHQSHIQIGWPSEAEIE 240 (371)
T ss_dssp CCHHHHHHTTHHHHHHHHHHHHHHCTTSEEEEEESCTTSTTHHHHHHHHHHHHHHTTCCCCEEEECCEECSSSSCHHHHH
T ss_pred CCCHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 37522115858999999999986687546665145644440258999999999977997441433412367998889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~l~~~a~~Gl~i~ITElDV~~~~~~~~~~~~~~~~~~e~~~~QA~~y~~~~~~~~~~~p~v~git~WG~~D~~sW~~~~ 320 (371)
T d1r85a_ 241 KTINMFAALGLDNQITELDVSMYGWPPRAYPTYDAIPKQKFLDQAARYDRLFKLYEKLSDKISNVTFWGIADNHTWLDSR 320 (371)
T ss_dssp HHHHHHHHTTCEEEEEEEEECSSCSSCCCCSSGGGSCHHHHHHHHHHHHHHHHHHHHTGGGEEEEEESSSSTTSCGGGGG
T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 99999997399237866674167776445766542328999999999999999999638974599986898797446788
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------5
Q 000920 1082 --------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLlfD~~~~pKpAy~ai~d~~ 371 (371)
T d1r85a_ 321 ADVYYDANGNVVVDPNAPYAKVEKGKGKDAPFVFGPDYKVKPAYWAIIDHK 371 (371)
T ss_dssp CCEEECTTSCEECCTTSCCSEEETTCSCCCCSSBCTTSBBCHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 865435545533222222222235677788734689988977999986349
|
| >d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Trichoderma reesei, Endoglucanase I [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Concanavalin A-like lectins/glucanases superfamily: Concanavalin A-like lectins/glucanases family: Glycosyl hydrolase family 7 catalytic core domain: Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) species: Trichoderma reesei, Endoglucanase I [TaxId: 51453]
Probab=100.00 E-value=0 Score=27940.02 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 QQ~Gt~t~E~HP~ltwq~CT~~ggCt~~~g~vV~Danwrw~H~~~~~~c~~gn~~~~~lCpd~~tCa~nC~ldgaDY~~~ 80 (371)
T d1eg1a_ 1 EQPGTSTPEVHPKLTTYKCTKSGGCVAQDTSVVLDWNYRWMHDANYNSCTVNGGVNTTLCPDEATCGKNCFIEGVDYAAS 80 (371)
T ss_dssp CEECSSSCCCCCBCCEEEEETTTEEEEECCEEEECGGGSCEECTTCCBSEETTEECTTTCSSSHHHHHHCEECCCCTTTT
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCEEECCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 98887767548851447515899827723569980573202006986543388655234887566776246557763675
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 GVttsG~sltL~~~~~~~~~~~~~vGsRvYLl~~d~~Yqmf~Llg~EftFdVD~S~lpCGlNgALYfveM~adGg~s~~n 160 (371)
T d1eg1a_ 81 GVTTSGSSLTMNQYMPSSSGGYSSVSPRLYLLDSDGEYVMLKLNGQELSFDVDLSALPCGENGSLYLSQMDENGGANQYN 160 (371)
T ss_dssp TEEECSSEEEEESCEECSSSSEECCCCEEEEECTTSSBCCBCCTTSEEEEEECTTSCCTTEEEEEEEECCCTTTTCCSSC
T ss_pred CEEECCCCEEEEEEEECCCCCCCEECCEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 26951884789999824766532023327997588837888726971688864478875223366665226568966667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~aGA~YGtGYCDAQCp~~~w~~g~~~~g~~G~CC~EmDIwEANs~A~a~TpH~C~~~~CD~~GC~~NpYR~g~~~fyG~G 240 (371)
T d1eg1a_ 161 TAGANYGSGYCDAQCPVQTWRNGTLNTSHQGFCCNEMDILEGNSRANALTPHSCTATACDSAGCGFNPYGSGYKSYYGPG 240 (371)
T ss_dssp CCGGGGTCCCCCTTCCBCSEETTEECTTCCBCCCCEEEEEEECSSCBCBEEECBCSSCBCSSCCCBCTTTTTCTTTSSTT
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66663675323166873332136677578753035401015454134202434568741888867774555786211489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~tVDT~k~fTVVTQF~t~~~t~~G~LtEIrR~YVQ~GkvI~n~~~~~~~~~~~~~~~~~ggl~~mg~al~rGmVLv~SlW 320 (371)
T d1eg1a_ 241 DTVDTSKTFTIITQFNTDNGSPSGNLVSITRKYQQNGVDIPSAQPGGDTISSCPSASAYGGLATMGKALSSGMVLVFSIW 320 (371)
T ss_dssp SSSCTTSCEEEEEEEEETTSSTTSCEEEEEEEEEETTEECCCSSTTCEEECCCSGGGGGTTTHHHHHHHHHCBEEEEEEE
T ss_pred CCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEE
T ss_conf 63026897389988665898664434477579997998902776566644454442336889999888608869999979
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------5
Q 000920 1082 --------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------~ 1082 (1223)
.
T Consensus 321 dd~~~~M~WLDs~~~GpC~~~~g~p~~ve~~~p~a~V~~SNIKfG~I~ST~ 371 (371)
T d1eg1a_ 321 NDNSQYMNWLDSGNAGPCSSTEGNPSNILANNPNTHVVFSNIRWGDIGSTT 371 (371)
T ss_dssp ECTTTTTHHHHBGGGCSBCTTTTCHHHHHHHCTTCEEEEEEEEEESTTTCC
T ss_pred ECCCCCCEEECCCCCCCCCCCCCCHHHHHHCCCCCEEEEEECEECCCCCCC
T ss_conf 279998523058988888888898668623289977998727583787889
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=0 Score=27936.34 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~ 80 (371)
T d1k8kc_ 1 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 80 (371)
T ss_dssp CEEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEE
T ss_conf 95789998838999989999999994889899998889978999995588998889999799999999979993999862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s 160 (371)
T d1k8kc_ 81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160 (371)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 03321100122322110001111111211000002576302544203343311100101112221111111111100013
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~ 240 (371)
T d1k8kc_ 161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 240 (371)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEE
T ss_conf 47679998401576431001221111111101124404766747898751233210000147860588641012100000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
T d1k8kc_ 241 SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 320 (371)
T ss_dssp CSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred CCCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEE
T ss_conf 14665203654699979999819926787760898628872020676542124622001685065205871245566141
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------5
Q 000920 1082 --------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~~~~~~l~~~ 371 (371)
T d1k8kc_ 321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLKIV 371 (371)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCTTCCCC
T ss_pred CCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCHHHHCCEECC
T ss_conf 255569889999948998656799999189939999698684653587639
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=0 Score=27943.54 Aligned_cols=1 Identities=0% Similarity=-1.457 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 k~~~~~~p~~~~~~~~~v~~~l~~~~~~~G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~ 80 (371)
T d2fnua1 1 KEFAYSEPCLDKEDKKAVLEVLNSKQLTQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTP 80 (371)
T ss_dssp CCEESCCCCCCHHHHHHHHHHHTSSCCSSSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECS
T ss_pred CEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCC
T ss_conf 92067899899999999999981898668977999999999997829399982689999999999544579977052013
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~t~~a~~~ai~~~G~~pv~vDi~~~~~~~~~~~~~~~~~~t~avi~vh~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga 160 (371)
T d2fnua1 81 ISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGS 160 (371)
T ss_dssp SSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTC
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCCC
T ss_conf 44332200022058632123332223221012333046200001123445653334532121102220011314441586
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~G~~g~~~~~Sf~~~K~l~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~ 240 (371)
T d2fnua1 161 EYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLS 240 (371)
T ss_dssp EETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHH
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 01030478643222335566534320154578762122200000012101122322222311256510033145555544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 qL~~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~y~pl~~ 320 (371)
T d2fnua1 241 QLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQ 320 (371)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGG
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCC
T ss_conf 43211210334443310001212223333332233333333333322222221067999999999879984144765112
Q ss_pred --------------------------------------------------C
Q ss_conf --------------------------------------------------5
Q 000920 1082 --------------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~~ 371 (371)
T d2fnua1 321 YQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 371 (371)
T ss_dssp SHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHCCCCCCCHHHHHHHHCEEECCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 898884266689989999984959896888889999999999999999748
|
| >d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4, catalytic C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Peptidylarginine deiminase Pad4, catalytic C-terminal domain domain: Peptidylarginine deiminase Pad4, catalytic C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27871.18 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 APwimtpnt~~p~eV~v~~~~~n~~Fi~~v~~l~~~a~~~l~i~~~~~~~~DrW~QDe~E~GY~qaP~~~~pVvldspR~ 80 (370)
T d2dexx3 1 APWIMTPNTQPPQEVYACSIFENEDFLKSVTTLAMKAKCKLTICPEEENMDDQWMQDEMEIGYIQAPHKTLPVVFDSPRN 80 (370)
T ss_dssp CCCBCCCTTSCEEEEEECCCSSCHHHHHHHHHHHHHTTCEEEECCHHHHTTCCCTTTSEEEEEEEETTEEEEEEEECTTC
T ss_pred CCEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEECCCCCCEEEECCCCCCCEEEECCCC
T ss_conf 98574689998648999861268999999999999729956746524578980300021130342689974558607220
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~gl~~fp~~~llg~dfG~~tr~~~~~~v~~lDSfGNLEvsPPvt~~Gk~YPlGRIliG~s~~~~~~gr~m~~~v~dFL~A 160 (370)
T d2dexx3 81 RGLKEFPIKRVMGPDFGYVTRGPQTGGISGLDSFGNLEVSPPVTVRGKEYPLGRILFGDSCYPSNDSRQMHQALQDFLSA 160 (370)
T ss_dssp SGGGGHHHHTTSBTTBEEEECSCSSSCCCGGGSGGGEEECCCEEETTEEETTCCEEEEECSSCCTTCCCCCHHHHHHHHH
T ss_pred CCCHHCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 33011527774178753387348877642023567734479862588426777488547788876545330899999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 Q~VQ~Pv~L~sdWL~VGHVDEf~~FvPa~~~kgfrlLlAsP~a~~~Ll~~~q~~GhG~a~~f~g~~~~~~~tI~~iL~d~ 240 (370)
T d2dexx3 161 QQVQAPVKLYSDWLSVGHVDEFLSFVPAPDRKGFRLLLASPRSCYKLFQEQQNEGHGEALLFEGIKKKKQQKIKNILSNK 240 (370)
T ss_dssp SGGGCCEEEECTTBSSCCGGGTEEEEECSSGGGEEEEEEEHHHHHHHHHHHHHTTCTTCEETTTCTTSCCEEHHHHHHCH
T ss_pred HCCCCCCEECCCHHHCCCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHCCH
T ss_conf 64599802305201057401017876369998538996388999999999987578646504655444221199986387
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~l~~~N~~~q~~Id~nr~iLKrELGLte~DIIdiP~LF~~~~~~~A~a~fP~mVNmlVlg~~L~iPkPfGP~inG~c~le 320 (370)
T d2dexx3 241 TLREHNSFVERCIDWNRELLKRELGLAESDIIDIPQLFKLKEFSKAEAFFPNMVNMLVLGKHLGIPKPFGPVINGRCCLE 320 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCEEECGGGCEEESSCCTTSCEEETTEEEEECCCCCEETTEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEHHH
T ss_conf 78999999998631789999987099867731253440545878621237641666874033067899788488630799
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------5
Q 000920 1082 -------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------~ 1082 (1223)
.
T Consensus 321 e~v~~lleplGl~c~FiDD~~sYh~~~GeVHcgTNv~R~pf~~kWW~~~p 370 (370)
T d2dexx3 321 EKVCSLLEPLGLQCTFINDFFTYHIRHGEVHAGTNVRRKPFSFKWWNMVP 370 (370)
T ss_dssp HHHHHHHGGGTCEEEEECCTTTTGGGTCCTTTTEEEEECCCSSCGGGCCC
T ss_pred HHHHHHHCCCCCEEEEECCCHHHHHCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99999745478758995473788861772540464441788866702689
|
| >d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NIF3 (NGG1p interacting factor 3)-like superfamily: NIF3 (NGG1p interacting factor 3)-like family: NIF3 (NGG1p interacting factor 3)-like domain: Nif3-related protein BC4286 species: Bacillus cereus [TaxId: 1396]
Probab=100.00 E-value=0 Score=27865.92 Aligned_cols=1 Identities=0% Similarity=-2.055 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~p~~~eii~~le~~~P~~lAe~wDnvGL~vg~~~~~V~~I~valD~t~~vi~eAi~~~adlIItHHPl~f~~~k~l~~~~ 80 (370)
T d2gx8a1 1 IPNGHEIISLFESMYPKHLAMEGDKIGLQIGALNKPVRHVLIALDVTEEVVDEAIQLGANVIIAHHPLIFNPLKAIHTDK 80 (370)
T ss_dssp CCBHHHHHHHHHHHSCGGGSCTTCCCEEEESCSSSBCCEEEEESSCCHHHHHHHHHHTCCEEEESSCSCCSCCSCCCTTS
T ss_pred CCCHHHHHHHHHHHCCHHHCCCCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 99789999999986999671567987379689977649899997699999999997799999979987768964466788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~li~~~I~vys~HTnlD~~~~G~nd~La~~Lgl~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~agag~ 160 (370)
T d2gx8a1 81 AYGKIIEKCIKNDIAIYAAHTNVDVAKGGVNDLLAEALGLQNTEVLAPTYAEEMKKVVVFVPVTHAEEVRKALGDAGAGH 160 (370)
T ss_dssp HHHHHHHHHHHTTCEEEECCHHHHHSTTSHHHHHHHHTTCEEEEEEEEEEEEEEEEEEEEECHHHHHHHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHCCCEEEEECCCHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCHHCCCCC
T ss_conf 05699999997897699932402105775799999984897533335555555542389817256666653000037875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ig~y~~~~~~~~g~G~~~~~~~~~P~ig~~~~~~~~~e~~~e~~~~~~~~~~v~~al~~ahpy~~~~~~~~~~~~~~~~~ 240 (370)
T d2gx8a1 161 IGNYSHCTFSSEGTGTFVPQEGTNPYIGETGQLERVEEVRIETIIPASLQRKVIKAMVTAHPYEEVAYDVYPLDNKGETL 240 (370)
T ss_dssp BTTEEEEEEEEEEEEEEEEC-----------CCEEEEEEEEEEEEEGGGHHHHHHHHHHHSSSSSCCEEEEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHEEEECHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCC
T ss_conf 45632131013676541477788875676785664131430220427778889998887288610133421234655555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 G~Grig~l~~p~~l~~~~~~vk~~l~~~~vr~~g~~~~~I~~VAvc~GSG~s~i~~a~~~gaDv~ITGe~k~h~~~dA~~ 320 (370)
T d2gx8a1 241 GLGKIGYLQEEMTLGQFAEHVKQSLDVKGARVVGKLDDKVRKVAVLGGDGNKYINQAKFKGADVYVTGDMYYHVAHDAMM 320 (370)
T ss_dssp EEEEEEEEEEEEEHHHHHHHHHHHTTCSCCEEESCTTSEEEEEEEEEEECGGGHHHHHHTTCSEEEEECCCHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
T ss_conf 76459993786039999999998719982899588887423799973662789999987799899982886799999997
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------5
Q 000920 1082 -------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~gi~lId~GH~sE~~~~~~l~~~L~~~~~~~~~~i~v~~S~~~~dP~~~i 370 (370)
T d2gx8a1 321 LGLNIVDPGHNVEKVMKQGVQKQLQEKVDAKKLNVHIHASQLHTDPFIFV 370 (370)
T ss_dssp HTCEEEECCGGGGGHHHHHHHHHHHHHHHHTTCCCEEEECCCCCCCCCCC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEC
T ss_conf 69979978832628999999999999750048856999954778976449
|
| >d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione synthetase ATP-binding domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATP-grasp superfamily: Glutathione synthetase ATP-binding domain-like family: Eukaryotic glutathione synthetase ATP-binding domain domain: Eukaryotic glutathione synthetase ATP-binding domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27864.86 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~l~d~~~~~~l~~~a~dwa~~hGl~m~~~~~~~~~~~~~~aP~tL~Pspfpr~~F~~a~~vq~~~neL~~~vS~D 80 (370)
T d2hgsa4 1 TNWGSLLQDKQQLEELARQAVDRALAEGVLLRTSQEPTSSEVVSYAPFTLFPSLVPSALLEQAYAVQMDFNLLVDAVSQN 80 (370)
T ss_dssp CCSGGGGSCHHHHHHHHHHHHHHHHHTTCEEECSSCTTCCSSEEECCEESSCCEECHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99876588889999999999999997483654688888878345578685577687899999999999999999999737
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~fL~~~l~~~~~~D~Ft~~L~~i~~~v~~~g~~q~l~Lgl~RSDYMl~~~~~~~~~~KQVE~NTIS~sfggls~~v~~l 160 (370)
T d2hgsa4 81 AAFLEQTLSSTIKQDDFTARLFDIHKQVLKEGIAQTVFLGLNRSDYMFQRSADGSPALKQIEINTISASFGGLASRTPAV 160 (370)
T ss_dssp HHHHHHHHHTHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECSSSCEEEEEEEEECSSCCCHHHHHHSHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHCCCCCCCCCCEEEEEECEEEEECCHHHHHHHHH
T ss_conf 99999999877414799999999999999617866259988200654167777665424786112330002176648999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 Hr~l~~~~~~~~~~~~~p~n~~~~~la~gla~a~~~y~~~KKvQQ~La~pgvLe~Fl~~~~~~~~~lr~tFa~ly~LD~~ 240 (370)
T d2hgsa4 161 HRHVLSVLSKTKEAGKILSNNPSKGLALGIAKAWELYGSTKKVQQELSRPGMLEMLLPGQPEAVARLRATFAGLYSLDVG 240 (370)
T ss_dssp HHHHHHHTTCHHHHTTSCCCCHHHHHHHHHHHHHHHHCCSHHHHHHTTSTTHHHHHSTTCHHHHHHHHHTCCCEEECSSS
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999862555421348899717999999999999974466778987498779987089889999999962314506887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~g~~a~~~a~~~p~~~VLKPQrEGGGnniyg~dI~~~L~~l~~~~e~~ayILMerI~P~~~~~~~vr~g~~~~~~~~iS 320 (370)
T d2hgsa4 241 EEGDQAIAEALAAPSRFVLKPQREGGGNNLYGEEMVQALKQLKDSEERASYILMEKIEPEPFENCLLRPGSPARVVQCIS 320 (370)
T ss_dssp HHHHHHHHHHHHSGGGEEEEESCCSSSCCBCHHHHHHHHHHHTTSGGGGGEEEEECCCCCCEEEEEECTTSCCEEEEEEE
T ss_pred CCCHHHHHHHHHCCHHEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCEEECCCCC
T ss_conf 45269999767390227755632477651015488999997688676667899974378776865898896022056132
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------5
Q 000920 1082 -------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ElGifG~~l~~~~~~~~N~~~G~LlRTK~~~~~EGGVaaG~g~lDSpylv 370 (370)
T d2hgsa4 321 ELGIFGVYVRQEKTLVMNKHVGHLLRTKAIEHADGGVAAGVAVLDNPYPV 370 (370)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEEETTCSSCCTTTTSCEEECCEEC
T ss_pred CCCCCEEEEECCCEEEEECCCEEEEECCCCCCCCCCEECCEECCCCCCCC
T ss_conf 22243799957987997165107886278988887810254206686649
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=100.00 E-value=0 Score=27862.70 Aligned_cols=1 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~g~~ 80 (370)
T d2iida1 1 RNPLAECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWY 80 (370)
T ss_dssp CCTTGGGGCCTTHHHHHHHHHHCSCCCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEE
T ss_pred CCCHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCE
T ss_conf 98557615881489999987647999999996999898889999999998789988999589988770678764877702
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~d~G~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (370)
T d2iida1 81 ANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGK 160 (370)
T ss_dssp EESSCCCEETTCHHHHHHHHHTTCCEEEECSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHH
T ss_pred ECCCCEEECCCCHHHHHHHHHHCCCCCEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 32575563276489999999838763101025786279618852220233322455433320355543467777887877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (370)
T d2iida1 161 VVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKL 240 (370)
T ss_dssp HHHHHHHSCHHHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCGGGTTSBHHHHHHHHHHHTTCCCEEEETTCTTHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 88988742125666530100179999873255577887752100121001467776421001212566655404569999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~ 320 (370)
T d2iida1 241 PTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPY 320 (370)
T ss_dssp HHHHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTT
T ss_pred HHHHHHHCCCCCCCCCEEEEEEEECCEEEEEEEECCCCEEEEEEEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 99999864876336864789888099189999964898179990078853898999607048999899999998337863
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------5
Q 000920 1082 -------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~~~~~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i~~a~~~ 370 (370)
T d2iida1 321 QFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASEN 370 (370)
T ss_dssp HHHHHHHHHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 10234504306668779963201378851099999999999999864249
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=100.00 E-value=0 Score=27862.18 Aligned_cols=1 Identities=0% Similarity=-1.058 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (370)
T d3coxa1 1 TLADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFG 80 (370)
T ss_dssp CCCTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBS
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98888899799978478999999999878793999967899887654533221113455443334544445544543456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~~~~~~~~~~~~y~~~e~~lgv~~~~~~~ 160 (370)
T d3coxa1 81 INKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAW 160 (370)
T ss_dssp CCCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 67656535664445578862156420356555015865524897885223556873788999999999750876444776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~a~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~s~~~~~L~~a~~~g~~~i 240 (370)
T d3coxa1 161 FESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTI 240 (370)
T ss_dssp HHHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSTTTTCSTTCCSSSBCCGGGTHHHHHHHTTCEEE
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 66788860889999999974986334664345565655444345531224522364443436837877899985898489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~t~~~V~~I~~~~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp~LLL~S~~~~~l~~~s~~vG~~~g~~~~~ 320 (370)
T d3coxa1 241 TTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMKAQGHLPNLSSQVGEGWGVLLNK 320 (370)
T ss_dssp ECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHHHHHHTTSSTTSCTTTTCCBSSCTTT
T ss_pred EECCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEECCEEEEEECHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCC
T ss_conf 73673899998499718999999588662322899989999995078885999996789897998877667885664575
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------5
Q 000920 1082 -------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~g~~~~~~~~~~~d~~~~pg~~~~np~~t~~a~a~~~~~~~~~~~~ 370 (370)
T d3coxa1 321 ATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIISSDI 370 (370)
T ss_dssp TSCTTSBCTTSTTEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 55666544687774576334366766768205379998878998875029
|
| >d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Pepsin(ogen) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=0 Score=27862.08 Aligned_cols=1 Identities=0% Similarity=-1.590 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~v~ipl~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs 80 (370)
T d3psga_ 1 LVKVPLVRKKSLRQNLIKDGKLKDFLKTHKHNPASKYFPEAAALIGDEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSS 80 (370)
T ss_dssp CEEEEEEECCCHHHHHHHTTCHHHHHHHCCCCGGGGTCTTSCCSSCCCTTGGGTTCCEEEEEEETTTTEEEEEEEETTCC
T ss_pred CEEEECCCCCCHHHHHHHCCCHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCC
T ss_conf 98981510735889988728289998761146455305555576464033134687799999986898389999967989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~~~~~~~~Yg~Gs~~G~~~~d~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 160 (370)
T d3psga_ 81 NLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAP 160 (370)
T ss_dssp CEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCS
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEECEEEEEEEEEEEEECCCCEECCCC
T ss_conf 82897865787332566621787564423679718999578359999999778650101211389999603674021456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~~~~w~v~~~~ 240 (370)
T d3psga_ 161 FDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDS 240 (370)
T ss_dssp CSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEETTEEEEECE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCEEECCCCCCHHCCCCEEEEEECCCCEEEEEEEE
T ss_conf 66644545674345688763453554054442226888605888771386378583330341158864135537998724
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 i~v~g~~~~~~~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~~~~~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~yi~ 320 (370)
T d3psga_ 241 ITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPSAYIL 320 (370)
T ss_dssp EESSSSEEECTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTCCEECCGGGGGGCCCEEEEETTEEEEECHHHHEE
T ss_pred EEECCEEEECCCCCCEEEECCCCEEECCHHHHHHHHHHHCCEEECCCCEEEECCCCCCCCEEEEEECCEEEEECHHHEEE
T ss_conf 87299677048970179845886275789999999998587260389677744226778619999899999988599399
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------5
Q 000920 1082 -------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~a 370 (370)
T d3psga_ 321 QDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp ECSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ECCCEEEEEEEECCCCCCCCCCEEECHHHHCCEEEEEECCCCEEEEEECC
T ss_conf 82992899999744589889719998896667999998999999899649
|
| >d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Arginyl-tRNA synthetase (ArgRS) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=27861.62 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
+
T Consensus 1 p~p~~~~~i~vEf~SpN~~kplHvGHlRs~iiGd~laril~~~G~~V~r~nyigD~G~Qi~~l~~~~~~~~~~~~~~~~~ 80 (370)
T d1iq0a2 1 PFPRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKY 80 (370)
T ss_dssp CCCCEEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCH
T ss_pred CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 99999986999863899998864311361799999999999769979899847976499999999999856153346544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~y~~~~~~~~~~~~~~~~~e~~~~le~~~~~~~~~~~l~~~~~~l~~l~v~fD~~~~Es~l~~~~~~~~~i~~l 160 (370)
T d1iq0a2 81 DHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALL 160 (370)
T ss_dssp HHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECEEEEECCCCCCCCHHHHHHHH
T ss_conf 56644324666542788888899999999987666999999999888865411331101012202322364146667666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~ga~~~d~~~~~~~~~~~~~vl~ksDG~~tY~t~DiAy~~~K~~~~~~~~~~~~~~~~~~~i~i~~ 240 (370)
T d1iq0a2 161 EQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSA 240 (370)
T ss_dssp TTSTTEECCSSSTTTTCEEEECTTTSCSCSCCEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEE
T ss_pred HHCCCEEECCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCEEECCHHHHHHHHCCCCCCCCEECCCCCCCCEEEEEC
T ss_conf 52361441246665447983374355566674003685267725862079987601033222110024467663267632
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~d~~~~~~~~d~~iyVvd~~Q~~h~~~v~~~~~~~g~~~~~~~~~hv~~g~v~~~g~kMStR~G~~v~l~dll~ea~~~a 320 (370)
T d1iq0a2 241 PEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRA 320 (370)
T ss_dssp EEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCEEEEEEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHH
T ss_conf 43443202356788887124047999999999981998034111257899983378534356887458999999999999
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------5
Q 000920 1082 -------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~r~~~~~~~~~~a~~vgi~avky~~L~~~~~~~~~Fd~d~~lsfe 370 (370)
T d1iq0a2 321 RAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFE 370 (370)
T ss_dssp HHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSS
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHEEHHHHHCCCCCCCEECHHHHCCCC
T ss_conf 99998508982008999987616632225864589998568789921479
|
| >d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Lipopolysaccharide core biosynthesis protein RfaG species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27861.12 Aligned_cols=1 Identities=0% Similarity=-1.855 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~i~f~~~~y~p~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (370)
T d2iw1a1 1 IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPA 80 (370)
T ss_dssp CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCCCTTCEEEECCCCCSSHHHHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 98999148899998999999999999977997999956787788886389986765544301158899999999986165
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (370)
T d2iw1a1 81 DRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPER 160 (370)
T ss_dssp SEEEESSCCTTCSEEECCSCCHHHHHHHHCCHHHHTSHHHHHHHHHHHHHHSTTCCCEEEESCHHHHHHHHHHHCCCGGG
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCCE
T ss_conf 52531036723789987622441046630474200040000067889999742157469982479999999860999642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 i~vi~~gv~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~gr~~~~Kg~~~li~a~~~l~~~~~~~~~~ii~g~~~~~~ 240 (370)
T d2iw1a1 161 FQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRK 240 (370)
T ss_dssp EEECCCCCCGGGSGGGSCTTHHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCCHH
T ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 89997402222112467656666654304888663699998514554203332011123323322100000112222223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PvI~s~~~g~~e~i~~~~~G~l~~~~ 320 (370)
T d2iw1a1 241 FEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEP 320 (370)
T ss_dssp HHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHCCCCCEEEECCC
T ss_conf 22222222222222223323344422233334443222234331133214577039993899718885279836998699
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------5
Q 000920 1082 -------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~d~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~~~~~~~~~~~~~ii~g~ 370 (370)
T d2iw1a1 321 FSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGG 370 (370)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
T ss_conf 99999999999997699999999999999999828547999999998485
|
| >d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=0 Score=27860.46 Aligned_cols=1 Identities=0% Similarity=0.172 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~v~~~g~~f~~nG~~~~~~G~N~~~~~~~~~~~~~~~~~~~~l~~~k~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~ 80 (370)
T d1rh9a1 1 NNFVYTDGTHFALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAFSHGGSRPLQSAPGVYNEQM 80 (370)
T ss_dssp CCCCEEETTEEEETTEEECEEEEECTTHHHHHHSTTTTHHHHHHHHHHHHTTCCEEEEESSCSSSSSCSEEETTEECHHH
T ss_pred CCCEEEECCEEEECCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf 99679989999999999999999526675011588999999999999998799199979856766765678887546788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 l~~ld~~l~~a~~~Gi~vi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~ 160 (370)
T d1rh9a1 81 FQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQYVEWAVQRGQKLTSDDDFFTNPMVKGFYKNNVKVVLTRVNTITKVA 160 (370)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCBSSSSSSBHHHHHHHHHHTTCCCCCGGGGGTCHHHHHHHHHHHHHHHHCBCTTTCSB
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999986999999624443212687555410025777677521124899999999999999998641666765
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~v~~~~l~NEp~~~~~~~~~~~~~~~~~~~~~ir~~dp~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (370)
T d1rh9a1 161 YKDDPTILSWELINEPRCPSDLSGKTFQNWVLEMAGYLKSIDSNHLLEIGLEGFYGNDMRQYNPNSYIFGTNFISNNQVQ 240 (370)
T ss_dssp GGGCTTEEEEESCBSCCCTTCTTSHHHHHHHHHHHHHHHHHCCSSEEECCCCCCCCGGGGGGSGGGCCCSCCHHHHHTST
T ss_pred HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 16870365300036666677543688999999999999965899749984221456544656777444565110235688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~D~~~~h~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPv~i~EfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (370)
T d1rh9a1 241 GIDFTTIHMYPNQWLPGLTQEAQDKWASQWIQVHIDDSKMLKKPLLIAEFGKSTKTPGYTVAKRDNYFEKIYGTIFNCAK 320 (370)
T ss_dssp TCCCEEEECCHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHTSCEEEEECCCCTTSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 66088753246765567760245667788999999999757975998453676789988889999999999999999998
Q ss_pred -------------------------------------------------C
Q ss_conf -------------------------------------------------5
Q 000920 1082 -------------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~G~~~W~~~~~~~~~~~dg~g~~~~d~~~t~~~~~~~~~~~~~~~ 370 (370)
T d1rh9a1 321 SGGPCGGGLFWQVLGQGMSSFDDGYQVVLQESPSTSRVILLQSLRLSKLS 370 (370)
T ss_dssp TTCSEEEEEESCBCCTTCGGGCCSCCBCGGGCHHHHHHHHHHHHHHTTCC
T ss_pred HCCCEEEEEEEEECCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 58980899982154788767799845866897228999999999986249
|
| >d1itua_ c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Renal dipeptidase domain: Renal dipeptidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27791.14 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~e~A~~lh~~~pViD~H~D~~~~l~~~~~~~~~~~~~~~~~~~~ghvDlprlr~Ggv~~q~faifv~~~~~~~~~~~ 80 (369)
T d1itua_ 1 DFFRDEAERIMRDSPVIDGHNDLPWQLLDMFNNRLQDERANLTTLAGTHTNIPKLRAGFVGGQFWSVYTPCDTQNKDAVR 80 (369)
T ss_dssp CHHHHHHHHHHTTSCEEEEEECHHHHHHHHHTTCTTSGGGCTTTCCSSSCCHHHHHHTTEEEEEEEECCCGGGTTTTHHH
T ss_pred CHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCHHHHH
T ss_conf 94789999996489989834328999998733333444344355888865799999669987999998078777759999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~al~~id~~~~~~~~~~d~~~~~~s~~di~~a~~~gkiavil~iEg~~~l~~dl~~L~~~y~lGvR~i~Lt~n~~N~~a~ 160 (369)
T d1itua_ 81 RTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGGHSIDSSLGVLRALYQLGMRYLTLTHSCNTPWAD 160 (369)
T ss_dssp HHHHHHHHHHHHHHHCTTTEEECCSHHHHHHHHHHTCEEEEEEEECGGGGTTCHHHHHHHHHTTEEEEESCSSSCCSSBC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 99999999999999688768973157899998743672788414345311256799999986495598722687887777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~g~~~~~~~GLt~~G~~~V~emn~lGmiiDlSH~s~~~~~dv~~~s~~PviaSHsn~ral~~h~RNl~De~l~aI 240 (369)
T d1itua_ 161 NWLVDTGDSEPQSQGLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVPDDVLRLV 240 (369)
T ss_dssp BGGGGGTSSCCSSSSBCHHHHHHHHHHHHHTCEEECTTBCHHHHHHHHHHCSSCCEESSCCBTTTSCCTTSBCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHCCCCHHHHHHH
T ss_conf 75433577876678867678999998641481666487868899988612577456424026654033338998999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 a~~GGviGi~~~~~fl~~~~~~~~~~~~~hi~~~~~l~G~dhVgiGsDfdg~~~~p~gl~~~~~~p~l~~~L~~rG~se~ 320 (369)
T d1itua_ 241 KQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEA 320 (369)
T ss_dssp HHHTCEEEECCCHHHHTSSSCCBHHHHHHHHHHHHHHHCGGGEEECCCTTSCSCCCBTCSSTTCHHHHHHHHHHTTCCHH
T ss_pred HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 96597488850564212330236899999999999870952179865678999998777787788999999998699999
Q ss_pred ------------------------------------------------C
Q ss_conf ------------------------------------------------5
Q 000920 1082 ------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~i~ki~g~N~lRv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (369)
T d1itua_ 321 EVKGALADNLLRVFEAVEQASNLTQAPEEEPIPLDQLGGSCRTHYGYSS 369 (369)
T ss_dssp HHHHHHTHHHHHHHHHHHHHCCSSSCCCCCCCCGGGCCSSSCCCTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 9999998869999999999998613876789984572765441578899
|
| >d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: HD domain domain: Hypothetical protein aq 1910 species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=0 Score=27789.73 Aligned_cols=1 Identities=100% Similarity=-0.095 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~k~~~D~i~g~i~~~~~~~rii~s~~fqRL~~~~Ql~~~~~v~p~a~htR~~HSLgV~~lar~l~~~l~~~~~~~v~~A 80 (369)
T d2heka1 1 MIKEFSDPLYGFVRVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHITERICESLKVKEKELVKLA 80 (369)
T ss_dssp CEEEEEETTTEEEEEEHHHHHHHTSHHHHGGGGSBTTTTGGGTSTTCCCBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHH
T ss_pred CCEEEECCCCCCEECCHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 95377359988886488999982997670345773478552338999566211998999999999999743328899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~LlHDiGh~PFsH~gE~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~d~ 160 (369)
T d2heka1 81 GLLHDLGHPPFSHTTEVLLPRERSHEDFTERVIKETEIYEILKQDYSHEDIERLVRITLGKPEDEEEKLLSEIITGEFGS 160 (369)
T ss_dssp HHTTTTTCCSSSSCHHHHSTTSSSCCCHHHHHHHHSHHHHHHHTTSCHHHHHHHHHHHHTCCSSHHHHHHHHHHHSTTCH
T ss_pred HHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCHH
T ss_conf 99860265022204666620345520468998740179999998521236999999863246675204588775265101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 Drldyl~rd~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~~~~~~~e~~~~~R~~m~~~vy~h~~~~~~~~~l~~~~~~~ 240 (369)
T d2heka1 161 DRMDYLRRDAYFCGVSYGFFDYDRLISTLRVYENKVVVDESGLRALENFLISRYFMYVQVYFHKVVRILSIHLVEFLKKL 240 (369)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCCHHHHHTEEEETTEEEEEGGGHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 03433344465506767730199998877653400013563499999999999999899955478899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~d~~~~~~l~D~~i~~~L~~~~~~~~~~~~i~~R~l~K~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 320 (369)
T d2heka1 241 ISQEDFTDINNFLRLNDAFVISELFKRKAFREDFERIFQRKHFKTLLSTENYEKFSETKERLLEKFPQEKVRFDEVEKEV 320 (369)
T ss_dssp TSSCCCSSTHHHHTCCHHHHHHHHHHCSTTHHHHHHHHSSCCCEEEEEESCHHHHHHHHHHHHHHSCGGGEEEEEEEECS
T ss_pred HHCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 86589788999973369999999985802519999998340252020167788899999999987442144401343445
Q ss_pred ------------------------------------------------C
Q ss_conf ------------------------------------------------5
Q 000920 1082 ------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~i~i~~~~~l~~l~~~S~lv~~L~~~~~~riy~~~~v~e~~~~~~~ 369 (369)
T d2heka1 321 YGGNIYVLSSEGLKKAHELSPLIASLKPIKLYRIYVDRQLWEKARSELK 369 (369)
T ss_dssp CCSCCEEEETTEEEEHHHHCHHHHHCCCEEEEEEEECTTTHHHHHHTTC
T ss_pred CCCCEEEECCCCEEEHHHHCHHHHHHHHHHHEEEECCHHHHHHHHHHHC
T ss_conf 6777489639855583563699998688666378889999999998629
|
| >d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Porphyromonas-type peptidylarginine deiminase domain: Agmatine iminohydrolase species: Streptococcus mutans [TaxId: 1309]
Probab=100.00 E-value=0 Score=27789.46 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~tp~~~g~rmPaEwep~~~~~l~wP~~~~~w~~~~~~~~~~~~~i~~~ia~~e~V~~~v~~~~~~~a~~~~~~~ 80 (369)
T d2ewoa1 1 AKRIKNTTPKQDGFRMPGEFEKQKQIWMLWPWRNDNWRLGAKPAQKAFLEVAEAISEFEPVSLCVPPLQYENALARVSEL 80 (369)
T ss_dssp CCEECSSCHHHHTCCCCCTTSCEEEEEECCCCCTTTSSGGGHHHHHHHHHHHHHHHTTSCEEEEECGGGHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHC
T ss_conf 98567899301387878872416069998789986303578999999999999985898699998938999999998536
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~i~~~~~~~dD~W~RD~GP~~v~~~~g~~~~vdf~FN~wG~k~~~~~~~~~~d~~~~~~ia~~~~~~~~~~~~lvlE 160 (369)
T d2ewoa1 81 GSHNIRIIEMTNDDAWIRDCGPTFLVNDKGDLRAVDWEFNAWGGLVDGLYFPWDQDALVARKVCEIEGVDSYKTKDFVLE 160 (369)
T ss_dssp TCCSEEEEECCCSSCCTTTSSCEEEECSSSCEEEEEEECCTTTTTTTCSSSCCTTHHHHHHHHHHTTTCCEEEEEEEECC
T ss_pred CCCCEEEEEECCCCHHHHCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEC
T ss_conf 77777999924797566134645898588988998533367765445545522457799999998736543466354875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 GG~ie~dG~GtlltT~~cll~~nRNp~~s~~~ie~~L~~~LGv~~viwL~~g~~~DdTdGHID~~arFi~~~tvl~~~~~ 240 (369)
T d2ewoa1 161 GGSIHVDGEGTVLVTEMCLLHPSRNPHLTKEDIEDKLKDYLNCVKVLWVKDGIDPYETNGHIDDVACFIRPGEVACIYTD 240 (369)
T ss_dssp GGGEEEETTTEEEEEHHHHTSTTSCTTSCHHHHHHHHHHHHCCSEEEEECCCSCTTTTSSCSTTTEEEEETTEEEEBCCC
T ss_pred CCCEEECCCCCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEECC
T ss_conf 89789889985896445621667899989999999999985994799844766666667773206997289849997148
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 d~~~~~y~~~~~~~~~L~~~~d~~G~~~~i~~lp~p~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~VivP 320 (369)
T d2ewoa1 241 DKEHPFYQEAKAAYDFLSQQTDAKGRPLKVHKMCVTKEPCYLQEAATIDYVEGSIPREEGEMAIASYLNFLIVNGGIILP 320 (369)
T ss_dssp CTTSTTHHHHHHHHHHHHTCBCSSSCBCEECCBCBCSSCEECCCGGGSCCCCC-------CEECCBTTCCEEETTEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEE
T ss_conf 87786579999999999987875699753885368975443333455444467664568988654236789999999990
Q ss_pred ------------------------------------------------C
Q ss_conf ------------------------------------------------5
Q 000920 1082 ------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~yg~~~D~~Al~~l~~~fP~r~Vv~i~~~~l~~~gG~iHCiT~q~Pa~~ 369 (369)
T d2ewoa1 321 QYGDENDQLAKQQVQEMFPDRKVVGVRTEEIAYGGGNIHCITQQQPATL 369 (369)
T ss_dssp CCSCTTHHHHHHHHHHHSTTSEEEEECTHHHHTTSCCTTTTCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCEECCCCCCCCC
T ss_conf 1798678999999998888997999844698864975247164536899
|
| >d1rwha1 a.102.3.2 (A:4-372) Chondroitinase AC {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Chondroitinase AC species: Arthrobacter aurescens [TaxId: 43663]
Probab=100.00 E-value=0 Score=27789.39 Aligned_cols=1 Identities=0% Similarity=-0.128 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~d~~~lr~rw~~~l~g~~~~~~~d~~~~~~l~~l~~~a~~~~~~~~~~~~~~~lW~dl~~~~sa~~~~~~~rl~~mA 80 (369)
T d1rwha1 1 PGAAEFAALRNRWVDQITGRNVIQAGDPDFAKAITALNNKAADSLAKLDAAAGRTSVFTDLSLAKDAEMVTTYTRLSQLA 80 (369)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCCTTCHHHHHHHHHHHHHHHHHHHTBCCCTTCSCSBTTCCTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 96679999999999997488766657878999999999999999997335677666688887886278999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~Ay~~pgs~~y~d~~l~~~I~~al~~l~~~~~~~~~~~~gNWW~~eIg~P~~l~~~liLl~d~l~~~~~~~~~~~i~~f~ 160 (369)
T d1rwha1 81 TAWATPTAAVFGDAAVLAAIKAGLADANTLCYNDRKEEVGNWWSWEIGVPRALADAMVLLHAELSAAERTAYCAAIDHFV 160 (369)
T ss_dssp HHHTSTTSTTTTCHHHHHHHHHHHHHHHHHTSSTTCCCCSCHHHHHTHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 99819999542699999999999999997188789999999101532858999999998502179899999999999866
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 pdp~~~~~~~~~~~~~tGaNrvd~a~~~i~~glL~~d~~~v~~a~~~i~~v~~~vt~gdGf~~DgSf~qH~~~~Y~G~YG 240 (369)
T d1rwha1 161 PDPWLQFPPKRGKITSVGANRVDLCQGIIIRSLAGEDPTKLNHAVAGLSQVWQYVTSGDGIFRDGSFIQHSTTPYTGSYG 240 (369)
T ss_dssp SCTTEESCGGGCCEECCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHGGGGGSCBSSSSEEBTTSCEEETTTEECTTTHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCEECCCCCH
T ss_conf 78643346667752252009999999999999980899999999998641122245897423477636304442166425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~l~~~~~~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~i~~g~m~~~v~GR~ISR~~~~~~~~g~~~~~~~~~la~~~ 320 (369)
T d1rwha1 241 VVLLTGLSKLFSLLGGTAFEVSDPTRSIFFDAVEGSFAPVMINGAMADAVRGRSISREANTGYDLGASAIEAILLLARAM 320 (369)
T ss_dssp HHHHHHHHHHHHHHTTSTTCCCCGGGHHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999999999997799898887899999999995003462577116667887100788776168999999999998519
Q ss_pred ------------------------------------------------C
Q ss_conf ------------------------------------------------5
Q 000920 1082 ------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~~~~~~vk~~i~~d~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~ 369 (369)
T d1rwha1 321 DPATAARWRGLCAGWIARDTYRPILNSASVPRTALVKQLEATGVAPVAE 369 (369)
T ss_dssp CHHHHHHHHHHHHHHHHTCCSSCTTTTCCHHHHHHHHHHHHHTCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999999999998718765544676522689999986067783889
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=100.00 E-value=0 Score=27787.21 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~g~~P~~l~~~y~~~~~~tG~gvtVaIid~G~~~~~~~Dl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 80 (369)
T d1ga6a_ 1 AGTAKGHNPTEFPTIYDASSAPTAANTTVGIITIGGVSQTLQDLQQFTSANGLASVNTQTIQTGSSNGDYSDDQQGQGEW 80 (369)
T ss_dssp CCBCCCBCGGGHHHHTTCTTSCCEEEEEEEEEEESBCHHHHHHHHHHHHHTTCCCCCEEEEECSCTTSCCCBCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCEEE
T ss_conf 98887749899999739998889887489999617865678899999986599989977651799888888887721133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~ld~~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~~~~~~a~~~a~~~G 160 (369)
T d1ga6a_ 81 DLDSQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQG 160 (369)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 24500001015686499999957999865699999999999758986244244322457886168999999999999789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 i~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggg~s~~~ 240 (369)
T d1ga6a_ 161 QTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGAYSNETVWNEGLDSNGKLWATGGGYSVYE 240 (369)
T ss_dssp CEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEEECTTSCEEEEEECEEEECTTSCEEECCCEEEEEE
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 78998179876557678898766543434665688402333100135777765442021356787755335789866656
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~P~~~~~~~~~~~~r~~pdv~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~vAGvvALi~~a~~~~~G~~n~~ly~~~~~ 320 (369)
T d1ga6a_ 241 SKPSWQSVVSGTPGRRLLPDISFDAAQGTGALIYNYGQLQQIGGTSLASPIFVGLWARLQSANSNSLGFPAASFYSAISS 320 (369)
T ss_dssp ECCGGGGGSTTSCSEEEECSEEEECCGGGCEEEEETTEEEEECSHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEECCEECCCCCCCCEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 67543334422578852201102467875048726854666578753113899999999863567668768899998864
Q ss_pred ------------------------------------------------C
Q ss_conf ------------------------------------------------5
Q 000920 1082 ------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~di~~g~n~~~~~~~~a~~G~d~~tG~G~~d~~~l~~~~~s~~~ 369 (369)
T d1ga6a_ 321 TPSLVHDVKSGNNGYGGYGYNAGTGWDYPTGWGSLDIAKLSAYIRSNGF 369 (369)
T ss_dssp CGGGEECCCSCBSSSTTCSCBCCSSSBTTTBTCEECHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHCCC
T ss_conf 7665204445888888887678678988956724379999999986699
|
| >d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: D-maltodextrin-binding protein, MBP species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27784.08 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 k~~eg~ltvW~~~~~~~~~~~~~~~~fe~~~gv~V~v~~~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~g~l~~L~ 80 (369)
T d1laxa_ 1 KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTDPKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEIT 80 (369)
T ss_dssp CCCTTSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTTCSCSEEEEEGGGHHHHHHTTCBCCCC
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCC
T ss_conf 98630899996798316999999999865219879999688799999999866999869998908899999879967588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~dG~~ygiP~~~~~~~~~ynkd~~~~~p~Tw~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (369)
T d1laxa_ 81 PDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPL 160 (369)
T ss_dssp CCHHHHTTBCHHHHHHTEETTEECSEEEEEECCEEEEETTTCSSCCSBGGGHHHHHHHHHTTTCEEECCCCSSGGGTHHH
T ss_pred HHHHHHHHHHHHHHHHCEECCEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 44533455468898653489999897510220135775000112110057899876442037875632577764004899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~ 240 (369)
T d1laxa_ 161 IAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV 240 (369)
T ss_dssp HHHTTCEEEEECSSCEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTC
T ss_pred HHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEECCHHHHHHHHCCCC
T ss_conf 98717720002355544454455778999999999998752764444552677765515775687416577540011245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~p~~~~~~~~~~~~~~~~~i~~~s~~~~~A~~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (369)
T d1laxa_ 241 NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAAT 320 (369)
T ss_dssp CEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHHHHHHHHHHTTSSHHHHHHHHHHSCCCEESBHHHHHHHTTSHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHH
T ss_conf 61376314555677655556435664057855899999999864899999999973898865133200444439489999
Q ss_pred ------------------------------------------------C
Q ss_conf ------------------------------------------------5
Q 000920 1082 ------------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~s~~eal~~~~~~it 369 (369)
T d1laxa_ 321 MENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRIT 369 (369)
T ss_dssp HHHHHHSEECCCSTTHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf 9999608007888568999999999999998399999999999998519
|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=0 Score=27711.14 Aligned_cols=1 Identities=0% Similarity=-2.387 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gnIkV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~ 80 (368)
T d2ncda_ 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQS 80 (368)
T ss_dssp CCSSSGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCGGGTTSCBCEEEEETTTEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHCCCCCCEEEECCCCEEEECC
T ss_conf 91589999999999999999999999999999999874899756997999990789901027898579957998699706
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~Lf 160 (368)
T d2ncda_ 81 IDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLF 160 (368)
T ss_dssp SCHHHHTTTCCCEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETTEECHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHH
T ss_conf 88655677686466778587999986214999998898775036513773115787560671366644344667999876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~~~~~~~~d~~~~~~v~g~~~~~v~~~~~~~~~l~~g~~~r~~~ 240 (368)
T d2ncda_ 161 DSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATA 240 (368)
T ss_dssp HHHHHHHTTSCEEEEEEEEEEESSSCEEETTCSSCCCCCEEECTTCTTCEEETTCCCEEECSHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHCCCCCCCEEEEEEEEEECCEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 45443202455526899999886560201256421354311302666442334430220477788999999987511244
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~t~~n~~ssrSh~i~~i~v~~~~~~~~~~~~s~l~~VDLAGse~~~~~~~~~E~~~IN~SL~aL~~vi~aL~~~~~~iPy 320 (368)
T d2ncda_ 241 STAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPY 320 (368)
T ss_dssp SSSCTTTTTTCEEEEEEEEEEECTTSCCEEEEEEEEEECCCCCCC----------CTTHHHHHHHHHHHHHHTTCSCCCG
T ss_pred CCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 22146545554327899999976698856765444422010233102321024552026499999999998658998997
Q ss_pred -----------------------------------------------C
Q ss_conf -----------------------------------------------5
Q 000920 1082 -----------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------~ 1082 (1223)
-
T Consensus 321 R~SkLT~lL~dsLggns~t~mI~~isp~~~~~~eTl~TL~fa~rak~~ 368 (368)
T d2ncda_ 321 RNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSC 368 (368)
T ss_dssp GGSHHHHHHGGGSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 578889998985599870999999798735499999999999997569
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=27711.04 Aligned_cols=1 Identities=0% Similarity=-0.094 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~k~ltfdDVlLvP~~sti~srdVdls~~~~~~~~l~iPIiss~MDtV~~~~mA~~la~~Gglgvlhr~~~~ 80 (368)
T d2cu0a1 1 KFVEKLEKAIKGYTFDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMGI 80 (368)
T ss_dssp CHHHHHHTCCCCCCGGGEEECCCCCSSCSTTCBCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSCH
T ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCH
T ss_conf 96788998876288000898589776766563653796188314889895798776888999999978996575064898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 e~~~~~v~~v~~~e~~~~~~~d~~~~~~v~~~~~~~~~~r~~~l~~aGvd~ivID~A~Gh~~~~i~~lK~ir~~~~~~vI 160 (368)
T d2cu0a1 81 EEQVEQVKRVKRAEKYKNAVRDENGELLVAAAVSPFDIKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKVDADFI 160 (368)
T ss_dssp HHHHHHHHHHHTCCCCTTCCBCTTSCBCCEEEECTTCHHHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHHTCCSEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 99999887433444324101366763799932572778999999983998798437542012456666554121043132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 aGNVaT~e~~~~l~gaD~VkVGIG~Gs~CTTr~~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd 240 (368)
T d2cu0a1 161 VGNIANPKAVDDLTFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGAD 240 (368)
T ss_dssp EEEECCHHHHTTCTTSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCS
T ss_pred ECCCCCHHHHHHHHCCCCEEECCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHEEEEECCC
T ss_conf 21136799997652276214445675555332112423434789999999875249706845887867721135664132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~VMlG~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~l~~l~ 320 (368)
T d2cu0a1 241 AVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLV 320 (368)
T ss_dssp EEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------CCCCSCSSCCBCEEEEECCBCHHHHHHHHH
T ss_pred EEECCCHHCCCCCCCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 35305311142235773671599270135676642211357752223555333444378832885078888899999999
Q ss_pred -----------------------------------------------C
Q ss_conf -----------------------------------------------5
Q 000920 1082 -----------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------~ 1082 (1223)
-
T Consensus 321 gglrs~m~y~G~~~l~e~~~~~~f~~vt~a~~~E~~~h~~~~~~~~~~ 368 (368)
T d2cu0a1 321 GGLKAGMGYVGARNIRELKEKGEFVIITHAGIKESHPHDIIITNEAPN 368 (368)
T ss_dssp HHHHHHHHHTTCSBHHHHHHHCCEEECCHHHHHHHSCCSSCCSCCCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHCCEEEEECCCCCCCCCCCCEEEECCCCC
T ss_conf 999999876286509998509789999954142467877366356899
|
| >d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Glutamine synthetase/guanido kinase superfamily: Glutamine synthetase/guanido kinase family: Glutamate-cysteine ligase family 2 (GCS2) domain: Carboxylate-amine ligase YbdK species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27710.79 Aligned_cols=1 Identities=0% Similarity=-1.590 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~f~~~~~~tiGvE~E~~lvd~~~~~~~~~~~~ll~~~~~~~~~~~i~~El~~~qiEl~t~p~~~~~e~~~~l~~~~~~ 80 (368)
T d1r8ga_ 1 LPDFHVSEPFTLGIELEMQVVNPPGYDLSQDSSMLIDAVKNKITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKV 80 (368)
T ss_dssp CCCCCCCCTTCEEEEEEEEEEETTTTEECSCCHHHHTTTSSSCSSSEEEECSSSSEEEEECCSBSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999983489876543679987667757999997222246886310467766998077779999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~g~~P~~~~~~~~~~~~~ry~~~~~~~~~~~~~~~~~g~hv~~~~~d~~~~~~~~~~~~~~~p~l~ 160 (368)
T d1r8ga_ 81 VLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHVGCASGDDAIYLLHGLSRFVPHFI 160 (368)
T ss_dssp HHHHHHHTTCEEECCSBCSSCCC----------------CCGGGGCSCCBCEEEEEEECSSHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99987655875244575212672215577508999998742707888764256031168999999999999999868998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 aL~anSP~~~G~~tg~~s~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vRp~~~~~~iEiR~~D 240 (368)
T d1r8ga_ 161 ALSAASPYMQGTDTRFASSRPNIFSAFPDNGPMPWVSNWQQFEALFRCLSYTTMIDSIKDLHWDIRPSPHFGTVEVRVMD 240 (368)
T ss_dssp HHHCCBCEETTEECSCSBCGGGGGTTSTTCSSCCCCSSHHHHHHHHHHHTTSSSCSSGGGCCCSEEEETTTTEEEEEEEE
T ss_pred HHHCCCHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 88528663358677886775267750876565430001120799999998556445677056316876466742124789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~p~~~~~~~~aa~~~~l~~~l~~~~~~~~~~~~~~~~~~n~~~aar~Gl~~~l~~~~~~~~~~~~~~~~~Ll~~~~~~l 320 (368)
T d1r8ga_ 241 TPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKDYLLYKFNRFQACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSA 320 (368)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHCCCCCCGGGGTTHHHHHHHHHHHGGGSEEECTTTCCEEEHHHHHHHHHHHSHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf 99988999997568887888998617877640448999999998876144411000689967689999999999999999
Q ss_pred -----------------------------------------------C
Q ss_conf -----------------------------------------------5
Q 000920 1082 -----------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~lg~~~~l~~l~~~v~~g~t~A~~lr~~~~~~gsl~~~v~~~~e~~~ 368 (368)
T d1r8ga_ 321 HKIGASSAIEALHRQVVSGLNEAQLMRDFVADGGSLIGLVKKHCEIWA 368 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHTTCCHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 978898999999999982999999999999818999999999998739
|
| >d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Glutamine synthetase/guanido kinase superfamily: Glutamine synthetase/guanido kinase family: Glutamine synthetase catalytic domain domain: Glutamine synthetase, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=27710.19 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (368)
T d1f52a2 1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF 80 (368)
T ss_dssp TTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCSS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 98879999999999997699870378854288999421035576777565577322456887666887787655577615
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~~~E~~~~gq~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~Gl~atFmpKP~ 160 (368)
T d1f52a2 81 PVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPM 160 (368)
T ss_dssp BCTTSSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSCSS
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf 53001107889999999888622570564223456784322078786577889999999999999997436334741568
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~GsG~HiH~Sl~~~~~n~~~~~~~~~lS~~~~~fiaGll~~~~~~~al~~PtvNSYkRl~~~~~aP~~~~Wg~~NR~ 240 (368)
T d1f52a2 161 FGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRS 240 (368)
T ss_dssp TTSCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHHHHTHHHHHHHHSCSGGGGGTSSSCSSCCCEEEEESSCTT
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEECCCCCC
T ss_conf 89877532589874159985656555556489999999999986699899977996077652477768743452367655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 a~iRi~~~~~~~~~riE~R~~da~aNPYL~lAa~laagl~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~lP~sl~eAl~a 320 (368)
T d1f52a2 241 ASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLPPEEAKEIPQVAGSLEEALNA 320 (368)
T ss_dssp EEEECCCCSCGGGCCEEECCCCTTSCHHHHHHHHHHHHHHHHHTTCCCCSCCCSCCSSSCCSSTTCCCBCCSSHHHHHHH
T ss_pred CCEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHCHHCCCCCHHHHHHH
T ss_conf 31464025788662478447880177789999999976542421589999777872448976762320151379999999
Q ss_pred -----------------------------------------------C
Q ss_conf -----------------------------------------------5
Q 000920 1082 -----------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------~ 1082 (1223)
.
T Consensus 321 l~~d~~~~~a~~~lGe~~v~~y~~~K~~E~~~~~~~vt~wE~~~Yl~~ 368 (368)
T d1f52a2 321 LDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV 368 (368)
T ss_dssp HHHTCHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHTTC
T ss_pred HHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 964978788765156999999999999999999679999999741689
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=0 Score=27709.34 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~g~a~~~~a~~~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~ 80 (368)
T d1mdah_ 1 EKSKVAGSAAAASAAAASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFA 80 (368)
T ss_dssp CCCCCCSHHHHHHHTTCCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEE
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCCCCEECCCCCEEE
T ss_conf 94121200000123445679866645589876126972045788621799708998377888578777513989998899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~ 160 (368)
T d1mdah_ 81 LASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ 160 (368)
T ss_dssp EEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEE
T ss_pred EECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEE
T ss_conf 97556764010356786999989999383064378542102468864058878998999996899859999899893867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~ 240 (368)
T d1mdah_ 161 LTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPA 240 (368)
T ss_dssp EEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCS
T ss_pred EEECCCCCEECCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCEEEEEECC
T ss_conf 86046752374699823999948998899982689626665303111356664660101558689993489779996069
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a 320 (368)
T d1mdah_ 241 AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAII 320 (368)
T ss_dssp SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEE
T ss_pred CCEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECCCCCEEEEE
T ss_conf 93699760246543045540127883568871799879998358973340588649999899994868955899651799
Q ss_pred -----------------------------------------------C
Q ss_conf -----------------------------------------------5
Q 000920 1082 -----------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~~~~a 368 (368)
T d1mdah_ 321 AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQNEA 368 (368)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCCCC
T ss_pred ECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEECCC
T ss_conf 998999899999489996999989999799998799998789973489
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=27708.67 Aligned_cols=1 Identities=0% Similarity=-1.723 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~la~~~~~I~ls~g~p~~~~p~~i~~al~~~l~~~~~Y~~~~G~~elr~aiA~~~~~~~~~ 80 (368)
T d1v2da_ 1 MRLHPRTEAAKESIFPRMSGLAQRLGAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPES 80 (368)
T ss_dssp CCCCGGGGGC---CHHHHHHHHHHHTCEECCCCSCSSCCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHHHTSCGGG
T ss_pred CCCCHHHHHCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 97782345467879999999864399889459889998899999999998602568899867899999997525557741
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~ 160 (368)
T d1v2da_ 81 VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNT 160 (368)
T ss_dssp EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEES
T ss_pred EEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHCCCCEEEEECC
T ss_conf 26515307888777650444456532358850134567875177320001354345444788999975335765999769
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~ 240 (368)
T d1v2da_ 161 PMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEF 240 (368)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98866666999999999999998498265223333220333333222223344503641455323454322211144223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~~~~~~ 320 (368)
T d1v2da_ 241 MPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWDAF 320 (368)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTTCCHH
T ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCHHH
T ss_conf 32002221012332233333222222333221025788999999865322456876694786688306999968950899
Q ss_pred -----------------------------------------------C
Q ss_conf -----------------------------------------------5
Q 000920 1082 -----------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 321 RLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV 368 (368)
T ss_dssp HHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCEEEEECHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 999969999996233078999899899996499999999999999869
|
| >d1pyya4 e.3.1.1 (A:264-631) Penicillin-binding protein 2x (pbp-2x), transpeptidase domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: Penicillin-binding protein 2x (pbp-2x), transpeptidase domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=0 Score=27706.92 Aligned_cols=1 Identities=0% Similarity=-0.327 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 Tid~~lQ~~~e~~l~~~~~~~~~~~~~~vv~d~~TG~IlAmas~P~~dpn~~~~~~~~~~~~n~a~~~~~~PGStfKp~~ 80 (368)
T d1pyya4 1 TISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSAFKVMM 80 (368)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESCCCTTTCTTCCTTCCCCCHHHHCCBCCGGGGHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 93979999999999999997089569999999999939999967988854236766103443265517668863054699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~aaaLe~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vtl~~al~~S~N~~~~~l~~~lg~~~~~~~~~~~G~~~ 160 (368)
T d1pyya4 81 LAAAIDNNTFPGGEVFNSSELKIADATIRDWDVNEGLTGGRMMTFSQGFAHSSNVGMTLLEQKMGDATWLDYLNRFKFGV 160 (368)
T ss_dssp HHHHHHTTCCCTTCEEECCCEEETTEEECCEETTTEECCSCEEEHHHHHHTTCHHHHHHHHHHHCHHHHHHHHHHTTTTS
T ss_pred HHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 99864023332222222101102444432345544334880456999997532454143210358244789998753487
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~e~~g~~p~~~~~~~~~~~~G~~~~~tplq~a~aya~iANgG~~~~P~~i~~i~d~~g~~~~~~~~~~~~~~i 240 (368)
T d1pyya4 161 PTRFGLTDEYAGQLPADNIVNIAQSSFGQGISVTQTQMIRAFTAIANDGVMLEPKFISAIYDPNDQTARKSQKEIVGNPV 240 (368)
T ss_dssp CCCCSCSSCCCCBCCCSSHHHHHHGGGTCSCBBCHHHHHHHHHHHHTTTCEECCBCEEEEEEGGGTEEEECCCCEEECCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEECCCCCCCCCCCC
T ss_conf 42245433233467643320000222346655107888867789854876205579888866876410134432344443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~m~~~v~~~~~~~~~~~gtg~~~~~~~g~~vaGKTGTaq~~~~~~~~~~~~~~~~~~~fvg~~P~~~P~~ 320 (368)
T d1pyya4 241 SKDAASLTRTNMVLVGTDPVYGTMYNHSTGKPTVTVPGQNVALKSGTAQIADEKNGGYLVGLTDYIFSAVSMSPAENPDF 320 (368)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCTTEETTTTEESSCCTTSCCEEEEEEEECBCSSSSSBCCSTTCEEEEEEEEESSSSCSE
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCE
T ss_conf 27899999999987531145542676046531213799506678822201477788501366565699999957589959
Q ss_pred -----------------------------------------------C
Q ss_conf -----------------------------------------------5
Q 000920 1082 -----------------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------------~ 1082 (1223)
.
T Consensus 321 ai~V~v~~p~~~~g~~gg~vAapi~~~i~~~~~~l~~~~~~~~~~~~~ 368 (368)
T d1pyya4 321 ILYVTVQQPEHYSGIQLGEFANPILERASAMKDSLNLQTTAKALEQVS 368 (368)
T ss_dssp EEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTGGGCTTSCCSTTTTCC
T ss_pred EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999778867887306899999999999997743589999724489
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27637.58 Aligned_cols=1 Identities=0% Similarity=-0.261 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~e~ah~~~~~~~~~~~~~~~~~~~~~~L~v~~~Gl~~~nPi~lAsG~~~~~~~i~~~~ 80 (367)
T d1d3ga_ 1 MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLGLLPRARFQDSDMLEVRVLGHKFRNPVGIAAGFDKHGEAVDGLY 80 (367)
T ss_dssp CCSCCHHHHHHTHHHHHHHHSCHHHHHHHHHHHHHTTCCC---CCCCGGGCEEETTEEESSSEEECTTSSTTSSSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCEECCCCCEECCCCCCCHHHHHHHH
T ss_conf 97770899999999999865898999999999998337553236898777568899866998676848787899999986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~G~G~vv~kTit~~~~~gn~~pr~~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~pv~vsi~~~~~~~ 160 (367)
T d1d3ga_ 81 KMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSV 160 (367)
T ss_dssp HHTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCS
T ss_pred HCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCH
T ss_conf 35874786134246632457760322102111211224767754699998888875411343436863899834654507
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~ad~lelNiScPn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~vKlsP~~~~~~i~~~a 240 (367)
T d1d3ga_ 161 DAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIA 240 (367)
T ss_dssp CHHHHHHHHHHHHGGGCSEEEEESCCTTSTTC----CHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 88888877777765314400245000321122210111101257888887653202245776301247641000134467
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~~ipIig~GGI~s~~Da~e~i~aG 320 (367)
T d1d3ga_ 241 SVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAG 320 (367)
T ss_dssp HHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHT
T ss_pred HHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 88876543102113332234454344211244321121110230889999999738995199988979999999999839
Q ss_pred ----------------------------------------------C
Q ss_conf ----------------------------------------------5
Q 000920 1082 ----------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------~ 1082 (1223)
+
T Consensus 321 As~VQi~Ta~~~~Gp~ii~~I~~~L~~~l~~~G~~si~dl~G~a~~~ 367 (367)
T d1d3ga_ 321 ASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHRR 367 (367)
T ss_dssp CSEEEESHHHHHHCTHHHHHHHHHHHHHHHHTTCSSHHHHTTGGGGC
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCHHCCC
T ss_conf 97887417788239079999999999999984999899962802269
|
| >d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Citrate synthase superfamily: Citrate synthase family: Citrate synthase domain: Citrate synthase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=27637.07 Aligned_cols=1 Identities=0% Similarity=-0.593 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~GL~gv~~~eT~IS~id~~~G~L~YRG~~i~dLa~~~sFEEva~LL~~G~LPt~~el~~f~~~L~~~~~lp~~v~~~ 80 (367)
T d1o7xa_ 1 VVSKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYGSYEETIYLMLYGKLPTKKELNDLKAKLNEEYEVPQEVLDT 80 (367)
T ss_dssp CBCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 97977799837588680386898879998874999861599999999997798969999999999999863581999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 i~~~p~~~hpm~~l~~~vsal~~~d~~~~~~~~~~~~a~~l~A~~p~i~a~~~r~~~g~~~~~p~~~~s~~~~~~~~~~~ 160 (367)
T d1o7xa_ 81 IYLMPKEADAIGLLEVGTAALASIDKNFKWKENDKEKAISIIAKMATLVANVYRRKEGNKPRIPEPSDSFAKSFLLASFA 160 (367)
T ss_dssp HHHSCTTSCHHHHHHHHHHHHHHHCCCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCSCHHHHHHHHHHS
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 98601230146788888998765300234321110167789989999999999876489877885034468887654048
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~l~~~lvl~adHg~n~Stfa~r~~aSt~~d~~~~~~aa~~~l~Gplhgga~~~~~~~l~~~~~~~~~~~~~ 240 (367)
T d1o7xa_ 161 REPTTDEINAMDKALILYTDHEVPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAFKQFIEIGDPNRVQNWF 240 (367)
T ss_dssp SCCCHHHHHHHHHHHHHHSCCSCCHHHHHHHHHHHTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHCSGGGHHHHH
T ss_pred CCCCHHHHHHHHHHHEEECCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHH
T ss_conf 88506777776567400015788854300001451376422114667776045434673799999999633654237899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~i~GfGH~vy~~~DPR~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~pNvd~~~~~l~~~ 320 (367)
T d1o7xa_ 241 NDKVVNQKNRLMGFGHRVYKTYDPRAKIFKKLALTLIERNADARRYFEIAQKLEELGIKQFSSKGIYPNTDFYSGIVFYA 320 (367)
T ss_dssp HHHTTTTCCCCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTTTCCBCTTTTHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99986147754167875343566228999999999865046512699999999999998534589986838999999998
Q ss_pred ----------------------------------------------C
Q ss_conf ----------------------------------------------5
Q 000920 1082 ----------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------~ 1082 (1223)
.
T Consensus 321 lG~p~~~~~~lf~~~R~~G~~AH~~Eq~~~~~~l~RP~~~Y~Gp~~~ 367 (367)
T d1o7xa_ 321 LGFPVYMFTALFALSRTLGWLAHIIEYVEEQHRLIRPRALYVGPEYQ 367 (367)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCEEEECSCSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCC
T ss_conf 09786778899999999999999999985789841866510098999
|
| >d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase {Cushaw squash (Cucurbita moschata) [TaxId: 3662]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Glycerol-3-phosphate (1)-acyltransferase superfamily: Glycerol-3-phosphate (1)-acyltransferase family: Glycerol-3-phosphate (1)-acyltransferase domain: Glycerol-3-phosphate (1)-acyltransferase species: Cushaw squash (Cucurbita moschata) [TaxId: 3662]
Probab=100.00 E-value=0 Score=27633.66 Aligned_cols=1 Identities=0% Similarity=-0.989 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~i~~~~e~~~lp~~~~~~~~~~~~~y~~a~~~s~~~~a~e~~~~~~~~~~~~~~~~~~~p~~ 80 (367)
T d1iuqa_ 1 ASHSRKFLDVRSEEELLSCIKKETEAGKLPPNVAAGMEELYQNYRNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFV 80 (367)
T ss_dssp CCCCCGGGGCCSHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 98641322266589999999999855789857999999999999999973489995089999999999888741478743
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 f~~~h~~~~~~~~~~~~~~~~~~~li~~~~s~v~~~~~l~~~~Ekl~~g~nVIlvSNHqS~~D~~il~~ll~~~~~~l~r 160 (367)
T d1iuqa_ 81 FSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAE 160 (367)
T ss_dssp CCSEECCCCSSSCHHHHHHHHHGGGBCGGGCEEECHHHHHHHHHHHHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHH
T ss_pred CCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 67521000578778999999999986478777815789999999860799779987885400389999998512656210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~i~f~Ak~~l~~~Pl~~~f~~~~g~I~V~rk~~i~~~p~l~~~~~~~~~~al~~~~~lL~~Gg~~v~IfPEGTRsr~~~~ 240 (367)
T d1iuqa_ 161 NTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPS 240 (367)
T ss_dssp HCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTT
T ss_pred CEEEEEEHHHHCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
T ss_conf 33898545562257789999748878995465444563101002233268899999986168759999456764676666
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 dg~l~p~~F~~~~~~~~~~LA~~sgvP~hV~Pvai~~~d~~pP~~~v~~~ige~R~~~~~~V~i~~G~pId~~~~~~~~~ 320 (367)
T d1iuqa_ 241 TGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHK 320 (367)
T ss_dssp TCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEECGGGSCCC----------CCCCCBCCEEEECCCCCHHHHHHTSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCEEECHHHHCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCHHHHHHHCC
T ss_conf 66505665575505899999855799956856044133425887543320001036677861488679735666300022
Q ss_pred ----------------------------------------------C
Q ss_conf ----------------------------------------------5
Q 000920 1082 ----------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~e~~ea~~k~l~d~v~eq~~~Lk~ai~gk~~~~~~~p~~~~~qp~ 367 (367)
T d1iuqa_ 321 NPEEVREAYSKALFDSVAMQYNVLKTAISGKQGLGASTADVSLSQPW 367 (367)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCGGGGCCSSCCEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 63889999999999999999999999985689822258888878999
|
| >d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA {Ochrobactrum anthropi [TaxId: 529]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: DmpA/ArgJ-like superfamily: DmpA/ArgJ-like family: DmpA-like domain: L-aminopeptidase D-Ala-esterase/amidase DmpA species: Ochrobactrum anthropi [TaxId: 529]
Probab=100.00 E-value=0 Score=27633.24 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 r~r~R~lGi~~~~~pGp~N~ITDV~GV~VGH~T~~~g~~~~~~~~~~~TGvTvIlp~~g~~~~~~v~ag~~~~~g~~~~~ 80 (367)
T d1b65a_ 1 KPRARDLGLPFTGVTGPYNAITDVDGVGVGFQTIIENEPRPGRKRPARSGVTAILPHMQSETPVPVYAGVHRFNGNGEMT 80 (367)
T ss_dssp CCCGGGGTCCCCSCBCTTSSGGGSTTCEEEEEEEECSSCCTTCSSCCEEEEEEEETTTTCSSCCCEEEEEEEEEESSCBC
T ss_pred CCCHHHCCCCCCCCCCCCCCEECCCCCEECCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 97567539887888799875014798566223644687654679986711799971899756786055561368876678
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~v~e~g~~~~aIvLTggsa~Glaa~~~v~~~l~~~~~g~~~~~~~~vvPiV~~~~D~~l~d~~~~~~~~~~~~~A~~ 160 (367)
T d1b65a_ 81 GTHWIEDGGYFLGPVVITNTHGIGMAHHATVRWMVDRYASTYQTDDFLWIMPVVAETYDGALNDINGFPVTEADVRKALD 160 (367)
T ss_dssp SHHHHHHHCEECSCEEEEEGGGHHHHHHHHHHHHHHHTHHHHSSSSCCCCCCEEEEECCTTTSCGGGCCCCHHHHHHHHH
T ss_pred CHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 05653547753677987567248888789999999856888777885210451279980677876678988999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~A~~~~v~~G~VGAGtGa~~~~~KGGiGtASr~~~~~~~~~tVGaLV~~N~g~~~~~~~~g~p~g~~l~~~~~~~~~~~~ 240 (367)
T d1b65a_ 161 NVASGPVQEGNCGGGTGMITYGFKGGTGTASRVVEFGGRSFTIGALVQANHGQRDWLTIAGVPVGQHMRDGTPQSQLQER 240 (367)
T ss_dssp TCBSSCCCCBSCGGGTTCEETTEECEEEEEEEEEEETTEEEEEEEEEEECCCCGGGCCBTTBCHHHHCCTTCHHHHC---
T ss_pred HHHCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
T ss_conf 75228877887573211321356787521267887178835999999744788500240775200131445777777889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 nTtI~VVATDApL~~~ql~RlA~~A~~GlARai~p~ht~dGD~vfA~STg~~~~~~~~~~~~~~~~~l~~~~l~~lf~Aa 320 (367)
T d1b65a_ 241 GSIIVVLATDLPLMPHQLKRLARRASIGIGRNGTPGGNNSGDIFIAFSTANQRPMQHRSAPFLDVEMVNDEPLDTVYLAA 320 (367)
T ss_dssp -CEEEEEEECSCCCHHHHHHHHHTHHHHHHTTTCCCCTTCEEEEEEEECCSCCCCGGGSCSEEEEEEECSGGGHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHH
T ss_conf 98899999598189999999999865315312677779984779994057867766556554441004720008899999
Q ss_pred ----------------------------------------------C
Q ss_conf ----------------------------------------------5
Q 000920 1082 ----------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------~ 1082 (1223)
.
T Consensus 321 aea~eeAI~nal~~A~t~~G~~~~~~~~~alp~d~~~~~~~~~~~l~ 367 (367)
T d1b65a_ 321 VDSVEEAVVNAMIAAEDMGGTPFDRLLVQAIDHERLRAVLRQYGRLA 367 (367)
T ss_dssp HHHHHHHHHHHHHHCCCEECSTTCSCEECCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCC
T ss_conf 99999999999974677657589987741799999999999846679
|
| >d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp119 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=100.00 E-value=0 Score=27631.61 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~Y~~~~~lR~~~Pv~~~~~~w~vt~~~di~~vl~d~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~~~R 80 (367)
T d1ue8a_ 1 MYDWFKQMRKESPVYYDGKVWNLFKYEDCKMVLNDHKRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLTSDPPLHDELR 80 (367)
T ss_dssp CHHHHHHHHHHCSEEECSSCEEECCHHHHHHHHTCTTTEECCCSSTTTTHHHHHTTCCCCCCGGGSSGGGCCTTHHHHHH
T ss_pred CCHHHHHHHHCCCEEEECCEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 90899999856998844998998799999999669853537765567542224466432224555552006867875667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~f~~~~l~~~~i~~~~~~ll~~l~~~~d~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (367)
T d1ue8a_ 81 NLTADAFNPSNLPVDFVREVTVKLLSELDEEFDVIESFAIPLPILVISKMLGINPDVKKVKDWSDLVALRLGRADEIFSI 160 (367)
T ss_dssp HHHHGGGSGGGSCHHHHHHHHHHHHTTCCSEEEHHHHTTTHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTSSSSSTTTCC
T ss_pred HCCCCCCCHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 30133478665144999999999986303345316665543444210110464211026778888877620004799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~ag~ett~~~l~~~~~~l~~~~~~~~~~~~~~ 240 (367)
T d1ue8a_ 161 GRKYLELISFSKKELDSRKGKEIVDLTGKIANSNLSELEKEGYFILLMIAGNETTTNLIGNAIEDFTLYNSWDYVREKGA 240 (367)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHH
T ss_conf 99999999999999986423431012344441347777764133210010111222101023777633000111345556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~ai~E~lR~~p~~~~~~r~~~~~~~l~g~~ip~G~~V~~~~~~~~rdp~~~~dP~~F~P~R~~~~~l~FG~G~r~C~G~ 320 (367)
T d1ue8a_ 241 LKAVEEALRFSPPVMRTIRVTKEKVKIRDQVIDEGELVRVWIASANRDEEVFKDPDSFIPDRTPNPHLSFGSGIHLCLGA 320 (367)
T ss_dssp HHHHHHHHHHSCSBCCEEEEESSCEEETTEEECSSCEEEECHHHHTTCTTTSSSTTSCCTTCCSCCCCTTCCSTTSCTTH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 77877645205532334432344310221134048754433210035766689722018798999988779987188119
Q ss_pred ----------------------------------------------C
Q ss_conf ----------------------------------------------5
Q 000920 1082 ----------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~lA~~e~~~~l~~Ll~rf~~~~~~~~~~~~~~~~~g~~~l~Vr~~r~ 367 (367)
T d1ue8a_ 321 PLARLEARIALEEFAKKFRVKEIVKKEKIDNEVLNGYRKLVVRVERT 367 (367)
T ss_dssp HHHHHHHHHHHHHHHHHEEEEEEEEEEECSCSSBCCEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 99999999999999985896634898534587758975236999979
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=100.00 E-value=0 Score=27631.65 Aligned_cols=1 Identities=100% Similarity=2.231 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 ~~v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
T d1n4wa1 1 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRN 80 (367)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCB
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 95709996769899999999977959199991689988766565422222344544333334433543321235677766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~~~~~~~~l~pyy~~ae~~l~~~~~~~~~~~~~ 160 (367)
T d1n4wa1 81 IDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDT 160 (367)
T ss_dssp CCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCEECCEEECCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 66566740223688652135776378873224360006866742232245738899999999998829877888866667
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~k~s~~~~yl~~a~~~gn~~i~~~t 240 (367)
T d1n4wa1 161 EWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLH 240 (367)
T ss_dssp GGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSSBCCTTTTHHHHHHHTTSEEEEESE
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCC
T ss_conf 78728899999998738642235323224875555655567631246433445654467667623789758980998787
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~Tp~LLl~S~~~g~l~~~s~~lG~~~~~~l~~~~~~ 320 (367)
T d1n4wa1 241 QVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRARDTGTLPNLNSEVGAGWGCVLGKATDD 320 (367)
T ss_dssp EEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHHHHHHTTSSTTCCTTTTCCBSSCTTTTBCT
T ss_pred EEEEEEECCCCCEEEEEEEECCCCCCEEEEEEECCEEEEECCHHCCHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCC
T ss_conf 89998985899889999997777752049998648999906523079999847777999986676667865545644456
Q ss_pred ----------------------------------------------C
Q ss_conf ----------------------------------------------5
Q 000920 1082 ----------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~g~~~~~~~~~~~~g~~i~~~~~~~p~~t~~ala~~~~~~~~~~~~~ 367 (367)
T d1n4wa1 321 YGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQDVT 367 (367)
T ss_dssp TSBBTTCSSEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 66435877730347743568687893340799998799999885459
|
| >d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Alpha-L-arabinofuranosidase, catalytic domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=27633.89 Aligned_cols=1 Identities=0% Similarity=0.636 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~i~~~i~g~f~E~lg~~i~~g~~~~~~~~~~~~G~R~dv~~~l~~l~~~~lR~PGG~~~~~y~W~~~iGp~~~Rp~~~~~ 80 (367)
T d1qw9a2 1 EIDKRIYGSFIEHLGRAVYGGIYEPGHPQADENGFRQDVIELVKELQVPIIRYPGGNFVSGYNWEDGVGPKEQRPRRLDL 80 (367)
T ss_dssp ECCGGGGEEECCSSTTSTBTTTBCTTCTTBCTTSBBHHHHHHHHHHTCCEEEESCSGGGGGCCGGGGSSCGGGCCCEEET
T ss_pred CCCHHHCCCHHHHCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf 98824424406543573207664799998887665999999999639987865886136705212365986778886588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~w~~~~~~~~G~~Ef~~~~~~~gaep~~~vn~g~~~~~~a~d~vey~n~~~~t~~~~~R~~~G~~~P~~v~yweIGNE~~ 160 (367)
T d1qw9a2 81 AWKSVETNEIGLNEFMDWAKMVGAEVNMAVNLGTRGIDAARNLVEYCNHPSGSYYSDLRIAHGYKEPHKIKTWCLGNAMD 160 (367)
T ss_dssp TTTEEECCSSCHHHHHHHHHHHTCEEEEEECCSSCCHHHHHHHHHHHHCCSSSHHHHHHHHTTCCSCCCCCEEEESSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCC
T ss_conf 88876767777899999999809838999837974099999999997068988889999871887888732899635111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 g~~~~g~~~~~~Y~~~~~~f~~amk~~dP~i~lia~g~~~~~~~~~~~w~~~vl~~~~~~iD~is~H~Y~~~~~~~~~~~ 240 (367)
T d1qw9a2 161 GPWQIGHKTAVEYGRIACEAAKVMKWVDPTIELVVCGSSNRNMPTFAEWEATVLDHTYDHVDYISLHQYYGNRDNDTANY 240 (367)
T ss_dssp STTSTTCCCHHHHHHHHHHHHHHHHHHCTTCEEEECCCSCTTSTTTTHHHHHHHHHHGGGCSEEEEEEEECCTTCCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 56555788999999999999998760299836999868877776555289999861311577022347778875512455
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~iavdEwn~wy~~~~~~~~~~~~~~~~~~l~~~~tl~~AL~~A~~L~~~ 320 (367)
T d1qw9a2 241 LALSLEMDDFIRSVVAIADYVKAKKRSKKTIHLSFDEWNVWYHSNEADKLIEPWTVAPPLLEDIYNFEDALLVGCMLITL 320 (367)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHTCSCCCEEEEEEEEECCTTHHHHTTCCTTBSSCCTTCCCCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 55677799999999999999874046778851886224564454555555554233755312237699999999999999
Q ss_pred ----------------------------------------------C
Q ss_conf ----------------------------------------------5
Q 000920 1082 ----------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~R~sD~V~mA~~A~lvNvl~~i~~~~~~~~~~~~~y~v~~~~s~~~r 367 (367)
T d1qw9a2 321 MKHADRVKIACLAQLVNVIAPIMTEKNGPAWKQTIYYPFMHASVYGR 367 (367)
T ss_dssp HHTTTTEEEEEEECSBSSSCSEEECTTSCEEECTTHHHHHHHHHHCC
T ss_pred HHCCCEEEEEEHHHHHHHHCCEEECCCCCEEECCCHHHHHHHHHHCC
T ss_conf 97259556540337664102148659998610751199999998529
|
| >d1ursa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: D-maltodextrin-binding protein, MBP species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=100.00 E-value=0 Score=27629.25 Aligned_cols=1 Identities=0% Similarity=-0.692 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 qTIt~w~~~~~~~~~~~~~~~~~F~~~~p~~~v~~~~~~~~~~~~~l~~~~~ag~~pDi~~~~~~~~~~~~~~~g~l~~L 80 (367)
T d1ursa_ 1 QTITVWSWQTGPELQDVKQIAAQWAKAHGDKVIVVDQSSNPKGFQFYATAARTGKGPDVVFGMPHDNNGVFAEEGLMAPV 80 (367)
T ss_dssp CEEEEEESCCHHHHHHHHHHHHHHHHHHCCEEEEEECTTCTTCTTHHHHHHHTTCCCSEEEEEEGGGHHHHHHTTCBCCC
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCCC
T ss_conf 97999827884579999999999999879989999848828999999999966999839998582789999987995400
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dG~~y~iP~~~~~~~l~yNk~~~~~~p~T~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (367)
T d1ursa_ 81 PSGVLNTGLYAPNTIDAIKVNGTMYSVPVSVQVAAIYYNKKLVPQPPQTWAEFVKDANAHGFMYDQANLYFDYAIIGGYG 160 (367)
T ss_dssp CTTSCCGGGSCHHHHHTTEETTEECSEEEEEEECEEEEETTTCSSCCCSHHHHHHHHHHHCEECCTTCHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCHHHHHHCEECCEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 24554411479778854638877876420354158887401023431008999999866303667777521068887541
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~ 240 (367)
T d1ursa_ 161 GYVFKDNNGTLDPNNIGLDTPGAVQAYTLMRDMVSKYHWMTPSTNGSIAKAEFLAGKIGMYVSGPWDTADIEKAKIDFGV 240 (367)
T ss_dssp CEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTSCSCCTTCCHHHHHHHHHTTCCSEEEECGGGHHHHHHTTCCEEE
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 02211588644543135588889999999999986136564222037788888527741103366665444441156326
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~P~~~~g~~~~~~~~~~~~~i~~~s~~~e~A~~fl~~l~s~e~q~~~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~~~ 320 (367)
T d1ursa_ 241 TPWPTLPNGKHATPFLGVITAFVNKESKTQAADWSLVQALTSAQAQQMYFRDSQQIPALLSVQRSSAVQSSPTFKAFVEQ 320 (367)
T ss_dssp ECCCCCTTSCCCCCEEEEEEEEEBTTCSCHHHHHHHHHHHTSHHHHHHHHHHHCCEESSHHHHTSHHHHTCHHHHHHHHH
T ss_pred EECCCCCCCCCCCEECCCCCCEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHCHHHHHCHHHHHHHHH
T ss_conf 63365788664310005654010210131688999999850699999999971988873767739553209389999999
Q ss_pred ----------------------------------------------C
Q ss_conf ----------------------------------------------5
Q 000920 1082 ----------------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~G~~t~~~al~~~~~~i~kg 367 (367)
T d1ursa_ 321 LRYAVPMPNIPQMQAVWQAMSILQNIIAGKVSPEQGAKDFVQNIQKG 367 (367)
T ss_dssp GGGCEECCCSTHHHHHHHHTTHHHHHHHTSSCHHHHHHHHHHHHHC-
T ss_pred HHHCEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 95083178785489999999999999829899999999999998576
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27561.13 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 80 (366)
T d1hz4a_ 1 EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM 80 (366)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 94430566213999999999999888999999999999854868996799999999999999879999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~ 160 (366)
T d1hz4a_ 81 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 160 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 87501148999999888788788888999998899999986750341256788899888789998145666689999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 240 (366)
T d1hz4a_ 161 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240 (366)
T ss_dssp HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 87663002468999988888887646678888999999999987311572699999999999986044898999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 76224666777889999999987587999999999999887642667479999999999999878999999999999997
Q ss_pred ---------------------------------------------C
Q ss_conf ---------------------------------------------5
Q 000920 1082 ---------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~~a~~ll~~in 366 (366)
T d1hz4a_ 321 ANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREIN 366 (366)
T ss_dssp HHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 6531829999999999999999998659986999999999987559
|
| >d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: SIS domain superfamily: SIS domain family: double-SIS domain domain: "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27557.74 Aligned_cols=1 Identities=100% Similarity=2.597 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 ~~~~~~~~~m~kEI~eQP~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~vG~GsS~~aa~~~~~~~~~~~~~~v 80 (366)
T d1moqa_ 1 GDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPC 80 (366)
T ss_dssp CCCTTCSSHHHHHHHTHHHHHHHHHTTSEETTEECCGGGCSSHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999861788999889999999999876368620543103068887308889999822899999999999998439204
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~sef~~~~~~~~~~~lvI~iSqSG~s~~ti~a~~~a~~~g~~~ti~iT~~~~S~la~~ad~~i~~~~g~E~~~~~T 160 (366)
T d1moqa_ 81 DVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVAST 160 (366)
T ss_dssp EEEEHHHHHTSCCCCCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCS
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCEEECCCCCCCCHHH
T ss_conf 99965445244345699987998620589635899999999749973899989999978986074632356654220000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 k~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~G~~~g~A~E~ 240 (366)
T d1moqa_ 161 KAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLSQDKRIEALAEDFSDKHHALFLGRGDQYPIALEG 240 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTCSEEEEEECGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
T ss_conf 57899999999999986442032026778779999998876889987777899899997367526996577758999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i 320 (366)
T d1moqa_ 241 ALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHII 320 (366)
T ss_dssp HHHHHHHHCCEEEEEEGGGGGGTGGGGCSTTSCEEEESCCHHHHHHHHHHHHHTGGGTCCEEEEEEGGGCCCCBTTEEEE
T ss_pred HHHHHHHHHHEEEEECHHHHHCCCHHEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEE
T ss_conf 99999887674785037776277430230796089846898177999999999997498299996687322445775699
Q ss_pred ---------------------------------------------C
Q ss_conf ---------------------------------------------5
Q 000920 1082 ---------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~p~~~~~l~pl~~~ip~Qlla~~~A~~~G~~PD~Pr~L~K~vtve 366 (366)
T d1moqa_ 321 EMPHVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE 366 (366)
T ss_dssp EECCCCGGGHHHHHHHHHHHHHHHHHHHHTCCSSSCTTCCSCCCCC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEC
T ss_conf 6699756787999999999999999998198999999998785319
|
| >d1h6za1 c.1.12.2 (A:538-903) Pyruvate phosphate dikinase, C-terminal domain {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate phosphate dikinase, C-terminal domain domain: Pyruvate phosphate dikinase, C-terminal domain species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=0 Score=27557.20 Aligned_cols=1 Identities=100% Similarity=0.736 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~w~d~~r~i~v~aNi~~~~d~~~a~~~GAdGIGL~RtEflfl~~~~~p~~~e~i~~~~~~~~~~~l~ 80 (366)
T d1h6za1 1 RSPDLKGSFQTILQWCQEMKRLGVRTNADTPADAAKARSFGAEGVGLCRTEHMFFEGSRINFIREMILADSASGRKAALD 80 (366)
T ss_dssp CCSCSTTHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHTTTCCSEEECBCSGGGSTTTHHHHHHHHHSCSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHCCCCEECHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHH
T ss_conf 98987458999999875378669997089999999999759984503887998618987882898763235577999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 k~~~~~~~~y~~i~~a~~~~pV~iRtlD~g~dk~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~E~NP~LG~RGiR~~L~ 160 (366)
T d1h6za1 81 KLLPIQRADFVGILRAMRGLPVTIRLLDPPLHEFVPHDAAAQFELAQKLGMPAEKVRNRVNALHELNPMLGHRGCRLGIT 160 (366)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCEEEECCCSCGGGGCCSSCSSTTTTSCSSSCCHHHHHHHHHSSCCSSSTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCC
T ss_conf 87788999999999970899879996224322357850555543111003543555532025557884123456655414
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~p~lf~~QlrAilrA~~~~~~~g~~~~l~iMiP~v~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~iG~MiEvPsaal~~ 240 (366)
T d1h6za1 161 YPEIYNMQVRAIIEAAIAVSEEGSSVIPEIMVPLVGKKEELSLIREEVVKTAEAVITKSGKRVHYTVGTMIEVPRAAVTA 240 (366)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTTCCCCEEEEECCCCSHHHHHHHHHHHHHHHHHHHHHSCSCCCCEEEEEECSHHHHHTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHH
T ss_conf 80667999999999999987528865401221206679999989999989999887504876441367641213899869
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 d~~a~~vDF~SIGTNDLtQy~la~dR~n~~v~~~~~~~~~~~~~~p~~~~~~~av~~lI~~a~~~~r~~~~~i~vsiCGE 320 (366)
T d1h6za1 241 DSIAQKADFFSFGTNDLTQMGCGFSRDDAGPFLRHYGNLGIYAQDPFQSIDQEGIGELVRIAVTKGRRVKPMLKMGICGE 320 (366)
T ss_dssp HHHTTTCSEEEECTTHHHHHHHTCCGGGCHHHHTTTTTTCSSSSCTTTSCCTTTHHHHHHHHHHHHHHHSTTCEEEECSG
T ss_pred HHHHHHCCEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 99863050899601046567765301551134567765200010556606699999999999998775189981997064
Q ss_pred ---------------------------------------------C
Q ss_conf ---------------------------------------------5
Q 000920 1082 ---------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~a~dp~~~~~Li~lGi~~lSvsp~~ip~vk~a~a~~~~~~~r~~~~ 366 (366)
T d1h6za1 321 HGGDPATIGFCHKVGLDYVSCSPFRVPVAIVAAAHASIKDRRAAMK 366 (366)
T ss_dssp GGGCHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 0239999999998699979989277699999999854998787459
|
| >d2bvya2 c.1.8.3 (A:5-370) Mannanase A, ManA {Cellulomonas fimi [TaxId: 1708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Mannanase A, ManA species: Cellulomonas fimi [TaxId: 1708]
Probab=100.00 E-value=0 Score=27555.65 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 t~~lvd~~At~~t~~L~~~L~~~~g~~il~Gqq~~~~~g~~~~~~~~~~~~v~~~tG~yPAv~G~D~~~~~~~~~~~~~~ 80 (366)
T d2bvya2 1 TIAIVDADATAETRSLLSYLDGVRGEGILFGHQHTTSFGLTTGPTDGTTSDVKNVTGDFPAVFGWDTLIIEGNERPGLAE 80 (366)
T ss_dssp CBCCSSTTCCHHHHHHHHHHHHHTTTCEEEEEETTTTSCSSSCSCCSSCCHHHHHHSSCBSEEEEETTTTTTSSTTCCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 96665888799999999999985489879986146444666687426799999976888776443114567874433223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~Ggivt~~wH~~nP~~g~~~~~~~~~~~~~vlpg~~~~~~~~~~l~~ia~~a~~Lk~~~~~ 160 (366)
T d2bvya2 81 NTRDENIALFADYIRKADAIGGVNTVSAHVENFVTGGSFYDTSGDTLRAVLPGGSHHAELVAYLDDIAELADASRRDDGT 160 (366)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEECCCCCTTTSCCTTCCTTCHHHHHSTTSTTHHHHHHHHHHHHHHHHHCBCTTSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 67311489999999976306997899971377888986557741689873689970689999999999999998750478
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~VPVl~Rp~HE~nG~WfwWg~~~~~p~~y~~lwr~~~d~l~~~~g~~Nliwvwsp~~~~~~~~~~~~~~YPGDdyVDivG 240 (366)
T d2bvya2 161 LIPIVFRPWHENAGSWFWWGAAYGSPGEYQELYRFTVEYLRDVKGVSNFLYAWGPGGGFGGNRDVYLRTYPGDAFVDVLG 240 (366)
T ss_dssp BCCEEEECSTTTTSSSSTTSTTSSCHHHHHHHHHHHHHHHHHTSCCCSEEEEECCCSCCTTCHHHHGGGCCCTTTCSEEC
T ss_pred CCCEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHCCCCCEEEEEE
T ss_conf 86089831220379855057889998999999999999999725876169986168778865211665288987478988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~D~Y~~~~~~~~~~~~~~~l~~~~~~a~~~~Kp~altE~G~~~~~~~~~~~~~~W~~~~l~~i~~~~~~~~~~y~~~W~n 320 (366)
T d2bvya2 241 LDTYDSTGSDAFLAGLVADLRMIAEIADEKGKVSAFTEFGVSGGVGTNGSSPAQWFTKVLAAIKADPVASRNAYMETWAN 320 (366)
T ss_dssp CEEEESSCCHHHHHHHHHHHHHHHHHHHHHTCEECBCEEEETTCSSTTSCCCTTHHHHHHHHHHHSTTTTCCSEEEECCC
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 74457888752278999999999999873699579942002578644678742589999999873721001048988548
Q ss_pred ---------------------------------------------C
Q ss_conf ---------------------------------------------5
Q 000920 1082 ---------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~~~~~p~~g~~s~~dF~~~~~dp~~~f~~~l~~~y~~~~~~~~ 366 (366)
T d2bvya2 321 FDAGQHFVPVPGDALLEDFQAYAADPFTLFASEVTGAFDRTVAAAP 366 (366)
T ss_dssp CSSSSCSSCCTTCTTHHHHHHHHHSTTEEBGGGCCSTTCCCCCBCC
T ss_pred CCCCCCCEECCCCCCHHHHHHHHCCCHHHHHHHCCHHHCCCCCCCC
T ss_conf 9988761236997469999999759566542227032147666797
|
| >d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Glycerol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=27555.56 Aligned_cols=1 Identities=100% Similarity=1.234 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~f~~P~~~~~G~gal~~l~~~l~~~g~r~lvvtd~~~~~~~~~~l~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~ 80 (366)
T d1jq5a_ 1 AAERVFISPAKYVQGKNVITKIANYLEGIGNKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANI 80 (366)
T ss_dssp CCCBCCCCCSEEEEETTGGGGHHHHHTTTCSEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHH
T ss_pred CCCCEEECCCEEEEECCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99858958963999039999999999974994899989857899999999999877996999981899999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~D~IiavGGGs~iD~aK~iA~~~~~p~i~IPTT~gtgse~t~~avi~~~~~~~~~~~~~~~~P~~vi~Dp~l~~t 160 (366)
T d1jq5a_ 81 ARKAEAAIVIGVGGGKTLDTAKAVADELDAYIVIVPTAASTDAPTSALSVIYSDDGVFESYRFYKKNPDLVLVDTKIIAN 160 (366)
T ss_dssp HHHTTCSEEEEEESHHHHHHHHHHHHHHTCEEEEEESSCCSSCTTCSEEEEECTTSCEEEEEECSSCCSEEEEEHHHHHT
T ss_pred HHCCCCCEEEEECCCCCCCCHHEEEECCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCHHH
T ss_conf 62038868998168864422000120466535402434434320013212323567422110114557789998610432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 lP~~~~~sg~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (366)
T d1jq5a_ 161 APPRLLASGIADALATWVEARSVIKSGGKTMAGGIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVTPALEAVVEANTL 240 (366)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 32788898677788899999998860654323034479999999999999987468876667635658999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~g~~~~~~~~~~~H~i~h~l~~~~g~~~~~~HG~~va~g~~~~~~l~~~~~~~~~~~~~l~~~lglP~~L~dlgi~~~~ 320 (366)
T d1jq5a_ 241 LSGLGFESGGLAAAHAIHNGFTALEGEIHHLTHGEKVAFGTLVQLALEEHSQQEIERYIELYLCLDLPVTLEDIKLKDAS 320 (366)
T ss_dssp HHHHHHHHHCCCHHHHHHHHGGGSCSGGGGSCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCCCSTTTTTCTTCC
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCC
T ss_conf 60433467876645211012676237764767633779999999998428899999999999986999999994989777
Q ss_pred ---------------------------------------------C
Q ss_conf ---------------------------------------------5
Q 000920 1082 ---------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~l~~ia~~a~~~~~~~~nP~~~t~edi~~il~~a~~~~~~~~~~ 366 (366)
T d1jq5a_ 321 REDILKVAKAATAEGETIHNAFNVTADDVADAIFAADQYAKAYKEK 366 (366)
T ss_dssp HHHHHHHHHHHTSTTCGGGGTCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999840874147999999999999999999999987209
|
| >d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome P450 superfamily: Cytochrome P450 family: Cytochrome P450 domain: Cyp119 species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=27555.51 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~y~~~~~lR~~~Pv~~~~~~w~vt~~~~v~~vl~d~~~f~s~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~~~R 80 (366)
T d1io7a_ 1 MYDWFSEMRKKDPVYYDGNIWQVFSYRYTKEVLNNFSKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSDPPLHDELR 80 (366)
T ss_dssp CHHHHHHHHHHCSEEECSSCEEECSHHHHHHHHHCTTTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGCCTTHHHHHH
T ss_pred CCHHHHHHHHCCCEEEECCEEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHH
T ss_conf 90899999835998873998999689999999659400336764555554433355432235555550117857888987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~f~~~~l~~~~~~i~~~a~~ll~~~~~~~~D~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (366)
T d1io7a_ 81 SMSADIFSPQKLQTLETFIRETTRSLLDSIDPREDDIVKKLAVPLPIIVISKILGLPIEDKEKFKEWSDLVAFRLGKPGE 160 (366)
T ss_dssp GGGTTTTCHHHHHHHHHHHHHHHHHHHHTCCTTSEEHHHHTTTHHHHHHHHHHHTCCGGGHHHHHHHGGGCTTSCCCTTC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 76145565130677888899999999873135563210000000122011001687345799999999999764030146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~l~aG~~tt~~~l~~~l~~l~~~~~~~~~~~~~l~ 240 (366)
T d1io7a_ 161 IFELGKKYLELIGYVKDHLNSGTEVVSRVVNSNLSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRFNLWQRIREENLY 240 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCHHHHHHHTSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTCHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 78888889887665420222045665542014589999999999999714420377999999874313322233442001
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~ee~~r~~~~~~~~~R~~~~d~~i~g~~ip~G~~V~~~~~~~~rdp~~~~dP~~F~PeR~~~~~l~FG~G~r~C~G~ 320 (366)
T d1io7a_ 241 LKAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDRNPNPHLSFGSGIHLCLGA 320 (366)
T ss_dssp HHHHHHHHHHSCSBCCEEEEESSCEEETTEEECTTCEEEECHHHHTTCTTTSTTTTSCCTTCCSCCCCTTCCGGGSCTTH
T ss_pred HHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 00046553000234300010210024333436789777332010025611258665418898999988788986488369
Q ss_pred ---------------------------------------------C
Q ss_conf ---------------------------------------------5
Q 000920 1082 ---------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~lA~~e~~~~l~~ll~rf~~~~~~~~~~~~~~~~~~~~~lpVrl~~ 366 (366)
T d1io7a_ 321 PLARLEARIAIEEFSKRFRHIEILDTEKVPNEVLNGYKRLVVRLKS 366 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEEEEECCCSSBCCEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEEEEEC
T ss_conf 9999999999999999779882089865787764787554799969
|
| >d1u5ua_ e.5.1.2 (A:) Allene oxide synthase-lipoxygenase protein, N-terminal domain {Black sea rod (Plexaura homomalla) [TaxId: 47982]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Heme-dependent catalase-like superfamily: Heme-dependent catalase-like family: Allene oxide synthase domain: Allene oxide synthase-lipoxygenase protein, N-terminal domain species: Black sea rod (Plexaura homomalla) [TaxId: 47982]
Probab=100.00 E-value=0 Score=27552.58 Aligned_cols=1 Identities=0% Similarity=-1.889 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~HakG~ga~G~f~v~~d 80 (366)
T d1u5ua_ 1 WKNFGFEIFGEKYGQEELEKRIKDEHTPPPDSPVFGGLKLKLKKEKFKTLFTLGTTLKGFRRATHTVGTGGIGEITIVND 80 (366)
T ss_dssp CCCCHHHHHHHHHCHHHHHHHHHHHTSCCCCCTTTHHHHHHHHHHHHHHHHHHHHHHTTTSCSSSCSEEEEEEEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECC
T ss_conf 97620778877632577664000457899874223475431189999999865411468756654775645999998079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~f~~G~~~Pv~vRfS~~~G~~D~~~d~RG~AiKf~~~~ge~~~D~v~~n~pvF~~rd~~~F~~~~~a~k~~p~ 160 (366)
T d1u5ua_ 81 PKFPEHEFFTAGRTFPARLRHANLKYPDDAGADARSFSIKFADSDSDGPLDIVMNTGEANIFWNSPSLEDFVPVEEGDAA 160 (366)
T ss_dssp CCSCCCSSSCTTCEEEEEEEEEBSSCSCTTSEECBEEEEESSSSSSCCSCEEEEEESSSCSCCSHHHHHHHTTCCTTHHH
T ss_pred CHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCHH
T ss_conf 01655876179975679999258888865567877369987658987325786337774304798886888860587637
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~f~~~~Pe~~~~~~~~~r~~P~s~~~~~y~s~~tf~fvn~~G~~~yvK~~~~P~~~~~~~~~e~~~~~~~~~~~~~~~~ 240 (366)
T d1u5ua_ 161 EEYVYKNPYYYYNLVEALRRAPDTFAHLYYYSQVTMPFKAKDGKVRYCRYRALPGDVDIKEEDESGRLTEEEQRKIWIFS 240 (366)
T ss_dssp HHHHTTCHHHHHHHHHHCEESCSCGGGCCEECCSCEEEECTTCCEEEEEEEEEESSSCCCGGGCTTCCCHHHHTTTTCCS
T ss_pred HHHHHCCHHHHHHHHHHCCCCCCCCCCCCEECCCCEEEECCCCCEEEEEEEEEECCCCCCCCHHHHHCCCHHHHHHHCCC
T ss_conf 89987098999999985577999834475002261787847898899999998457776642444323722344321246
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~d~Lr~dl~~~l~~g~~~~~l~vQl~~~~d~d~~~i~D~Tk~Wpe~~~P~~~vG~ltl~~~~~~~e~EqlaF 320 (366)
T d1u5ua_ 241 RHENEKRPDDYLRKEYVERLQKGPVNYRLQIQIHEASPDDTATIFHAGILWDKETHPWFDLAKVSIKTPLSPDVLEKTAF 320 (366)
T ss_dssp CCTTCCSCTTHHHHHHHHHHHHSCEEEEEEEEEEECCTTCCGGGGCTTSCCCTTTSCCEEEEEEEEEEECCHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHCC
T ss_conf 54102576377899999998679954999999546354789998887516886567637879999799897057576524
Q ss_pred ---------------------------------------------C
Q ss_conf ---------------------------------------------5
Q 000920 1082 ---------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~P~~~~pgi~~~~~~~~~d~~si~~~R~~vY~~s~~~R~~~~~~~~ 366 (366)
T d1u5ua_ 321 NIANQPASLGLLEAKSPEDYNSIGELRVAVYTWVQHLRKLKIGSLV 366 (366)
T ss_dssp CTTCCCTTSCCCCCSSSSSTTHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8755699837778522243442888999999999998754501569
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=27550.99 Aligned_cols=1 Identities=0% Similarity=-1.423 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~r~~~~~~~~~~~i~~~g~~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a 80 (366)
T d2aeua1 1 LRLEKARKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLNTYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSA 80 (366)
T ss_dssp CCCCHHHHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHTSTTHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHH
T ss_pred CCHHHHHHHHHHHHCHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH
T ss_conf 96366788899985633330275432688888864889999998438245689999999987068984479996889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~l~al~~~~~vi~~~~~~~~~~~~~~~~l~g~~~v~~~d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia 160 (366)
T d2aeua1 81 ILATILALKPKKVIHYLPELPGHPSIERSCKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTA 160 (366)
T ss_dssp HHHHHHHHCCSEEEEECSSSSCCTHHHHHHHHTTCEEEEESCHHHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 99999983899979994699862419988976288677799999999736877607999945888867879999999874
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g~~~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~ 240 (366)
T d2aeua1 161 KNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIY 240 (366)
T ss_dssp HHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCHHHCCCEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 00817899956721432364468987662861787136444545521589706778999999972235568779899888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV 320 (366)
T d2aeua1 241 RALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGI 320 (366)
T ss_dssp HHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEECCCCHHHHHHHHHHHCCE
T ss_conf 89986049999999999999999988604111133566667543457630110477760102456879999999981988
Q ss_pred ---------------------------------------------C
Q ss_conf ---------------------------------------------5
Q 000920 1082 ---------------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~ip~~~~p~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK~~~~~ 366 (366)
T d2aeua1 321 ITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAFKS 366 (366)
T ss_dssp ECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCCCCEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 9997898889998799951655411089999999999999998459
|
| >d1fn9a_ d.196.1.1 (A:) Outer capsid protein sigma 3 {Reovirus [TaxId: 10891]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Outer capsid protein sigma 3 superfamily: Outer capsid protein sigma 3 family: Outer capsid protein sigma 3 domain: Outer capsid protein sigma 3 species: Reovirus [TaxId: 10891]
Probab=100.00 E-value=0 Score=27486.97 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 MEVRlPNfHSvVE~I~nSYe~rp~~yst~egWd~~~f~~PDVIkVG~AYCCaQCCGVLGapp~~~~~FPHHrCHQq~~R~ 80 (365)
T d1fn9a_ 1 MEVCLPNGHQVVDLINNAFEGRVSIYSAQEGWDKTISAQPDMMVCGGAVVCMHCLGVVGSLQRKLKHLPHHRCNQQIRHQ 80 (365)
T ss_dssp CCCCCCCHHHHHHHHHHHTTTCCCEEBTTTBTCCSSCCCCSEEEETTEEEETTTTEEEEEGGGTCCSCCCCCCCCCCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 96446771149999998874577644520131454314876599867587400154336786678607613676776404
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 dtPLLrfvgRvTaH~KRgmLd~~a~~~~~i~D~~~e~~~rv~~egg~lvE~~~~~lD~~s~~~SI~sdWT~PLe~~~dlD 160 (365)
T d1fn9a_ 81 DYVDVQFADRVTAHWKRGMLSFVAQMHEMMNDVSPDDLDRVRTEGGSLVELNWLQVDPNSMFRSIHSSWTDPLQVVDDLD 160 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCCEEEECCGGGSSTTSTTTCTTCCTTSCCCCCTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHCCCCCCHHCCCCCC
T ss_conf 75577655578887765279999999999873077776676636886331333421606653334304677201014420
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 tr~D~~~tal~~MIDsSdl~pnf~mrdpshafngvkl~gdarqt~fsrtf~~rsslewgvmvydysele~dp~kgr~yr~ 240 (365)
T d1fn9a_ 161 TKLDQYWTALNLMIDSSDLIPNFMMRDPSHAFNGVKLGGDARQTQFSRTFDSRSSLEWGVMVYDYSELEHDPSKGRAYRK 240 (365)
T ss_dssp HHHHHHHHHHHHHHHHTTCEESSEESCTHHHHTTSCBCGGGGGCCCCSSCCTTSCCCCCCEEECCHHHHHCGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHCCCEEECCCCCCCCCCCCCCCCCCEEEEEEEEEHHHHCCCCCCCCHHHH
T ss_conf 35789999888600165305332415833322662005740002000025776631444799765663368544502355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 elvtpardfghfglshysrattp~lgkmpavfsgmltgnckmyp~i~gtak~kt~~kl~~avn~~wgvekirya~gpgg~ 320 (365)
T d1fn9a_ 241 ELVTPARDFGHFGLSHYSRATTPILGKMPAVFSGMLTGNCKMYPFIKGTAKLKTVRKLVEAVNHAWGVEKIRYALGPGGM 320 (365)
T ss_dssp HHTSTHHHHCCGGGCCCCEEECCCSTTCCEEECCGGGTSCCEEECCCHHHHHGGGHHHHHHHHHHSCHHHHHHHHCTTHH
T ss_pred HHCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCC
T ss_conf 53673021364441000223671002562565310147621431023620024378899987745403420221168863
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------5
Q 000920 1082 --------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------~ 1082 (1223)
-
T Consensus 321 tgwy~rtmqqapivltpa~ltmfpdt~kfgd~~~pvmigdpmi~g 365 (365)
T d1fn9a_ 321 TGWYNRTMQQAPIVLTPAALTMFPDTIKFGDLNYPVMIGDPMILG 365 (365)
T ss_dssp HHHHHHHHHHHHHHTSCGGGGCCCSSCSSCSSSSCEEECCCEEEC
T ss_pred CHHHHHHHHHCCEEECHHHHCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf 324443453088673468850277742135667863317864369
|
| >d2pnwa1 b.52.1.4 (A:5-369) Membrane-bound lytic murein transglycosylase A, MLTA {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double psi beta-barrel superfamily: Barwin-like endoglucanases family: MLTA-like domain: Membrane-bound lytic murein transglycosylase A, MLTA species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=0 Score=27484.23 Aligned_cols=1 Identities=0% Similarity=-0.826 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 f~l~pvsf~~LPGW~~Dd~~~al~Af~~SC~~l~~~~~~~~~~~~~t~~~~~~~c~~a~~~~~~~~~~aR~Ffe~~F~py 80 (365)
T d2pnwa1 1 FSIDEVSFRDLPGWGQDDPRKLFPAMATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVNSPEQARQFFETNSVPF 80 (365)
T ss_dssp CEEEECCGGGSTTGGGCCCTTHHHHHHHHHHHHTSSCCCCCCTTCCCHHHHHHHHHHHHHCCCCSHHHHHHHHHHHEEEE
T ss_pred CCCEECCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCEEE
T ss_conf 96337188778894112499999999999998721785545666778999999999998535699899999999718899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~v~~~~~~~Gl~TGYYEP~l~gS~~~~~~y~~PlY~~P~dLv~vdl~~f~~~l~~~~~~gR~~~~~~~py~~R~~I~~g~ 160 (365)
T d2pnwa1 81 RISPAQGKSGFVTAFYEPELEVSATPDDVWRYPIYRRPPELVDIDNDNRPDGFDPSYAFGKADEEGISYFPDRRAIDEGC 160 (365)
T ss_dssp EEEC----CEEEEEEEECEEEEESSCCSSSCEEEEBCCTTEEECCTTTCCTTCCTTCCEEEEETTEEECCCCHHHHHTTT
T ss_pred EECCCCCCCEEEEEEEEEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCC
T ss_conf 94048987536898667767000378988987744689531006622255434665302443168766777445554465
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 l~~~g~elaw~~d~vd~fflqIQGSgrv~l~dG~~~rv~yag~NG~pY~sigr~Li~~G~i~~~~~sm~~ir~wl~~nP~ 240 (365)
T d2pnwa1 161 LRGRGLEIAWARSKVDLFFVHVQGAARLVFPDGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLADHPD 240 (365)
T ss_dssp TTTSSCEEEEESCHHHHHHHHHHTEEEEECTTSCEEEEEEEEECSCCCCCHHHHHHHTTCSCTTTCCHHHHHHHHHHCGG
T ss_pred CCCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHCHH
T ss_conf 46778623673685777886303617999089998999871678986505679998768878210799999999997969
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~ll~~N~syvFFr~~~~~~~~~Gp~Ga~gvpLtp~rSiAvD~~~~plG~p~~l~~~~~~~~~~~~~~~rl~~aqDTG 320 (365)
T d2pnwa1 241 EVDGVLWHNRSYIFFREADVAGLDMGPIAAAKVPLVAGRALAVDRLIHTFGLPFFIHAPTLTHLDDGKPFARLMLALDTG 320 (365)
T ss_dssp GHHHHHTTCCCCEEEEEC-------CCBCTTSSBCCTTTEEECCTTTCCTTCEEEEEETTCCTTTTTSCEEEEEEEEECC
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECC
T ss_conf 99999860997599887788776789756137120125035405542578865999656777689987100669997446
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------5
Q 000920 1082 --------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------~ 1082 (1223)
.
T Consensus 321 gAIkG~~R~D~f~G~G~~A~~~Ag~~~~~g~~~~Llpk~~~~r~~ 365 (365)
T d2pnwa1 321 SAIVGPARGDIFTGSGFEAGELAGTVRNEADFYILLPRIAAERYR 365 (365)
T ss_dssp TTCCSTTEEEEEEEESHHHHHHHHTCEEEEEEEEEEEHHHHGGGC
T ss_pred CCCCCCCCEEEEEECCHHHHHHHHCCCCCEEEEEEEECCHHHHCC
T ss_conf 523689726997408889998860768744799998734354439
|
| >d1um0a_ d.258.1.1 (A:) Chorismate synthase, AroC {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=0 Score=27484.08 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 Mns~G~~~r~tt~GESHG~~ig~vIdG~PaGl~i~~e~I~~~L~RR~pG~~~~~t~R~E~D~veilSGv~~G~TtG~PI~ 80 (365)
T d1um0a_ 1 MNTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFITPRKEDDKVEITSGVFEDFSTGTPIG 80 (365)
T ss_dssp CCEECSSSEEEECCSCCSSEEEEEEECCCBTCBCCHHHHHHHHHHHTTCCSSCCCHHHHSCEEEECSSEETTEECSSCEE
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECEECCEECCCCCE
T ss_conf 98764422788515578884489992408688858999999986679999998766899982799027368826577405
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~RgggRsSaReTa~rVaaGaiAk~lL~~~gI~v~~~v~~IG~i 160 (365)
T d1um0a_ 81 FLIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIRDFRGGGRSSARESAIRVAAGAFAKMLLREIGIVCESGIIEIGGI 160 (365)
T ss_dssp EEEECCCSCCCCCCCCTTBCCTTSTHHHHHHHHCCCCCCCTTCSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEETTE
T ss_pred EEECCCCCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf 55414656751456664257777761111100785367888618899999999999999988875471589999944544
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSvGG~ve~~~~gv~~~~g~P~GlG~P~f~kLda~LA~A~mSI 240 (365)
T d1um0a_ 161 KAKNYDFNHALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAKLDAKIAEAMMGL 240 (365)
T ss_dssp ECSSCCHHHHHHSTTCBSCHHHHHHHHHHHHHHHHTTCCBCEEEEEEEEESSTTCCCCSCCSBTTTBCHHHHHHHHHHTS
T ss_pred CCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 45431011202444036872667888999999985188768668999855643444786557876421236999877425
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 pAvKgVE~G~Gf~~a~~~GSe~nD~~~~~~~~tN~aGGi~GGiSnG~pI~~rva~KP~sSI~~pq~Tvd~~~~e~~~~~~ 320 (365)
T d1um0a_ 241 NGVKAVEIGKGVESSLLKGSEYNDLMDQKGFLSNRSGGVLGGMSNGEEIIVRVHFKPTPSIFQPQRTIDINGNECECLLK 320 (365)
T ss_dssp TTEEEEEETTGGGGGGSBHHHHCCCEETTEESCCTTTTEETTEECSSCEEEEEEECCCSCCSSCEEEEBTTSCEEEECCC
T ss_pred CCEEEEEECCCHHHHHCCHHHHCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEECCCCCCCCCCCCEECCCCEEEEEEC
T ss_conf 33235641454666652576506732478874567785105767887669999957875567755435779987776016
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------5
Q 000920 1082 --------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------~ 1082 (1223)
-
T Consensus 321 gRhDpCivprA~~V~EAm~alvlaD~~L~~~~~~~~~~k~~~~~~ 365 (365)
T d1um0a_ 321 GRHDPCIAIRGSVVCESLLALVLADMVLLNLTSKIEYLKTIYNEN 365 (365)
T ss_dssp SCCCSCTHHHHHHHHHHHHHHHHHHHHHHGGGSBHHHHHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 988970726528999999999999999997563599999874179
|
| >d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Pyruvate dehydrogenase E1-alpha, PdhA species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=0 Score=27485.58 Aligned_cols=1 Identities=100% Similarity=0.703 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~p~ls~e~l~~~yr~M~l~R~~e~~~~~l~~qG~ig~~h~~~GqEa 80 (365)
T d1w85a_ 1 TFQFPFAEQLEKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEA 80 (365)
T ss_dssp CCCCCHHHHHHHHHHTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHH
T ss_pred CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 98797433321022139769999999999885457999999999999999999999999999997799656008898699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~vg~~~~l~~~D~i~~~yR~hg~~la~G~~~~~~~~~~~G~~~g~~~~~~~~~~~~~~ivG~~~p~AvG~A~a~k~~~~ 160 (365)
T d1w85a_ 81 SQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIPEGVNVLPPQIIIGAQYIQAAGVALGLKMRGK 160 (365)
T ss_dssp HHHHHHHTCCTTCEEECCSSCHHHHHHTTCCHHHHHHHHHTCGGGGCCCTTCCBCCCCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCEEEECCCCHHEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99999986797687631366112255569999999986279988667888755605533357666412567765643046
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~~aist~~~~~~~~~~~~~r~~~~Gi~~~~vDG~D~~~v~~ 240 (365)
T d1w85a_ 161 KAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYA 240 (365)
T ss_dssp SCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHH
T ss_conf 88146631677643126888887764336674379997024333322202133211111012357617981440687999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~dd~~~~YR~~eEi~~w~~~DPI~~~~~~L~~~g~~~~~el~~i~~e~~~ 320 (365)
T d1w85a_ 241 AVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKE 320 (365)
T ss_dssp HHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHHTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999997423796179974134356667868863124774789998848989999999998799999999999999999
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------5
Q 000920 1082 --------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------~ 1082 (1223)
+
T Consensus 321 eV~~A~~~A~~sP~P~~~~l~~~Vy~e~p~~l~eq~~~~~~~~~~ 365 (365)
T d1w85a_ 321 EIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKEKESK 365 (365)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHTSCSSCCHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999999999868998989998453238998899999999887469
|
| >d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Cobalamin-independent methionine synthase domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=27481.26 Aligned_cols=1 Identities=0% Similarity=0.238 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~lpTT~VGS~PRp~eLk~a~e~~~~G~is~eel~~~~~~ai~~~v 80 (365)
T d1u1ha2 1 EGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKAKKVSEEDYVKAIKEEIKKVV 80 (365)
T ss_dssp THHHHHTTTTSSCCCSSSCCHHHHHHHHHHHSCCCSSCBBCCSBCCCCSCCC-------------CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 96899988089865267983789999999847999986232477889989999999976699999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~Q~~aGidiItDGE~~r~d~~~~f~~~l~G~~~~~~~~~~~~~~~~~~~p~~~g~i~~~~~~~~~~~~~~~~~~~~~~k 160 (365)
T d1u1ha2 81 DLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMK 160 (365)
T ss_dssp HHHHTTCCSBBCCBCTTCSCTTHHHHTTSTTEECCSSCCEEEETTEEECCCEECSCCCCCSCSSHHHHHHHTTSCSSCBE
T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCEEEECCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 99998479967639813035999999752670000464157469711066041475446676408999998850122234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~i~gp~~l~~~~~~~~y~~~~e~~~dLa~ay~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~n~~~ 240 (365)
T d1u1ha2 161 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPLRKSEHAFYLDWAVHSFRITN 240 (365)
T ss_dssp EEEECHHHHHHTSEECSSSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECTTTTTTCCSSGGGHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 45550368853126668899899999999999999999996699389957628764321242159999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~v~~~~~~g~~~~~~~~l~~l~vd~l~le~~~~~~~~l~~~~~~~p~~K~l~~GVVd~r~~~~E~~e~v~~ri 320 (365)
T d1u1ha2 241 CGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRV 320 (365)
T ss_dssp TTSCTTSEEEEEESCSCCTTTHHHHHTTCCSEEEECCSSSCGGGGGGTSSSSCCCSEEEECCSCTTSSSCCCHHHHHHHH
T ss_pred HCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 43566655899732655412478885477420001103586278887775288998899888827999879999999999
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------5
Q 000920 1082 --------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~a~~~v~~erl~lspdCGf~~l~~~~a~~KL~~lv~~a~~vr~e 365 (365)
T d1u1ha2 321 NKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQ 365 (365)
T ss_dssp HHHHTTSCTTTBCBCCSSCCTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999973885539981888999799899999999999999999659
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=100.00 E-value=0 Score=27482.71 Aligned_cols=1 Identities=0% Similarity=-0.426 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~k~~r~~l~fdDVllvP~~st~~s~~vdl~~~it~~~~~~iPIIsA~MDtV~~~~mA~~ls~~Gglgvlhr~~~~~ 80 (365)
T d1zfja1 1 SNWDTKFLKKGYTFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMSIT 80 (365)
T ss_dssp CGGGGSSCCCCCCGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHH
T ss_pred CCCCHHHHHCCCCCCEEEEECCCCCCCHHHCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCHH
T ss_conf 97211223026880108985787776776726237964895268988978988768889999999779916974866789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 e~~~~~~~~~~~~~~~~v~aavGv~~~~~er~~~l~~agvd~ivID~A~G~s~~~~~~i~~ik~~~~~~~iIaGNV~T~e 160 (365)
T d1zfja1 81 EQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAE 160 (365)
T ss_dssp HHHHHHHHHHHHTSCBCCEEEECSSTTHHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSHH
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCHH
T ss_conf 98877665443037569999944681277899999986998899978865543214788999865887644411343489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~ 240 (365)
T d1zfja1 161 GARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGS 240 (365)
T ss_dssp HHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCEEEECC
T ss_conf 99999866976378640256445676301342242138999999997579569805884762066655321587898642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~lAg~~EsPG~~~~~~g~~~k~~~Gm~s~~a~~~~~~~r~~~~~~~~~~~~~~eG~~~~v~~~G~~~~~~~~l~gglrs~ 320 (365)
T d1zfja1 241 MFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQMLGGIRSG 320 (365)
T ss_dssp TTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------CCCCCSBCEEEEECCBCHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCEEEECCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 21046678974797778475552775557555456644434455443221224684478546787789999999999998
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------5
Q 000920 1082 --------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------~ 1082 (1223)
.
T Consensus 321 m~y~G~~~l~e~~~~~~fv~vt~~~~~E~~~h~~~~~~~~~~y~~ 365 (365)
T d1zfja1 321 MGYVGAGDIQELHENAQFVEMSGAGLIESHPHDVQITNEAPNYSV 365 (365)
T ss_dssp HHHTTCSSHHHHHHHCCEEECCHHHHHHHSCCSSCCSSCBTTBC-
T ss_pred HHHCCCCCHHHHHHCCEEEEECCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 762487749999629889999922010258862577157899869
|
| >d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Fe-only hydrogenase superfamily: Fe-only hydrogenase family: Fe-only hydrogenase domain: Fe-only hydrogenase, catalytic domain species: Clostridium pasteurianum [TaxId: 1501]
Probab=100.00 E-value=0 Score=27479.86 Aligned_cols=1 Identities=100% Similarity=0.603 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~i~~v~~~l~~~~k~vV~siaP~~r~sla~~f~l~~~~~~~~kl~~~lk~LGF~~V~dt~~gad~~~~e~~~E~~~r~~~ 80 (365)
T d3c8ya1 1 HMDRVKNALNAPEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIFDINFGADMTIMEEATELVQRIEN 80 (365)
T ss_dssp CHHHHHHHHHCTTCEEEEEECGGGGGTGGGGGTCCSSCCCHHHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_conf 97899999968995899998927899999984899430028999999998699999983788899999999999999865
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~P~isS~CPg~V~yiEk~~PeLip~ls~v~SP~~~~g~liK~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~r~e~~~ 160 (365)
T d3c8ya1 81 NGPFPMFTSCCPGWVRQAENYYPELLNNLSSAKSPQQIFGTASKTYYPSISGLDPKNVFTVTVMPCTSKKFEADRPQMEK 160 (365)
T ss_dssp TCSCCEECCCCHHHHHHHHHHCGGGGGGBCCBCCHHHHHHHHHTTHHHHTTCCCGGGEEEEEEESCSHHHHHHTCTTSEE
T ss_pred CCCCCEEEECCHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCCCC
T ss_conf 89987598479899999999675653325678888999999999987876099911289999834643224542821245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~dVD~VLT~~El~~~l~~~~i~~~~l~~~~~~~~~~~~s~~g~~~~~sGG~~~~~~~~~~~~~~~~~~~~~~~~~~r 240 (365)
T d3c8ya1 161 DGLRDIDAVITTRELAKMIKDAKIPFAKLEDSEADPAMGEYSGAGAIFGATGGVMEAALRSAKDFAENAELEDIEYKQVR 240 (365)
T ss_dssp TTEESCSEEEEHHHHHHHHHHTTCCGGGCCCCCCCGGGTCCCHHHHTTTSTTHHHHHHHHHHHHHHHTCCCSCCCCGGGC
T ss_pred CCCCCCCEEEEHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECC
T ss_conf 78987488953999999999759992238886668766777866512123663999999998774368865552024306
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 g~~~i~~~~~~~~~~~~~~~~v~G~~n~~~~l~~~k~~~~~~~fvEvmACpgGCinGgGq~~~~~~~~~~~~~~~~r~~~ 320 (365)
T d3c8ya1 241 GLNGIKEAEVEINNNKYNVAVINGASNLFKFMKSGMINEKQYHFIEVMACHGGCVNGGGQPHVNPKDLEKVDIKKVRASV 320 (365)
T ss_dssp SSCSEEEEEEEETTEEEEEEEEESHHHHHHHHHTSGGGSSCCCEEEEESSTTSGGGCTTSCCCCHHHHHHSCHHHHHHHH
T ss_pred CCCCEEEEEEEECCCEEEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 87751899997089178999960299999999987459999728998068998707998688896013268999999998
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------5
Q 000920 1082 --------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------~ 1082 (1223)
+
T Consensus 321 l~~~d~~~~~r~~~en~~~~~ly~~~l~~p~~~~~~~lLHT~y~~ 365 (365)
T d3c8ya1 321 LYNQDEHLSKRKSHENTALVKMYQNYFGKPGEGRAHEILHFKYKK 365 (365)
T ss_dssp HHHHHHHCSCCSGGGCHHHHHHHHHTTCSTTSHHHHHHSBCCCCC
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCC
T ss_conf 875430377788855999999999986799838999972687029
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=100.00 E-value=0 Score=27479.66 Aligned_cols=1 Identities=0% Similarity=-1.324 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~L~~~i~~~i~~~G~i~f~~fM~~~LY~p~~GYY~~~~~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~ 80 (365)
T d1zkda1 1 IDQTALATEIKRLIKAAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQT 80 (365)
T ss_dssp CCSSHHHHHHHHHHHHHCSEEHHHHHHHHHHCTTTCTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 97207899999999956985599999997079986344789978899886788734799999999999999997177766
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~w~~~~~~~~~~~g~iiaNE~fDA 160 (365)
T d1zkda1 81 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWHDSFEDVPEGPAVILANEYFDV 160 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEESSGGGSCCSSEEEEEESSGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEECCCHHHCCCCCEEEEECCCCCC
T ss_conf 16995188611788866554123311355405898435456778898874166540111474243558759993255755
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 lPv~~~~~~~~~~~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~G~~l~i 240 (365)
T d1zkda1 161 LPIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLARLSPPGAVFEWRPDTEILKIASRVRDQGGAALII 240 (365)
T ss_dssp SCCEEEEEETTEEEEEEEEECTTSCEEEEECSSCCTTCGGGSCGGGGGCCTTCEEEECCSHHHHHHHHHHHHHCEEEEEE
T ss_pred CCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCHHHHHHHCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 00128997475421322232255204776310212467763033443147886323565899998765666405653433
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 DYG~~~~~~~~~l~~~~~h~~~d~l~~pG~~DIT~~VnFs~L~~~~~~~g~~~~~~~tQ~~FL~~~GI~~~~~~l~~~~~ 320 (365)
T d1zkda1 241 DYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFDALGRAAESIGARAHGPVTQGAFLKRLGIETRALSLMAKAT 320 (365)
T ss_dssp EEEESSCCBCCCCEEECSSSEECTTSSTTSSEEECCEEHHHHHHHHHHTTCEEEEEEEHHHHHHHTTHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCEECCCCHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 10045554444203344443366213898753265118899999987458615234358999997889999999975399
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------5
Q 000920 1082 --------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~~~~~~~~Li~p~~~~MGe~FKVl~~~~~~~~~~~gf~~~ 365 (365)
T d1zkda1 321 PQVSEDIAGALQRLTGEGRGAMGSMFKVIGVSDPKIETLVALSDD 365 (365)
T ss_dssp HHHHHHHHHHHHHHHCEETTEETTTEEEEEEECTTCCCCTTTTCC
T ss_pred HHHHHHHHHHHHHHCCCCCHHCCHHEEEEEEECCCCCCCCCCCCC
T ss_conf 889999999999726988100211279999817999988898999
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=100.00 E-value=0 Score=27474.76 Aligned_cols=1 Identities=0% Similarity=-0.360 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (365)
T d1jofa_ 1 PLHHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP 80 (365)
T ss_dssp CEEEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCEEEECCCCCEEEEEECCCEEEEEEECCCCEEEEEEEC
T ss_conf 91199999314999899999858889389845445168999777999489899999938947899990899769876412
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~ 160 (365)
T d1jofa_ 81 IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCEEE
T ss_conf 89986789987899879999932799789986745788742068664033004764675568898115978889999899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~ 240 (365)
T d1jofa_ 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred EEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCC
T ss_conf 82079987999970688716652511112788740899988998669995158998999995598753778731240245
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~ 320 (365)
T d1jofa_ 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCC
T ss_conf 56556665444435776316998999978997135787542279999856887144676766777679986478964899
Q ss_pred --------------------------------------------C
Q ss_conf --------------------------------------------5
Q 000920 1082 --------------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------------~ 1082 (1223)
-
T Consensus 321 G~~l~va~~~s~~v~v~~~~~~~l~~~~~~~vp~p~~~~~~~w~~ 365 (365)
T d1jofa_ 321 DEWMAITDDQEGWLEIYRWKDEFLHRVARVRIPEPGFGMNAIWYD 365 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEETTEEEEEEEEECCSTTEEEEEEEEC
T ss_pred CCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECC
T ss_conf 999999967999499999828867278999889999976879639
|
| >d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Porphyromonas-type peptidylarginine deiminase domain: Agmatine iminohydrolase species: Enterococcus faecalis [TaxId: 1351]
Probab=100.00 E-value=0 Score=27405.53 Aligned_cols=1 Identities=0% Similarity=1.068 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~tP~~~g~rmPaEwep~~~~~l~wP~~~~~w~~~~~~~~~~~~~i~~~ia~~e~V~v~~~~~~~~~~~~~~~~~ 80 (364)
T d2jera1 1 AKRIVGSTPKQDGFRMPGEFEPQEKVWMIWPERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVVVSQQQFQNCRRQLPPE 80 (364)
T ss_dssp CCBCCSCCHHHHTCBCCCTTSCEEEEEEECCCCTTTSGGGGHHHHHHHHHHHHHHHTTSCEEEEECTTTHHHHHHHSCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCC
T ss_conf 98456899111387748995500328997689985204677999999999999985887399997928999999757566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 v~~~~~~~dD~W~RD~GPi~v~~~~g~~~~vdf~FN~wG~k~~~~~~~~~~D~~~~~~ia~~~~~~~~~~~~lvlEGG~i 160 (364)
T d2jera1 81 ITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSF 160 (364)
T ss_dssp SEEEECCCSSSCHHHHSCEEEECTTSCEEEEEEECCTTTHHHHCSSSCCTTGGGHHHHHHHHHTCCEEEEEEEECCGGGE
T ss_pred EEEEECCCCCHHHHCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCCCE
T ss_conf 49999368875764551389991677567633664687655555555410278999999998366544665737748966
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~dG~GtlltTe~~ll~~nRNp~ls~~~ie~~Lk~~LGv~~viwl~~gl~~DdTdGHID~~arFi~~~~il~~~~~d~~~ 240 (364)
T d2jera1 161 HVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNS 240 (364)
T ss_dssp EECSSSEEEEEHHHHTSTTTCTTSCHHHHHHHHHHHHTCSEEEEECCCSCTTTTSSCGGGTEEEEETTEEEEECCCCTTS
T ss_pred EECCCCEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCC
T ss_conf 97799639975455514578999899999999999869863677658755677777754448994799569984388878
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~L~~~~da~G~~~~i~~lp~P~~~~~~~~~~~~~~~~~~~~~~~g~~l~aSY~Nfli~N~~VivP~fg~ 320 (364)
T d2jera1 241 PFYEAAQDAYQRLLKMTDAKGRQLKVHKLCCPVKNVTIKGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGD 320 (364)
T ss_dssp TTHHHHHHHHHHHHTCBCTTCCBCEEEEECCCSSCEECCTTSCCCCCTTSCCCCTTCEECCCTTCCEEETTEEEEEECSC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEECCCC
T ss_conf 35799999999997656534898558862689742333333344534575435689886202578999999999902798
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------5
Q 000920 1082 -------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~D~~Al~~l~~~fP~r~Vv~I~~~~i~~~gG~iHCiT~q~P~~ 364 (364)
T d2jera1 321 ENDRLALEQVQTMFPDKKIVGVNTVEVVYGGGNIHXITQQEPKR 364 (364)
T ss_dssp TTHHHHHHHHHHHSTTSEEEEEECHHHHTTTCCTGGGCEEEECC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCCHHHHCCCCC
T ss_conf 77899999999888899799971089875698014463127999
|
| >d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Arginase/deacetylase superfamily: Arginase/deacetylase family: Histone deacetylase, HDAC domain: Histone deacetylase 8, HDAC8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27404.53 Aligned_cols=1 Identities=0% Similarity=-2.021 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~pvyiy~~~~~~~~~~hP~~P~R~~~~~~ll~~~gl~~~~~~v~p~~At~~el~~vHs~~Yi~~l~~~~~~~~~~~~~~ 80 (364)
T d1t64a_ 1 LVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDS 80 (364)
T ss_dssp CCCEEECCHHHHHHHTCSSSSCCHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHCSSCCTTT
T ss_pred CCCEEEECHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCHH
T ss_conf 98869969888416799898829999999999974996688896889799899998299999999998604026444112
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~l~~d~p~~~~~~~~~~~~aG~~l~A~~~~~~g~~~~a~~~~gg~HHA~~~~a~GFC~~NdvaiA~~~~~~~~~RV~ 160 (364)
T d1t64a_ 81 IEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERIL 160 (364)
T ss_dssp TTTTCBTTBCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTCSCEE
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEE
T ss_conf 01067888887703999999985028999999875986500345754464333444454555689999999985103079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 iiD~DvHhGnGtq~iF~~d~~V~~~SiH~~~~~~~Pgtg~~~e~G~g~g~~~~~NvPL~~g~~d~~y~~~~~~~i~~~~~ 240 (364)
T d1t64a_ 161 YVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQ 240 (364)
T ss_dssp EEECSSSCCHHHHHHHTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98523577776044420687544533345567778898873105876445632334125565738999999976678862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~f~Pd~IvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~p~~~~~~GGY~~~~~ar~w~~~~~~l~g~~~~~~~P~ 320 (364)
T d1t64a_ 241 AFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPD 320 (364)
T ss_dssp HHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCCSBCCC
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 57998899989714778997778727998999999999835998799979888878999999999999859988866898
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------5
Q 000920 1082 -------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~p~~~~~~~~~~~~~~n~~~~~~~i~~~i~~~l~~~~ 364 (364)
T d1t64a_ 321 HEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVV 364 (364)
T ss_dssp CTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 50155409973136686656566999999999999999987429
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=100.00 E-value=0 Score=27402.89 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~pLFsP~~ig~~~LkNRiv~apm~~~~a~~g~p~~~~~~~y~~rA~gGgliite~~~V~~~g~~~~~~~~l~~d~~ 80 (364)
T d1icpa_ 1 QVDKIPLMSPCKMGKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISETGIGYKDVPGIWTKEQ 80 (364)
T ss_dssp CCCCCGGGSCEEETTEEESCSEEECCCCCCCCGGGSCCHHHHHHHHHTCCTTCEEECCCEECSGGGCCSTTCCBCSSHHH
T ss_pred CCCCCCCCCCCEECCEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCEEECCCCCCCCCCCEECHHHH
T ss_conf 99898899972489999678427524489858999797999999999983964999710788873357999853134344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 i~~~k~l~~~ih~~g~~~~~QL~H~Gr~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f 160 (364)
T d1icpa_ 81 VEAWKPIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEF 160 (364)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 45677888886237882577640477554554445788875323456531112346565678887311066799999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~aA~rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~ 240 (364)
T d1icpa_ 161 RVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEA 240 (364)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTC
T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHCEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
T ss_conf 99999999839986898305762131200110077675444204320167898765420124886466886043224677
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~vi~~g~~~~~~ae~~l~~g~aD~V~~ 320 (364)
T d1icpa_ 241 GDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAY 320 (364)
T ss_dssp CCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCSCEEEESSCCHHHHHHHHHTTSCSEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCEEHH
T ss_conf 67516777889987752032245665158655455455447889999986478789978989999999998699765056
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------5
Q 000920 1082 -------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------~ 1082 (1223)
-
T Consensus 321 gR~~iadPd~~~k~~~g~pi~~~~~~~~~~~~~~~g~~~~p~~~ 364 (364)
T d1icpa_ 321 GRLFISNPDLPKRFELNAPLNKYNRDTFYTSDPIVGYTDYPFLE 364 (364)
T ss_dssp SHHHHHCTTHHHHHHHTCCCCCCCGGGSSCCCSSTTTTCSCCCC
T ss_pred HHHHHHCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 79999790499999709998988611342799998848798889
|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=0 Score=27402.45 Aligned_cols=1 Identities=0% Similarity=0.039 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~v~~lv~~~l~G~n~~i~a 80 (364)
T d1sdma_ 1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFA 80 (364)
T ss_dssp CCEEEEEECCCCHHHHHTTCCBCEEECSTTEEEEECSSSSEEEEECSEEECTTCCHHHHHHTTTHHHHHHHTTCEEEEEE
T ss_pred CEEEEEECCCCCHHHCCCCCCCEEEECCCCEEEECCCCCCCEEEECCEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 96999992789936622589875996799758735789985477788564999998999998999999996698503552
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 YGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~~~~~~ 160 (364)
T d1sdma_ 81 YGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMV 160 (364)
T ss_dssp ECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEECTTSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 23478776201656766551367899998865531034655369999888723632233576545554433133146760
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~~~~~~~kl~~vDLAGsEr~~~~~~ 240 (364)
T d1sdma_ 161 SVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGS 240 (364)
T ss_dssp EEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCSCCCC---
T ss_pred CCCCCEEEEECCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEECHHHCCCCCCCCC
T ss_conf 20353000117788978986406600044534354103336359999999703676503567998404100352001466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~g~~~~E~~~iN~SL~~L~~vi~aL~~~~~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa~~ak 320 (364)
T d1sdma_ 241 AGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVR 320 (364)
T ss_dssp ------CCCTTCHHHHHHHHHHHHHHHTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 67502332335643206899999997499757730112138878634999509999996987001899999999999984
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------5
Q 000920 1082 -------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------~ 1082 (1223)
-
T Consensus 321 ~i~n~p~~n~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~l~~e 364 (364)
T d1sdma_ 321 SIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364 (364)
T ss_dssp TCCCCCCCCEECHHHHHHHTTTTCC-----------CCEECCCC
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC
T ss_conf 20667835579899999999999999998744027799997559
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=0 Score=27401.84 Aligned_cols=1 Identities=0% Similarity=-1.590 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~tP~ei~~~L~~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvG 80 (364)
T d1um8a_ 1 LLSYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSG 80 (364)
T ss_dssp CCSCCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSS
T ss_pred CCCCCCCHHHHHHHHCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf 97779887999999589623808999999999998998887788764044443311112233456787532441899863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 KTElAk~LA~~~~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~ 160 (364)
T d1um8a_ 81 KTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSG 160 (364)
T ss_dssp HHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------C
T ss_pred HHHHHHHHHHHCCCCEEEHHHHHCCCCHHHHHHHCCCHHHHHHHCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 78999999864435331112220144316676312103445420245899865463010166653134544555512214
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (364)
T d1um8a_ 161 EGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILH 240 (364)
T ss_dssp HHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGG
T ss_pred HHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf 38898645540586122587778767764168996113455411131014566543014454310001100124666530
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~~~la~~g~d~~~G 320 (364)
T d1um8a_ 241 LVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTG 320 (364)
T ss_dssp GCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCC
T ss_conf 24578776530079999872301557402099999999879999999999998757927999899999999956587778
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------5
Q 000920 1082 -------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------~ 1082 (1223)
.
T Consensus 321 AR~L~riie~~l~~~~f~~p~~~~~~v~I~~~~V~~~~~~~~i~ 364 (364)
T d1um8a_ 321 ARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLIIA 364 (364)
T ss_dssp GGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCCEEEC
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHCCCCCCEEEC
T ss_conf 36789999999999855587789999997778867998881439
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=0 Score=27400.93 Aligned_cols=1 Identities=0% Similarity=-1.257 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 lslddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~ 80 (364)
T d1omwa3 1 LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD 80 (364)
T ss_dssp CCSTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS
T ss_pred CCHHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECC
T ss_conf 97776851018842889099999999999799999984587542667999999999999985089985889999999899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~ 160 (364)
T d1omwa3 81 KLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK 160 (364)
T ss_dssp EEEEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSS
T ss_pred EEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEECCCCCEEEEEECEEEECCCC
T ss_conf 88999991489838999873255327899999999999999999779622044422167858896798220102333788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li 240 (364)
T d1omwa3 161 KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLL 240 (364)
T ss_dssp CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCCCCCCSSSCHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 64331134554216876038999844104677899999985999888899899999998604688878877899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~i~~~~~~~~~~~~p~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 320 (364)
T d1omwa3 241 EGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLLDSDQEL 320 (364)
T ss_dssp HHHTCSSTTTSTTTSSSTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC--------------------CCCCSSSSGG
T ss_pred HHHCCCCHHHHCCCCCCCHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHH
T ss_conf 99856698880887435799997491023789879962889959379988888687454665881011379889757899
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------5
Q 000920 1082 -------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~q~~~ 364 (364)
T d1omwa3 321 YRNFPLTISERWQQEVAETVFDTINAETDRLEARKKTKNKQLGH 364 (364)
T ss_dssp GTTCCEECHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC
T ss_conf 84687657637788888876644526578888642271633389
|
| >d1kbla1 c.1.12.2 (A:510-873) Pyruvate phosphate dikinase, C-terminal domain {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate phosphate dikinase, C-terminal domain domain: Pyruvate phosphate dikinase, C-terminal domain species: Clostridium symbiosum [TaxId: 1512]
Probab=100.00 E-value=0 Score=27400.85 Aligned_cols=1 Identities=0% Similarity=-1.224 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~waD~~r~~~v~aN~~~~~d~~~A~~~GAdGIGL~RTEflfl~~~~~p~~~~~~~~~~~e~~~~ 80 (364)
T d1kbla1 1 IETQEASVSGSFERIMVWADKFRTLKVRTNADTPEDTLNAVKLGAEGIGLCRTEHMFFEADRIMKIRKMILSDSVEAREE 80 (364)
T ss_dssp CCEECCCCCHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHTTCCSEEEECCTHHHHSHHHHHHHHHHHHCCSHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHH
T ss_conf 99768887448999999877467107998289999999999769971548888998727876540566663367266799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~q~~~y~~i~~~~~g~pvtiRtlD~g~dk~~p~~~~~~~~~~~~lg~~~~~~~~~~~~~~E~NP~LG~RGiR~ 160 (364)
T d1kbla1 81 ALNELIPFQKGDFKAMYKALEGRPMTVRYLDPPLHEFVPHTEEEQAELAKNMGLTLAEVKAKVDELHEFNPMMGHRGCRL 160 (364)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTCCEEEECCCSCGGGGSCCSHHHHHHHHHHHTCCHHHHHHHHHHHCCSCGGGSSCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99998887877899999860898679851568864467873156899998739987887665424455784224433213
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~l~~p~lf~~QlrAilrA~~~~~~~~g~~~~~~Im~Pmv~~~~E~~~~k~~i~~~~~~l~~~~~~~~~~~iG~MiE~Psa 240 (364)
T d1kbla1 161 AVTYPEIAKMQTRAVMEAAIEVKEETGIDIVPEIMIPLVGEKKELKFVKDVVVEVAEQVKKEKGSDMQYHIGTMIEIPRA 240 (364)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEECSHHH
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHH
T ss_conf 42665236888999999999978843875431441131304999999998888899997530387766148775011599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 al~~d~~~~~vDF~SIGTNDLtQy~la~dRd~~~~~l~~y~~~~i~~~dP~~~~~~~av~~lI~~~~~~~~~~~~~i~vs 320 (364)
T d1kbla1 241 ALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKFLDSYYKAKIYESDPFARLDQTGVGQLVEMAVKKGRQTRPGLKCG 320 (364)
T ss_dssp HHTHHHHTTTCSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHTTSCSSCTTTSCCTTTHHHHHHHHHHHHHHHCTTCEEE
T ss_pred HHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 97189987327679963306878887433253255665554420022375104406999999999999999737998699
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------5
Q 000920 1082 -------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------~ 1082 (1223)
-
T Consensus 321 iCGE~asdp~~~~~L~~lGi~~lS~sp~~vp~~r~a~aqa~~~~ 364 (364)
T d1kbla1 321 ICGEHGGDPSSVEFCHKVGLNYVSCSPFRVPIARLAAAQAALNN 364 (364)
T ss_dssp ECSGGGGSHHHHHHHHHTTCSEEEECGGGHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 71731159999999998699989978046699999999987439
|
| >d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Glycerol dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=27400.71 Aligned_cols=1 Identities=0% Similarity=-1.158 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~m~~~~~~P~rii~G~gal~~l~~~l~~~g~r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~v~~~~~~~~~i~~~~~~~ 80 (364)
T d1kq3a_ 1 HMITTTIFPGRYVQGAGAINILEEELSRFGERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLV 80 (364)
T ss_dssp CCCBCCCCCSEEEEETTGGGGHHHHHHTTCSEEEEEECHHHHHHTTCTTGGGGCSSSEEEEEECCSSCBHHHHHHHHTTC
T ss_pred CCCCCEECCCCEEEECCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 99755778978798059999999999973993899989865564799999998886698699618989807999999975
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~D~IIavGGGs~~D~aK~ia~~~~~P~I~IPTTa~tgse~t~~avi~~~~~~~k~~~~~~~~P~~viiDp~l~~t~P 160 (364)
T d1kq3a_ 81 EEETDVVVGIGGGKTLDTAKAVAYKLKKPVVIVPTIASTDAPCSALSVIYTPNGEFKRYLFLPRNPDVVLVDTEIVAKAP 160 (364)
T ss_dssp CTTCCEEEEEESHHHHHHHHHHHHHTTCCEEEEESSCCCSCTTSSEEEEECTTSCEEEEEECSSCCSEEEEEHHHHHHSC
T ss_pred HCCCCEEEEECCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCEEEECCHHHHHHH
T ss_conf 20576899813675410101223334210124225433332446513786326775311200244533887716666435
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~Dal~h~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 240 (364)
T d1kq3a_ 161 ARFLVAGMGDALATWFEAESCKQKYAPNMTGRLGSMTAYALARLCYETLLEYGVLAKRSVEEKSVTPALEKIVEANTLLS 240 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCBCTTSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88886217888653777765554214001015555568999999999999988887777640337999999999877875
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 g~~~~~~~~~~~H~~~~~~~~~~~~~~~~HG~~va~~~~~~~~~~~~~~~~~~~i~~l~~~lglP~~L~elGi~~~~~~~ 320 (364)
T d1kq3a_ 241 GLGFESGGLAAAHAIHNGLTVLENTHKYLHGEKVAIGVLASLFLTDKPRKMIEEVYSFCEEVGLPTTLAEIGLDGVSDED 320 (364)
T ss_dssp HHHHHHHCCCHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTCCCSGGGGTCTTCCHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHH
T ss_conf 34213445566520002254523764202107899889999875406799999999999985999989992999998999
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------5
Q 000920 1082 -------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------~ 1082 (1223)
.
T Consensus 321 l~~ia~~a~~~~~~~~~~P~~~t~edi~~il~~A~~~~~~~~~~ 364 (364)
T d1kq3a_ 321 LMKVAEKACDKNETIHNEPQPVTSKDVFFALKAADRYGRMRKNL 364 (364)
T ss_dssp HHHHHHHHTCTTSGGGGSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999998727775658996899999999999999998875579
|
| >d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Xylanase 10c species: Cellvibrio japonicus [TaxId: 155077]
Probab=100.00 E-value=0 Score=27399.24 Aligned_cols=1 Identities=0% Similarity=0.371 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~l~~~~~~~f~~G~av~~~~~~~~~~~~~~~~~~~~~~~fn~~t~eN~mKW~~iep~~G~~nf~~~D~~v~~a 80 (364)
T d1us3a2 1 AYSANVDHLRDLAPSDFPIGVAVSNTDSATYNLLTNSREQAVVKKHFNHLTAGNIMKMSYMQPTEGNFNFTNADAFVDWA 80 (364)
T ss_dssp CCCCCCSCGGGGCSSSCCEEEEEBCTTCTTTBTTTCHHHHHHHHHHCSEEEESSTTSHHHHCSBTTBCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCCCHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 97564358999703689478885276555422246778999999768823165467768855889836838999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~gi~v~GH~lvW~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~vv~ry~~~G~I~~WDVvNEp~~~~~~~~~~~~~~~~ 160 (364)
T d1us3a2 81 TENNMTVHGHALVWHSDYQVPNFMKNWAGSAEDFLAALDTHITTIVDHYEAKGNLVSWDVVNEAIDDNSPANFRTTDSAF 160 (364)
T ss_dssp HHTTCEEEEEEEEECCGGGSCHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCBCSSSSCCBCCTTCHH
T ss_pred HHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCHH
T ss_conf 98889899950687865578643235786579999999999999987524688357999860444578876556666437
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~g~~~~~i~~Af~~Ar~~~p~a~l~~ndy~~~~~~~~~~~~~~~v~~l~~~g~~idgiG~Q~H~~~~~p~~~~i~~~ 240 (364)
T d1us3a2 161 YVKSGNSSVYIERAFQTARAADPAVILYYNDYNIEQNNAKTTKMVDMVKDFQARSIPIDGVGFQMHVCMNYPSIANISAA 240 (364)
T ss_dssp HHHTTSCSHHHHHHHHHHHHHCTTSEEEEEESSTTSCSHHHHHHHHHHHHHHHTTCCCCEEEECCEEESSCSCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 77708833999999999998640343211565334663134678999999986899655532410025799998999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 l~~~~~~g~~I~iTEldi~~~~~~~~~~~~~~~~~~~~~~~~~QA~~~~~~~~~~~~~~~~~~~~~vt~Wg~~D~~sW~~ 320 (364)
T d1us3a2 241 MKKVVDLGLLVKITELDVAVNQPHCDAYPANKINPLTEAAQLAQKKRYCDVVKAYLDTVPVNQRGGISVWGTTDANTWLD 320 (364)
T ss_dssp HHHHHTTTCEEEEEEEEEESSCTTSTTTTTTCCCSCCHHHHHHHHHHHHHHHHHHHHHSCGGGEEEEEESCSBGGGCHHH
T ss_pred HHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 99998549905887404741467665444444688875899999999999999998455623455699815874876556
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------5
Q 000920 1082 -------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~~~lL~d~d~~pKPAy~av~~~L~g~~~~~~~ 364 (364)
T d1us3a2 321 GLYREQFEDEKISWPLLFDNNYNDKPALRGFADALIGTQCTNTH 364 (364)
T ss_dssp HHTTTTTTTCCCCCCSSBCTTSCBCHHHHHHHHHHHTCCCCSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 87777666666687866889989988999999997799887889
|
| >d1oc7a_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Humicola insolens, Cel6a [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycosyl hydrolases family 6, cellulases family: Glycosyl hydrolases family 6, cellulases domain: Cellobiohydrolase II (Cel6) species: Humicola insolens, Cel6a [TaxId: 34413]
Probab=100.00 E-value=0 Score=27398.82 Aligned_cols=1 Identities=0% Similarity=-0.925 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
+
T Consensus 1 ~p~~gNPf~g~~~yvnP~~~~~v~~~a~~~~~d~~~~a~~~~va~~Pta~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 80 (364)
T d1oc7a_ 1 APYNGNPFEGVQLWANNYYRSEVHTLAIPQITDPALRAAASAVAEVPSFQWLDRNVTVDTLLVQTLSEIREANQAGANPQ 80 (364)
T ss_dssp CCCCSCTTTTCEECCCHHHHHHHHHTTGGGCCCHHHHHHHHHHTTSCCCEEECSGGGTTTHHHHHHHHHHHHHHTTCSSC
T ss_pred CCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99789988898332474077899999873468988999999985378279711477777522778999999987214788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~lVvY~iP~RDC~a~as~Ge~~~~~~g~~~y~~Yid~I~~~~~~~~~~~~vvIlEPDsL~nlvt~~~~~~c~~~~~~ 160 (364)
T d1oc7a_ 81 YAAQIVVYDLPDRDCAAAASNGEWAIANNGVNNYKAYINRIREILISFSDVRTILVIEPDSLANMVTNMNVPKCSGAAST 160 (364)
T ss_dssp EEEEEEECCCTTCSTTSSSCCCCCCGGGTHHHHHHHHHHHHHHHHHHTTTSCEEEEECTTSTHHHHHCTTSHHHHHHHHH
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHH
T ss_conf 51389994799987320004897545766468899999999999975688634999777622223306880666778999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~i~yAi~~l~~pnv~vYlDaGhsgWLgw~~n~~~~a~~~a~~l~~ag~~~~vrGFatNvsNy~~~~~~~~~~~~~~n 240 (364)
T d1oc7a_ 161 YRELTIYALKQLDLPHVAMYMDAGHAGWLGWPANIQPAAELFAKIYEDAGKPRAVRGLATNVANYNAWSVSSPPPYTSPN 240 (364)
T ss_dssp HHHHHHHHHHHTCCTTEEEEEECCCTTTTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESTTCCCCSSCSSCCGGGTTC
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 99999999997169973899978877666760001268999999998647864343378704477666667887544578
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~dE~~y~~~l~~~l~~~G~~~~fvIDTsRNG~gp~~~~~~g~WCN~~GaglG~rPt~~t~~~~vDA~lWIKpPGESDG 320 (364)
T d1oc7a_ 241 PNYDEKHYIEAFRPLLEARGFPAQFIVDQGRSGKQPTGQKEWGHWCNAIGTGFGMRPTANTGHQYVDAFVWVKPGGECNG 320 (364)
T ss_dssp SCCSHHHHHHHHHHHHHHTTCCCEEEEECTTCSSSSCSCSSTTCCSSBSSCCCCSCCBSCCCCTTEEEEECCSCTTBCSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf 76259999999999997458887448870467889877778888779999826889978999877677887588847788
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------5
Q 000920 1082 -------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~D~~C~~~~a~~~aP~AG~Wf~~~f~~Lv~NA~P~f 364 (364)
T d1oc7a_ 321 TSDTTAARYDYHCGLEDALKPAPEAGQWFNEYFIQLLRNANPPF 364 (364)
T ss_dssp CCCTTSTTCCGGGGSTTBCSSCCSTTSBCHHHHHHHHHTCSSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 88876666676667655789998677752999999997268999
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=27396.71 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~n~~~~~~~~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~ 80 (364)
T d2e7ja1 1 DFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMH 80 (364)
T ss_dssp CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf 97566841027968999999999984477510034666411135708999999999998695979997969999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~ 160 (364)
T d2e7ja1 81 SLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVK 160 (364)
T ss_dssp HHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHH
T ss_pred HHHCCCCEEEEECCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEECCH
T ss_conf 98679967974046431110688851211798630356433257999976655410467716999605779984552311
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (364)
T d2e7ja1 161 KIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGC 240 (364)
T ss_dssp HHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTC
T ss_pred HHEECCCCCCCHHHCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 00000023321111144323444320133332213530331012788888999988799999985156657663333310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (364)
T d2e7ja1 241 TARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRE 320 (364)
T ss_dssp CCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHH
T ss_conf 03235799999999988999999987777788999999975986457888876559983541477789753256677988
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------5
Q 000920 1082 -------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------~ 1082 (1223)
.
T Consensus 321 l~~~~~~~~~~g~~~~~~~~~~~~t~edid~~~~~l~ei~~~ys 364 (364)
T d2e7ja1 321 LKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKYS 364 (364)
T ss_dssp HHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHCCCCEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 87658713457876269980567999999999999999999759
|
| >d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Vibrio cholerae sialidase species: Vibrio cholerae [TaxId: 666]
Probab=100.00 E-value=0 Score=27401.18 Aligned_cols=1 Identities=0% Similarity=-1.057 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~ripsl~~~~~~~g~~~a~~~~r~~~~~~~~~~~~~di~~~RS~DgGkTWs~~~~i~~~~~~~~~~~~~~p~~~ 80 (364)
T d1w0pa3 1 VIFRGPDRIPSIVASSVTPGVVTAFAEKRVGGGDPGALSNTNDIITRTSRDGGITWDTELNLTEQINVSDEFDFSDPRPI 80 (364)
T ss_dssp EEECTTCEEEEEEECSSSTTCEEEEEEEEETCSSTTCTTCEEEEEEEEESSSSSSCCCCEESSGGGCTTSCEEEEEEEEE
T ss_pred CCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCEEE
T ss_conf 93468973547989807899899999623378998655896459999937897589998883158877786534577699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~d~g~tw~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 160 (364)
T d1w0pa3 81 YDPSSNTVLVSYARWPTDAAQNGDRIKPWMPNGIFYSVYDVASGNWQAPIVNPGPGHGITLTRQQNISGSQNGRLIYPAI 160 (364)
T ss_dssp EETTTTEEEEEEEEEETTCCSGGGCCCTTSCCEEEEEEEETTTTEECCCEEECCSSCCEECCCCTTSTTCCTTCEEEEEE
T ss_pred EECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEE
T ss_conf 97999969999975178877566455355448579986579998512352146420003505797120351992999788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~s~d~g~tw~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~l~~~~R~~~~~~~~~~~~~~~~~~ 240 (364)
T d1w0pa3 161 VLDRFFLNVMSIYSDDGGSNWQTGSTLPIPFRWKSSSILETLEPSEADMVELQNGDLLLTARLDFNQIVNGVNYSPRQQF 240 (364)
T ss_dssp EESSSCEEEEEEEESSSSSSCEECCCCCCCEEESSSSCEEECEEEEEEEEECTTSCEEEEEEEESCCEETTEECCSEEEE
T ss_pred EECCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 50578885037885168857886455676665334544345788722699965865678998157865577688975999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~gR~~~~l~~S~D~G~TW~~~~~l 320 (364)
T d1w0pa3 241 LSKDGGITWSLLEANNANVFSNISTGTVDASITRFEQSDGSHFLLFTNPQGNPAGTNGRQNLGLWFSFDEGVTWKGPIQL 320 (364)
T ss_dssp EESSSSSSCEEEEEEEGGGSTTCCSSCCCCEEEEEECTTSCEEEEEEEECTTTTTSSSSBSEEEEEESSTTSCCEEEEEC
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEE
T ss_conf 97589842235546753335776788632014776057896389996787876577860125999984799679997497
Q ss_pred -------------------------------------------C
Q ss_conf -------------------------------------------5
Q 000920 1082 -------------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~g~~~Ys~~~~~~~g~~~~~ye~~~~~i~~~~~~~~~l~~~~~ 364 (364)
T d1w0pa3 321 VNGASAYSDIYQLDSENAIVIVETDNSNMRILRMPITLLKQKLT 364 (364)
T ss_dssp CSSBCCSEEEEECSSSEEEEEEECGGGCEEEEEEEHHHHGGGTC
T ss_pred CCCCCCCCCEEECCCCEEEEEEECCCCCEEEEEEEHHHHHCCCC
T ss_conf 28997787327928998999999499838999987999521059
|
| >d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Nitric oxide (NO) synthase oxygenase domain superfamily: Nitric oxide (NO) synthase oxygenase domain family: Nitric oxide (NO) synthase oxygenase domain domain: Nitric oxide (NO) synthase oxygenase domain species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=27335.28 Aligned_cols=1 Identities=100% Similarity=2.597 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 ~s~~e~l~~eA~~Fi~~~y~e~~~~~~~~~Rl~ev~~eI~~tGtY~~T~eEL~~GAk~AWRNs~RCIGRl~W~~L~V~D~ 80 (363)
T d1m7va_ 1 GSHMEILWNEAKAFIAECYQELGKEEEVKDRLDSIKSEIDRTGSYVHTKEELEHGAKMAWRNSNRCIGRLFWNSLNVIDR 80 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTCTTCSCGGGGGGCEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEC
T ss_conf 97678999999999999998648632489999999999974177438999998878998714552323002275725656
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 R~v~t~~~m~eal~~Hl~~AtN~G~Ir~~ITVF~p~~~~~~~~RIwN~QLirYAGY~~dg~iiGDP~~vefT~~c~~lGW 160 (363)
T d1m7va_ 81 RDVRTKEDVRDALFHHIETATNNGKIRPSITIFPPEEKGEKQVEIWNHQLIRYAGYESDGERIGDPASRSLTAACEQLGW 160 (363)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHGGGSCCCEEEECCCCSSSCCSEEECCSBSSCBCEEC--CCCEECGGGHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 68999899999999999997079987623898078778999865644888866175889983689526899999997599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~t~FDvLPlviq~~g~~~P~~feiP~~lvlEV~i~HP~~~~f~~LgLkWyavP~iS~M~L~iGGi~y~aaPFNGWYM 240 (363)
T d1m7va_ 161 RGERTDFDLLPLIFRMRGDEQPVWYELPRSLVIEVPITHPDIEAFSDLELKWYGVPIISDMKLEVGGIHYNAAPFNGWYM 240 (363)
T ss_dssp CCCCCTTCBCCEEEEETTCSSCEEECCCTTTCCEEECCCSSCGGGGGGCCEEESCCEECSCEEEETTEEESCCCEECCEE
T ss_pred CCCCCCCCEEEEEEEECCCCCCEEECCCHHHEEEECCCCCCCHHHHHCCCCEEECHHHCCCHHHCCCEEECCCCCCCCEE
T ss_conf 99899888403899967999981331887783675157989755776698632032332240310888542456343422
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~TEIgaRnl~D~~RYn~L~~VA~~mGlDt~~~~sLWkDrAlvElN~AVLhSF~~~gVtivDHHtas~~F~~f~~~E~~~~ 320 (363)
T d1m7va_ 241 GTEIGARNLADEKRYDKLKKVASVIGISTNYNTDLWKDQALVELNKAVLYSYKKQGVSIVDHHTAASQFKRFEEQEEEAG 320 (363)
T ss_dssp HHHHHTTTTTCTTTTCCHHHHHHHTTCCCSCGGGTHHHHHHHHHHHHHHHHHHHHTCCEECHHHHHHHHHHHHHHHHHTT
T ss_pred EHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHC
T ss_conf 00230244555777774799999948888997215778899999999999999879647052788999999999999818
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------5
Q 000920 1082 ------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------~ 1082 (1223)
+
T Consensus 321 r~~~gdW~WlvPP~S~s~tpvfH~~~~~~~~~Pnf~yq~~pw~ 363 (363)
T d1m7va_ 321 RKLTGDWTWLIPPISPAATHIFHRSYDNSIVKPNYFYQDKPYE 363 (363)
T ss_dssp CCCBCCHHHHSCSSSGGGSGGGGSCCBCCCCSSEEECCCCTTC
T ss_pred CCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9999984377788864344277776544445887502788899
|
| >d1zaia1 c.1.10.1 (A:1-363) Fructose-1,6-bisphosphate aldolase {Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]
Probab=100.00 E-value=0 Score=27332.17 Aligned_cols=1 Identities=0% Similarity=-1.224 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~e~~~eL~~~a~~~~~~GKGilAADeS~gT~~Krl~~igventeenr~~yR~~lftsp~f~~~~IsGvILfe 80 (363)
T d1zaia1 1 PHSHPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCIGGVILFH 80 (363)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHTCTTCEEEEECCCHHHHHHHHHTTTCCCCHHHHHHHHHHHHTCCGGGTTTEEEEEECH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHCCEEEEECCH
T ss_conf 99877689999999999999980589869982689983777898769999778999999987148512205446897648
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 eTl~q~~~~g~~~~~ll~~kGIvPgIKVDkGl~~l~~~~ge~~t~gLd~L~~rl~~y~~~Ga~faKwRsVi~i~~~~ps~ 160 (363)
T d1zaia1 81 ETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKKDGADFAKWRCVLKIGEHTPSA 160 (363)
T ss_dssp HHHTCBCTTSCBHHHHHHHTTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHHHHTTCCEEEEEEEECCSSSCSCH
T ss_pred HHHHHHCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCC
T ss_conf 87511225998622566515854467347653336788644135662239999999986686513112102235677740
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~I~~na~~laryA~i~q~~GLVPIVEPEVlidg~h~~e~~~~vt~~vl~~v~~~l~~~~V~leg~lLKpnMv~~g~~~~ 240 (363)
T d1zaia1 161 LAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACT 240 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCCCCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 24899899999999999865842002353442476315788999999999999876412323467501355666754355
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~va~~Tv~~l~~~vp~~VpgIvfLSGGqS~eeAt~~LnamNk~~~~~pW~lsfSfgRALQ~~~lk~W~g~~~n~ 320 (363)
T d1zaia1 241 QKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENL 320 (363)
T ss_dssp SCCCHHHHHHHHHHHHHTTSCTTSCEEEECCTTCCHHHHHHHHHHHHHCSSCCCSEEEEEESHHHHHHHHHHHTTCGGGH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCH
T ss_conf 54886675566555654058977772110578765889999999986036899976999751766489999847882258
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------5
Q 000920 1082 ------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------~ 1082 (1223)
+
T Consensus 321 ~aaQ~~~~~ra~~Ns~A~~G~y~~~~e~~~~~~~~l~v~~~~y 363 (363)
T d1zaia1 321 KAAQEEYVKRALANSLACQGKYTPSGQAGAAASESLFISNHAY 363 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCSSSCCCCCCCCCCSCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999999985468765850787776754455520067659
|
| >d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27330.39 Aligned_cols=1 Identities=0% Similarity=-1.790 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 WLAEHMlIlgvt~P~g~~~yvaaAFPSaCGKTnlAMl~p~~pGwkv~~vGDDiawi~~~~dG~l~AiNPE~G~FGVapgt 80 (363)
T d1khba1 1 WLAEHMLVLGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGT 80 (363)
T ss_dssp CEEESCEEEEEECTTSCEEEEEEECCTTSCHHHHHTCCCCSTTCEEEEEESSCEEEEECTTSBEEEECCCSEEEEECTTC
T ss_pred CHHHHHHHHEECCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCEEEECCCCCCCCCCCCC
T ss_conf 92352343032489997799987567443421088718899996778941746777787889678536655753447898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~tnp~am~~l~~~~IFTNValt~DG~vwWeG~~~~~~~~~~~~~w~g~~~~~~~~~paaHpNsRFt~p~~qcp~id~~ 160 (363)
T d1khba1 81 SVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAA 160 (363)
T ss_dssp CTTTCHHHHHHTTBSCEEESCEEETTSCEECTTCCCCCCTTCCEECTTSSEECTTSSSCSSCTTCEEEEEGGGCTTBCTT
T ss_pred CCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf 98889999997536852443567789974678898889877524678899888888997778875202137669866843
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 wedP~GVpIsaiiFGGRr~~t~PlV~ea~~W~hGV~~GAtm~SE~TAAa~g~~g~vrrdPmAMlpF~gyn~gdY~~hWL~ 240 (363)
T d1khba1 161 WESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLS 240 (363)
T ss_dssp TTCTTCEEEEEEEEECCCSSSCCSEEECSSHHHHHHHHHTCEEEC--------CCEEECGGGCTTTCSSCHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCEEEEEEEECHHHHHHHHCCCCCEECCCHHHHHHCCCCHHHHHHHHHH
T ss_conf 35987514778997565688887248731466607873210104567764146864318066543328898999999876
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~g~~~~~k~PkIF~VNWFrKd~~GkFLWPGfGeN~RVLkWI~~Rv~G~~~A~eTPIG~vP~~~dLd~~GL~~~~~~el~~ 320 (363)
T d1khba1 241 MAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDGKASTKLTPIGYIPKEDALNLKGLGHINMMELFS 320 (363)
T ss_dssp GGGSTTCBCCEEEEECSCCBCTTSCBSSCCGGGGHHHHHHHHHHHTC--CEEEETTEEEECTTCSCCTTCCCCCHHHHTC
T ss_pred HHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHC
T ss_conf 51246567984799976534588886578863156999999998649755201676312683446866788666999838
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------5
Q 000920 1082 ------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------~ 1082 (1223)
.
T Consensus 321 vd~~~w~~E~~~i~~~f~~~~g~~LP~el~~eL~~Lk~RL~~m 363 (363)
T d1khba1 321 ISKEFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRISQM 363 (363)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 7999999999999999998733305099999999999999649
|
| >d1zq1a2 c.88.1.1 (A:76-438) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Glutaminase/Asparaginase superfamily: Glutaminase/Asparaginase family: Glutaminase/Asparaginase domain: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=0 Score=27327.63 Aligned_cols=1 Identities=0% Similarity=0.537 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~lPkI~ii~TGGTIa~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~~~~~~~~~~dS~~~~~~~~~ 80 (363)
T d1zq1a2 1 KPEVHFEALIEGKPGLPEVTIIGTGGTIASRIDYETGAVYPAFTAEELAKALPEIFEVANVKPKLLFNIFSEDMKPKHWV 80 (363)
T ss_dssp CCCCCCCSSCCCCTTCCEEEEEECSCCCCEEEETTTTEEEECCCHHHHHHHCGGGGGTSEEEEEECCCCCGGGCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHCCEEEEEEECCCCCHHCCHHHHH
T ss_conf 98644345688999999799997787314046687783378799999998575455125267999633896247999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~l~~~i~~~~~~~d~G~VvtHGTDTl~eTA~~L~~~l~~~~kPVVlTGa~~P~~~~~sDg~~NL~~Al~~A~~~~~~v~v 160 (363)
T d1zq1a2 81 KIAHEVAKALNSGDYGVVVAHGTDTMGYTAAALSFMLRNLGKPVVLVGAQRSSDRPSSDAAMNLICSVRMATSEVAEVMV 160 (363)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCSSSHHHHHHHHHHHEESCCSCEEEECCSSCTTSTTCSHHHHHHHHHHHHTSSBCSEEE
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99999998632777737983587739999999999724899638996334135677751077899999998565666326
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~i~~a~~v~K~~t~~~~aF~sp~~~pLg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~il~~~pG 240 (363)
T d1zq1a2 161 VMHGETGDTYCLAHRGTKVRKMHTSRRDAFRSINDVPIAKIWPNGEIEFLRKDYRKRSDEEVEVDDKIEEKVALVKVYPG 240 (363)
T ss_dssp EEESSSSSSCEEEEETTSEEECBSSCSTTEEECSSCCSEEECTTSCEEESCSCCCBCCCCCCEECCCCCCCEEEEECCTT
T ss_pred EEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 75200143145532131012345655444468776744899738879862454468887534554245785799993699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~l~~~~~~g~~GiVl~g~G~Gnvp~~~~~~l~~a~~~gi~VV~~Sqc~~G~v~~~~Y~~g~~l~~~GvI~~gdlt~ 320 (363)
T d1zq1a2 241 ISSEIIDFLVDKGYKGIVIEGTGLGHTPNDIIPSIERAVEEGVAVCMTSQCIYGRVNLNVYSTGRKLLKAGVIPCEDMLP 320 (363)
T ss_dssp CCTHHHHHHHHTTCSEEEEEEBTTTBCCGGGHHHHHHHHHTTCEEEEEESSSBSCCCCSSSHHHHHHHHTTCEECTTCCH
T ss_pred CCHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHCCEEECCCCCH
T ss_conf 99999999985798369998555888856788999999747926999368787885777654437788699898899899
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------5
Q 000920 1082 ------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------~ 1082 (1223)
+
T Consensus 321 ekArikLm~lL~~~~~~~eI~~~f~~nl~GE~t~~~~~~~~~~ 363 (363)
T d1zq1a2 321 ETAYVKLMWVLGHTQNLEEVRKMMLTNYAGEITPYTRFDTYLR 363 (363)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHSCSSTTSCSSCBTTCSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999999859999999999971366853688766666569
|
| >d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Hypothetical protein YteR domain: Hypothetical protein YteR species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=27325.90 Aligned_cols=1 Identities=100% Similarity=0.703 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~W~W~~G~~~~gl~~lye~Tgd~~y~~~a~~~~~~~~~~~g~~~~~~~~~d~~ 80 (363)
T d1nc5a_ 1 KSPLTYAEALANTIMNTYTVEELPPANRWHYHQGVFLCGVLRLWEATGEKRYFEYAKAYADLLIDDNGNLLFRRDELDAI 80 (363)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTTSSSTTCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHBCTTCCBCCCTTCGGGT
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 97579999999999973665348999982775649999999999883999999999999999844478745778987415
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~l~~ly~~Tgd~~y~~~a~~~~~~l~~~~~~~~g~~~~~~~~~~~~wiD~l~M~~p~l~~~~~~tgd~~y~d~a~~ 160 (363)
T d1nc5a_ 81 QAGLILFPLYEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDGYPYQMWLDGLYMGGPFALKYANLKQETELFDQVVL 160 (363)
T ss_dssp GGGGGHHHHHHHHCCHHHHHHHHHHHGGGGTSCBCTTSCBCSCTTSTTEEETHHHHHHHHHHHHHHHHHTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 88999999998728688999999999862137878878631367887773642067748999999998698789999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~l~d~~~gL~~h~~~~~~~~~~~~~~~~~~~~~WsRGngW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~~~~~ 240 (363)
T d1nc5a_ 161 QESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWARSIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSI 240 (363)
T ss_dssp HHHHHHHHHBCTTTSCBCSEEETTCCSTTSCTTTCBCSCCBHHHHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999997515889986525455676677788888786501100019999879999867777800999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~q~~d~G~w~~~~d~p~~~~~~~etSata~~~y~l~~g~~~g~l~~~y~~~~~ka~~~l~~~~~~~~~~g~~~v~~~~ 320 (363)
T d1nc5a_ 241 CRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDRAYETTLLKAYQGLIQHKTETSEDGAFLVKDIC 320 (363)
T ss_dssp HTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHHHEEECTTSCEEECCEE
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 84558878662310567777898633589999999999998758444999999999999999987403899874650357
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------5
Q 000920 1082 ------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------~ 1082 (1223)
|
T Consensus 321 ~g~~~~~~~~y~~~~~~~~~~~G~g~fllA~~e~~~l~~~~~~ 363 (363)
T d1nc5a_ 321 VGTSAGFYDYYVSRERSTNDLHGAGAFILAMTELEPLFRSAGK 363 (363)
T ss_dssp CSCCSCCHHHHHTSCEESSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7899998200126787578757799999999999999984289
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=100.00 E-value=0 Score=27325.58 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~e~LF~P~~ig~~~lkNRiv~apm~~~~a~~~g~~~~~~~~~yy~~ra~~Glii~e~~~V~~~~~~~~~~~~l~~d~~i~ 80 (363)
T d1vyra_ 1 AEKLFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIA 80 (363)
T ss_dssp CCSTTSCEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHH
T ss_pred CCCCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHCC
T ss_conf 95047983689989788738763468767798998989999999997086979981268885335799987437735503
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~k~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~ 160 (363)
T d1vyra_ 81 AWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVN 160 (363)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHH
T ss_pred CCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 20033445652697046644126765454436787630101223555555344766664557877764566777999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~f~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~ 240 (363)
T d1vyra_ 161 DFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQ 240 (363)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBT
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCC
T ss_conf 99999999997513403451467103111446766566654464033444767888765553047887412311323311
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~~~~~~~~~~~~~~~~~~~~vi~~G~~t~~~ae~~l~~G~~DlV~ 320 (363)
T d1vyra_ 241 NVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVA 320 (363)
T ss_dssp TBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEE
T ss_pred CHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCCCEEH
T ss_conf 10001330688999999877429806620347766786532888999898658539966899999999999879965115
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------5
Q 000920 1082 ------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~gR~liadP~~~~K~~~g~~~~~~~~~~~~~~~~~~y~~y~~~ 363 (363)
T d1vyra_ 321 FGRDYIANPDLVARLQKKAELNPQRPESFYGGGAEGYTDYPSL 363 (363)
T ss_dssp ESHHHHHCTTHHHHHHHTCCCCCCCGGGSSSSSSTTTTCSCCC
T ss_pred HHHHHHHCCCHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCC
T ss_conf 5499987921999998389999998754237999985789898
|
| >d1onha_ e.3.1.1 (A:) AMPC beta-Lactamase, class C {Enterobacter cloacae, P99, cephalosporinase [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: AMPC beta-Lactamase, class C species: Enterobacter cloacae, P99, cephalosporinase [TaxId: 550]
Probab=100.00 E-value=0 Score=27324.99 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 p~~~~~l~~~v~~~i~~~~~~~~~pG~~v~V~~~g~~~~~~~G~~~~~~~~p~~~dT~f~iaSitK~~ta~~i~~L~e~G 80 (363)
T d1onha_ 1 PVSEKQLAEVVANTVTPLMKAQSVPGMAVAVIYQGKPHYYTFGKADIAANKPVTPQTLFELGSISKTFTGVLGGDAIARG 80 (363)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTCSEEEEEEEETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCC
T ss_conf 98979999999999999998389986999999999999995876006779889999978720559999999999998669
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~l~lddpv~~ylp~~~~~~~~~ITi~~LL~HtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~~~llg~i 160 (363)
T d1onha_ 81 EISLDDPVTRYWPQLTGKQWQGIRMLDLATYTAGGLPLQVPDEVTDNASLLRFYQNWQPQWKPGTTRLYANASIGLFGAL 160 (363)
T ss_dssp SCCTTSBGGGTCTTCCCGGGTTCBHHHHHHTCSSCCCSSCCTTCCSHHHHHHHHHHCCCSSCTTSEECCCHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEHHHHH
T ss_conf 62242021011100244434555065676530467544586455788999999987554148740231256410013555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ie~~tg~~~~~~~~e~i~~PLgm~~t~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~aggl~st~~Dla~~~~~~l 240 (363)
T d1onha_ 161 AVKPSGMPYEQAMTTRVLKPLKLDHTWINVPKAEEAHYAWGYRDGKAVRAVRVSPGMLDAQAYGVKTNVQDMANWVMANM 240 (363)
T ss_dssp HTGGGTSCHHHHHHHHTTTTTTCTTEESSCCGGGGGGBCCEEETTEEECCCCCCSSTTHHHHHCCEECHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCEEECHHHHHHHHHHHH
T ss_conf 56404997004457888861696421446870014652136665974541011024445656614417999999999860
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~G~ 320 (363)
T d1onha_ 241 APENVADASLKQGIALAQSRYWRIGSMYQGLGWEMLNWPVEANTVVEGSDSKVALAPLPVAEVNPPAPPVKASWVHKTGS 320 (363)
T ss_dssp CGGGCCSHHHHHHHHHHTSEEEEETTEEECSSCEEEESSCCHHHHHHHHSHHHHTSCEECEEEEEEECCCSSEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHCEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 68877716788888775321045787566655020366655554445777542113444445677777778747972365
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------5
Q 000920 1082 ------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~G~~s~~~~~P~~~~~ivvl~N~~~~~~~~~~~a~~i~~al~ 363 (363)
T d1onha_ 321 TGGFGSYVAFIPEKQIGIVMLANTSYPNPARVEAAYHILEALQ 363 (363)
T ss_dssp CSSCEEEEEEEGGGTEEEEEEESBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 7875299999977997999997489998899999999999639
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=27324.87 Aligned_cols=1 Identities=0% Similarity=-0.725 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (363)
T d2c5aa1 1 TYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGV 80 (363)
T ss_dssp CCTTCCCCCSCTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTC
T ss_pred CHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCEEEEECHHHHHHHHHHHCC
T ss_conf 92231356737878987999788878999999999978298999968985211342356727993515589899876148
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~ 160 (363)
T d2c5aa1 81 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQD 160 (363)
T ss_dssp SEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSS
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76731023322222222222222222221246777767751752202446654235554456554554346677689888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~ 240 (363)
T d2c5aa1 161 AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECV 240 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHH
T ss_conf 78999999999999999984997899982157616876432222221100000113345543438998578874002778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~~~~~~~~~~d~ska~~~LGw~p~~sleegi~~t 320 (363)
T d2c5aa1 241 EGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRIT 320 (363)
T ss_dssp HHHHHHHHSSCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCCCCSBCEECCHHHHHHHSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999985788882797168765389999999998689875476899998641455889999986999788999999999
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------5
Q 000920 1082 ------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------~ 1082 (1223)
-
T Consensus 321 i~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (363)
T d2c5aa1 321 YFWIKEQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGSLRAADG 363 (363)
T ss_dssp HHHHHHHHHHHHHHTCCGGGGGSCCCCCCCCCCCTTCCCCSCC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
T ss_conf 9999998876541454432145331110105312476233789
|
| >d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: 3-isopropylmalate dehydrogenase, IPMDH species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=27324.62 Aligned_cols=1 Identities=0% Similarity=-1.723 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 M~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~t~e~i~~~dail~Gaig~P~ 80 (363)
T d1cnza_ 1 MSKNYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPK 80 (363)
T ss_dssp CCCCEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGG
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCCC
T ss_conf 99986699989888559999999999999866619706999996428799974996889999999850413772257878
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~~g~~~~~~~~~~~~~~~iD~vivREnteg~Y~g~~~~~~~~~~~~~ 160 (363)
T d1cnza_ 81 WENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK 160 (363)
T ss_dssp GTTSCGGGSTTHHHHHHHHHHHTCCEEEEEEECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEECCGGGCE
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCEE
T ss_conf 65543456644006799999738825777776125655323576554679842899874135433576531316885203
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~t~~~~~ri~r~Af~~A~~r~~kVt~v~KaNv~k~~~lf~~~~~eva~~yp~I~~~~~~vD~~~~~lv~~P~~f 240 (363)
T d1cnza_ 161 AFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQSSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQF 240 (363)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred ECCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCC
T ss_conf 32237764899999999999999966995689813753304487899999986228874975176658999986455777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 dViv~~Nl~GDIlSDl~a~l~GglG~~~s~ni~~~~~a~fEp~HGsapdiaGk~~aNP~a~Ils~ammL~~~lg~~~~A~ 320 (363)
T d1cnza_ 241 DVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAAT 320 (363)
T ss_dssp SEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTSCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CEEEEHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 66642357777678899887504542111034036407851677765334798864909999999999984189879999
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------5
Q 000920 1082 ------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~i~~Av~~~l~~g~~T~Dl~~~~~~~~T~e~~dai~~~l~~~~ 363 (363)
T d1cnza_ 321 AIEQAINRALEEGVRTGDLARGAAAVSTDEMGDIIARYVAEGV 363 (363)
T ss_dssp HHHHHHHHHHHTTCCCGGGTTTTTCCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999999999769967564689974899999999999987019
|
| >d1kwfa_ a.102.1.2 (A:) CelA cellulase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Six-hairpin glycosidases family: Cellulases catalytic domain domain: CelA cellulase species: Clostridium thermocellum [TaxId: 1515]
Probab=100.00 E-value=0 Score=27322.60 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~p~~~~~~~~~~~~~~~qa~~~~~~~~~w~~~k~~~~~~~~~~~~~rv~d~~~~~~~t~SEGQgYGMl~Av~~~d~~~ 80 (363)
T d1kwfa_ 1 AGVPFNTKYPYGPTSIADNQSEVTAMLKAEWEDWKSKRITSNGAGGYKRVQRDASTNYDTVSQGMGYGLLLAVCFNEQAL 80 (363)
T ss_dssp CCSSCCCCCSSSCSCSSSCHHHHHHHHHHHHHHHHHHHEECTTSTTSCEECCCGGGTTCEEHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 99887788888766778757899999999999999998066798872488717988987312789999999998499999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 Fd~l~~wt~~~l~~~~L~aW~~~~~~~~~~~~~d~n~AtDgDl~iA~ALl~A~~~Wg~~~~~~Y~~~A~~ii~~i~~~~v 160 (363)
T d1kwfa_ 81 FDDLYRYVKSHFNGNGLMHWHIDANNNVTSHDGGDGAATDADEDIALALIFADKLWGSSGAINYGQEARTLINNLYNHCV 160 (363)
T ss_dssp HHHHHHHHHTTBCTTSSBCSEECTTSCBCTTTTTTSCBHHHHHHHHHHHHHHHHHHCSSSSSCHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999974566888536778999877677888989768999999999999774874088999999999999998510
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~l~pg~~~~~~~~~npSY~~p~~~~~fa~~~~~~~W~~v~~~s~~ll~~~~~~~~~tGL~pDw~~~~~~p~~~~~ 240 (363)
T d1kwfa_ 161 EHGSYVLKPGDRWGGSSVTNPSYFAPAWYKVYAQYTGDTRWNQVADKCYQIVEEVKKYNNGTGLVPDWCTASGTPASGQS 240 (363)
T ss_dssp CTTTCCBCSBSSSCBTTBBCGGGCCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHTTTSTTSCCCCSSBCTTSSCCTTSC
T ss_pred CCCCCEECCCCCCCCCCEECHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78984553676568988558032359999999963687338999999999999976405888888400046888588898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~ydA~Rvp~~ia~d~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~G~~~~~~~~~~f~A~~~~~~~~~~~~~~ 320 (363)
T d1kwfa_ 241 YDYKYDATRYGWRTAVDYSWFGDQRAKANCDMLTKFFARDGAKGIVDGYTIQGSKISNNHNASFIGPVAAASMTGYDLNF 320 (363)
T ss_dssp CSBSTTGGGHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCGGGCCSCBCTTSCBCCCCCCTTTHHHHHHHHTTSSCHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf 87565599999999998750157145899999999998459888750481698446888979899999999873588589
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------5
Q 000920 1082 ------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~~YY~~~L~Ll~ll~~sG~~~~p~~~~ 363 (363)
T d1kwfa_ 321 AKELYRETVAVKDSEYYGYYGNSLRLLTLLYITGNFPNPLSDL 363 (363)
T ss_dssp HHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHTTCCCCTTSCC
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999987522467777887899999999999749989887679
|
| >d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid aminotransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily: D-aminoacid aminotransferase-like PLP-dependent enzymes family: D-aminoacid aminotransferase-like PLP-dependent enzymes domain: Branched-chain aminoacid aminotransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=0 Score=27320.52 Aligned_cols=1 Identities=0% Similarity=-0.426 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~d~m~~~~~~~~~W~ng~ivp~~~~~isp~~~~l~YG~gvFEgiR~y~ 80 (363)
T d2a1ha1 1 SSFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFK 80 (363)
T ss_dssp CCCCGGGCEECCCSSCCCCCCTTSCCCTTCSCCSEEEEEEEETTEECCCEEEESCCEEECTTBHHHHSCCEEECCEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEECCEEEECCCCEECCCHHHCCCCCEEEEEEEEEE
T ss_conf 97542115999767998898972237777755651799992288300887868412610720111304424353689998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~g~i~lFrld~Hl~RL~~Sa~~l~~~~~~~~~~~~~i~~~v~~n~~~v~~~~~~~~yiR~~v~~~~~~~~~~~~~~~~ 160 (363)
T d2a1ha1 81 GKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRAL 160 (363)
T ss_dssp CTTSCEEEESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSCCSEEE
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 79997899735788777888889757999876899999999998777526654465379997622677644566776662
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~k~~~ny~~~~la~~eA~~~G~de~l~L~~~dg~v~E~~~sN 240 (363)
T d2a1ha1 161 LFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMN 240 (363)
T ss_dssp EEEEEEEECCSSSSSSCCCEEEEECTTCCSCCTTSSTTSCBGGGTTTHHHHHHHHHHTTCSEEEEEETTTTEEEEETTEE
T ss_pred EEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCEEEECCCEE
T ss_conf 14897603456750013644689751011467545534214556422226888761489501100013451489616607
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 iF~v~~~kdG~~~l~tppl~~~ILpGITR~~Viela~~~g~i~V~Er~i~~~eL~~A~~~~~~dEvF~tgTa~~I~PV~~ 320 (363)
T d2a1ha1 241 IFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHR 320 (363)
T ss_dssp EEEEEECTTSCEEEEECCCSSSSCCCHHHHHHHHHHHHHTSSEEEECCCBHHHHHHHHHTTCEEEEEEEETTTEEEEEEE
T ss_pred EEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHCCCCCEEEECCCCCEEEEEEE
T ss_conf 99998358885799723654334674489999999997399820664779999996765599618998478858999999
Q ss_pred ------------------------------------------C
Q ss_conf ------------------------------------------5
Q 000920 1082 ------------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------------~ 1082 (1223)
.
T Consensus 321 I~~~~~~~~i~~g~~g~~it~~L~~~l~~iq~G~~~~~W~~~v 363 (363)
T d2a1ha1 321 ILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRAHEWMFPV 363 (363)
T ss_dssp EEETTEEEECTTGGGTTHHHHHHHHHHHHHHTTSSCCTTEEEC
T ss_pred EEECCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC
T ss_conf 9867964893899808899999999999976788899973579
|
| >d1umga_ d.280.1.1 (A:) ST0318 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Sulfolobus fructose-1,6-bisphosphatase-like superfamily: Sulfolobus fructose-1,6-bisphosphatase-like family: Sulfolobus fructose-1,6-bisphosphatase-like domain: ST0318 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=100.00 E-value=0 Score=27259.98 Aligned_cols=1 Identities=100% Similarity=0.703 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 k~TvSvIKADVGg~~GHt~~hp~ll~~a~~~l~~a~~~glliD~~v~~~GDDi~limTH~~G~d~~eiH~lAW~aF~~~t 80 (362)
T d1umga_ 1 KTTISVIKADIGSLAGHHIVHPDTMAAANKVLASAKEQGIILDYYITHVGDDLQLIMTHTRGELDTKVHETAWNAFKEAA 80 (362)
T ss_dssp CEEEEEEEECCCBBTTTTBCCHHHHHHHHHHHHHHHHTTSCSEEEEEEETTEEEEEEEESSCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 94699997236787777768989999999999861138868877667643742578754689894899999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~vAK~l~LYGAGQDLL~DaFSGNvkGmGPgvAEmEf~ERpsEp~~vF~aDKTePGAfNlPlY~~FaDPfnt~GLvidp~m 160 (362)
T d1umga_ 81 KVAKDLGLYAAGQDLLSDSFSGNVRGLGPGVAEMEIEERASEPIAIFMADKTEPGAYNLPLYKMFADPFNTPGLVIDPTM 160 (362)
T ss_dssp HHHHHTTCBTTTTTTCTTSSSSSCCCCCCEEEEEEECCCSSCEEEEEEEESBCGGGGHHHHHHHHHCTTTCTHHHHCGGG
T ss_pred HHHHHHCCCCCCCHHHCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEECCCC
T ss_conf 99887256556621211346765257787437887225789857999853888760120689984284578750317101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 h~Gf~FeV~Dv~~~k~i~l~~Pee~Ydllalig~~~RyvI~~V~~k~~~eiaav~St~RL~~iAG~YvGKDDPV~iVR~Q 240 (362)
T d1umga_ 161 HGGFKFEVLDVYQGEAVMLSAPQEIYDLLALIGTPARYVIRRVYRNEDNLLAAVVSIERLNLIAGKYVGKDDPVMIVRLQ 240 (362)
T ss_dssp TTCEEEEEEETTTTEEEEEETTTTHHHHHHHHTSTTTEEEEEEEETTTCCEEEEECCCCCBCC---CBCCCSCEEEEECS
T ss_pred CCCEEEEEEEECCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEHHHHHHHHCEECCCCCCEEEEEEC
T ss_conf 36705899970257178851806877899983898735899998668997789976678776406120688866999846
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~gfPA~gEvlepFa~phlVaGwmRGSH~gPlMPV~~~da~~trFdgpPrV~alGFql~~GkL~GP~DlFddpafD~~R~~ 320 (362)
T d1umga_ 241 HGLPALGEALEAFAFPHLVPGWMRGSHYGPLMPVSQRDAKATRFDGPPRLLGLGFNVKNGRLVGPTDLFDDPAFDETRRL 320 (362)
T ss_dssp SSSCCHHHHHHTTSSCCEEEETGGGCEEEECEEECSTTCSCCGGGCSCEEEEEEEEEETTEEEEEEESSCSGGGHHHHHH
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEECCCCCCCCCCCHHHHHHH
T ss_conf 88996465542244652114434566678743201456887567899768888888627887376324577430689999
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------5
Q 000920 1082 -----------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------~ 1082 (1223)
+
T Consensus 321 a~~~A~~mR~~Gpf~PhrLp~~emEYttlp~vl~kL~~rf~~ 362 (362)
T d1umga_ 321 ANIVADYMRRHGPFMPHRLEPTEMEYTTLPLILEKLKDRFKK 362 (362)
T ss_dssp HHHHHHHHHTTTTCTTTBCCGGGCSSCCHHHHHHHTTTTCCC
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 999999998549987655897880211388999999887519
|
| >d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Release factor superfamily: Release factor family: Release factor domain: Polypeptide chain release factor 2 (RF2) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27256.93 Aligned_cols=1 Identities=0% Similarity=-2.188 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL 80 (362)
T d1gqea_ 1 INPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGL 80 (362)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 91689999999999999997769798999999999986397144499999999999999999999999999999988877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~Ela~ee~deel~~e~~~~l~~l~~~l~~le~~ll~~~~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~r~ae~~gwk~ 160 (362)
T d1gqea_ 81 LELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKT 160 (362)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 87764110588888899999998622467787521367545454379998257606688999999999999999759858
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 eiid~~~~e~gG~K~v~~~I~G~~ayg~Lk~EsGvHRvqRvp~~es~gr~hTS~a~V~v~P~~~~~~~~~i~~~dl~i~~ 240 (362)
T d1gqea_ 161 EIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDV 240 (362)
T ss_dssp EEEEEEECSSSSEEEEEEEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEE
T ss_pred EEECCCCCCCCCEEEEEEEEECCCHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCEECCHHHEEEEE
T ss_conf 99414567766546999999776688999872375048884046777347998778899624787631111767827997
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~rs~g~GGQ~vN~t~savri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~i 320 (362)
T d1gqea_ 241 YRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWGSQI 320 (362)
T ss_dssp ECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCCSCSEE
T ss_pred EECCCCCCCCHHHHHCEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 52699886512033141688744733677764221014789999999999999999999999999887423127576984
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------5
Q 000920 1082 -----------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------~ 1082 (1223)
.
T Consensus 321 RtY~~~~~rv~DhR~~~~~~~~~~vl~G~ld~~i~a~l~~~~ 362 (362)
T d1gqea_ 321 RSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKAGL 362 (362)
T ss_dssp EEEEGGGTEEEETTTCCEESCHHHHHTTCCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCCCEECCHHHHHCCCHHHHHHHHHHCCC
T ss_conf 676589981500053972578468758877999999987779
|
| >d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: Branched-chain alpha-keto acid dehydrogenase, PP module species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=27254.15 Aligned_cols=1 Identities=0% Similarity=-1.158 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~r~l~~~g~~~~~~~~~ls~e~l~~~yr~M~~~R~~ee~~~~l~~~g~~~~~~~~~GqEA~~vg~~~al~ 80 (362)
T d1umda_ 1 HRFETFTEEPIRLIGEEGEWLGDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIR 80 (362)
T ss_dssp CCCCSSCSSCBCCBCTTSCBCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSC
T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCC
T ss_conf 99877886764777899989987899979999999999999999999999999977996022278978999999999758
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~D~~~~~yR~h~~~la~G~~~~~~~ae~~gk~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~~~~ 160 (362)
T d1umda_ 81 PGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRT 160 (362)
T ss_dssp TTTSEEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 78786873134189999987439999999845568986543542124212367444444223230077777876530344
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~ 240 (362)
T d1umda_ 161 GQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYY 240 (362)
T ss_dssp CCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHH
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHEEEEEEECCCHHHHHHH
T ss_conf 42356522688656773499997764336870366520366644321011145344422232100026744505889999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 a~~~Ai~~~R~g~gP~lIE~~tyR~~gHs~~Dd~~~YR~~~Ei~~w~~~DPi~~~~~~L~~~g~~se~e~~~i~~ei~~~ 320 (362)
T d1umda_ 241 VVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAE 320 (362)
T ss_dssp HHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHHTTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999985689789971334335787655202220014667773299899999999987999999999999999999
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------5
Q 000920 1082 -----------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------~ 1082 (1223)
.
T Consensus 321 V~~a~~~A~~~p~P~~~~l~~~VY~~~~~~l~~q~~~~~~~~ 362 (362)
T d1umda_ 321 LERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEEL 362 (362)
T ss_dssp HHHHHHHHHHTCBCCGGGGGTTSSSSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf 999999998679989899971315799963999999999559
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=100.00 E-value=0 Score=27250.96 Aligned_cols=1 Identities=100% Similarity=1.234 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~e~~ltFdDVlLvP~~Sti~s~r~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMDTVt~~~mA~~la~~Gglgvih 80 (362)
T d1pvna1 1 AKYYNEPCHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGISFIF 80 (362)
T ss_dssp CEECSSCBCCGGGEEECCCCBCTTCCGGGCBCCEECSCEETTSCCSCEESSSEEECSCTTTCSHHHHHHHHHTTCEEEEC
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEEE
T ss_conf 95456788785566983798767777101360268774024556663569847846888768999999999888977995
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 R~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ag~d~i~IDvAhG~~~~v~~~i~~ir~~~~~~~~IiAGNV 160 (362)
T d1pvna1 81 GSQSIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNI 160 (362)
T ss_dssp CSSCHHHHHHHHHHHHTCCCCCEEEECSSSHHHHHHHHHHHTCSEEEECCSCCCBHHHHHHHHHHHHHHGGGSCEEEEEE
T ss_pred ECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECHHCCCHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 05999999998642332023221211013567777777641854775300001015788999999886533103421244
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 aT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla 240 (362)
T d1pvna1 161 VDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALA 240 (362)
T ss_dssp CSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE
T ss_conf 67889999997297579844303434343655503771677999999999875332036875353323474662357888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~GAd~VM~G~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~g 320 (362)
T d1pvna1 241 MGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLN 320 (362)
T ss_dssp TTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSTTTCCGGGGCSSSCSSCSSCCBCEEEEECCBCHHHHHHHHHH
T ss_pred EECCCEEEHHHHHCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 71340021115405565577310103513666622531213322212446521036899737996268777889999999
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------5
Q 000920 1082 -----------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------~ 1082 (1223)
|
T Consensus 321 glrs~~~y~G~~~l~~~~~~~~f~~~t~~~~~E~~~H~~~~~ 362 (362)
T d1pvna1 321 KVKSTMCNCGALTIPQLQSKAKITLVSSVSIVEGGAHDVIVK 362 (362)
T ss_dssp HHHHHHHHTTCSBHHHHHHHCEEEEBCHHHHHHHSCCSSEEC
T ss_pred HHHHHHHHCCCCCHHHHHHCCEEEEECCCCCCCCCCCCEEEC
T ss_conf 999987532767599997488999988210211568826739
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=100.00 E-value=0 Score=27250.04 Aligned_cols=1 Identities=100% Similarity=2.464 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 ~~~~~~~~~~~~~~~f~le~G~~l~~~~l~Y~t~G~ln~~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~ 80 (362)
T d2pl5a1 1 GSIGIIETKYAEFKELILNNGSVLSPVVIAYETYGTLSSSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKS 80 (362)
T ss_dssp CCCCBCCCEEEEESCEECTTSCEESSEEEEEEEEECCCTTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSS
T ss_pred CCCCCEEEEEEECCCEECCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHCCCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 97673666688518756689887689569999630338889988998788776321155677667883358884599976
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 lDt~~yfVI~~n~lG~~~~ss~~~s~~p~~~~~yg~~fP~~t~~D~v~~~~~ll~~LGI~~l~~viG~SmGGmqAl~wA~ 160 (362)
T d2pl5a1 81 FDTNQYFIICSNVIGGCKGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESLGIEKLFCVAGGSMGGMQALEWSI 160 (362)
T ss_dssp EETTTCEEEEECCTTCSSSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHTTCSSEEEEEEETHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHH
T ss_conf 47553579962335676666675420012345557677520168899999999997186726777403577889999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~yPd~v~~~v~ia~sa~~s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~ 240 (362)
T d2pl5a1 161 AYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPR 240 (362)
T ss_dssp HSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCS
T ss_pred HCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
T ss_conf 48367664001346533677799999999999844974236875667836799999999999870926666563333444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~ve~yl~~~g~k~~~rfDan~yl~l~~a~~~~Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFpp~~~~~~a~ 320 (362)
T d2pl5a1 241 GNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVK 320 (362)
T ss_dssp SCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 55442067799999998988874078778999986311146333225999996189988999857552759999999999
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------5
Q 000920 1082 -----------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------~ 1082 (1223)
-
T Consensus 321 ~l~~a~~~v~~~eI~S~~GHdaFL~e~~~~~~~I~~FL~~p~ 362 (362)
T d2pl5a1 321 SLEAADKRVFYVELQSGEGHDSFLLKNPKQIEILKGFLENPN 362 (362)
T ss_dssp HHHHTTCCEEEEEECCCBSSGGGGSCCHHHHHHHHHHHHCCC
T ss_pred HHHHCCCCEEEEEECCCCCCCHHCCCHHHHHHHHHHHHCCCC
T ss_conf 997579976999948999742105488999999999973999
|
| >d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Bacterial luciferase-like family: Ssud-like monoxygenases domain: Alkanesulfonate monooxygenase SsuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27248.87 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~AE~lGfd~~w~~eh~~~~dp~~~la~la~~T~rI~lgt~V~~ 80 (362)
T d1nqka_ 1 MSLNMFWFLPTHGDGHYLGTEEGSRPVDHGYLQQIAQAADRLGYTGVLIPTGRSCEDAWLVAASMIPVTQRLKFLVALRP 80 (362)
T ss_dssp CCBEEEEECCTTCEESSTTSSTTEECCCHHHHHHHHHHHHHHTCSEEEECCSTTSCCHHHHHHTTSTTCSSCEEEEEECT
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCEEEEEEEECC
T ss_conf 92479997456899887888888788999999999999998499999968888888899999999997490699999739
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~P~~~A~~~AtLd~lS~GR~~lGlG~G~~~~e~~~~g~~~~~~~~~~~~~E~~~ilr~l~~~e~v~~~G~~~~~~~~ 160 (362)
T d1nqka_ 81 SVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDGVFLDHSERYEASAEFTQVWRRLLQRETVDFNGKHIHVRGA 160 (362)
T ss_dssp TTSCHHHHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHTCCCCTTHHHHHHHHHHHHHHHHTTTCCEEEECSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
T ss_conf 98986999999999999749985268863666888852122220245566678989999875025664554124652587
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~p~~~p~ppi~~a~~~p~~~~~Aa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Gr~~~~~~~~~~~~~~~~~~~~ 240 (362)
T d1nqka_ 161 KLLFPAIQQPYPPLYFGGSSDVAQELAAEQVDLYLTWGEPPELVKEKIEQVRAKAAAHGRKIRFGIRLHVIVRETNDEAW 240 (362)
T ss_dssp CCSSCCSSSSSSCEEEECSSHHHHHHHHHHCSEEEEECCCHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEESSHHHHH
T ss_pred CCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCHHHHH
T ss_conf 54234478997016874265789998874265512458999999999999999999709975242343699944689999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGtpe~V~e~L~~~~ 320 (362)
T d1nqka_ 241 QAAERLISHLDDETIAKAQAAFARTDSVGQQRMAALHNGKRDNLEISPNLWAGVGLVRGGAGTALVGDGPTVAARINEYA 320 (362)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHSCC-----------------CTTEEETTEEGGGGSSSSSCSCEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH
T ss_conf 98765665430889999986542012100466776530340144433467767777506888708858999999999999
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------5
Q 000920 1082 -----------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~G~d~~~l~~~~~~~~l~~f~eeV~P~l~~~~~~~~~~~~~ 362 (362)
T d1nqka_ 321 ALGIDSFVLSGYPHLEEAYRVGELLFPLLDVAIPEIPQPQPL 362 (362)
T ss_dssp TTTCCEEEEECSSHHHHHHHHHHHTGGGSCBCCCCCCCCCCC
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 729998999489998999999998999870135067899998
|
| >d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: 3-isopropylmalate dehydrogenase, IPMDH species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=27248.31 Aligned_cols=1 Identities=0% Similarity=-1.521 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~kI~vipGDGIGpEV~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~et~e~~~~~dail~Gai 80 (362)
T d1vlca_ 1 KIHHHHHHMKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSV 80 (362)
T ss_dssp CCCCCCSEEEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEEC
T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97768985799998988667999999999999998762997899998457899997789787899999999789871577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 g~p~~~~~~~~~~~~~~~~~~lR~~ldlyanvRP~r~~~~~~~~~~~~~~~~~~~iD~vivREnteg~Y~g~~~~~~~~~ 160 (362)
T d1vlca_ 81 GGPKWDDLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEK 160 (362)
T ss_dssp CCGGGTTSCSTTSHHHHTHHHHHHHTTCCEEEEEEECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEECSSC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCE
T ss_conf 79986543213477665578899974433220026753034566666555667772379850124675557777788856
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~t~~~~~Riar~Af~~A~~~~k~Vt~v~K~Nv~~~~~lf~~~~~eva~~yp~I~~~~~~vD~~~~~lv~~P~~f 240 (362)
T d1vlca_ 161 GFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVLYSSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQF 240 (362)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGC
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHCCCCC
T ss_conf 99989943478789999999998618980799943775201589999999999667986999730989999998665777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 dViv~~Nl~GDIlSDl~a~l~GglGl~ps~nig~~~~fE~~HGSApdiaGk~iaNP~a~ils~ammL~~~lg~~~~A~~i 320 (362)
T d1vlca_ 241 DVILTTNMFGDILSDESAALPGSLGLLPSASFGDKNLYEPAGGSAPDIAGKNIANPIAQILSLAMMLEHSFGMVEEARKI 320 (362)
T ss_dssp SEEEECHHHHHHHHHHHTTSSSCGGGCEEEEESSSEEEEESSCCCTTTTTTTCSCCHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 58985306666777899998513332101210422323125686201058986480999999999987346986999999
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------5
Q 000920 1082 -----------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~Av~~~l~~G~~T~Dlg~~~~~~~~T~e~~dav~~~l~~l~ 362 (362)
T d1vlca_ 321 ERAVELVIEEGYRTRDIAEDPEKAVSTSQMGDLICKKLEEIW 362 (362)
T ss_dssp HHHHHHHHHTTCCCGGGCSSGGGCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 999999998599570004699997769999999999999759
|
| >d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus [TaxId: 49283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Thiaminase I species: Paenibacillus thiaminolyticus [TaxId: 49283]
Probab=100.00 E-value=0 Score=27248.16 Aligned_cols=1 Identities=0% Similarity=-1.855 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~tl~~~~~~~~p~~~~~~~~~~~~F~~~~P~V~v~~~~~~~~~~~~~~~pDv~~~~~~~~~~~~~~g~l~~L~~~~~~~~ 80 (362)
T d3thia_ 1 ITLKVAIYPYVPDPARFQAAVLDQWQRQEPGVKLEFTDWDSYSADPPDDLDVFVLDSIFLSHFVDAGYLLPFGSQDIDQA 80 (362)
T ss_dssp CEEEEECCSCSSCHHHHHHHHHHHHHHHCTTSEEEECCCCTTTCCCCTTCCEEEEEGGGHHHHHHTTCEECBCGGGCTTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHCCCCCCEEEEECHHHHHHHHHCCCCCCCCHHHHHCC
T ss_conf 98999966788867999999999999988193899996652544489989699989088999998898233871011110
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~dG~~y~vP~~~~~~~~~ynkd~~~~aG~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (362)
T d3thia_ 81 EDVLPFALQGAKRNGEVYGLPQILCTNLLFYRKGDLKIGQVDNIYELYKKIGTSHSEQIPPPQNKGLLINMAGGTTKASM 160 (362)
T ss_dssp GGBCHHHHHHTEETTEECCEEEEEECEEEEEETTCHHHHTCCBHHHHHHHHCCCCCCCSSCCEEEEEEECCCSHHHHHHH
T ss_pred CHHHHHHHHCEEECCEEEEEEEECCCEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHH
T ss_conf 01113344311569979997651210799961468997389999973789999999751257887246305877526889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~ 240 (362)
T d3thia_ 161 YLEALIDVTGQYTEYDLLPPLDPLNDKVIRGLRLLINMAGEKPSQYVPEDGDAYVRASWFAQGSGRAFIGYSESMMRMGD 240 (362)
T ss_dssp HHHHHHHHHTCCCCCSSCCCSSSCCHHHHHHHHHHHHHHCHHHHHCCCTTCCTTHHHHHHHHTBEEEEEEETTHHHHHGG
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEECHHHHHHHHH
T ss_conf 99999861885113677633443679999999999997304775334466770122111005818999916587655543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~P~~~~~~~~~~~~~~~~i~~~s~~~e~A~~fi~fl~s~e~~~~~~~~~g~~~~~~~~~pa~~~~~e~~~~ 320 (362)
T d3thia_ 241 YAEQVRFKPISSSAGQDIPLFYSDVVSVNSKTAHPELAKKLANVMASADTVEQALRPQADGQYPQYLLPARHQVYEALMQ 320 (362)
T ss_dssp GGGTEEEECCBSCSSCCCCEEEEEEEEEETTCSCHHHHHHHHHHHHSHHHHHHHHSCCSTTCCCCCCEESBHHHHHHHTT
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 06766546415787789875450231101676479999999999719999999998468876742445057999863310
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------5
Q 000920 1082 -----------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~e~lg 362 (362)
T d3thia_ 321 DYPIYSELAQIVNKPSNRVFRLGPEVRTWLKDAKQVLPEALG 362 (362)
T ss_dssp TCTHHHHHHHHHTCTTCEECCCCTTHHHHHHHHTTTHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 398699999999987688761799999999999999998609
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=27247.76 Aligned_cols=1 Identities=0% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~p~~~g~~~~~~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~ 80 (362)
T d1q8ya_ 1 YHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGAN 80 (362)
T ss_dssp CCCCCTTCEETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHT
T ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf 97888888844785799899750778189999999999799999983431336899999999998401455555422767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~ 160 (362)
T d1q8ya_ 81 HILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLME 160 (362)
T ss_dssp TBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEE
T ss_pred CEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEE
T ss_conf 64789987631256520234320003542000001223467868999999999999988876405864656770570563
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~ 240 (362)
T d1q8ya_ 161 IVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKD 240 (362)
T ss_dssp EEETTTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CH
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 05765644305675314421234454223665210571321466777643201237899999878899898755432102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rp 320 (362)
T d1q8ya_ 241 DDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA 320 (362)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCB
T ss_pred HHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCC
T ss_conf 68999999983799878862453220001320122024323577644421000156743589999999998779945790
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------5
Q 000920 1082 -----------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------~ 1082 (1223)
+
T Consensus 321 ta~e~L~Hp~f~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 362 (362)
T d1q8ya_ 321 DAGGLVNHPWLKDTLGMEEIRVPDRELYGSGSDIPGWFEEVR 362 (362)
T ss_dssp CHHHHHTCGGGTTCTTCTTCCCTTSCTTCBSTTSTTSSSCCC
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
T ss_conf 899996693407898744477998666788899984354409
|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Mouse (Mus musculus), kif2c [TaxId: 10090]
Probab=100.00 E-value=0 Score=27247.61 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
T d1v8ka_ 1 PNWEFARMIKEFRVTMECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQ 80 (362)
T ss_dssp CCHHHHHHHHHHHHHHTCCTTTTTCTTSCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCE
T ss_conf 96689999999986413489877888888888999980899968863799469998899189981886444655676860
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~f~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifaYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lf~~~~~ 160 (362)
T d1v8ka_ 81 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQ 160 (362)
T ss_dssp EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTS
T ss_pred EEECCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHC
T ss_conf 67678661999998999999999999998741681388632578888603330577876555687133115567777630
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~~~~~~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~~T~~N~~S 240 (362)
T d1v8ka_ 161 PRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNS 240 (362)
T ss_dssp HHHHTTCCEEEEEEEEEETTEEEETTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CC
T ss_pred CCCCCCCHHHEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 12346323311021463277487634577544322124577465898899946889989987414545430245674567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 SRSH~i~~i~i~~~~~~~~~l~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~~L~~vi~aL~~~~~hiPyR~SkLT~l 320 (362)
T d1v8ka_ 241 SRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQV 320 (362)
T ss_dssp CSSEEEEEEEEESSSSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHH
T ss_pred CCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 51005799999855600136765202566554444453156553332211107789999999856999688746888886
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------5
Q 000920 1082 -----------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------~ 1082 (1223)
-
T Consensus 321 LkdsllGgns~t~~i~~vsp~~~~~~eTl~TL~fa~rak~It 362 (362)
T d1v8ka_ 321 LRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 362 (362)
T ss_dssp TTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 133047998619999996987010899999999999974379
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=100.00 E-value=0 Score=27247.61 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~q~~~~~l~e~a~~~~~~d~~lll~~y~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~nA~~fl~~~~Q~k~~k~~~~~v~ 80 (362)
T d1svma_ 1 KQVSWKLVTEYAMETKCDDVLLLLGMYLEFQYSFEMCLKCIKKEQPSHYKYHEKHYANAAIFADSKNQKTICQQAVDTVL 80 (362)
T ss_dssp CCCCHHHHHHHHHHTTCCCHHHHHHHHHGGGSCSTTCHHHHTTCCHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97428888988987589739999999998712518889999877789999999860669999873106899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~kr~~~~~ms~~e~i~~~~~~~~~~~p~~~~~~~~~d~~~~~~il~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 160 (362)
T d1svma_ 81 AKKRVDSLQLTREQMLTNRFNDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFK 160 (362)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 99997312699899999999999853863334544467888999999998644325899999999998289976769998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~DeiD~l~~~~dg~~ 240 (362)
T d1svma_ 161 GPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSV 240 (362)
T ss_dssp CSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSS
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCC
T ss_conf 99998889999999998599789997742011888875777799899999876541068997288750731134568860
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~p~i~ttN~~~~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l~~~~~~L~~li~~~s~ 320 (362)
T d1svma_ 241 KVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPV 320 (362)
T ss_dssp CEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHCHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCH
T ss_conf 13444210024553167724650654300122466736886268974789999999984035788888999987368987
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------5
Q 000920 1082 -----------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------~ 1082 (1223)
-
T Consensus 321 ~D~~~~i~~~~~~~~~~l~~ei~~~~~~~~k~~I~~Gk~ile 362 (362)
T d1svma_ 321 AEFAQSIQSRIVEWKERLDKEFSLSVYQKMKFNVAMGIGVLD 362 (362)
T ss_dssp GGSCGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999999987524149999999999976997779
|
| >d2drwa1 e.3.1.1 (A:2-363) D-Amino acid amidase DaaA {Ochrobactrum anthropi [TaxId: 529]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: D-Amino acid amidase DaaA species: Ochrobactrum anthropi [TaxId: 529]
Probab=100.00 E-value=0 Score=27247.20 Aligned_cols=1 Identities=0% Similarity=0.172 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~i~~~~~~~~~~g~~g~~v~v~~~g~~v~~~~~G~ad~~~~~p~t~dt~f~i~SvsK~~ta~~i~~lve~G~l~l 80 (362)
T d2drwa1 1 SDLNNAIQGILDDHVARGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDL 80 (362)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEEEEECTTSCEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSCCT
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCC
T ss_conf 95789999999999775997289999999999999857882056698799998697115689999999999997699877
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 dd~v~~ylp~~~~~~~iTi~~LL~htSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~Ysn~~~~llg~ii 160 (362)
T d2drwa1 81 DEPITRWFPDLPKAAQMPVRILLNHRSGLPDFETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYVLAGMII 160 (362)
T ss_dssp TSBGGGTCTTSTTGGGCBGGGGTTTCSCCCCCTTTSBSSCCCCCCHHHHHHHHHHHSCCCCTTSSCCCCSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCEECCCCHH
T ss_conf 76664420354434332335555326899764332223332321026777766406766532201102454311043022
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 e~~tg~~~~~~~~e~i~~PLgm~~T~~~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (362)
T d2drwa1 161 AHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDSTEWFPLSGANA 240 (362)
T ss_dssp HHHHTSCHHHHHHHHTHHHHTCCSCEETTTCCCCGGGBCCCEEECBTTCCSCSSBCTTCCCCBTTEEECTTTSCHHHHGG
T ss_pred HHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32057526666678888502876523357311454533310211556555643233345676566334621134445566
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 aGgl~sta~Dla~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yG~G~~~~~~~~~~~~gH~G~~~G~~s~~~~~ 320 (362)
T d2drwa1 241 AGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNIKPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRD 320 (362)
T ss_dssp GTCEEECHHHHHHHHHHHHTTSSSCHHHHHHHHTSCEECCCTTSCEEEECSSCEEEEETTEEEEEEEEEETTEEEEEEEC
T ss_pred CCCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCEEEEEEE
T ss_conf 57527189999999999847997899999999974256535799888704369998459941898246578823999999
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------5
Q 000920 1082 -----------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------~ 1082 (1223)
.
T Consensus 321 p~~~~~iv~l~N~~~~~~~~~~~~~~~~~~~~il~ai~~~~~ 362 (362)
T d2drwa1 321 EETGAALMLIQNSGAGDFESFYLKGVNEPVDRVLEAIKNSRS 362 (362)
T ss_dssp TTTCCEEEEEESEECSSTTSHHHHTTHHHHHHHHHHHHHHTC
T ss_pred ECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 879989999994999556899999999999999999975649
|
| >d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-hexosaminidase A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27246.31 Aligned_cols=1 Identities=0% Similarity=-1.225 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 f~~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHltD~~~~r~e~~~~p~l~~~ga~~~~~~~yT~~d~~elv~yA 80 (362)
T d2gjxa1 1 FPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYA 80 (362)
T ss_dssp CSEEEEEEETTTSCCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCBCCSSCTHHHHHHSSCTTTSCBCHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 98558677638888089999999999998299389999874787600147873144337868878863899999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~E~~~lF~~~~iHiGgDE~~~ 160 (362)
T d2gjxa1 81 RLRGIRVLAEFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFPDFYLHLGGDEVDF 160 (362)
T ss_dssp HHTTCEEEEECCCSSSCTTTTTTSTTCEEEEESSSSEEEEEEEECTTCHHHHHHHHHHHHHHHHHCCSSEEECCCCSCCS
T ss_pred HHCCCEEEECCCCCCHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 97598798536665046899874833137665788877755665777377899899999999885146537740540124
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~w~~~p~~~~~~~~~g~~~~~~~l~~~f~~~~~~~l~~~gk~~i~W~d~~~~~~~l~~d~ii~~W~~~~~~~~~~~~~~ 240 (362)
T d2gjxa1 161 TCWKSNPEIQDFMRKKGFGEDFKQLESFYIQTLLDIVSSYGKGYVVWQEVFDNKVKIQPDTIIQVWREDIPVNYMKELEL 240 (362)
T ss_dssp HHHHHCHHHHHHHHHHTCTTCSHHHHHHHHHHHHHHHHTTTCEEEEEHHHHHTTCCCCTTCEEEECCSSSSSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 43336878899998617788999999999999999999739706744410256777899872564314543668989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~G~~~i~s~~~yl~~~~~g~~w~~~y~~~p~~~~~~~~~~~~ilG~e~~lW~E~i~~~~l~~~~~PRl~A~AE~~Ws 320 (362)
T d2gjxa1 241 VTKAGFRALLSAPWYLNRISYGPDWKDFYVVEPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERLWS 320 (362)
T ss_dssp HHHTTCEEEECTTCCTTSCBSSCTHHHHHHCCTTCSSCCHHHHTTEEEEEEEECTTSCSTTTHHHHHTTHHHHHHHHHHS
T ss_pred HHHCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 97579859981674256567777656545531036766865650550347770107778510688899799999999859
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------5
Q 000920 1082 -----------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~d~~~f~~Rl~~~~~rL~~~Gi~~~p~~~~~c~~~~~~ 362 (362)
T d2gjxa1 321 NKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVGFCEQEFEQ 362 (362)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCSSCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCC
T ss_conf 987889999999999999999977998769998645420329
|
| >d1qjwa_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Trichoderma reesei, Cel6a [TaxId: 51453]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: 7-stranded beta/alpha barrel superfamily: Glycosyl hydrolases family 6, cellulases family: Glycosyl hydrolases family 6, cellulases domain: Cellobiohydrolase II (Cel6) species: Trichoderma reesei, Cel6a [TaxId: 51453]
Probab=100.00 E-value=0 Score=27246.05 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~gNPf~g~~~yvnP~y~a~v~~~a~~~~~~~~~~~~~~ia~~Pta~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (362)
T d1qjwa_ 1 ATYSGNPFVGVTPWANAYYASEVSSLAIPSLTGAMATAAAAVAKVPSFMWLDTLDKTPLMEQTLADIRTANKNGGNYAGQ 80 (362)
T ss_dssp CCCSSCTTTTSEECCCHHHHHHHHHHTGGGCCHHHHHHHHHHTTSCCCEEECSGGGHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 97678998897331473058899998751368788999999846780698237788740689999999998726887228
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 lV~Y~iP~RDC~a~ss~G~~~~~~~g~~~Yk~Yid~Ia~~~~~~~~~~~vvIlEPDsL~nlvt~~~~~~c~~~~~~~~~~ 160 (362)
T d1qjwa_ 81 FVVFDLPDRDCAALASNGEYSIADGGVAKYKNYIDTIRQIVVEYSDIRTLLVIEPDSLANLVTNLGTPKCANAQSAYLEC 160 (362)
T ss_dssp EEECCCTTCSTTCSTTCCSCCGGGTHHHHHHHHHHHHHHHHHHTTTSCEEEEECSSSHHHHHHCTTSHHHHTTHHHHHHH
T ss_pred EEEECCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99936999971444249986656554688999999999999856897439997776066654057844457789999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 l~yAv~~L~~pnv~vYlDaGhsgWlgw~~n~~~~a~~~a~~l~~ag~~~~~rGFatNVSNy~~~~~~~~~~~t~~n~~~~ 240 (362)
T d1qjwa_ 161 INYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYKNASSPRALRGLATNVANYNGWNITSPPSYTQGNAVYN 240 (362)
T ss_dssp HHHHHHHTCCTTEEEEEECCCTTTTCSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESTTSCCCSSCSSCCGGGTTCSCCS
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999970899748999788776678743214789999999984667542327898556887766677765445675514
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 e~~Y~~~l~~~l~~~G~~~~~fVIDTsRNG~gp~~~~~~g~WCNp~G~glG~~Pt~~t~~~~vDA~lWIK~PGESDG~~~ 320 (362)
T d1qjwa_ 241 EKLYIHAIGPLLANHGWSNAFFITDQGRSGKQPTGQQQWGDWCNVIGTGFGIRPSANTGDSLLDSFVWVKPGGECDGTSD 320 (362)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEECTTCSSSSCSCSSTTCCSSBSSCCCCSCCBSCCCCTTEEEEECCSCTTBCSCCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 89999999999985368899989857888999988767888879999847899988999876016898578826777888
Q ss_pred -----------------------------------------C
Q ss_conf -----------------------------------------5
Q 000920 1082 -----------------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~D~~c~~~~a~~~aP~AG~Wf~~~f~~Lv~nA~P~~~ 362 (362)
T d1qjwa_ 321 SSAPRFDSHCALPDALQPAPQAGAWFQAYFVQLLTNANPSFL 362 (362)
T ss_dssp TTSTTCCGGGGSTTBCSSCCSTTSBCHHHHHHHHHTCSSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 888777766676567899897777479999999972689779
|
| >d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiamin diphosphate-binding fold (THDP-binding) superfamily: Thiamin diphosphate-binding fold (THDP-binding) family: Branched-chain alpha-keto acid dehydrogenase PP module domain: E1-beta subunit of pyruvate dehydrogenase (PP module) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27176.06 Aligned_cols=1 Identities=0% Similarity=-1.690 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~lske~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~h~~~GqEa~~vg~~~~l~ 80 (361)
T d2ozla1 1 FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN 80 (361)
T ss_dssp CCSEEEEECCCCEEESCSCCSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 98876565353302015779988788899999999999999999999999999779875065687877999999998679
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~D~~~~~yR~~~~~la~G~~~~~~~ae~~gk~~g~~~G~~~~~h~~~~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v 160 (361)
T d2ozla1 81 PTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEV 160 (361)
T ss_dssp TTSEEECCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCCCBTTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCEECCCCCCHHEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 55785144444210223104610223312687565566554400123466667645445655157899997654058976
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~yaist~~~~~~~~~~~~~~~~~~~~~~vdGnD~~av~~a~~~A 240 (361)
T d2ozla1 161 CLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFA 240 (361)
T ss_dssp EEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEEEEETTCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 99972688766763236555554326765899986786667770110354220001365415996267705799999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~R~g~gP~liE~~TyR~~gHs~~D~~~~YR~~~Ei~~~~~k~DPi~~~~~~Li~~g~~se~e~~~i~~ei~~~V~~A 320 (361)
T d2ozla1 241 AAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDA 320 (361)
T ss_dssp HHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99986069888999865568887666652124777888744413899999999999879999999999999999999999
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------5
Q 000920 1082 ----------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~A~~sp~P~~~~l~~~VYa~~~p~~~~~~~~~~~~~~~~ 361 (361)
T d2ozla1 321 AQFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKSVS 361 (361)
T ss_dssp HHHHHHSCCCCGGGTTCSSSSSCCCEEEECSBTTCEEEECC
T ss_pred HHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 99998588969899973216899807877689996116789
|
| >d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Deoxyhypusine synthase, DHS domain: Deoxyhypusine synthase, DHS species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27174.29 Aligned_cols=1 Identities=0% Similarity=0.338 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~p~~a~~~v~~~s~~~p~~~~~V~g~df~~~~~~~~ll~~~~~~GFqA~~Lg~A~~i~~~Mi~~~~~~~~~~~~~~~~~~ 80 (361)
T d1dhsa_ 1 APAGALAAVLKHSSTLPPESTQVRGYDFNRGVNYRALLEAFGTTGFQATNFGRAVQQVNAMIEKKLEPLSQDEDQHADLT 80 (361)
T ss_dssp CCHHHHHHHSCCCCCCCTTCCCCCCCCGGGCCCHHHHHHGGGGTCHHHHHHHHHHHHHHHHHHHHTCCC-----------
T ss_pred CCHHHHHCCEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 95045424341678899999744178778998999999999873930788999999999998752257765422222234
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~ctIfLt~agam~saGlr~~i~~LIr~g~Vd~IVtTga~lehDi~~~~g~~y~g~f~~dd~~Lr~~ginRIgd 160 (361)
T d1dhsa_ 81 QSRRPLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFSLRGKELRENGINRIGN 160 (361)
T ss_dssp ------CSSEEEEEECTHHHHSTHHHHHHHHHHTTCCSEEEECHHHHHHHHHTTTSCCEECCTTCCHHHHHHTTEEEETT
T ss_pred CHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 00125666438986144411465799999999859977898068850399999808641076568848876437651220
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 v~Ipee~~~~~e~~i~~il~~~~~e~~~~~~~~~~~e~i~~lg~~i~~~~Sil~~A~~~~vPVf~Pa~~DssiG~~l~~~ 240 (361)
T d1dhsa_ 161 LLVPNENYCKFEDWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWAQKNHIPVFSPALTDGSLGDMIFFH 240 (361)
T ss_dssp EEEETHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHCCTTCHHHHHHHTTCCEECTTTTSSHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHH
T ss_conf 63177999999999999999999985404776464999999974268952499999982997654776516699999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~iD~~~D~~~l~~~~~~~~~~G~i~iGGGvpKh~i~~~~l~r~g~dyavqItta~~~dGslSGA~p~EaiSWG 320 (361)
T d1dhsa_ 241 SYKNPGLVLDIVEDLRLINTQAIFAKCTGMIILGGGVVKHHIANANLMRNGADYAVYINTAQEFDGSDSGARPDEAVSWG 320 (361)
T ss_dssp HHHSTTCCCCSHHHHHHHHHHHHTCSSEEEEEESCTHHHHHHHHHHHTTTSBSEEEEECCCCSTTCCSTTCCHHHHHHHT
T ss_pred HHCCCCCEEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 96189953559999999999987466762699959826378776455317998799970799986766689833013057
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------5
Q 000920 1082 ----------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------~ 1082 (1223)
-
T Consensus 321 Ki~~~a~~v~V~~DATIv~PLl~a~~~~k~~~~~~~~~~~~ 361 (361)
T d1dhsa_ 321 KIRVDAQPVKVYADASLVFPLLVAETFAQKMDAFMHEKNED 361 (361)
T ss_dssp SBCTTCCCEEECSCHHHHHHHHHHHTGGGGHHHHHHHTTCC
T ss_pred CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 61789883799960779999999999975401124322489
|
| >d1x1ia1 a.102.3.2 (A:26-386) Xanthan lyase {Bacillus sp. gl1 [TaxId: 84635]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha/alpha toroid superfamily: Chondroitin AC/alginate lyase family: Hyaluronate lyase-like catalytic, N-terminal domain domain: Xanthan lyase species: Bacillus sp. gl1 [TaxId: 84635]
Probab=100.00 E-value=0 Score=27173.80 Aligned_cols=1 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 sdd~~~lr~rw~~~l~g~~~~d~~d~~~~~~l~~l~~~A~~~~~~~~~~~~~~~lW~~l~~~~~~~~l~~~~~rl~~mA~ 80 (361)
T d1x1ia1 1 SDEFDALRIKWATLLTGGPALDPADSDIAARTDKLAQDANDYWEDMDLSSSRTYIWYALRGNGTSDNVNAVYERLRTMAL 80 (361)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCCTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCSCSSGGGCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 91899999999999708876786768999999999999997787458887766767888766630479999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 Ay~~pgs~ly~d~~l~~~I~~al~~~~~~~y~~~~~~~~~NWW~~eIg~P~~l~~~liLl~d~l~~~~~~~~~~~i~~f~ 160 (361)
T d1x1ia1 81 AATTVGSSLYGNADLKEDILDALDWLYVNSYNSTRSRSAYNWWHWQLGIPMSLNDIAVLLYDDISAARMATYMDTIDYFT 160 (361)
T ss_dssp HHHSTTCTTTTCHHHHHHHHHHHHHHHHHTSSTTSCTTSSSHHHHHTHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHC
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 98299985538999999999999999971888888998999125551757999999998514169999999998999857
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 p~~~~TGaN~~d~a~~~~~rglL~~d~~~~~~a~~~i~~~~~~~~v~~gdG~~~DgSf~qH~~~~Y~G~YG~~~l~~~~~ 240 (361)
T d1x1ia1 161 PSIGLTGAARAWQAIVVGVRAVIVKDAVKLAAARNGLSGTGIFPYATGGDGFYADGSFVQHTTFAYTGGYGSSVLETTAN 240 (361)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTSTTSSSCCSSSSEECTTSCEEETTTEECTTTHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCEECCCCEECCCCEECCCCCHHHHHHHHHH
T ss_conf 89886530788789999999998469999999999976401305526888651478634257710167533999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~l~gT~~~~~~~~~~~l~~~i~~g~~~~i~~g~~~~~v~GR~ISR~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~ 320 (361)
T d1x1ia1 241 LMYLLSGSTWSVSDPNQSNVWQWIYEAYRPLLYKGAMMDMVRGREISRSYAQDHAVGHGIVASIVRLAQFAPAPHAAAFK 320 (361)
T ss_dssp HHHHHTTSTTCCCCGGGGHHHHHHHHTTGGGEETTEECGGGSGGGGGCTTCCHHHHHHHHHHHHHHHTTTCCTTHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99997799887887899999999996002574377016657764014788654457999999999987229999999999
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------5
Q 000920 1082 ----------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~k~~~~~d~~~~~~~~~~~~~~~~~~~ll~d~~i~~~~~ 361 (361)
T d1x1ia1 321 QIAKRVIQEDTFSSFYGDVSTDTIRLAKAIVDDPSIAPAAA 361 (361)
T ss_dssp HHHHHHHHHCCSSCGGGGSCHHHHHHHHHHHTCTTCCCCCC
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999986076654235887889999999856898897879
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=27172.89 Aligned_cols=1 Identities=0% Similarity=-1.291 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~l~~pGP~~~~~~V~~A~~~~~~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~ 80 (361)
T d1m32a_ 1 YLLLTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVL 80 (361)
T ss_dssp CEECSSSSCCCCHHHHHTTCCCCCTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 95036999877799999851544698868999999999999999829899988999889789999999998654224653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~ 160 (361)
T d1m32a_ 81 IVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTY 160 (361)
T ss_dssp EEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEE
T ss_pred EEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 01101223457777655301233222234678640256899874247662699843002342011234442211452146
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 240 (361)
T d1m32a_ 161 IVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSP 240 (361)
T ss_dssp EEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCC
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
T ss_conf 75200256745532233445268763034533799866789625554100024566432200111011234566678777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~~~~~~~~~l~~~g 320 (361)
T d1m32a_ 241 THTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQG 320 (361)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 10446899999999985003566788899887777777622875467856649967999899988779999999999889
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------5
Q 000920 1082 ----------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------~ 1082 (1223)
.
T Consensus 321 i~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L~~~ 361 (361)
T d1m32a_ 321 FVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYWT 361 (361)
T ss_dssp EECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred CEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 28978986889989984788899999999999999975999
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=100.00 E-value=0 Score=27172.64 Aligned_cols=1 Identities=0% Similarity=-0.227 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ 80 (361)
T d2c0ra1 1 SERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQF 80 (361)
T ss_dssp CCCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHH
T ss_conf 99873357988188899999999987632146865434576898999999999999999968999878999788725999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~tg~~~~~~~i~~ 160 (361)
T d2c0ra1 81 AMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQFKA 160 (361)
T ss_dssp HHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCCTTEEEEEEESEETTTTEECSS
T ss_pred HHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCEECCEEEE
T ss_conf 99985255689823898404111125555430374012102343333415555542046761489972464125115777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~al~~vDavss~g~~~id~~~~di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (361)
T d2c0ra1 161 FPDTGSVPLIGDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPP 240 (361)
T ss_dssp CCCCTTSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCC
T ss_pred EECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 30468841899860333320234334325897413345245673799876876627443223324120003331014664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~~~~~~~~~L~~~G 320 (361)
T d2c0ra1 241 SFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEG 320 (361)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTT
T ss_pred CEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 20230115677766502424777789999998756665404654345777431454399997898546999999999788
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------5
Q 000920 1082 ----------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------~ 1082 (1223)
-
T Consensus 321 I~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~~~~ 361 (361)
T d2c0ra1 321 FVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRSRG 361 (361)
T ss_dssp EESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred CEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 88736988678698870688999999999999999999659
|
| >d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Nucleotidylyl transferase family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain domain: Methionyl-tRNA synthetase (MetRS) species: Pyrococcus abyssi [TaxId: 29292]
Probab=100.00 E-value=0 Score=27171.46 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~~~~~ 80 (361)
T d1rqga2 1 MVRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (361)
T ss_dssp CCEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 96599944898889873456445629999999999981599267158537650999999998299999999999986000
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~f~~~~~~ 160 (361)
T d1rqga2 81 TFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDF 160 (361)
T ss_dssp HHHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGTTTCCBCEEEEEEEEEECGGGT
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCHH
T ss_conf 00001222233544566002344553443101368533124664100022011033213589954310263478750113
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~d~~isr~~~wg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 240 (361)
T d1rqga2 161 AERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKP 240 (361)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCH
T ss_conf 54432101335433210345542002023333333346435667654346788278750345546564566676667733
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~G~KMSKSlGN~I~~ 320 (361)
T d1rqga2 241 NEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWV 320 (361)
T ss_dssp TTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBH
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCEECCCCCCCCCCH
T ss_conf 57777654016886348734655533100148999998632565542014778978897023975898668779988788
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------5
Q 000920 1082 ----------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------~ 1082 (1223)
.
T Consensus 321 ~d~i~~yg~D~lR~~l~~~~p~~~d~dfs~~~~~~~~n~~~ 361 (361)
T d1rqga2 321 HEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEEL 361 (361)
T ss_dssp HHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 99998868089999999608888999889999999864589
|
| >d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Homocysteine S-methyltransferase family: Homocysteine S-methyltransferase domain: Betaine-homocysteine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27169.32 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~llerL~~~~ililDGgmGteL~~rG~~~~~~Ws~~~~l~~Pe~V~~iH~~yi~AGAdiI~TNTy~a~~~~l~~~g~~~ 80 (361)
T d1lt7a_ 1 KGILERLNAGEIVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENRGNYV 80 (361)
T ss_dssp CCHHHHHHTTCCEECCTTHHHHHHHHTC-------------CHHHHHHHHHHHHHHTCSEEEEEC---------------
T ss_pred CHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCHHH
T ss_conf 95889862699799978889999977999899988688852959999999999996799998278857879998613266
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~aa~~~a~~~~~~~~~~VaGsigp~~~~~~~~~~~~~~~~~~~q~~~l~~~gvD~il~ETm~~~~Ea~~a 160 (361)
T d1lt7a_ 81 LEKISGQEVNEAAADIARQVADEGDALVAGGVSQTPSYLSAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWA 160 (361)
T ss_dssp --------CHHHHHHHHHHHHHTTTCEEEEEECCCHHHHTTCCHHHHHHHHHHHHHHHHHTTCSEEEECCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 78899999999999998510244321010256678631121104788999999899887504322336777568999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~a~~~~~~Pv~~s~t~~~~g~l~~g~~~e~~~~~~~~~~~~~g~nc~~~p~~~~~~i~~l~~~~~~~~~~~~~~~~p~~ 240 (361)
T d1lt7a_ 161 VETLIASGKPVAATMAIGPEGDLHGVPPGEAAVRLVKAGASIIGVNCHFDPTISLKTVKLMKEGLEAAQLKAHLMSQPLA 240 (361)
T ss_dssp HHHHGGGSSCEEEEECCBTTBSTTSCCHHHHHHHHHHTTCSEEEEESSSCHHHHHHHHHHHHHHHHHTTCCCEEEEECCS
T ss_pred HHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99986036608898787178863677849999988730620555214554676899999999765541455135404652
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~pn~~~~~~~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~Ga~iIGGCCGttP~HI~~la~~l~~~~~~~~p~~~~~~~ 320 (361)
T d1lt7a_ 241 YHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGS 320 (361)
T ss_dssp BCCTTCCTTCGGGSTTTTTSCGGGBCCHHHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHTHHHHSSCCC-------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 33778776566789887687665647999999999999987990999898798999999999985145899998888877
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------5
Q 000920 1082 ----------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 361 (361)
T d1lt7a_ 321 WGSGLDMHTKPWVRARARKEYWENLRIASGRPYNPSMSKPD 361 (361)
T ss_dssp -------------CTTSCHHHHHHCCCCCSCTTSCSCCCCC
T ss_pred CCCCEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 36776426875015446599998626678998881024898
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27169.16 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~ 80 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE 80 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCC
T ss_conf 92738789799998999999999985788899899898999999999999838999802599908889999987653111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~ 160 (361)
T d1d2fa_ 81 TGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMAD 160 (361)
T ss_dssp TTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 23223233334520368998503437861133332223322211021003677416873044432233320234343200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (361)
T d1d2fa_ 161 LCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSP 240 (361)
T ss_dssp HHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCCSC
T ss_pred HHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 11332200010234332323333456532222233333334454444445420034132267888876510223466510
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~ 320 (361)
T d1d2fa_ 241 SVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVA 320 (361)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCEE
T ss_conf 01247889987503411210133322036778888765310223355567415999983589999999999999869999
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------5
Q 000920 1082 ----------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------~ 1082 (1223)
+
T Consensus 321 v~pG~~F~~~~~~~vRis~~~~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 321 IMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp CEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf 98360018899987999971899999999999999999619
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=0 Score=27168.19 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 80 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 97999888767999999999977997899984798644277787653168847998657898999999975799999989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 Aa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~~ 160 (361)
T d1kewa_ 81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA 160 (361)
T ss_dssp CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSC
T ss_pred CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 60166666775999999999999999999999841222101468549999344101177866775434567887566889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v~D~a 240 (361)
T d1kewa_ 161 YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHA 240 (361)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCEEEECEEHHHHH
T ss_conf 99999899999999999999999968989999138568929985769999999997499817947999689078899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~ai~~~~~~~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~P~ 320 (361)
T d1kewa_ 241 RALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPL 320 (361)
T ss_dssp HHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCS
T ss_pred HHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEECHHHHHHHHCCCCC
T ss_conf 99999985698899699899997534777767653001233445676543255689999875531578999998799889
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------5
Q 000920 1082 ----------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~l~e~i~~ti~w~~~n~~~~~~~k~~~~~~~~~~~y~~~~ 361 (361)
T d1kewa_ 321 ETFESGIRKTVEWYLANTQWVNNVKSGAYQSWIEQNYEGRQ 361 (361)
T ss_dssp CCHHHHHHHHHHHHHHCHHHHHHSCCHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 89999999999999986998887661778999998515699
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=100.00 E-value=0 Score=27166.61 Aligned_cols=1 Identities=0% Similarity=1.068 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
+
T Consensus 1 ~~~~~~~~~~~~~q~f~w~~~~~~~~~~gi~~kLdylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~~~~~~~~~~~vd 80 (361)
T d1mxga2 1 AKYLELEEGGVIMQAFYWDVPGGGIWWDHIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVE 80 (361)
T ss_dssp CCSSCGGGTCCEEECCCTTCCCSSCHHHHHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSS
T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 93124455887999452687887855999999789999649998996957407999889998865665567543456778
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~Gt~~d~~~LV~~aH~~GikVIlD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (361)
T d1mxga2 81 TRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTDFSKVASGKYTANYLDFHPNELHCCDEGTFG 160 (361)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCCEEEEETTTTEEEEEECTTCTTCCSCCCGGGBSSSSSCSCCSCCCT
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78899999999999999779979998603255577656577666556545665567888766555676666554223456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~giDGfR~Daa~~v~~~f~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~ 240 (361)
T d1mxga2 161 GFPDICHHKEWDQYWLWKSNESYAAYLRSIGFDGWRFDYVKGYGAWVVRDWLNWWGGWAVGEYWDTNVDALLSWAYESGA 240 (361)
T ss_dssp TSCBBCTTSHHHHHHHTSSTTSHHHHHHHTTCCEEEETTGGGSCHHHHHHHHHHHCCCEEECCCCSCHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHCCHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHCCCC
T ss_conf 76423677605689999999987655441687604505421199999987775168733256346788998655532688
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~df~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fl~NHD~~R~~~~~~a~a~llt~pGiP~iyYGd~~~~ 320 (361)
T d1mxga2 241 KVFDFPLYYKMDEAFDNNNIPALVYALQNGQTVVSRDPFKAVTFVANHDTDIIWNKYPAYAFILTYEGQPVIFYRDFEEW 320 (361)
T ss_dssp EEECHHHHHHHHHHHTTTCHHHHHHHHHTTCSSTTTCTTTEEEESCCSSCCCCSCHHHHHHHHHHSSSEEEEEHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 43041589999999944983789999862521025798781336736678010158999999982899017885897566
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------5
Q 000920 1082 ----------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~d~~~f~R~gd~~~ 361 (361)
T d1mxga2 321 LNKDKLINLIWIHDHLAGGSTTIVYYDNDELIFVRNGDSRR 361 (361)
T ss_dssp SCHHHHHHHHHHHHHTCCSCEEEEEECSSEEEEEECCCSSC
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCCC
T ss_conf 77079999999999716798478987799899996788889
|
| >d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectate lyase-like domain: Pectate lyase species: Erwinia chrysanthemi, type A [TaxId: 556]
Probab=100.00 E-value=0 Score=27165.89 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~s~~~~G~a~~~ggttGG~gg~~g~v~~Vt~l~dL~~al~~~~~p~iI~v~G~I~~~~~~~~~~~~~~~~~ 80 (361)
T d1pe9a_ 1 AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKAR 80 (361)
T ss_dssp CCCCCTTTTCCCCSSSGGGSSSCCCTTTTCCGGGEEEECSHHHHHHHHTTTTSCEEEEECSEEETTTTCCCCSHHHHHHH
T ss_pred CCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 95212111322477634351799876888848779996999999998747997089998549978887443332220223
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~i~v~sn~TI~G~g~~~~i~~~gl~i~~~~~~~NVIiRnl~ir~~~~~~~~~~~~~~~~~~~Dai~i~~~s~~VwIDH~ 160 (361)
T d1pe9a_ 81 SQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHV 160 (361)
T ss_dssp SEEECCSSEEEEECTTCCEEESSEEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESC
T ss_pred CEEEECCCCEEEEECCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECC
T ss_conf 15871898579870688489621699850366426999827865575577765668775667873687517743999852
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 s~s~~~~~~~~~~~~~~~~~~~~Dg~~di~~~s~~vTiS~~~f~~h~~~~l~G~~d~~~~~d~g~~~vT~hhN~~~~~~~ 240 (361)
T d1pe9a_ 161 TISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTE 240 (361)
T ss_dssp EEECTTSCGGGCCEETTEECCCCCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEEEEE
T ss_pred EECCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 74058766533345567630541025875057431373387546877623735677776555786259997854268757
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 R~P~~r~G~~Hv~NNy~~n~~~~~~~~~~y~~~~~~~a~il~E~NyF~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~ 320 (361)
T d1pe9a_ 241 RAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSA 320 (361)
T ss_dssp CSSEESSCEEEEESCEEEEETTCSSSCCCCSEEECTTCEEEEESCEEEEETCCGGGGGGGEEESSCCEEEEESCEETTEE
T ss_pred CCCCEECCEEEEECCEEECCCCCCCCCCCEEEECCCCCEEEEECEEEECCCCCCCCCCCEEECCCCCEEECCCEEECCCC
T ss_conf 68873076489989665368676430001565057887799985088899987553220012178877955882520741
Q ss_pred ----------------------------------------C
Q ss_conf ----------------------------------------5
Q 000920 1082 ----------------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~~~py~y~~~~~a~~v~~~V~~~AGaGkl 361 (361)
T d1pe9a_ 321 VDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL 361 (361)
T ss_dssp CCCTTSSCBCCCSCCCSCCCCCCCCHHHHHHHHHHCSTTCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 23368765555667875210456257788988744798879
|
| >d1qo5a_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase {Human (Homo sapiens), liver isozyme [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Human (Homo sapiens), liver isozyme [TaxId: 9606]
Probab=100.00 E-value=0 Score=27100.27 Aligned_cols=1 Identities=0% Similarity=-0.758 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~e~~~eL~~~a~~~~~~GKGiLAaDeS~gT~~Krl~~igventeenr~~yR~~l~tt~~~~~~~IsGvILfe 80 (360)
T d1qo5a_ 1 AHRFPALTQEQKKELSEIAQSIVANGKGILAADESVGTMGNRLQRIKVENTEENRRQFREILFSVDSSINQSIGGVILFH 80 (360)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHSTTSCEEEEECCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSCGGGGGTEEEEEECT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHCCEEEEECCH
T ss_conf 99877689999999999999981489879982689983777898769999779999998888518703435656898369
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 eTl~q~~~~g~~~~~ll~~kGIvPgIKVDkGl~~l~~~~ge~~t~gLdgL~~Rl~~y~~~Ga~faKwRaVi~i~~~~ps~ 160 (360)
T d1qo5a_ 81 ETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAGTNKETTIQGLDGLSERCAQYKKDGVDFGKWRAVLRIADQCPSS 160 (360)
T ss_dssp TGGGCBCTTSCBHHHHHHHTTCEEEEECCCCEEECTTSSSCEEECCCTTHHHHHHHHHHTTCCEEEEEEEECCBTTBSCH
T ss_pred HHHHHHCCCCCCHHHHHHHCCCEEEEECCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCH
T ss_conf 99841423677466899865963578348750007667765335662018899999986474445212200245577745
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~I~~na~~laryA~i~q~~GLVPIVEPEVlidg~h~~e~~~~vt~~vl~~l~~~l~~~~V~LeG~lLKpnMv~pG~~~~ 240 (360)
T d1qo5a_ 161 LAIQENANALARYASICQQNGLVPIVEPEVIPDGDHDLEHCQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTAGHACT 240 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEECCBCCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88999999999999999971976431433245788746889999999999999887652134678742001025511055
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~va~~Tv~~l~~~vp~~VpgIvfLSGGqS~eeAt~~LnamN~~~~~~pW~lsfSygRALQ~s~Lk~W~g~~~n~ 320 (360)
T d1qo5a_ 241 KKYTPEQVAMATVTALHRTVPAAVPGICFLSGGMSEEDATLNLNAINLCPLPKPWKLSFSYGRALQASALAAWGGKAANK 320 (360)
T ss_dssp CCCCHHHHHHHHHHHHHHHSCTTCCEEEEBCTTCCHHHHHHHHHHHHHCSSCCCSEEEEEESGGGTHHHHHHHTTCGGGH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCHHH
T ss_conf 55787888899887764303667871001688744888999999986157899976899643756189999857881428
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------5
Q 000920 1082 ---------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~aQ~~~~~ra~~Ns~A~~G~y~~~~~~~~~~~~~lfva~ 360 (360)
T d1qo5a_ 321 EATQEAFMKRAMANCQAAKGQYVHTGSSGAASTQSLFTAC 360 (360)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCSCCCHHHHSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCC
T ss_conf 9999999999986068756740788887865443003139
|
| >d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Chorismate synthase, AroC superfamily: Chorismate synthase, AroC family: Chorismate synthase, AroC domain: Chorismate synthase, AroC species: Campylobacter jejuni [TaxId: 197]
Probab=100.00 E-value=0 Score=27099.98 Aligned_cols=1 Identities=0% Similarity=-1.523 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 mntfG~~~r~tt~GESHG~~lg~vidG~PaGl~i~~e~I~~~L~RR~pg~~~~t~R~E~D~veilSGv~~G~TtG~PI~~ 80 (360)
T d1sq1a_ 1 MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAI 80 (360)
T ss_dssp CCEECSSSEEEEECCGGGSCEEEEEECCCSSCBCCHHHHHHHHHHTTC-----------CCEEECSSEETTEECSSCEEE
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCEEEE
T ss_conf 98775523898525578884489993409588609999999996179999889867888717992263689876750078
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~RgggRsSaReTa~rVaaGaiAk~lL~~~gI~v~s~v~~IG~~~ 160 (360)
T d1sq1a_ 81 VVFNENAHSKDYDNLKDLFRPAHADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFDICVQSGVFGVGTFV 160 (360)
T ss_dssp EEC----------------------------------------CCCTHHHHHHHHHHHHHHHHTTTCEEEEEEEEETTEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEEEEEE
T ss_conf 88716787310466623678750777876553985776887515999999999999999999862100666788996661
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~s~vrc~d~~~~~~m~~~I~~ak~~gDSvGG~ve~~~~gvP~GLG~p~fdkLda~LA~A~mSIpAv 240 (360)
T d1sq1a_ 161 SNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGLGEVLYDKLDSKLAHALMGINAV 240 (360)
T ss_dssp CCSCGGGSCHHHHHHSTTCBSCTTTHHHHHHHHHHHHHTTCCCCEEEEEEEESCCBSCSBTTTBCHHHHHHHHHHTSTTE
T ss_pred CCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEECCCCCHHHHHHHHCCCCC
T ss_conf 47776646877732573347546778999999999854578763189999846997648601365135888777336310
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 KGVE~G~Gf~~a~~~GSe~nD~~~~~~~~tN~~GGi~GGiSnG~pi~~rva~KP~sSi~k~q~TVd~~~~~~~~~~~gRh 320 (360)
T d1sq1a_ 241 KAVEIGEGINASKMRGSCNNDALKDGKFLSNHSGGILGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLKFELKGRH 320 (360)
T ss_dssp EEEEETTGGGGGGSCHHHHCCCCSSSSCSCCTTCSEETTEEBSSCEEEEEEECCCC---------------------CCS
T ss_pred EEEEECCCHHHHHHHHHHCCCHHHCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 01530565565420066462222136644456786000235888628999978875567753222178988788557877
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------5
Q 000920 1082 ---------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------~ 1082 (1223)
-
T Consensus 321 Dpc~vprA~~V~Eam~a~vlad~~L~~~~~~~~~~~~~~g 360 (360)
T d1sq1a_ 321 DPCVGVRGSVVASAMVRLVLADCLLLNASANLNNLKNAYG 360 (360)
T ss_dssp CSCTHHHHHHHHHHHHHHHHHHHHHHTGGGSHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 8707165049999999999999999845779999875449
|
| >d1jdwa_ d.126.1.2 (A:) L-arginine: glycine amidinotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Pentein, beta/alpha-propeller superfamily: Pentein family: Amidinotransferase domain: L-arginine: glycine amidinotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27096.44 Aligned_cols=1 Identities=0% Similarity=-0.492 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
+
T Consensus 1 ~~vn~~sE~~~Lk~VivGr~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ea~ee~d~l~~~Le~~GV~V~r 80 (360)
T d1jdwa_ 1 CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRR 80 (360)
T ss_dssp CCCBBCBSSSCEEEEEECBCTTCBCCCCCHHHHTTSCGGGHHHHHHHTTSBSCHHHHHHHHHHHHHHHHHHHHTTCEEEC
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99722767463739999517767799976221347856665542332146455999999999999999999876967861
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~~~~~RD~~~~ig~~~i~~~~~~~~r~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (360)
T d1jdwa_ 81 PDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELY 160 (360)
T ss_dssp CCCCCTTCEEECSSCEEECCCBCCHHHHEEEEBTEEEECCBSCGGGTTGGGGTHHHHHHHHHTTCEEEECCCCCCCGGGB
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 46233310101000003675545476202663794233333456553524454157887514675304435543345333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~H 240 (360)
T d1jdwa_ 161 NQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMH 240 (360)
T ss_dssp CTTCCCSSHHHHHHHHHHTCCSBCSSSCCBCGGGEEEETTEEEECCCSSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCEEECCCCEEECCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHCC
T ss_conf 45544544454321112463254055125425420111652120234422135899998644665311102336733327
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 lD~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~N~LsI~p~~Vi~~~~n~~~~~~L 320 (360)
T d1jdwa_ 241 IDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMF 320 (360)
T ss_dssp STTTEEEEETTEEEECTTSCBTTHHHHHHTTCEEECCCCCCCCTTSCCSSSCGGGGGCCEEEETTEEEEETTCHHHHHHH
T ss_pred CCCEEEEECCCCEEEECCCCCHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHCCEEEEEEECCCEEEECCCCHHHHHHH
T ss_conf 66226871587189951336355531332585358535223454542153453051589997699999908889999999
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------5
Q 000920 1082 ---------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~Gi~vi~i~~~e~~~~~GG~~CmT~pl~Reg~~e~y~~ 360 (360)
T d1jdwa_ 321 EKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLD 360 (360)
T ss_dssp HHTTCEEEEECCHHHHTTTCCTTTTEEEEEESCCCCCSCC
T ss_pred HHCCCEEEEECHHHHHCCCCCCEEECCCEEECCCCCCCCC
T ss_conf 9888989992626543159997384725087786554669
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=100.00 E-value=0 Score=27096.44 Aligned_cols=1 Identities=0% Similarity=-1.224 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~ 80 (360)
T d1w23a_ 1 VKQVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQF 80 (360)
T ss_dssp CCCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHH
T ss_conf 98436707988488999999999998753046865434576788999999999999999968999878999478489999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~i~~ 160 (360)
T d1w23a_ 81 TMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQN 160 (360)
T ss_dssp HHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECSS
T ss_pred HHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCCCEEEEE
T ss_conf 99876411467654155324123334788777640201202444453201112200335553213754881665104432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (360)
T d1w23a_ 161 FPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPP 240 (360)
T ss_dssp CCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCC
T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 21463036986113453432243565542488504434457765046703434313445774200124543100013331
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~~~~~~~~~l~~~G 320 (360)
T d1w23a_ 241 TFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQG 320 (360)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTT
T ss_pred CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 20120015778777641004899999999999888887633520036888201640699998599735999999999789
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------5
Q 000920 1082 ---------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------~ 1082 (1223)
.
T Consensus 321 I~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~~~ 360 (360)
T d1w23a_ 321 FVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKENA 360 (360)
T ss_dssp EESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 8665077766717899508999999999999999998559
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27096.05 Aligned_cols=1 Identities=0% Similarity=-0.692 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a 80 (360)
T d1bjna_ 1 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAA 80 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHH
T ss_conf 93774798858899999999998751024686543457678899999999999999996899997799978826888863
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~i 160 (360)
T d1bjna_ 81 VPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDET 160 (360)
T ss_dssp HHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCCCCSSCSCEEECSEETTTTEECCCC
T ss_pred HHHCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCE
T ss_conf 00102566543330035630344687776417632121012477764035666412577604999655555457652100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~v~vDa~~~~~~~~vd~~~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (360)
T d1bjna_ 161 PDFGADVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPP 240 (360)
T ss_dssp CCCCTTCCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCC
T ss_pred ECCCCCCEEEEEEECCCCCEEEEECCCEEEEEECCCCCCCCCCCEEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 01244522565662352424436513305999726665447776267641012211446774112678876532024444
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~~~~~~~~~l~~~Gi 320 (360)
T d1bjna_ 241 TFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSALDKLFLEESFAAGL 320 (360)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 30278889999988641068999999999999988755335430125774344523999875885249999999997898
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------5
Q 000920 1082 ---------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~~~~ 360 (360)
T d1bjna_ 321 HALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERRHG 360 (360)
T ss_dssp ECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 7634877567388983488999999999999999999739
|
| >d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: AF1104-like superfamily: AF1104-like family: AF1104-like domain: Hypothetical protein At2g17340 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=0 Score=27095.53 Aligned_cols=1 Identities=0% Similarity=-0.825 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~v~~pll~~~~~~~y~~~tv~~~~~~~~~~~~~~~~~~Wl~~f~~~i~~~~~~A~s~~~~~da~~Ra~~f~~~y~~~L~ 80 (360)
T d1xfia_ 1 EMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYAGILE 80 (360)
T ss_dssp CCBCCTTSCSCCTTTCCSBCSCCCCTTSCTTSCCHHHHHHHHHHHTTHHHHHHHHHTCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 97566466774213766887788887555221526677999999977889999985089999889999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~l~~~p~~~g~~~~~~ll~~~re~~Lr~~Gf~DpY~~~K~~eN~~Al~~lp~~~~~id~i~d~~~~l~~~vr~aiAGNif 160 (360)
T d1xfia_ 81 DLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIF 160 (360)
T ss_dssp HHHHCTTGGGCSCCHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99848765576017889999999999976999800999999999999987999999753016079999999999987764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 D~Ga~~~~~~~~~~~~~~~~~~~~~~~rp~~vDd~d~~~~rl~~~~~k~vly~~DNaGe~Vfd~lL~~~rell~~g~~V~ 240 (360)
T d1xfia_ 161 DLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVV 240 (360)
T ss_dssp ---------------CCHHHHTTCSCCSSCSEECHHHHHHHHTTTCCCEEEEECCBTTHHHHHTHHHHHHHHHHTTCEEE
T ss_pred HCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 30220021444046426999999854589753669999998735775407999358734999887899999965898499
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 l~v~~~PilNDvT~~El~~~~~~~~~~~~~~~gld~~~~~Vv~sG~~~Pg~dL~~~s~E~~~~~~~aDLVI~KGMGr~~~ 320 (360)
T d1xfia_ 241 LAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADLVIVEGMGRGIE 320 (360)
T ss_dssp EEEBSSCCTTBCBHHHHHHHHHHHC--CCEETTEECTTEEEEECCCCSSSCCTTSBCHHHHHHHTTCSEEEEESHHHHTT
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCHHHHHHHHCCCEEEECCCCCHHH
T ss_conf 99888752336249999999998751205765202135189657999887185768999999983699999828751132
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------5
Q 000920 1082 ---------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------~ 1082 (1223)
.
T Consensus 321 tN~~a~f~c~~lkL~~vK~~~vA~~lGg~~~d~V~k~~~~ 360 (360)
T d1xfia_ 321 TNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEV 360 (360)
T ss_dssp BSTTCCCSSEEEEEEECCCHHHHHHHTCCTTCEEEEEECC
T ss_pred CCCHHHCCCCEEHHHHHCCHHHHHHHCCCCCCEEEEECCC
T ss_conf 0101322788103334258999999499611279982479
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=100.00 E-value=0 Score=27093.99 Aligned_cols=1 Identities=0% Similarity=0.039 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~lGl~~~i~~~~~~~ 80 (360)
T d1pn0a1 1 TKYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDM 80 (360)
T ss_dssp CCEEEEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCC
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCC
T ss_conf 99888788989989598999999998705332489868998689998868859998989999999869838999626776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~dg~~s 160 (360)
T d1pn0a1 81 STIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAY 160 (360)
T ss_dssp CEEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCC
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEEECCCC
T ss_conf 31599722667741112455543333344320253188999999999986165411356732563688638999605776
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (360)
T d1pn0a1 161 PVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMI 240 (360)
T ss_dssp CEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHTCCCE
T ss_pred CEEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCC
T ss_conf 35999998404566542331113787058866327765512456865302368888777631754332001011221110
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~l~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~ 320 (360)
T d1pn0a1 241 VTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRL 320 (360)
T ss_dssp ECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTCBCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHEEECCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 14444646928983675432050457887520889999999888876589738999999999999999999999999998
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------5
Q 000920 1082 ---------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~G~~~~y~~ 360 (360)
T d1pn0a1 321 FSGRPAKDVADEMGVSMDVFKEAFVKGNEFASGTAINYDE 360 (360)
T ss_dssp HHSCBCSSTTCTTSBCHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred HCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHEEECCCCCC
T ss_conf 7799368888860335587899999865554330766688
|
| >d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FabD/lysophospholipase-like superfamily: FabD/lysophospholipase-like family: Patatin domain: Patatin species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]
Probab=100.00 E-value=0 Score=27091.96 Aligned_cols=1 Identities=0% Similarity=-1.590 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~v~iLsldGGG~rG~~~~~vL~~L~~~~~~~~~~~~~~~~d~fD~i~GTS~Gaiia~~la~g~~~~~~~~~~~~~~~ 80 (360)
T d1oxwa_ 1 LGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIVP 80 (360)
T ss_dssp CCSCEEEEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHHH
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99700899989878999999999999997497234667997142099999963999999999869970318999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 160 (360)
T d1oxwa_ 81 FYFEHGPQIFNPSGQILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDIS 160 (360)
T ss_dssp HHHHHHHHHTCCCCCSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEESSSTTTCGGGCCBHHHHH
T ss_pred HHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHH
T ss_conf 99861210100123346764546999999999958701332167532673015888748973644356886322698861
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~ASsA~P~~F~p~~~~~~~~~~~~~~~~~~Dgg~~~~nnp~~~a~~e~~~l~~~~~~~~~~~~~~~~~~~~~s~gtg~~~ 240 (360)
T d1oxwa_ 161 YSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKMLLLSLGTGTTS 240 (360)
T ss_dssp HHHHCCTTTSCCEEEEEECTTSCEEEEEEEEGGGGTCSSCHHHHHHHHHHHTTTCGGGTTSTTCCGGGEEEEEECCCCBC
T ss_pred HHHHCCCCCCCCEEEECCCCCCCCEEEEECCCCHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 15513887778779732247787326774033542256726778999987624675322245677663155314666664
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~R~~~~~~~~~~~~lDd~s~~~l~~l~~ 320 (360)
T d1oxwa_ 241 EFDKTYTAKEAATWTAVHWMLVIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQ 320 (360)
T ss_dssp TTSSCCCHHHHTTCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCBCGGGGCTTCCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 33333212442001167689999999876559999999999987447988479974886656541146899999999999
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------5
Q 000920 1082 ---------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------~ 1082 (1223)
.
T Consensus 321 ~g~~~~~~~~~~~~~~~~~~~L~~~~~~L~~er~~r~~~~ 360 (360)
T d1oxwa_ 321 VGENLLKKPVSEDNPETYEEALKRFAKLLSDRKKLRANKA 360 (360)
T ss_dssp HHHHHHTSBSSSSCCCBHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999996330343066799999999999999998763059
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=100.00 E-value=0 Score=27091.69 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (360)
T d1kdga1 1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPFWWCKDI 80 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCTTBCTTB
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 95778998968899999999801879699998168987666543454422215764246763212211488755478655
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~gwp~~~~~l~py~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g 160 (360)
T d1kdga1 81 TVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAPYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQG 160 (360)
T ss_dssp SSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCCGGGSCCHHHHHHHHHHSCCBSCCSTTSCCCSCHHHHHHHHHHHTTT
T ss_pred CCCCEEEECCHHCCCCCCCCCCCHHHHEECCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 43101220111011333112244022100246653333013444333202332110037886344422589999999853
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~G~R~s~~~~yl~~a~~r~nl~i~t~~~V~rI~~d~~ra~GV~~~~~~~~~~~~~ 240 (360)
T d1kdga1 161 YNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFI 240 (360)
T ss_dssp CEECCGGGSTTCCTTEEEECCBCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEE
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCEEE
T ss_conf 16787455788544321000120135322322211356664266300104867999997299899999985236762489
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~v~a~~eVILsAGai~SP~LLl~SGIGp~~~L~~~gi~p~v~~~l~~~~~~~~~p~g~~~~~~~~~~~v~~~~~~~~g~~ 320 (360)
T d1kdga1 241 PVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMTTIGSSPQSAVVDSNVKVFGTN 320 (360)
T ss_dssp EEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTSHHHHHHSCCGGGCBCCCTTTTCBCSCTTTCSBCTTCBBTTCS
T ss_pred EEEECCEEEEECHHHHCHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCEEEECCCCCCCCEECCCCEEECCC
T ss_conf 99979999993656747299986589955666775328643445546453133663200017897562777531463368
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------5
Q 000920 1082 ---------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------~ 1082 (1223)
.
T Consensus 321 ~l~~~~a~~~p~~~~~~~~~~~~~~ae~aa~~il~~~~~~ 360 (360)
T d1kdga1 321 NLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILALAGGP 360 (360)
T ss_dssp SEEECSGGGCSSCCSSCSHHHHHHHHHHHHHHHHHSTTCC
T ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 8368854036545789977556588999998875204899
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=100.00 E-value=0 Score=27092.86 Aligned_cols=1 Identities=0% Similarity=-0.161 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~W~~~w~~~a~~~~~~a~~~~~~g~~~~A~~~~~~A~~~~~~a~~~~~ 80 (360)
T d2jbwa1 1 KPEDEMDNWGRLILDGVSYSDMVGARDRPKEITWFDYWMSLANEYEQEAERKVALGHDLSAGELLMSAALCAQYAQFLWF 80 (360)
T ss_dssp CHHHHHCCHHHHHHHTCCHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 92658888776761797589998630689942799999999999999999999769987899999999999997356557
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~ip~dg~~l~g~l~~P~~~~~~P~Vi~~hG~~~~~e~~~~~~~~l~~~G~~ 160 (360)
T d2jbwa1 81 DERRQKGQARKVELYQKAAPLLSPPAERHELVVDGIPMPVYVRIPEGPGPHPAVIMLGGLESTKEESFQMENLVLDRGMA 160 (360)
T ss_dssp STHHHHHHHHHHHHHHHHGGGSSSCEEEEEEEETTEEEEEEEECCSSSCCEEEEEEECCSSCCTTTTHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 93677899999999999986479873996357677666239993699999529999379876477899999999966998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 vl~~D~~G~G~s~~~~~~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~pri~a~V~~~~~~~~~~ 240 (360)
T d2jbwa1 161 TATFDGPGQGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSDLDY 240 (360)
T ss_dssp EEEECCTTSGGGTTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCTTCCEEEEESCCSCSTT
T ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHH
T ss_conf 99971642223576555656699999999999996600155553423331050999987515987554999746555777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~vp~~~~~~l~~~~~~~~~~l~~~~~g 320 (360)
T d2jbwa1 241 WDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDEVPLSFVDTVLELVPAEHLNLVVEKDG 320 (360)
T ss_dssp GGGSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSSSCTHHHHHHHHHSCGGGEEEEEETTC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 75433456677777506873577889877406645467527999899972999928999999999657998599997999
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------5
Q 000920 1082 ---------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------~ 1082 (1223)
.
T Consensus 321 ~H~~~~~~~~~~~~i~dWl~~~L~~g~~~apt~~~~p~~~ 360 (360)
T d2jbwa1 321 DHCCHNLGIRPRLEMADWLYDVLVAGKKVAPTMKGWPLEH 360 (360)
T ss_dssp CGGGGGGTTHHHHHHHHHHHHHHTSSCCCCCCEESCSCC-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 9677767579999999999998314897899877788889
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=0 Score=27093.43 Aligned_cols=1 Identities=0% Similarity=-0.426 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~ 80 (360)
T d1k32a3 1 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK 80 (360)
T ss_dssp ECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred CCCHHHCCCCCCCCCCEEEEEECCEEEEEECCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 98601005146889999999989969999899994899169998888999899999999992899899999899994887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~ 160 (360)
T d1k32a3 81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160 (360)
T ss_dssp CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred EECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCC
T ss_conf 50897127741211454321000111110000012221000000135520230121322566521233121100025654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 240 (360)
T d1k32a3 161 IHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 240 (360)
T ss_dssp EEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred EEEECCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCC
T ss_conf 26630455713530354322110012577999999959985575333544023203641179852469601206877767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~ 320 (360)
T d1k32a3 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL 320 (360)
T ss_dssp SCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEE
T ss_pred CCCCCCEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE
T ss_conf 15531136526654001012476752675413898569999735997069996489987999979997498864886879
Q ss_pred ---------------------------------------C
Q ss_conf ---------------------------------------5
Q 000920 1082 ---------------------------------------K 1082 (1223)
Q Consensus 1082 ---------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~~ 360 (360)
T d1k32a3 321 RLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360 (360)
T ss_dssp EECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCEE
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCCCCEEEEECCCCCC
T ss_conf 9999898999997899499999999985459984162259
|
| >d4bcla_ b.75.1.1 (A:) Bacteriochlorophyll A protein {Prosthecochloris aestuarii, strain 2k [TaxId: 1102]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Bacteriochlorophyll A protein superfamily: Bacteriochlorophyll A protein family: Bacteriochlorophyll A protein domain: Bacteriochlorophyll A protein species: Prosthecochloris aestuarii, strain 2k [TaxId: 1102]
Probab=100.00 E-value=0 Score=27027.85 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 tTtA~~Dyeiileggssswg~vk~rakvNVP~a~pllp~dc~iKi~~Kpl~~~kgvVR~t~~ieSiVDstknkl~vE~DI 80 (359)
T d4bcla_ 1 TTTAHSDYEIILEGGSSSWGQVKGRAKVNVPAAIPLLPTDCNIRIDAKPLDAQKGVVRFTTKIESVVDSVKNTLNVEVDI 80 (359)
T ss_dssp CCEEEEEEEEEECCTTCCCEEEEEEEEECSCCCCSSCCEEEEEEEEEEECC---CCEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEHHHHHHHCCEEEEEEEE
T ss_conf 94212334789707876531023567603898777766666227620205776786999864045776401404899862
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ANEtkdrRiavGEG~vsVGdFSH~FsfEGsVvnl~YyRsdavrrNvpnp~ymqGrqfHDi~mkVPldn~dlIdTWe~~~~ 160 (359)
T d4bcla_ 81 ANETKDRRIAVGEGSLSVGDFSHSFSFEGSVVNMYYYRSDAVRRNIPNPIYMQGRQFHDILMKVPLDNNDLVDTWEGFQQ 160 (359)
T ss_dssp EESSSSEEEEEEEEEEEETTEEEEEEEEEEEEEEESCCCHHHHTTCSSCCCCCEEEEEEEEEEEECCSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEECCCEEEECCCEEEEEEEEEEEEEEEECCHHHHHCCCCCEEECCCCHHHEEEECCCCCHHHHHHHHHHHH
T ss_conf 35787640673243387602224578620488999950146763599865552731100478558995568899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 a~~~~~~nF~dwIrdfWfIGPa~~al~egGQ~is~I~v~~~~~e~g~k~pvgv~rwrfsh~gsgivdsisrw~elfp~d~ 240 (359)
T d4bcla_ 161 SISGGGANFGDWIREFWFIGPAFAAINEGGQRISPIVVNSSNVEGGEKGPVGVTRWKFSHAGSGVVDSISRWTELFPVEQ 240 (359)
T ss_dssp HC---CCSHHHHHHHHHSTTTHHHHHHHTTEEECCCEEEEEEEECC---CEEEEEEEEEEEESSCCHHHHTTTTTCCGGG
T ss_pred HHHCCCCCHHHHHHHHEEECHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCHHH
T ss_conf 87538974566556514522778888752730330799741025688787553267863787510226777887477634
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 l~~pa~ieg~frsdsqgievkvdg~lpgvsvdaggg~rrilnhpliplvHHGmvgk~n~f~vd~q~kv~lPkGyK~ryaA 320 (359)
T d4bcla_ 241 LNKPASIEGGFRSDSQGIEVKVDGNLPGVSRDAGGGLRRILNHPLIPLVHHGMVGKFNDFTVDTQLKIVLPKGYKIRYAA 320 (359)
T ss_dssp CSSCEEEEEEEEECSSCEEEEEEEEETTSEEEEETTEEEECCCCHHHHHHHTTTTTSSCCEEEEEEEEECCTTCEEEEEE
T ss_pred CCCCCEECCCCCCCCCCEEEEEECCCCCEEECCCCCCHHHHCCCCCCEEECCCEECCCCCCEEEEEEEECCCCCEEEECC
T ss_conf 39850441454456774489982456860442788722441688620031230312577613368999726871676516
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------5
Q 000920 1082 --------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------~ 1082 (1223)
.
T Consensus 321 pqf~sqn~eey~wsGG~Ya~W~EhvCKGg~gqF~ilyaq 359 (359)
T d4bcla_ 321 PQFRSQNLEEYRWSGGAYARWVEHVCKGGTGQFEVLYAQ 359 (359)
T ss_dssp SCCSEEETTEEEEESHHHHHHHHHHHTTCCCCCEEEEEC
T ss_pred CHHHHCCHHHEEECCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 301001254368637147888875414887754788429
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=0 Score=27023.20 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~i~d~~~~A~~~lp~~~~~y~~gga~~~~t~~~N~~~Fd~i~l~pr~L~d~~~iDlst~~lG~~~~~P~~IspMtg 80 (359)
T d1goxa_ 1 MEITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAM 80 (359)
T ss_dssp CCCCSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSC
T ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCCCCCCCEEECCCCC
T ss_conf 95467999999999868888889870567741999999999984626331246887798755678835578615265323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 g~~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~ 160 (359)
T d1goxa_ 81 QKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 160 (359)
T ss_dssp GGGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSS
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 46677864787656688629722334554565023677469984112222106778999999888754033442224102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~kg~~~~~da~~ 240 (359)
T d1goxa_ 161 LGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARL 240 (359)
T ss_dssp CCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHH
T ss_conf 22344412442357853314566553036676556411799998513788999999999861566532200244688899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 a~~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~la~~g~ 320 (359)
T d1goxa_ 241 AVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGE 320 (359)
T ss_dssp HHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHH
T ss_pred HHHCCCCCEECCCCCCCCCCCCCCHHHHCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCH
T ss_conf 98706653220321110000000025445566503478621465057575778999998489989876899999984349
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------5
Q 000920 1082 --------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------~ 1082 (1223)
-
T Consensus 321 ~gv~~~i~~l~~EL~~~M~l~G~~~i~~L~~~~l~~~~~ 359 (359)
T d1goxa_ 321 AGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSBTTTCCGGGEEETTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCCCC
T ss_conf 999999999999999999985899978959954657899
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=100.00 E-value=0 Score=27020.30 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 m~~~~~l~M~gG~G~~SYa~NS~~Q~~~i~~~kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~ 80 (359)
T d1m6ex_ 1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEEL 80 (359)
T ss_dssp CCCHHHHCCCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHH
T ss_pred CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98417603379998533999999999999998999999999624677899865999727899965799999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~ 160 (359)
T d1m6ex_ 81 RKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIE 160 (359)
T ss_dssp HHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCC
T ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHCCCCCCEEEEEEHHHHHHHHCCCCCCC
T ss_conf 98638999972899847888526799998463012678875898657722320178874577642003344303885445
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eG 240 (359)
T d1m6ex_ 161 SNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEG 240 (359)
T ss_dssp CCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTT
T ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 78886797479998999999999999999999999998357857999985567898888863518999999999999859
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 lI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~~~~~~~~~~~~~~~d~~~~~~~~a~~~RA~~e~~l~~hf 320 (359)
T d1m6ex_ 241 LIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHF 320 (359)
T ss_dssp CSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTTCCSSTTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98899997316842668889999885148975655447654154201223444565889999999999999999999985
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------5
Q 000920 1082 --------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------~ 1082 (1223)
-
T Consensus 321 g~~i~D~lF~r~~~~v~~~~~~~~~~~~~~~~sL~rK~~ 359 (359)
T d1m6ex_ 321 GEAIIEDVFHRYKLLIIERMSKEKTKFINVIVSLIRKSD 359 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEEEEEBCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCC
T ss_conf 828899999999999996076549953999999996689
|
| >d1yvra1 a.118.25.1 (A:5-363) 60-kda SS-aARo ribonucleoprotein {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TROVE domain-like family: TROVE domain-like domain: 60-kda SS-aARo ribonucleoprotein species: African clawed frog (Xenopus laevis) [TaxId: 8355]
Probab=100.00 E-value=0 Score=27019.37 Aligned_cols=1 Identities=0% Similarity=-1.856 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~q~~p~~~~qv~N~aGg~a~~~~~~~~L~rfl~~Gt~~~tyY~~~~~l~~e~~~~l~~l~~~~~~~~~v~~l~~~~~~g 80 (359)
T d1yvra1 1 MDQTQPLNEKQVPNSEGCYVWQVSDMNRLRRFLCFGSEGGTYYIEEKKLGQENAEALLRLIEDGKGCEVVQEIKTFSQEG 80 (359)
T ss_dssp CCTTSCSSTTCEECTTSCEEEECCHHHHHHHHHHHCCTTCCSSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 98777698211556667720369989999999961368986745826526889999999997278278999999998437
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~r~~p~l~aLal~a~~~d~~~r~~a~~~~~~v~r~~~~L~~fv~~~~~~~~~~~~~~~gr~lrkav~~Wy~~~~~~~L 160 (359)
T d1yvra1 81 RAAKQEPTLFALAVCSQCSDIKTKQAAFRAVPEVCRIPTHLFTFIQFKKDLKEGMKCGMWGRALRKAVSDWYNTKDALNL 160 (359)
T ss_dssp CSSCSHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
T ss_conf 88784269999999986898889999999999996682189999999998536768786258999999999864998999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 A~~~~Ky~~r~gwShkDlLrl~Hpkp~~~~~~~l~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 240 (359)
T d1yvra1 161 AMAVTKYKQRNGWSHKDLLRLSHIKPANEGLTMVAKYVSKGWKEVQEAYKEKELSPETEKVLKYLEATERVKRTKDELEI 240 (359)
T ss_dssp HHHHTSCCCSSSCCHHHHHHHTTCCCSSHHHHHHHHHHHTCHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99998517778997999999808999847899999999638511111134433660379999999999998715878889
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~lI~~~~Lt~E~~p~~~~~~~~vWeaLi~~mp~~ALLRNL~~l~~~gvl~~~~~~~~~V~~rL~D~~~l~~arihP~~~ 320 (359)
T d1yvra1 241 IHLIDEYRLVREHLLTIHLKSKEIWKSLLQDMPLTALLRNLGKMTADSVLAPASSEVSSVCERLTNEKLLKKARIHPFHI 320 (359)
T ss_dssp HHHHHHHCCCGGGSCTTGGGCHHHHHHHHHTCCHHHHHHHHHHHHHTTTTCTTCHHHHHHHHHHTCHHHHHHTTCCHHHH
T ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCHHHH
T ss_conf 99999728989870144316899999998718899999978877452567877278999999847999999725582999
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------5
Q 000920 1082 --------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------~ 1082 (1223)
.
T Consensus 321 L~A~~~Y~~g~~~~~~~~w~p~~~i~~AL~~A~~~sf~~ 359 (359)
T d1yvra1 321 LVALETYKKGHGNRGKLRWIPDTSIVEALDNAFYKSFKL 359 (359)
T ss_dssp HHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999999984478666677788599999999999987079
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=27019.20 Aligned_cols=1 Identities=0% Similarity=0.537 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~l~~~~~~~~~r~~d~~fa~~~~~~~~~~~~l~~al~s~~~~~Gh~cl~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T d1w36d1 1 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNW 80 (359)
T ss_dssp CTHHHHHHHHHTTSSCHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHTTCSEEETTTTTTGGGGSSSCCCCSSCCTTCSTH
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCHHHCCCCCHHHH
T ss_conf 96899999998183568999999998558985899999999999839997627999751200244430222155558999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~l~~~~~v~~~~~~~p~vl~~~~lyl~~~~~~E~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~A~~~a 160 (359)
T d1w36d1 81 EECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVA 160 (359)
T ss_dssp HHHHHHSTTEESSSSCCSEEECSSEEEEHHHHHHHHHHHHHHTSCCBCCCCCHHHHHHHHHTTCCCTTSCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCEEEECCEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 99987276656777888658778884047899999999999998637799983789999997465765663899999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 l~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~~~~~~~~~~~~~~~~t~~ 240 (359)
T d1w36d1 161 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLH 240 (359)
T ss_dssp HTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTT
T ss_pred HCCCEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 70885999768988752169999999999875269828984375999999998887777645810445542013455789
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~ll~~~~~~~~~~~~~~~~l~~d~lIIDEaSmv~~~l~~~ll~~~~~~~~lILvGD~~QLppV~~G~vl~dl~~~~~~~~ 320 (359)
T d1w36d1 241 RLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF 320 (359)
T ss_dssp SCC-----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCC
T ss_pred HHHHHHHCCHHHHHHHHCCCCCCEEEEHHHHCCCHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHCCC
T ss_conf 98763100067777543666541346533214489999999987259998999777221668788818999999773477
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------5
Q 000920 1082 --------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~~~~l~r~~~~~~~~~~~~~~~~i~d~l~~L~knyR 359 (359)
T d1w36d1 321 TAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 359 (359)
T ss_dssp CHHHHHHHHHHSSSCCCCCSTTTTHHHHTTEEECCCCCC
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCHHCCHHHCCCCCCC
T ss_conf 899999999985410001333334202172112545789
|
| >d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: 2-methylacyl-CoA racemase Mcr species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=0 Score=27018.70 Aligned_cols=1 Identities=0% Similarity=-0.194 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~gPL~girVld~~~~~agp~~~~~lad~GA~VikvE~p~~~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i 80 (359)
T d1x74a1 1 AGPLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLI 80 (359)
T ss_dssp CCTTTTCEEEEECCSTHHHHHHHHHHHTTCEEEEEECC-----CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTTCSEEE
T ss_pred CCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCEEE
T ss_conf 98999989998278308999999999839979998999999813456651898599972859899999999986689988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~n~~pg~~~~lgl~~~~l~~~nP~lI~~sisgfG~~Gp~~~~~~~D~~~qA~sG~~~~~g~~~~~P~~~~~~~~d~~~g~ 160 (359)
T d1x74a1 81 EGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQAGHDINYISLNGILHAIGRGDERPVPPLNLVGDFGGGS 160 (359)
T ss_dssp ECSCTTHHHHHTCSHHHHHHHCTTCEEEEEESSCSSSTTTTSCCCHHHHHHHTSTGGGSSCTTSCCCCCTTCCCCCCTTH
T ss_pred ECCCCCCHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEHHHHHHHH
T ss_conf 66888736541898788776347816999968988898666565654455556622212789999878732189876799
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 l~aa~ailaAL~~R~~tG~Gq~VdvSl~ea~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~y~t~DG~~i~~~~~~ 240 (359)
T d1x74a1 161 MFLLVGILAALWERQSSGKGQVVDAAMVDGSSVLIQMMWAMRATGMWTDTRGANMLDGGAPYYDTYECADGRYVAVGAIE 240 (359)
T ss_dssp HHHHHHHHHHHHHHHHHSCCEEEEEEHHHHHHHHTHHHHHHHHTTSCCSSTTCSTTTTCSTTEEEEECTTSCEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEECC
T ss_conf 99999999999999856997486311167788877799999980798865688867666765476254788368996277
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~l~~d~~~~~~~~~~~~~~el~~~l~~~~~~~t~~e~~~~l~~~gvp~~pV~~~~ev~~dpq~~~r~~~~~ 320 (359)
T d1x74a1 241 PQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAFGEVHNEPHIIERNTFYE 320 (359)
T ss_dssp HHHHHHHHHHHTCCGGGSCCTTCGGGHHHHHHHHHHHHHTSCHHHHHHHTSSSSSCEEECCCHHHHTTCHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCHHHHHHCCEEE
T ss_conf 78777654121201344321101444688899998776666489999999767970895289999874978897199998
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------5
Q 000920 1082 --------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~~~~~p~~s~tp~~~~~~P~lGeht~eIL~e~lG 359 (359)
T d1x74a1 321 ANGGWQPMPAPRFSRTASSQPRPPAATIDIEAVLTDWDG 359 (359)
T ss_dssp CSSSEEECCSSEESSSCCCCCCCCCCCCCHHHHHHHHTC
T ss_pred ECCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 689114578878899998899999999789999997279
|
| >d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: Chelatase family: Ferrochelatase domain: Ferrochelatase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=27017.45 Aligned_cols=1 Identities=0% Similarity=-1.024 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~K~K~aVLl~n~G~P~s~~dv~~yL~~~~~d~~vi~~P~~~~l~~~i~~~r~~~~~~~Y~~igg~SPL~~~t~~q~~~l~ 80 (359)
T d2hrca1 1 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRLTPKIQEQYRRIGGGSPIKIWTSKQGEGMV 80 (359)
T ss_dssp CCCCEEEEEEECCCCSSGGGHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99966999974799999789999999974799721163488888887411008899999863899922999999999988
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~L~~~~~~~~~~~v~~amry~~P~i~~~l~~l~~~G~~~iv~lPLyPqyS~sTtgs~~~~~~k~l~~~~~~~~~~~~~i 160 (359)
T d2hrca1 81 KLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTI 160 (359)
T ss_dssp HHHHHHCGGGCSEEEEEEESSSSSBHHHHHHHHHHTTCSEEEEEESCSSCCTTTHHHHHHHHHHHHHHHTSCCSSEEEEE
T ss_pred HHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 89876347665437998514355305889999985587440010155423412003226899999998541013566434
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~p~yi~a~a~~i~~~~~~~~~~~~~~~~llfS~HglP~~~~~~gdpY~~q~~~t~~~i~~~l~~~~~~~~~fQSr 240 (359)
T d2hrca1 161 DRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSK 240 (359)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHTTSCGGGTTTCEEEEEEECCBHHHHTTTCSHHHHHHHHHHHHHHHTTTCSCEEEEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHEEEECC
T ss_conf 67788188999999999999972553357772699961123131454189517889999999998734430333244447
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~g~~~Wl~P~~~~~l~~l~~~G~k~v~v~p~gFvsD~lETl~Eidie~~e~~~~~~G~~~~~~vp~lN~~p~fi~~la~l 320 (359)
T d2hrca1 241 VGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADL 320 (359)
T ss_dssp CSSSCBSSSBHHHHHHHHHHTTCCEEEEEECSCSSCCHHHHTTTTTHHHHHSCSSSCCSEEEECCCSTTCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 79976679858999999997499739998986566534679988899999999975996489827999998999999999
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------5
Q 000920 1082 --------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------~ 1082 (1223)
.
T Consensus 321 v~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 359 (359)
T d2hrca1 321 VHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 359 (359)
T ss_dssp HHHHHHHTCSSCGGGGSCCTTCCCHHHHHHHHHHHTCCC
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 999864788777556888999887103888850053779
|
| >d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin lyase domain: Pectin lyase species: Aspergillus niger, type B [TaxId: 5061]
Probab=100.00 E-value=0 Score=27017.12 Aligned_cols=1 Identities=100% Similarity=1.234 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 a~v~g~a~Gfa~~ttGG~~g~v~~Vtt~~eL~~al~~~~PriI~~~gtid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T d1qcxa_ 1 AGVVGAAEGFAHGVTGGGSASPVYPTTTDELVSYLGDNEPRVIILDQTFDFTGTEGTETTTGCAPWGTASQCQVAINLHS 80 (359)
T ss_dssp CCCCSCCCGGGTTCCTTTTCCCBCCCSHHHHHHHHHSSSCEEEEECSEEECTTTTCEEEEEEECTTCSSTTBCEEECGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98776676055688788897489938999999986289974999886681344556322334245554322222325332
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~g~g~~~~~~~~NVIirnl~ir~~~~~~~~~~Dai~i~~ 160 (359)
T d1qcxa_ 81 WCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDD 160 (359)
T ss_dssp HHHHHCTTSCEEEEEEEGGGTSCEECCSSEEEEECTTCCEEESCCEEEETTCCCEEEESCEEEEECTTEETSCCSEEEES
T ss_pred CCCCCCCCCCCEEEEEECCCCCEEEECCCCEEEECCCCEEEECCCEEEEECCCCEEEECEEEECCCCCCCCCCCEEEEEC
T ss_conf 22344556762035530267650784798749851588189746568886784489969098558777787897478617
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 s~nvwIDH~s~s~~~d~~~~~~~~~s~~vTvs~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~vT~hhN~~~~~~~R~P~~ 240 (359)
T d1qcxa_ 161 SDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKV 240 (359)
T ss_dssp CCCEEEESCEEEEESSCSEEECSSCCEEEEEESCEEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEE
T ss_pred CCCEEEEEEECCCCCCCCEEEECCCCCCEEEECCEECCCCCCCCCCCCCCCCCCEECCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 88789982564456887537602677756865307616754101256567787400279861999925615887778606
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 r~g~~~hv~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~ 320 (359)
T d1qcxa_ 241 QGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPISGQLFSSPDANTNQQCASVFGRSCQLNAFGNSG 320 (359)
T ss_dssp CSSEEEEEESCEEEEEEEEEEEECTTEEEEEESCEEEEEEEEECSSCSSEEECCCSHHHHGGGHHHHSSCCCCCEEESCC
T ss_pred CCCCEEEEEEEEEECCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 07844899941796767778824775189998158889887665564320304687554531245556400011335676
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------5
Q 000920 1082 --------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------~ 1082 (1223)
|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~t~~~a~~v~~~V~~~AG~GK 359 (359)
T d1qcxa_ 321 SMSGSDTSIISKFAGKTIAAAHPPGAIAQWTMKNAGQGK 359 (359)
T ss_dssp CCCCBCGGGGGGGTTSCCCCCCCGGGHHHHHHHHSSTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 314688530046677663576899999987775289999
|
| >d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded right-handed beta-helix superfamily: Pectin lyase-like family: Pectin lyase domain: Pectin lyase species: Aspergillus niger, type A [TaxId: 5061]
Probab=100.00 E-value=0 Score=27015.62 Aligned_cols=1 Identities=0% Similarity=-1.788 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~v~~~a~Gfa~~ttGG~~g~~~~Vtt~~eL~~al~~~~PriI~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T d1idka_ 1 VGVSGSAEGFAKGVTGGGSATPVYPDTIDELVSYLGDDEARVIVLTKTFDFTDSEGTTTGTGCAPWGTASACQVAIDQDD 80 (359)
T ss_dssp CCCCSCCCGGGTTCCTTTTCCCBCCCSHHHHHHHHHSSSCEEEEECSEEECTTTTCEEEEEEECTTCSSTTBCEEECGGG
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97565574144578788897379938999999986289974999863480356644112333234565431101114443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~g~g~~i~~~~~NVIiRNl~i~~~~~~~~~~~DaI~i~~ 160 (359)
T d1idka_ 81 WCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDD 160 (359)
T ss_dssp HHHHHSCCSCEEEEEEESSTTSCEEECSSEEEEECTTTCEEESCCEEECTTCEEEEEESCEEEEECTTEETSCCSEEECS
T ss_pred CCCCCCCCCCCCEEEEECCCCCCEEECCCCEEEECCCCEEEECCCEEEEECCCEEEEECCEEECCCCCCCCCCCEEEEEC
T ss_conf 22235556763014532167770572799608861588499657468874682199979599568777787887588517
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 s~nVwIDH~s~s~~~d~~~~~~~~~s~~vTis~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vT~hhN~f~~~~~R~P~~ 240 (359)
T d1idka_ 161 CDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKV 240 (359)
T ss_dssp CEEEEEESCEEEEESSCSEEECCCTTCEEEEESCEEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBCSCTTEE
T ss_pred CCCEEEEEEEECCCCCCCEEEECCCCCCEEEECEEEECCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCEE
T ss_conf 86489980060357788635610578726620406523312234566556687332289862899924981577888401
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 r~g~~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 320 (359)
T d1idka_ 241 QDNTLLHAVNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDTVLETYEGEAFTVPSSTAGEVCSTYLGRDCVINGFGSSGT 320 (359)
T ss_dssp CTTCEEEEESCEEEEEEEEEEEECTTCEEEEESCEEEEEEEEEEEESSEEECCSSTTGGGGGHHHHSSCCCCCEEESSCC
T ss_pred CCCCEEEEECCEEECCCCEEEECCCCEEEEEECEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 34305999876997762557835775158996618867767754467723733567777421244476443113354664
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------5
Q 000920 1082 --------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~a~~v~~~V~~nAG~Gkl 359 (359)
T d1idka_ 321 FSEDSTSFLSDFEGKNIASASAYTSVASRVVANAGQGNL 359 (359)
T ss_dssp CCCBCCTTGGGGTTSCCCCCCCGGGHHHHHHHHCSTTCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 366776521355665545768878977766434898879
|
| >d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Dehydroquinate synthase-like superfamily: Dehydroquinate synthase-like family: Iron-containing alcohol dehydrogenase domain: Alcohol dehydrogenase TM0920 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=27016.95 Aligned_cols=1 Identities=0% Similarity=-1.655 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~f~f~~P~~i~fG~g~l~~l~~~~~~~g~k~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~~p~~~~v~~~~~ 80 (359)
T d1o2da_ 1 VWEFYMPTDVFFGEKILEKRGNIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVE 80 (359)
T ss_dssp CCCCCCCCEEEESTTHHHHHGGGGGGTCSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHH
T ss_pred CEECCCCCEEEEECCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 93737999899948999999999997599589998586888740999999999876984999757468979899987642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~D~IIavGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtgse~t~~avi~~~~~~~k~~ 160 (359)
T d1o2da_ 81 RYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTGSEVTPYSILTDPEGNKRGC 160 (359)
T ss_dssp HHTTSCCSEEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCCGGGCCEEEEECTTSCEEEE
T ss_pred HCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCHHCCCHHHHHHHHHCCCCC
T ss_conf 00135775688516642001899999998489971331167534457787588426455422114214545675500102
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~P~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~E~~~s~~~~~~~~~~a~~ai~~~~~~l~~~~~~~~~a~~~l~~as 240 (359)
T d1o2da_ 161 TLMFPVYAFLDPRYTYSMSDELTLSTGVDALSHAVEGYLSRKSTPPSDALAIEAMKIIHRNLPKAIEGNREARKKMFVAS 240 (359)
T ss_dssp ECCCCSEEEECGGGGGGCCHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 35778768860754058534445665317999988876400255156688999999999876532104699999877899
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~g~a~~~~g~g~~Hai~h~l~~~~~i~HG~~~ai~lp~v~~~~~~~~~ek~~~ia~~lg~~~~~~~~~lglp~~lg~~ 320 (359)
T d1o2da_ 241 CLAGMVIAQTGTTLAHALGYPLTTEKGIKHGKATGMVLPFVMEVMKEEIPEKVDTVNHIFGGSLLKFLKELGLYEKVAVS 320 (359)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTTCHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99987551678644410245213303877412578879999999998759999999999889999999985991005979
Q ss_pred --------------------------------------C
Q ss_conf --------------------------------------5
Q 000920 1082 --------------------------------------K 1082 (1223)
Q Consensus 1082 --------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~i~~~~~~a~~~~~~~~np~~~t~e~i~~il~~alg~ 359 (359)
T d1o2da_ 321 SEELEKWVEKGSRAKHLKNTPGTFTPEKIRNIYREALGV 359 (359)
T ss_dssp HHHHHHHHHHHTTCGGGGGSSSCCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 999999999987385021899468999999999987669
|
| >d2hdsa1 e.3.1.1 (A:4-361) AMPC beta-Lactamase, class C {Escherichia coli, cephalosporinase [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: beta-lactamase/transpeptidase-like superfamily: beta-lactamase/transpeptidase-like family: beta-Lactamase/D-ala carboxypeptidase domain: AMPC beta-Lactamase, class C species: Escherichia coli, cephalosporinase [TaxId: 562]
Probab=100.00 E-value=0 Score=26940.85 Aligned_cols=1 Identities=0% Similarity=0.670 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~p~~~~~~v~~~i~~~~~~~~ipG~~v~v~~~g~~~~~~~G~~~~~~~~~~~~dt~f~iaS~tK~~ta~~i~~lv~~G~l 80 (358)
T d2hdsa1 1 APQQINDIVHRTITPLIEQQKIPGMAVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEI 80 (358)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf 96789999999999999838998699999999999999688602566988999997863045999999999999755986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~ld~~v~~ylp~~~~~~~~~iTir~LLshtsG~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~Ysn~~~~llg~iie 160 (358)
T d2hdsa1 81 KLSDPTTKYWPELTAKQWNGITLLHLATYTAGGLPLQVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIGLFGALAV 160 (358)
T ss_dssp CTTSBHHHHCTTCCCGGGTTCBHHHHHHTCSSCCCSSCCTTCCSHHHHHHHHHHCCCSSCTTSEECCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHH
T ss_conf 42300010000002321101455665026768980430121222089999876175335898426743541110013231
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~tg~~~~~~~~~~i~~PLgm~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aggl~st~~Dla~f~~~~l~~~~~ 240 (358)
T d2hdsa1 161 KPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWGYREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLKPLDI 240 (358)
T ss_dssp GGGTSCHHHHHHHHTTTTTTCTTEESSCCGGGGGGBCCEEETTEEECCCCCTTHHHHTCCEECHHHHHHHHHHHHCGGGC
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHCCCCC
T ss_conf 13699821202667775059642527898467315102433686412344545578764623899999999998589987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~G~~~G~~ 320 (358)
T d2hdsa1 241 NEKTLQQGIQLAQSRYWQTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAITPPTPAVRASWVHKTGATGGFG 320 (358)
T ss_dssp SSHHHHHHHHHHTSEEEEETTEEECSSCEEEESSCCTHHHHTSTTSSSSCCCEECEEEEEEECCCSSEEEEEEEEETTEE
T ss_pred CHHHHHHHHHHHHCEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHH
T ss_conf 86888888877632302368766555402035667753234676655211234444556777777850797345267425
Q ss_pred -------------------------------------C
Q ss_conf -------------------------------------5
Q 000920 1082 -------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------~ 1082 (1223)
+
T Consensus 321 s~~~~~Pe~~~~ivvltN~~~~~~~~~~~~~~il~al~ 358 (358)
T d2hdsa1 321 SYVAFIPEKELGIVMLANKNYPNPARVDAAWQILNALQ 358 (358)
T ss_dssp EEEEEEGGGTEEEEEEESBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999987997999997799998789999999999759
|
| >d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: D-aminoacylase, catalytic domain domain: N-acyl-D-aminoacid amidohydrolase, catalytic domain species: Alcaligenes faecalis [TaxId: 511]
Probab=100.00 E-value=0 Score=26938.98 Aligned_cols=1 Identities=100% Similarity=1.833 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 GFID~HtH~D~~~~~~p~~~~~~~~GVTT~v~GncG~s~aP~~~~~~~~~~~~l~~g~~~~w~t~~eyl~~le~~~~~~N 80 (358)
T d1m7ja3 1 GFIDSHTHDDNYLLKHRDMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAAPPAVN 80 (358)
T ss_dssp CEEESSCCCTTHHHHCTTCHHHHTTTEEEEEESCTTCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHHHSCCSSE
T ss_pred CCEECCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 92522788845532597986414699764888177777145775442005778504777686789999999973587654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 va~~vgH~~lR~~vmg~~~~~at~~ei~~M~~ll~eal~~GA~G~Stgl~y~P~~~A~~~El~~lak~~~~~g~~~~~h~ 160 (358)
T d1m7ja3 81 AACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAIGISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATHM 160 (358)
T ss_dssp EEEEEEHHHHHHHHCSCCSSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSGGGTTCCHHHHHHHHTHHHHHTCEEEEEC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 03541455554415583023578899999999999999658765235775441035898999999988886098346653
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 r~~~~~~~~~~~e~~~~a~~~g~~~~ish~~~~~~~~~~~~~~~~~~~~~a~~G~~i~~d~yPy~ag~t~l~~~~~~~~~ 240 (358)
T d1m7ja3 161 RDEGEHIVQALEETFRIGRELDVPVVISHHKVMGKLNFGRSKETLALIEAAMASQDVSLDAYPYVAGSTMLKQDRVLLAG 240 (358)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHTSCEEECSCCCCSGGGTTTHHHHHHHHHHHHHHSCEEEEECSCSCEEEECCCCTTTTSS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHCC
T ss_conf 25663178888999999997298657513345777652568999999999863798641215854134522234444133
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~G~~l~eiA~~~g~~p~d~~~dl~~~~~~~~~~~e~~v~~~l~~p~~~igSDgga~~~~~hpr~~gt 320 (358)
T d1m7ja3 241 RTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDERPHPRLWGT 320 (358)
T ss_dssp CEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTTEEECCCCCTTCSSCCTHHHHH
T ss_pred CHHHHCCCCCHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 30110266676542574999998839987887888742210010589999999983999228767665789958888661
Q ss_pred -------------------------------------C
Q ss_conf -------------------------------------5
Q 000920 1082 -------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------~ 1082 (1223)
-
T Consensus 321 f~r~L~~~vRe~~~lsLeeAI~k~T~~pA~~~Gl~dRG 358 (358)
T d1m7ja3 321 FPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFGLAERG 358 (358)
T ss_dssp HHHHHCCCCCCTCSSCHHHHHHTTTHHHHHHHTCTTCS
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999567881789999999987999983987899
|
| >d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=26938.94 Aligned_cols=1 Identities=0% Similarity=-0.559 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~v~t~~nlk~~L~~A~~~~yAV~AfNv~n~e~~~Aii~AAee~~sPvIlq~s~g~~~y~gg~~~~~~~~~~ 80 (358)
T d1dosa_ 1 SKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQG 80 (358)
T ss_dssp CCGGGTCCSEECCTHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTH
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCHHHHHHHH
T ss_conf 94663346776757999999999998795699878698999999999999968998999061688770764156668767
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~a~~v~~~a~~~~VPV~lHLDHg~~~~~~~i~~~idag~~~~~~~~~~gfsSVMiDgS~l~~eeNi~~Tk~v 160 (358)
T d1dosa_ 81 AAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKY 160 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCSCSEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 88888898999999999837997899657652146778887788899999982777776556778857789999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ve~Ah~~gv~VEaElG~igg~Edg~~~~~~~~~~~~T~peea~~~~~ef~~~tgvD~LAvaiGt~HG~Yk~~~~~l~p~l 240 (358)
T d1dosa_ 161 LERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTI 240 (358)
T ss_dssp HHHHHHTTCEEEEECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTTCSCEEEECCSSCCCSSCCCSCCCCCTHH
T ss_pred HHHHHHHCCEEEEEEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCCCCCCCHH
T ss_conf 99985537768984336404567753210102330599899999999876467651565432614553478876677014
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~i~~~~~vp~~~~~LVlHGgSGip~e~i~~ai~~GV~KiNi~Tdlr~a~~~~ir~~~~~n~~~~~~~~~~~~~~ 320 (358)
T d1dosa_ 241 LRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGE 320 (358)
T ss_dssp HHHHHHHHHHHHTCCTTCSCEEECSCTTCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHHGGGSSSSEEETTEE
T ss_pred HHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCC
T ss_conf 69999999987289986534120588897688999999819848961719999999999999984846541113675444
Q ss_pred -------------------------------------C
Q ss_conf -------------------------------------5
Q 000920 1082 -------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~k~~fDPrk~l~~a~~am~~~v~~~~~~fgs~nkl 358 (358)
T d1dosa_ 321 DQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAIDVL 358 (358)
T ss_dssp EEECHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 57777767908889999999999999999982897779
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=100.00 E-value=0 Score=26938.77 Aligned_cols=1 Identities=0% Similarity=0.370 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~dpr~dP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~ 80 (358)
T d1jkma_ 1 PGRLGDESSGPRTDPRFSPAMVEALATFGLDAVAAAPPVSASDDLPTVLAAVGASHDGFQAVYDSIALDLPTDRDDVETS 80 (358)
T ss_dssp CHHHHCTTCCTTTCTTSCHHHHHHHHTTTTTSCCCCCSSCTTSCHHHHHHHHHHHHHHHHHHHHHSCCCCTTCCCCEEEE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 99888987786779998999999997536665677998783315599999987647999988755454269988885079
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~i~~~dg~~i~~~iy~P~~~~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla~~~~pe~~~p~ 160 (358)
T d1jkma_ 81 TETILGVDGNEITLHVFRPAGVEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAEGHHPFPS 160 (358)
T ss_dssp EEEEECTTSCEEEEEEEEETTCCSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEETTEECCTTH
T ss_pred EEEEECCCCCEEEEEEEECCCCCCCCCEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCH
T ss_conf 99996789988899999417888898749996387104066542221067888875100133000001246565677733
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 240 (358)
T d1jkma_ 161 GVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWDHERRLTELPSL 240 (358)
T ss_dssp HHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCCCTTSCHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCHHHCCCCCCH
T ss_conf 56777888889987232468754034444672679999999976527876542223455211366576411110234210
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D~l~~e~~~~~~~L~~aGv~v~~~~ 320 (358)
T d1jkma_ 241 VENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPLRDEGIAFARRLARAGVDVAARV 320 (358)
T ss_dssp HHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETTCTTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 00234445516666677642775577457300234530110258999899987887787999999999998799589999
Q ss_pred -------------------------------------C
Q ss_conf -------------------------------------5
Q 000920 1082 -------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~~~~~ 358 (358)
T d1jkma_ 321 NIGLVHGADVIFRHWLPAALESTVRDVAGFAADRARLR 358 (358)
T ss_dssp ETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 79896463542466697899999999999999897569
|
| >d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Endocellulase E1 species: Acidothermus cellulolyticus [TaxId: 28049]
Probab=100.00 E-value=0 Score=26938.42 Aligned_cols=1 Identities=0% Similarity=-0.393 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~g~l~~~G~~~~d~~G~~~~l~GvN~~g~~~~~~~~~~~~~~~~~~~~~~i~~~G~N~VRlpv~~~~~~~~~~~~~~~ 80 (358)
T d1ecea_ 1 AGGGYWHTSGREILDANNVPVRIAGINWFGFETCNYVVHGLWSRDYRSMLDQIKSLGYNTIRLPYSDDILKPGTMPNSIN 80 (358)
T ss_dssp CCCSCCEEETTEEECTTSCEECCEEEECCCBTTTTCSCTTTTTSCHHHHHHHHHHTTCCEEEEEEEGGGGSTTCCCCSCC
T ss_pred CCCCEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCHHHCCCCCCCCCCC
T ss_conf 99970996099799999989999987667411345666667724799999999976998899347688746877777755
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~ld~~v~~a~~~Gl~Vildlh~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~v~~~el~ 160 (358)
T d1ecea_ 81 FYQMNQDLQGLTSLQVMDKIVAYAGQIGLRIILDRHRPDCSGQSALWYTSSVSEATWISDLQALAQRYKGNPTVVGFDLH 160 (358)
T ss_dssp CSSSCTTTTTCCHHHHHHHHHHHHHHTTCEEEEEEEESBTTBCCSSSCCSSSCHHHHHHHHHHHHHHTTTCTTEEEEECS
T ss_pred CCCCCHHHHCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 33368111011699999999999997899066401356666888655688277999999999998864476536755320
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 NEP~~~~~~~~~~~~~~~~~~~~~~~~~Ir~~d~~~~v~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~H~Y 240 (358)
T d1ecea_ 161 NEPHDPACWGCGDPSIDWRLAAERAGNAVLSVNPNLLIFVEGVQSYNGDSYWWGGNLQGAGQYPVVLNVPNRLVYSAHDY 240 (358)
T ss_dssp SCCCTTCBSSCCCTTTBHHHHHHHHHHHHHHHCTTSEEEEECBSEETTEECSTTTBCTTTTTSCCCCSSSSCEEEEEECC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEC
T ss_conf 33456776775413455899999999999850899589996546676665322566430432776678667658986414
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~igEfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~~W~ 320 (358)
T d1ecea_ 241 ATSVYPQTWFSDPTFPNNMPGIWNKNWGYLFNQNIAPVWLGEFGTTLQSTTDQTWLKTLVQYLRPTAQYGADSFQWTFWS 320 (358)
T ss_dssp CTTTCCCGGGSCTTTTTTHHHHHHHHTHHHHHTTSSCEEEEECCCCCCSHHHHHHHHHHHHHTCCHHHHTTSSCEEEESC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 78767753456630356677788889999998459709992678888999869999999999999998540181699973
Q ss_pred -------------------------------------C
Q ss_conf -------------------------------------5
Q 000920 1082 -------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------~ 1082 (1223)
.
T Consensus 321 ~k~~~~~~~G~~~~dw~~~~~~~~~~i~~~~~~~~~~~ 358 (358)
T d1ecea_ 321 WNPDSGDTGGILKDDWQTVDTVKDGYLAPIKSSIFDPV 358 (358)
T ss_dssp SCSCCTTTCCSBCTTSSSBCHHHHHHHGGGCCCCCCCC
T ss_pred CCCCCCCCCCEECCCCCCCCHHHHHHCCCCCCCCCCCC
T ss_conf 77777887640169888878366532030213568989
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=26940.65 Aligned_cols=1 Identities=0% Similarity=-0.825 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 dRv~P~C~~f~~CGGC~~qh~~y~~Ql~~K~~~l~~~~~~~~~~v~~~~p~~YR~r~~~~v~~~~~~~~~~~Gf~~~~s~ 80 (358)
T d1uwva2 1 ERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS 80 (358)
T ss_dssp TBCCCSCTTTTTBTTCSCTTBCHHHHHHHHHHHHHHHHTSCCCEEECCCSSSCBSEEEEEEEEETTTTEEEEEEEBTTSS
T ss_pred CCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCC
T ss_conf 98898999999485861008999999999999999862765676657888777415999845765889569989735884
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~iV~i~~C~i~~~~i~~~l~~lr~~l~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (358)
T d1uwva2 81 DIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP 160 (358)
T ss_dssp CEEECSCCTTBCHHHHHHHHHHHHHHTTCGGGGGEEEEEEEEETTEEEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 06614125145577999999988754033445520399999831880899995266677789999975311363899940
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~g~~~~~~~~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gv 240 (358)
T d1uwva2 161 DSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGV 240 (358)
T ss_dssp SSSCCEEEECCCCEEEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEE
T ss_pred CCEEEEEECCCCEEEECCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHCCCCCCEEEEC
T ss_conf 43367762487248960888999877133003303446779889875246788449995366665521003565279822
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 E~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~~~~~~ivYVSCnp~Tl 320 (358)
T d1uwva2 241 EGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATL 320 (358)
T ss_dssp ESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHHHHCCSEEEEEESCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf 47499999999848755324621342204543234455404675599679973479999999974999899992898998
Q ss_pred -------------------------------------C
Q ss_conf -------------------------------------5
Q 000920 1082 -------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------~ 1082 (1223)
.
T Consensus 321 aRDl~~l~~~gy~l~~i~~~D~FP~T~HvE~v~~l~Rv 358 (358)
T d1uwva2 321 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRV 358 (358)
T ss_dssp HHHHHHHHHTTCEEEEEEEECCSTTSSCCEEEEEEEC-
T ss_pred HHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEEEEC
T ss_conf 87799998779767599997359998618999999969
|
| >d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic domain {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Chitinase A, catalytic domain species: Serratia marcescens [TaxId: 615]
Probab=100.00 E-value=0 Score=26935.30 Aligned_cols=1 Identities=0% Similarity=0.138 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~Yy~~W~~y~~~~~~~~I~~~~~THi~YAFa~v~~~~~~~~~~~~~~~~~~ 80 (358)
T d1edqa2 1 TDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTHLLYGFIPICGGNGINDSLKEIEGSFQ 80 (358)
T ss_dssp TTCTTSCCCCCCCCTTCCCBCCCSSCEEEEEEEGGGGSTTCCCGGGSCGGGCSEEEEEEECBCCCTTTSGGGGGSTTHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCHHHCCEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99754688779778889888789998999995952023899992469986797699950772698874654222333222
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~LK~~~p~lKvllSiGGw~~s~~~~~~a~~~~R~~ 160 (358)
T d1edqa2 81 ALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKVKRDR 160 (358)
T ss_dssp HHHHHTTTCCTTSBCCSCHHHHHTSCBTTBCSTTCSSCHHHHHHHHHHHHCTTCEEEEEEECSSSCGGGGGTTSHHHHHH
T ss_pred CCCCCCCCCCCCCEEECCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf 22224466777615612714432033467664344344289999999974899769999989987888602358789999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 Fi~svv~~l~~y~~fDGIDIDWEyP~~~g~~~~~~~~~D~~nf~~Ll~eLR~~l~~~~~~~~~~~~ls~a~~~~~~~~~~ 240 (358)
T d1edqa2 161 FVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDK 240 (358)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECSCTTSCSSCTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECSHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHH
T ss_conf 99999999998353786131124323345778778978998999999999999887643317742025650476445413
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~l~~~vD~inlMtYD~~G~w~~~~~g~~t~l~~~~~~~~~~~~v~~~v~~~~~~Gvp~~KlvlGip~YGRs~~~K~ 320 (358)
T d1edqa2 241 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGTAMDARSVQAKG 320 (358)
T ss_dssp SCHHHHGGGCSEEEEECCCSSCTTCSSSCCCSSCSSCCTTCTTCSCCHHHHHHHHHHHTCCGGGEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHH
T ss_conf 21777863378898860245577787887877888887667877652999999999878998896999685479999887
Q ss_pred -------------------------------------C
Q ss_conf -------------------------------------5
Q 000920 1082 -------------------------------------K 1082 (1223)
Q Consensus 1082 -------------------------------------~ 1082 (1223)
.
T Consensus 321 ~y~~~~~lgG~~~W~~~~D~g~ll~a~~~~l~~~~~~~ 358 (358)
T d1edqa2 321 KYVLDKQLGGLFSWEIDADNGDILNSMNASLGNSAGVQ 358 (358)
T ss_dssp HHHHHHTCCEEEEECGGGCCSHHHHHHHHHTTCCBSCC
T ss_pred HHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 78862897439887156786289999998647854679
|
| >d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: PDEase domain: Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=26867.46 Aligned_cols=1 Identities=0% Similarity=-1.057 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~w~Fd~f~l~~~~~~~~L~~~~~~if~~~~l~~~f~i~~~~l~~Fl~~v~~~Y~~~~nPYHN~ 80 (357)
T d1taza_ 1 VGPTYSTAVLNCLKNLDLWCFDVFSLNQAADDHALRTIVFELLTRHNLISRFKIPTVFLMSFLDALETGYGKYKNPYHNQ 80 (357)
T ss_dssp CCCCCCHHHHHHHTTTTSTTCCHHHHHHHTTSCHHHHHHHHHHHHTTHHHHTTCCHHHHHHHHHHHHHHHTTTCCSSSSH
T ss_pred CCCCCCHHHHHHHHCCCCCCCCCHHCCHHCCCCHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 99889899999986455699980130101389829999999999878376439899999999999998457789875359
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~HA~dV~q~~~~lL~~~~~~~~l~~~E~~alliAal~HD~~HpG~~N~flv~s~~~LA~lYnd~SvLEnhH~~~~~~lL~ 160 (357)
T d1taza_ 81 IHAADVTQTVHCFLLRTGMVHCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENHHISSVFRLMQ 160 (357)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHHTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999999999999635632338999999999999988248899635799863887888639987789999999999980
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~i~~~l~~~~~~~~r~~ii~~ILaTDm~~H~~~l~~~~~~~~~~~~~~r~~~~~~lik~ADis~~~rp~~~~~~W~ 240 (357)
T d1taza_ 161 DDEMNIFINLTKDEFVELRALVIEMVLATDMSCHFQQVKTMKTALQQLERIDKPKALSLLLHAADISHPTKQWLVHSRWT 240 (357)
T ss_dssp SGGGCTTTTSCHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTCGGGSCHHHHHHHH
T ss_pred CCCHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 61000103899899999999999998222267689999999999974114109999999998623554236779999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~l~~Ef~~Qgd~E~~~gl~~sp~~dr~~~~~~~~QigFi~~iv~Plf~~l~~~~p~~~~p~~~~~~~n~~~~~~~~~~~ 320 (357)
T d1taza_ 241 KALMEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFIVEPTFSVLTDVAEKSVQPLADEDSKSKNQPSFQWRQP 320 (357)
T ss_dssp HHHHHHHHHHHHHHHHHTCC------CCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998899845999987668754320788999999999999999998770653688899999999899987641
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------5
Q 000920 1082 ------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~en~~~~~~~~a~ 357 (357)
T d1taza_ 321 SLDVEVGDPNPDVVSFRSTWVKRIQENKQKWKERAAS 357 (357)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 2234557876234321314556545438999987439
|
| >d2qapa1 c.1.10.1 (A:1-357) Fructose-1,6-bisphosphate aldolase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=100.00 E-value=0 Score=26867.42 Aligned_cols=1 Identities=0% Similarity=-0.992 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~el~~~a~~~~~~GKGilAADeS~gT~~Krl~~iGventEenr~~~R~~l~tsp~~~~ 80 (357)
T d2qapa1 1 MSRVTVLQSQLPAYNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQ 80 (357)
T ss_dssp CCEEEEEGGGSGGGCSCCCTTHHHHHHHHHHHTCTTCEEEEECCCTTTHHHHHGGGTCCCCHHHHHHHHHHHHTCTTGGG
T ss_pred CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf 96121111037775445847899999999998079986998358998277789876999978999999998847987555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~IsGvILfeeTm~q~~~~g~~~~~ll~~kGIVPgIKVDkGl~~~~~G~~~ek~t~gLD~L~~R~~ey~~~Ga~faKwRsV 160 (357)
T d2qapa1 81 YISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVKRASAYYKKGCRFCKWRNV 160 (357)
T ss_dssp TEEEEEECHHHHTCBCTTSSBHHHHHHHTTCEEEEECCCCEEECSSSSTTCEEECCCTTHHHHHHHHHHTTCCEEEEEEE
T ss_pred CEEEEEECHHHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEECCCCHHC
T ss_conf 44689812898732302799779999847981544247751478789974642625677999877754233300310100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 i~i~~~~ps~~~I~~na~~laryA~i~q~~GLVPIVEPEVlidg~h~~e~~~~vte~vl~~~~~~l~~~~V~Leg~lLKp 240 (357)
T d2qapa1 161 YKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKP 240 (357)
T ss_dssp ECCBTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 43666775044466568999999999997497631051233224564688899999999999998875314445776543
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 nMv~~G~~~~~~~~~e~va~~tv~~l~~tvP~~VpgIvfLSGGqS~eeAt~~LnaiN~~~~~~pw~lsfSfsRALQ~s~L 320 (357)
T d2qapa1 241 NMVVPGAESGKTAAPEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSAL 320 (357)
T ss_dssp CCCCCCTTSSCCCCHHHHHHHHHHHHHHHSBTTCCEEEECCTTCCHHHHHHHHHHHTTCCSCCCSEEEEEESHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHH
T ss_conf 42224543345688556302356665214797787113147886789999999997424578998589863397608999
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------5
Q 000920 1082 ------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------~ 1082 (1223)
-
T Consensus 321 k~W~g~~env~~aQ~~~~~Ra~~ns~A~~G~y~~~~e 357 (357)
T d2qapa1 321 KAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDD 357 (357)
T ss_dssp HHHTTSGGGHHHHHHHHHHHHHHHHHHHTTCCCGGGC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9857974639999999999999868986688687789
|
| >d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: 3-isopropylmalate dehydrogenase, IPMDH species: Thiobacillus ferrooxidans [TaxId: 920]
Probab=100.00 E-value=0 Score=26864.98 Aligned_cols=1 Identities=100% Similarity=-0.095 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 M~kI~vipGDGIGpEV~~~~~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~dail~Gai~~p~~~~ 80 (357)
T d1a05a_ 1 MKKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDA 80 (357)
T ss_dssp CCEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTT
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 97899977678669999999999999987708985999997552425441994899999999973065406656887567
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~lR~~ldlyanvRP~k~~pg~~~~~pl~~~~~~~vD~vivREnteg~Y~g~~~~~~~~~~~~~a~~~~ 160 (357)
T d1a05a_ 81 YPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTM 160 (357)
T ss_dssp SCGGGSHHHHHHHHHHHHTCCEEEEEEECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEEEETTEEEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCEEEEEEE
T ss_conf 78555666477889975695588777640367666789886667761399987455643357753221267764899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~t~~~~~ri~~~Af~~a~~r~k~vt~v~K~ni~~~~~lf~~~~~eva~~yp~i~~~~~~vD~~~~~lv~~P~~fdViv~ 240 (357)
T d1a05a_ 161 VYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLETTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLT 240 (357)
T ss_dssp EEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCEEEC
T ss_conf 96289999999999988645786488885366411368999999999865898278751799999998745456567851
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~Nl~GDIlSDl~a~l~GglGl~ps~nig~~~a~fE~~HGsapdiaGk~~aNP~a~ils~ammL~~~lg~~~~A~~i~~Av 320 (357)
T d1a05a_ 241 GNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEPIHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRVEAAV 320 (357)
T ss_dssp CHHHHHHHHHHHHHTTSCGGGCEEEEECSSCEEEEESSCCCGGGTTTTCSCCHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 17888878899988735765410300068730102456878000589865949999999999972089879999999999
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------5
Q 000920 1082 ------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~i~~g~~T~Dlgg~~t~~~~T~e~~daV~~~l~~~ 357 (357)
T d1a05a_ 321 QRVLDQGLRTADIAAPGTPVIGTKAMGAAVVNALNLK 357 (357)
T ss_dssp HHHHHTTCCCGGGCCTTSCCCCHHHHHHHHHHTTTCC
T ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9999769967566999998768999999999987469
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=0 Score=26864.92 Aligned_cols=1 Identities=0% Similarity=0.404 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~f~~~~f~l~~G~~l~~~~laY~t~G~ln~~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyf 80 (357)
T d2b61a1 1 SVQNVVLFDTQPLTLMLGGKLSYINVAYQTYGTLNDEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYF 80 (357)
T ss_dssp CCEEEEESSSSCEECTTSCEECSEEEEEEEESCCCTTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCE
T ss_pred CCCEEEEEECCCEECCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEE
T ss_conf 97428998479825689986589569999623337889988998488776653335678887588712799766777518
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 VI~~n~lG~~~gSs~p~s~~p~tg~~~g~~FP~iti~D~v~aq~~Ll~~LGI~~l~~viG~SmGGmqAl~wa~~~Pd~v~ 160 (357)
T d2b61a1 81 FISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHLGISHLKAIIGGSFGGMQANQWAIDYPDFMD 160 (357)
T ss_dssp EEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHTTCCCEEEEEEETHHHHHHHHHHHHSTTSEE
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 99855667766667767889888997776422110689999999999871866488884040788899999874267774
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~i~i~~~a~~s~~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~~~~~~~~ 240 (357)
T d2b61a1 161 NIVNLCSSIYFSAEAIGFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWG 240 (357)
T ss_dssp EEEEESCCSSCCHHHHHHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTS
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCC
T ss_conf 33244456433235788878899999828777788755688830689999999886404789999874522234433236
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~vesyL~~~g~kf~~rfDan~yl~l~~a~~~~D~~~~~~~l~~aL~~I~a~vLvi~~~sD~lFpp~~~~~~a~~l~~ 320 (357)
T d2b61a1 241 DYFQVESYLSYQGKKFLERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQ 320 (357)
T ss_dssp CCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 53569999999889887607999999999986632654333338999862699889998477506598999999999986
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------5
Q 000920 1082 ------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~v~~~~I~S~~GHdafL~e~~~~~~~I~~fL~~~ 357 (357)
T d2b61a1 321 SGVDLHFYEFPSDYGHDAFLVDYDQFEKRIRDGLAGN 357 (357)
T ss_dssp TTCEEEEEEECCTTGGGHHHHCHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 6998699997999875554769899999999997359
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=100.00 E-value=0 Score=26863.65 Aligned_cols=1 Identities=0% Similarity=-0.028 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~p~~~~~~y~~~~G~tG~Gv~VaViDtGvd~~H~dl~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 80 (357)
T d1t1ga_ 1 AAPTAYTPLDVAQAYQFPEGLDGQGQCIAIIALGGGYDETSLAQYFASLGVSAPQVVSVSVDGATNQPTGDPNGPDGEVE 80 (357)
T ss_dssp CCCEEECHHHHHHHTTCCTTCCCTTCEEEEEESSCCCCHHHHHHHHHHTTCCCCCEEEEESTTCCCCCCSCTTSTHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 99874789999998787889898897899997688778688987775058878998633799999887876556443005
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~d~~~~~GvAp~A~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~ 160 (357)
T d1t1ga_ 81 LDIEVAGALAPGAKIAVYFAPNTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLA 160 (357)
T ss_dssp HHHHHHHHHSTTSEEEEEECCSSHHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 77643125414676998741247884589999998741149808965666576766543489998766532157867999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~p~~~~~~~~~~~~ 240 (357)
T d1t1ga_ 161 AAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASAGRIERETVWNDGPDGGSTGGGVSRIFPLPSWQERANVPPSA 240 (357)
T ss_dssp ECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECSSCEEEEEECBCHHHHCBCCCEECSSSCCCGGGTTSCCCCCS
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 84168743211344544201135776236654023678775445201266666433447744121367523354234556
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~pd~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g 320 (357)
T d1t1ga_ 241 NPGAGSGRGVPDVAGNADPATGYEVVIDGETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEG 320 (357)
T ss_dssp STTCCCCCEECSEEEECCTTEEEEEEETTEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSC
T ss_pred CCCCCCCCEECCEECCCCCCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEECCCCC
T ss_conf 67777773313321135787742774699666168831687999999999976405886765999986260133124326
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------5
Q 000920 1082 ------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~~~~~~~~~~a~~G~d~~tG~G~~n~~~~~~~l~p 357 (357)
T d1t1ga_ 321 NNDIANRARIYQAGPGWDPCTGLGSPIGIRLLQALLP 357 (357)
T ss_dssp BCCCSSSSCCSBCCSSSBTTTBTCEECHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 7788888776567668988846741549999874088
|
| >d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Plasmodium yoelii [TaxId: 5861]
Probab=100.00 E-value=0 Score=26863.17 Aligned_cols=1 Identities=0% Similarity=-1.357 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~lPK~eLH~HL~Gsi~~~~l~~la~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 80 (357)
T d2amxa1 1 EIKFLKKEDVQNIDLNGMSKKERYEIWRRIPKVELHCHLDLTFSAEFFLKWARKYNLQPNMSDDEILDHYLFTKEGKSLA 80 (357)
T ss_dssp SCCCCCHHHHTTCCGGGCCHHHHHHHHHHSCEEECCBBGGGCCCHHHHHHHHHHTTCCTTSCHHHHHHHHCCCSTTCCHH
T ss_pred CCCHHHHCCCCCCCHHCCCCHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHH
T ss_conf 93455522555687000470789999983908898667878999999999999729799999499999874567626599
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~f~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~v~y~Elr~~p~~~~~~~g~~~~~v~~~i~~g~~~a~~~~~~~~~~~ 160 (357)
T d2amxa1 81 EFIRKAISVSDLYRDYDFIEDLAKWAVIEKYKEGVVLMEFRYSPTFVSSSYGLDVELIHKAFIKGIKNATELLNNKIHVA 160 (357)
T ss_dssp HHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTSSEEE
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999878778733899999999999999998415161133454324545676457799999999999987439845898
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 l~~~~~~~~~~~~~~~~~~~a~~~~~~vvGidl~g~e~~~~~~~~~f~~ar~~gl~it~HaGE~~~~~~~~~i~~ai~~l 240 (357)
T d2amxa1 161 LICISDTGHAAASIKHSGDFAIKHKHDFVGFDHGGREIDLKDHKDVYHSVRDHGLHLTVHAGEDATLPNLNTLYTAINIL 240 (357)
T ss_dssp EEEECCCCCSHHHHHTTTHHHHHTTTTEEEEECCSSCCCCGGGHHHHHHHHHTTCEEEEEESCCTTCSSSHHHHHHHHTS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 63210266125557999999996388657312467766623469999999831876443455458999747899999704
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~RIgHGv~~~~d~~l~~~l~~~~I~leiCPtSN~~~~~~~~~~~HP~~~l~~~Gv~v~l~TDDp~~f~t~ls~ey~~~ 320 (357)
T d2amxa1 241 NVERIGHGIRVSESDELIELVKKKDILLEVCPISNLLLNNVKSMDTHPIRKLYDAGVKVSVNSDDPGMFLSNINDNYEKL 320 (357)
T ss_dssp CCSEEEECGGGGGCHHHHHHHHHHTCEEEECHHHHHHTTSSSCSTTCTHHHHHHTTCEEEECCBCHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHEECCHHHHHHHHHHCCEEEECCCCHHHHCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHCCCHHHHHHHH
T ss_conf 97313652430058788998887185389887500242358970028999999889959995899412178879999999
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------5
Q 000920 1082 ------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~ls~~el~~l~~nsi~~sF~~~~~K~~l~~~~~ 357 (357)
T d2amxa1 321 YIHLNFTLEEFMIMNNWAFEKSFVSDDVKSELKALYF 357 (357)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHC
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 9981989999999999999986899999999998659
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=100.00 E-value=0 Score=26861.31 Aligned_cols=1 Identities=0% Similarity=-0.526 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~g~~~~~~~f~w~~~~~~~~~~~~~i~~kl~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~ 80 (357)
T d1gcya2 1 DQAGKSPNAVRYHGGDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFW 80 (357)
T ss_dssp CCCCCCTTCCCCGGGCCCEEECCCTTHHHHSTTTHHHHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTC
T ss_pred CCCCCCCCCEEECCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCCCCCCCCH
T ss_conf 95556898605358987788624468788777747999999789999739999996947547866777777888788470
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~dy~vd~~~Gt~~df~~LV~~aH~~GI~VIlD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (357)
T d1gcya2 81 HDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPNDCDDGDRFIGGD 160 (357)
T ss_dssp SSSCSCSSSCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTCSSCSCCCCSSSSCBGGGSCCCSSSCBTTBSSCCSTTST
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 30656866799999999999999638737898700354788875100465688765456677778888878555445665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~dln~~np~v~~~~~~~~~~~~~~~giDGfR~Daa~~i~~~~~~~~~~~~~~~~~~~gE~~~~~~~~~~~~~~~~~~~~~ 240 (357)
T d1gcya2 161 ADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQ 240 (357)
T ss_dssp TBBCTTSHHHHHHHHHHHHHHHHHSCEEEEEESCGGGSCHHHHHHHHHHHCTTSEEEECCCCCGGGSCTTSGGGGSCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCHHHH
T ss_conf 54477987999999999998777528987999515308999999998501788234543225763011011210110456
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fl~NHD~~r~~~~~~~~~~~~~~~~~~~la~a 320 (357)
T d1gcya2 241 IIKDWSDRAKCPVFDFALKERMQNGSIADWKHGLNGNPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYA 320 (357)
T ss_dssp HHHHHHHHHTSCEECHHHHHHHHHSCGGGGGGSGGGCSSHHHHTTEEECSCCTTTSBCSSGGGBCCSSCCCGGGHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 66767640344310035554300456999999985076656645257740477755424457864334287999999999
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------5
Q 000920 1082 ------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------~ 1082 (1223)
.
T Consensus 321 lllt~pGiP~IyyGde~d~g~~d~i~~li~iRk~~~i 357 (357)
T d1gcya2 321 YILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGV 357 (357)
T ss_dssp HHHHSSSEEEEEHHHHHTSSCHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9995799127970785467886999999999976879
|
| >d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Heme-dependent peroxidases superfamily: Heme-dependent peroxidases family: CCP-like domain: Fungal peroxidase (ligninase) species: Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=100.00 E-value=0 Score=26860.85 Aligned_cols=1 Identities=0% Similarity=0.039 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 a~c~~g~~~~na~cc~~~~v~~dlq~~~~~~~c~~~A~~~lRL~FHDcfv~~~~~g~~~~gGcDgSill~~~~E~~~~~N 80 (357)
T d1yyda1 1 AVCPDGTRVSHAACCAFIPLAQDLQETIFQNECGEDAHEVIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSAN 80 (357)
T ss_dssp CBCTTSCBCSCGGGTTHHHHHHHHHHHTTTTSSSHHHHHHHHHHHHHHHCCCTTTCGGGCCSSSCHHHHSTTTGGGSGGG
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 92899753677435467999999999985587507899999999824105103567678999781302178644678665
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~Gld~i~~~~~~~~~~~~~VScADiialAardAV~~~~GGP~~~v~~GR~Da~~a~~~~~LP~p~~~~~~l~~~Fa~~~G 160 (357)
T d1yyda1 81 NGIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLIPEPQDSVTKILQRFEDAGG 160 (357)
T ss_dssp TTTHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHTSTTCCCCCCEECCCSCCCCCCTTCSCCTTCCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 88799999999999637998999999999999997306897204248888642234446789864569999999766512
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 lt~~dmVaLsGAHTIG~ah~~~~~~~~~~~~~tp~~fDn~~f~~ll~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~L~ 240 (357)
T d1yyda1 161 FTPFEVVSLLASHSVARADKVDQTIDAAPFDSTPFTFDTQVFLEVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQ 240 (357)
T ss_dssp CCHHHHHHHGGGGGGCEESSSSTTCSCEESSSCTTSCSSHHHHHHTBCCCBCSSCSCCTTEECBSCCCCBTTBCCCCEEH
T ss_pred CCHHHHHEEECCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 88377611323331000245677754333466656301799999986368988888887601377744440102466248
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 SD~~L~~D~~T~~~V~~yA~n~~~F~~~Fa~AmvKms~lG~~~~~l~dcs~v~p~~~~~~~~~~~~p~~~~~~d~~~~~~ 320 (357)
T d1yyda1 241 SDFALAHDPRTACIWQGFVNEQAFMAASFRAAMSKLAVLGHNRNSLIDCSDVVPVPKPATGQPAMFPASTGPQDLELSCP 320 (357)
T ss_dssp HHHHHHHSTTTHHHHHHTTTCHHHHHHHHHHHHHHHTTTTSCGGGSEECGGGSCCCCCCCCCCCCBCTTCCGGGBCCCCT
T ss_pred HHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 99988419889999999965999999999999999997699953144577657899887788876789998676553055
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------5
Q 000920 1082 ------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (357)
T d1yyda1 321 SERFPTLTTQPGASQSLIAHCPDGSMSCPGVQFNGPA 357 (357)
T ss_dssp TSCCCCCCBCSCSSCCCCCSSTTSCSCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8999887789985334457899877689756678999
|
| >d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Acid proteases superfamily: Acid proteases family: Pepsin-like domain: Pepsin species: Mucor pusillus [TaxId: 4840]
Probab=100.00 E-value=0 Score=26858.75 Aligned_cols=1 Identities=100% Similarity=2.364 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 ~~~~~~~~~~~~~~~Y~~~i~iGtP~Q~~~~ivDTGSs~~wv~~~~C~~~~~c~~~~~f~~~~SsT~~~~~~~~~~~y~~ 80 (357)
T d1mppa_ 1 GSVDTPGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGT 80 (357)
T ss_dssp CCEEEEEEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSS
T ss_pred CCCCCCCEECCCCCEEEEEEEECCCCEEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 95445525458798899999982899599999948975428714899998553589878874587622679445886588
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 g~~~G~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 160 (357)
T d1mppa_ 81 GGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLI 160 (357)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSS
T ss_pred CCEEEEEEEEECCCCCCEECCEEEEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 71789998350212660488688999994045423215655433211235545776422244688788789999861565
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~fs~~l~~~~~~G~l~~Gg~d~~~~~~~~~~~pi~~~~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~ilDSGts~~~ 240 (357)
T d1mppa_ 161 SSPVFSVYMNTNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAFTIDTGTNFFI 240 (357)
T ss_dssp SSSEEEEECCCSSSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTCCSEE
T ss_pred CCCEEEEEECCCCCCCEEECCCCCHHHCCCCEEEEEECCCCCCCEEEEEEEEEEEECCEEEEECCCCCCEEEECCCCCCC
T ss_conf 55169998336899963987531766727730578721477874368998706998875765328973148613674236
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 lp~~~~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~c~~~~~~~~ 320 (357)
T d1mppa_ 241 APSSFAEKVVKAALPDATESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDG 320 (357)
T ss_dssp EEHHHHHHHHHHHCTTCEEETTEEEEEHHHHTTCCCEEEEEEECTTCSSCEEEEEEEGGGGEEECSSSSCEEEESEEEES
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCCCCEEEEECHHHEEEEECCCCCEEEEEECCCC
T ss_conf 98999999999856775346885102420144568507999811565356679998659928996589988999984799
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------5
Q 000920 1082 ------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~ILG~~fl~~~yvvfD~~~~~iGfA~~~~~~~~~ 357 (357)
T d1mppa_ 321 GNQFIVGNLFLRFFVNVYDFGKNRIGFAPLASGYEND 357 (357)
T ss_dssp SSCCEEEHHHHTTEEEEEETTTTEEEEEEBCTTTCCC
T ss_pred CCCEEECHHHHCCEEEEEECCCCEEEEEECCCCCCCC
T ss_conf 9999945697397999998999999999998678998
|
| >d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Alkaline cellulase K catalytic domain species: Bacillus sp. [TaxId: 1409]
Probab=100.00 E-value=0 Score=26858.29 Aligned_cols=1 Identities=0% Similarity=-0.493 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~p~~a~~~~~l~~~G~~~l~d~~G~~v~lrGv~~~~~~w~~~~~~~~~~~~l~~~~G~N~VRlp~~~~~~~~ 80 (357)
T d1g01a_ 1 PAGMQAVKSPSEAGALQLVELNGQLTLAGEDGTPVQLRGMSTHGLQWFGEIVNENAFVALSNDWGSNMIRLAMYIGENGY 80 (357)
T ss_dssp CTTCTTCCCHHHHCSCEEEEETTEEEEECTTSCBCCCEEEEESCHHHHGGGCSHHHHHHHHTTSCCSEEEEEEESSSSST
T ss_pred CCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCEEEEEEEECCCCHHCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCC
T ss_conf 98544567965346788599738589999999999999885676200465568999999998649977988636557887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~ld~~V~~a~~~GiyVIlD~H~~~~~~~~~~~~~~~~~~W~~iA~ry~~~~~~~~v~~el~NEP~~~~~~~~ 160 (357)
T d1g01a_ 81 ATNPEVKDLVYEGIELAFEHDMYVIVDWHVHAPGDPRADVYSGAYDFFEEIADHYKDHPKNHYIIWELANEPSPNNNGGP 160 (357)
T ss_dssp TTCTTHHHHHHHHHHHHHHTTCEEEEEEECCSSSCTTSGGGTTHHHHHHHHHHHHTTCTTGGGEEEECCSCCCSCCTTSC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 44989999999999999978988998613268888880355666779999999975476237999987516353567654
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~IR~~~~~~iiv~~~~w~~~~~~~~~~~~~~~nvvys~H~Y~~~~~~~~~~~~~~~~~~ 240 (357)
T d1g01a_ 161 GLTNDEKGWEAVKEYAEPIVEMLREKGDNMILVGNPNWSQRPDLSADNPIDAENIMYSVHFYTGSHGASHIGYPEGTPSS 240 (357)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHTCHHHHHHSCCSSSSEEEEEEEETTTSCCCCCCCCTTCCGG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 56676136899999999999999853993499804876665200013557999779998872675677667777566447
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~g~Pv~vgEfG~~~~~~~~~~~~~~~~~~~~~~~~~~isw~~W~~~~~~~~~~~~~~~~~~~~~~~ 320 (357)
T d1g01a_ 241 ERSNVMANVRYALDNGVAVFATEWGTSQANGDGGPYFDEADVWLNFLNKHNISWANWSLTNKNEISGAFTPFELGRTDAT 320 (357)
T ss_dssp GCCCHHHHHHHHHHTTCCEEEEEEESSBTTTBSCCCHHHHHHHHHHHHHTTCCEEEEEECCSSSTTCSBCCCCTTSCCCC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78999999999997699889983377678887876789999999999974993589957588776433067665566754
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------5
Q 000920 1082 ------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~~~~~w~~~~l~~sG~~v~~~l~g~~~~~~~~~ 357 (357)
T d1g01a_ 321 DLDPGANQVWAPEELSLSGEYVRARIKGIEYTPIDRT 357 (357)
T ss_dssp CSSCCTTCCCCGGGBCHHHHHHHHHHHTCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 5566667888765615467999998536778885789
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=26857.74 Aligned_cols=1 Identities=0% Similarity=0.172 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (357)
T d1db3a_ 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (357)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCC
T ss_conf 98899968886899999999997869899997897555556688887403303897599982067979988887525987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~~P~~~Y~~sK 160 (357)
T d1db3a_ 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAK 160 (357)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHH
T ss_pred EEEEEECCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 89985203553446559999999999999999999998489988689999845651889888958999999988699999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~~~ 240 (357)
T d1db3a_ 161 LYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMML 240 (357)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCEEECCEEECHHHHHHHHHH
T ss_conf 99999999999996997899996454599877677714789999999838972699799980444443044878999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 320 (357)
T d1db3a_ 241 QQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLL 320 (357)
T ss_dssp SSSSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGGCCCCC-CCCC
T ss_pred HCCCCCEEEECCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 27899759978998164599999999983976321455331000233211222433566760376155357886446404
Q ss_pred ------------------------------------C
Q ss_conf ------------------------------------5
Q 000920 1082 ------------------------------------K 1082 (1223)
Q Consensus 1082 ------------------------------------~ 1082 (1223)
.
T Consensus 321 ~d~skakk~LGw~P~~sl~egI~~~I~~~l~~~kk~~ 357 (357)
T d1db3a_ 321 GDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHS 357 (357)
T ss_dssp BCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 4889999997998689899999999999999970129
|
| >d16vpa_ d.180.1.1 (A:) Conserved core of transcriptional regulatory protein vp16 {Herpes simplex virus type 1 [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Conserved core of transcriptional regulatory protein vp16 superfamily: Conserved core of transcriptional regulatory protein vp16 family: Conserved core of transcriptional regulatory protein vp16 domain: Conserved core of transcriptional regulatory protein vp16 species: Herpes simplex virus type 1 [TaxId: 10298]
Probab=100.00 E-value=0 Score=26796.77 Aligned_cols=1 Identities=0% Similarity=-0.559 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~r~psPp~~~sp~~Ly~rLl~eL~F~eGp~Lls~le~wNeDLFSclP~n~dLY~~~~~LSt~~~eVi~~~~~~~p~~~~i 80 (356)
T d16vpa_ 1 SRMPSPPMPVPPAALFNRLLDDLGFSAGPALCTMLDTWNEDLFSALPTNADLYRECKFLSTLPSDVVEWGDAYVPERTQI 80 (356)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHTCTTHHHHHHHHHHCCCCCSTTSCCCGGGGTTCGGGCSCHHHHHHHHHHCCCCCSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf 99998988789799999999873998517899999984205550377874676531055389899999876179987750
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 dL~ahG~~~~P~~Pa~~eeLP~Yv~avq~fF~sELrAREe~Y~~Ll~~YC~AL~~yLr~sa~~~~r~~~~~~~~~~~~~~ 160 (356)
T d16vpa_ 81 DIRAHGDVAFPTLPATRDGLGLYYEALSRFFHAELRAREESYRTVLANFCSALYRYLRASVRQLHRQAHMRGRDRDLGEM 160 (356)
T ss_dssp CTTCCCSSCCCCCCSSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 01478998899999882353899999999999999998999999999999999999999887751310344541679999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~rq~i~~rYYRE~arLArllylHLYls~tRevswrl~A~Q~~~q~vF~~L~y~W~q~RQf~ClFhPvlfnhGvV~leg~p 240 (356)
T d16vpa_ 161 LRATIADRYYRETARLARVLFLHLYLFLTREILWAAYAEQMMRPDLFDCLCCDLESWRQLAGLFQPFMFVNGALTVRGVP 240 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHTTEEEEESCSHHHHSSCCSCSBCCSEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCEEEEECCCEEEECCEEEECCCC
T ss_conf 99999999999999999999999999999999999999986132634605740113432367535335417635667987
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 L~a~~Lr~~Ny~R~eLGLPlvR~~lvEE~~~pL~~~P~fs~~~pRssGyl~~~IraKmeaYS~~hp~~~~~~~~dH~YaR 320 (356)
T d16vpa_ 241 IEARRLRELNHIREHLNLPLVRSAATEEPGAPLTTPPTLHGNQARASGYFMVLIRAKLDSYSSFTTSPSEAVMREHAYSR 320 (356)
T ss_dssp CCHHHHHHHHHHHHHTTCCCCBCTTTSCTTSCSCCCCCCCTTSCCHHHHHHHHHHHHHTSTTC-----------------
T ss_pred CCHHHHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 88899988889998718840110100468987425886556785305689999999864420368888875444576447
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------5
Q 000920 1082 -----------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~~nYGst~eaml~~~~~~~p~~~~~~~~r~~~~ 356 (356)
T d16vpa_ 321 APTKNNYGSTIEGLLDLPDDDAPEEAGLAAPRLSFL 356 (356)
T ss_dssp ----------------------------CCCEEEEC
T ss_pred CCCCCCCCCCHHHCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 888888773232101699999635532234321359
|
| >d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Uroporphyrinogen decarboxylase, UROD domain: Uroporphyrinogen decarboxylase, UROD species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=26790.74 Aligned_cols=1 Identities=0% Similarity=-1.225 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~ne~~l~al~g~~~dr~PVw~MrqAGRylpey~~~r~~~~f~e~~~~pe~~ae~tl~p~~~~~~DaaiifsDil~~ 80 (356)
T d1r3sa_ 1 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTLQPLRRFPLDAAIIFSGILVV 80 (356)
T ss_dssp CCCCSCCHHHHHHHTCCCSSCCBCCTTSSSTTSHHHHHHHHTSCHHHHHTCHHHHHHHHHHHHHHSCCSCEECCCCTTHH
T ss_pred CCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 99764489999975998999998888445425889999871289999855999999998448986795425622442101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~ealG~~v~f~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~l~~v~eai~~~~~~l~~~~pliGf~ggP~Tla~yli~~~~ 160 (356)
T d1r3sa_ 81 PQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGG 160 (356)
T ss_dssp HHHTTCCCEEETTTEEECSSCCCSGGGGGGSCCGGGHHHHTHHHHHHHHHHHHHHTTSSCEEEEEECHHHHHHHHHHSSC
T ss_pred HHHCCCEEEECCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHCCC
T ss_conf 34228635644889866776433202332101100002144899999999998735565663032031888999872134
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~pe~~~~ll~~lt~~~~~~~~~qi~aGad~i~ifDs~a~~l~~~~~~~~~~~~~~~i~~~i~~~~~~ 240 (356)
T d1r3sa_ 161 SSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLRE 240 (356)
T ss_dssp CSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 21378898876303577889999999988999999860566540203520121357888888899999999999875101
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~i~~~~~~~~~l~~~~~~g~d~is~D~~~~l~~~~~~~~~~i~lqGNldP~~L~~~~e~i~~~~~~~l~~~~~ 320 (356)
T d1r3sa_ 241 AGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLDPCALYASEEEIGQLVKQMLDDFGP 320 (356)
T ss_dssp TTCCCCCEEEEETTCGGGHHHHTTSSCSEEECCTTSCHHHHHHHHCSSSEEEEEECGGGGGSCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 24777302101044787888874248561254235799999998489832882888899859999999999999998189
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------5
Q 000920 1082 -----------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------~ 1082 (1223)
+
T Consensus 321 ~~~I~nlGhGI~p~tp~env~a~v~~vr~~~k~~~~ 356 (356)
T d1r3sa_ 321 HRYIANLGHGLYPDMDPEHVGAFVDAVHKHSRLLRQ 356 (356)
T ss_dssp SSEEEEESSCCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHCHHHCC
T ss_conf 994896999759899999999999999996887459
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=0 Score=26787.35 Aligned_cols=1 Identities=100% Similarity=-0.427 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~ 80 (356)
T d1rkxa_ 1 INNSFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQP 80 (356)
T ss_dssp CCHHHHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCHH
T ss_conf 97344188989997888779999999999779989999789986177776640146876998405685760023430202
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y~~~k 160 (356)
T d1rkxa_ 81 EIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSK 160 (356)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 44444421565653246775353322334035666643045543222222212234565433322234568988432432
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~a 240 (356)
T d1rkxa_ 161 GCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSG 240 (356)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCEETHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCHHCCCCCCEEEECCCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCH
T ss_conf 33204566776521342010355733774267776488855143799999999718996688621342122123342200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~~LGw~P~~~ 320 (356)
T d1rkxa_ 241 YLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRWN 320 (356)
T ss_dssp HHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCCCCCC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECHHHHHHHHCCCCCCC
T ss_conf 23455540345654444332222223322110245666787489862797179999875765686999999879986888
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------5
Q 000920 1082 -----------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------~ 1082 (1223)
+
T Consensus 321 l~egi~~ti~wyk~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
T d1rkxa_ 321 LNTTLEYIVGWHKNWLSGTDMHEYSITEINNYMNTK 356 (356)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 999999999999998748998998999999971589
|
| >d1w8oa3 b.68.1.1 (A:47-402) Micromonospora sialidase, N-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Sialidases family: Sialidases (neuraminidases) domain: Micromonospora sialidase, N-terminal domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=100.00 E-value=0 Score=26786.52 Aligned_cols=1 Identities=100% Similarity=1.833 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
|
T Consensus 1 ~~~~~~~~~~~~~g~~g~~~~RiPslv~~~~G~lla~~~~r~~~~~d~~~~~i~~~rS~D~G~TWs~~~~v~~~~~~~~~ 80 (356)
T d1w8oa3 1 GEPLYTEQDLAVNGREGFPNYRIPALTVTPDGDLLASYDGRPTGIGAPGPNSILQRRSTDGGRTWGEQQVVSAGQTTAPI 80 (356)
T ss_dssp CCCCEEEEEEEETTSTTCSCEEEEEEEECTTSCEEEEEEECTTSCSTTSCCEEEEEEESSTTSSCCCCEEEECCBCSSSC
T ss_pred CCCCCCEEECCCCCCCCCEEEEECEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCC
T ss_conf 99741200110057688383670789998999999999646489988887329999906899787788873238887764
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~v~~~~~g~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~~~~~~~~~~ 160 (356)
T d1w8oa3 81 KGFSDPSYLVDRETGTIFNFHVYSQRQGFAGSRPGTDPADPNVLHANVATSTDGGLTWSHRTITADITPDPGWRSRFAAS 160 (356)
T ss_dssp BEEEEEEEEECTTTCCEEEEEEEESSCCTTTCCSCCCTTCTTSCEEEEEEESSTTSSCEEEECGGGSCCSTTCCEEEECS
T ss_pred CCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 34466248996899839999964035774443336787787479999983687652104652056655434432123466
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 240 (356)
T d1w8oa3 161 GEGIQLRYGPHAGRLIQQYTIINAAGAFQAVSVYSDDHGRTWRAGEAVGVGMDENKTVELSDGRVLLNSRDSARSGYRKV 240 (356)
T ss_dssp EECEECCSSTTTTCEEEEEEEECTTSCEEEEEEEESSTTSSCEECCCBCSSCCSEEEEECTTSCEEEEECCTTCCSEEEE
T ss_pred CCCEEEEECCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEE
T ss_conf 32046000244664045553012236632577752688752001446675543316899257620255642555540577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~S~D~G~tw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~l~~~~S~D~G~tW~~~~~i~~~ 320 (356)
T d1w8oa3 241 AVSTDGGHSYGPVTIDRDLPDPTNNASIIRAFPDAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQTWPVSKVFQPG 320 (356)
T ss_dssp EEESSTTSCCCCCEEEEEEECSSCCCEEEESSTTCCTTCSGGGCEEEEEECCSSSSEEEEEEEESSTTSCCCEEEEEEEE
T ss_pred EEECCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCEECCCCCEECCC
T ss_conf 88426887543022014335788787326743665346789809999799998897316999990799155886081799
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------5
Q 000920 1082 -----------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~Ys~~~~~~dg~i~~~ye~g~~~~~~~~~l~~~~ 356 (356)
T d1w8oa3 321 SMSYSTLTALPDGTYGLLYEPGTGIRYANFNLAWLG 356 (356)
T ss_dssp ECCCEEEEECTTSCEEEEECCSSEEEEEEECHHHHT
T ss_pred CCCCCEEEECCCCEEEEEEECCCCCEEEEEEHHHCC
T ss_conf 976863689589989999988997389996289979
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=100.00 E-value=0 Score=26786.21 Aligned_cols=1 Identities=0% Similarity=-0.560 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~p~~~~~~~~~~~~~~~~~Rl~~R~LdLR~~~~~~ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~~~~ 80 (356)
T d1l0wa3 1 TPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLV 80 (356)
T ss_dssp CCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHH
T ss_conf 96962685445654456698887413365117887999999999999999999988898999898124677764432002
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~yL~~Spel~lk~ll~~g~~~Vf~i~~~FRaE~~~t~H~~EFtmLE~e~~~~~~~~~m~~~E~li~~v~~~ 160 (356)
T d1l0wa3 81 PYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFRE 160 (356)
T ss_dssp ECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22113201117772856777775232368679982123522268754045668877666788878999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~f~r~~~~~a~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~f~~~~p~~~~~~~~~~~~~~ 240 (356)
T d1l0wa3 161 ALGVELPLPFPRLSYEEAMERYGSDKPDLRREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVR 240 (356)
T ss_dssp HTCCCCCSSCCEEEHHHHHHHHSSSSCCCSCCSCCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCB
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHCCEEEEECCCCCCCHHHHCHHHCCCCCCE
T ss_conf 72877778977511776677870474767777566542036653113110012233437743687665100103888620
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 a~~FdL~~~G~ElanG~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~yl~a~~~G~PP~~G~glGldRLlm~l~g~~~Ird 320 (356)
T d1l0wa3 241 ALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIRE 320 (356)
T ss_dssp BSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGG
T ss_pred EEEEECCCCCEEEECCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHCCCCCHHH
T ss_conf 21230233878862107871748999999999767832357789999999667989962377709999999809995885
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------5
Q 000920 1082 -----------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------~ 1082 (1223)
.
T Consensus 321 vi~FPR~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
T d1l0wa3 321 VIAFPKNKEGKDPLTGAPSPVPEEQLRELGLMVVRP 356 (356)
T ss_dssp GSSSCCCTTSCBTTTTBSEECCHHHHHHHTEEECCC
T ss_pred EECCCCCCCCCCCCCCCCCCCCHHHHHHCCEEECCC
T ss_conf 346899999998667899989999998668462185
|
| >d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=100.00 E-value=0 Score=26785.84 Aligned_cols=1 Identities=0% Similarity=-2.022 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~w~~~~~g~ee~~~~~l~spp~g~~l~s~~gd~~gf~~~dl~~p~~~~~~p~~~~~~~id~a~~~p~~ivr~G~~~~ 80 (356)
T d2ebsa2 1 WAPSWYLQIDGIEENAILSLRSPKSGAALLSGIGNISGMKHDDLTKPQKMFGAPQFSNLDSIDAAGNFPNVVVRAGSSGH 80 (356)
T ss_dssp CCCCEEECCTTCBCCBEEEEECCSSSSSEEEEESSSBCBEESCTTSCCCBCCSSCCSEEEEEEECSSCTTCEEEEEECCC
T ss_pred CCCCCEECCCCEEHHHEEEEECCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHEEEHHHCCCEEEEEECCCC
T ss_conf 99854576578010000015758999810688864785597458887535268885640120104118956999967788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~StDgG~TW~~~~~~~~g~~~~~~~~g~ia~s~dg~~ivw~~~~~~~~~gv~~StD~G~TW~~~~~~~~~ 160 (356)
T d2ebsa2 81 EYDSACARGAYATDGGDAWTIFPTCPPGMNASHYQGSTIAVDASGSQIVWSTKLDEQASGPWYSHDYGKTWSVPAGDLKA 160 (356)
T ss_dssp CBTTBCTTEEEESSSSSSEEECSCCCTTCSTTCCSCCEEEECTTSCCEEEECCCTTCCSCCEEESSTTSCCBCCEESCCS
T ss_pred CCCCCCCCEEEEECCHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCEEEECCCCCCEEECCCCCCC
T ss_conf 78888872799840522442787688886566446646999458993078731467886449970797113876777888
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~i~~d~~~~~~~Ya~~~g~ly~StDgG~TW~~~~~~~~~~~~~~~~v~p~~~g~v~v~~~~~Gl~~StDgG~TWt~i 240 (356)
T d2ebsa2 161 QTANVLSDKVQDGTFYATDGGKFFVSTDGGKSYAAKGAGLVTGTSLMPAVNPWVAGDVWVPVPEGGLFHSTDFGASFTRV 240 (356)
T ss_dssp CCSCEEECSSSTTCEEEEETTEEEEESSTTSEEEECCBTCCCCCCCCCEECTTSTTCEEEEETTTEEEEESSTTSBCEEE
T ss_pred CCCEEEEECCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCEEEECCCCCEEEEC
T ss_conf 73189996767965785046319994787654532256775454036888741699502112445259922776348981
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~g~~~~~~~~GvyrS~D~G~TW~~Ind~~~~~g~~~~i~~Dp~~~grvYv 320 (356)
T d2ebsa2 241 GTANATLVSVGAPKSKSDGKKASAPSAVFIWGTDKPGSDIGLYRSDDNGSTWTRVNDQEHNYSGPTMIEADPKVYGRVYL 320 (356)
T ss_dssp SSCEEEEEEEEEEC---------CCEEEEEEEESSTTSCSEEEEESSTTSSCEECCCTTSCTTCEEEEEECTTSTTCEEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCEECCCCCCCCCCEEEEECCCCCCCEEEE
T ss_conf 47888764013333566454678875599999864798076999969997934995997777752289718976998999
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------5
Q 000920 1082 -----------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------~ 1082 (1223)
+
T Consensus 321 gT~GrGi~y~~~~~~~s~~~~~~~~~~~~~~~~~~~ 356 (356)
T d2ebsa2 321 GTNGRGIVYADLTNKKSNEEKSTAKCANGQKGTHCY 356 (356)
T ss_dssp EEBSSCEEEEECCC----CCCCEEEETTCCSSSCCC
T ss_pred EECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 968876799967788577887420127888887679
|
| >d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: Chelatase family: Ferrochelatase domain: Ferrochelatase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=26785.35 Aligned_cols=1 Identities=0% Similarity=0.072 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 k~~tgVLL~nlGtP~s~~~V~~yL~~fl~D~~vi~~p~~~~~~l~~~I~~~R~~k~a~~Y~~IgggSPL~~~t~~qa~~l 80 (356)
T d1lbqa_ 1 RSPTGIVLMNMGGPSKVEETYDFLYQLFADNDLIPISAKYQKTIAKYIAKFRTPKIEKQYREIGGGSPIRKWSEYQATEV 80 (356)
T ss_dssp CCCEEEEEEECCCCSSGGGHHHHHHHHTTCCSSSCCCSSSHHHHHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99659999878899986899999999758986446878899998656475687999999998189881089999989999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~L~~~~~~~~~~~V~~amry~~P~i~~~l~~l~~~G~~~ilvlPlyPqyS~sTt~s~~~~v~~~l~~~~~~~~~~~~~ 160 (356)
T d1lbqa_ 81 CKILDKTCPETAPHKPYVAFRYAKPLTAETYKQMLKDGVKKAVAFSQYPHFSYSTTGSSINELWRQIKALDSERSISWSV 160 (356)
T ss_dssp HHHHHHHCGGGCCEEEEEEESSSSSCHHHHHHHHHTTTCCEEEEEESCSSCCTTTHHHHHHHHHHHHHHHCTTCCSEEEE
T ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 98850233435772168873146320888999998579864378844234427888899999999988750102566426
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 I~~~~~~p~yI~a~a~~i~~~l~~~~~~~~~~~~LlfS~HgiP~~~~~~gdpY~~q~~~t~~~v~~~l~~~~~~~~~fQS 240 (356)
T d1lbqa_ 161 IDRWPTNEGLIKAFSENITKKLQEFPQPVRDKVVLLFSAHSLPMDVVNTGDAYPAEVAATVYNIMQKLKFKNPYRLVWQS 240 (356)
T ss_dssp ECCCTTCHHHHHHHHHHHHHHHHTSCSTTGGGCEEEEEEECCBHHHHTTTCSHHHHHHHHHHHHHHHTTTCSCEEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 44644312279999999999999767544567379995477653333327874689999999876430566645777640
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 r~g~~~WL~P~t~~~le~l~~g~k~v~v~p~gFvsD~lETL~Eidie~~~~~~gg~~f~~vp~lN~~p~fi~~La~lV~~ 320 (356)
T d1lbqa_ 241 QVGPKPWLGAQTAEIAEFLGPKVDGLMFIPIAFTSDHIETLHEIDLGVIGESEYKDKFKRCESLNGNQTFIEGMADLVKS 320 (356)
T ss_dssp CCSSSCBCSCBHHHHHHHHGGGCSCEEEECTTCSSCCHHHHTCCCCCCCTTCTTGGGEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 45677777875599999840489748998885242234449887777999971887499868998998999999999999
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------5
Q 000920 1082 -----------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------~ 1082 (1223)
-
T Consensus 321 ~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
T d1lbqa_ 321 HLQSNQLYSNQLPLDFALGKSNDPVKDLSLVFGNHE 356 (356)
T ss_dssp HHHHCCSSCTTHHHHHHHCCCSSCCSCHHHHSBCCC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 865685567446644334768871118698616899
|
| >d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Isocitrate/Isopropylmalate dehydrogenase-like superfamily: Isocitrate/Isopropylmalate dehydrogenase-like family: Dimeric isocitrate & isopropylmalate dehydrogenases domain: 3-isopropylmalate dehydrogenase, IPMDH species: Bacillus coagulans [TaxId: 1398]
Probab=100.00 E-value=0 Score=26784.95 Aligned_cols=1 Identities=0% Similarity=-0.892 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 m~~rI~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~et~e~i~~~dail~Gav~~p~~~ 80 (356)
T d1v53a1 1 MKMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRRSDAILLGAVGGPKWD 80 (356)
T ss_dssp CCEEEEEEEESTTHHHHHHHHHHHHHHHHTTSSCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 97079998878765999999999999998624997499999556899997499288999999986082799256798867
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~lR~~ldlyanvRPv~~~~gi~~~~p~~~~~~~~vD~vivREnteg~Y~g~~~~~~~~~~~~~~~~~ 160 (356)
T d1v53a1 81 HNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTL 160 (356)
T ss_dssp SSCGGGCHHHHHHHHHHHHTCCEEEEEEECCGGGTTTSSBCHHHHTTCEEEEEEECSSBTTTCSCEEEESSTTCEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCEECCCCCCCCCCCC
T ss_conf 78988583021689998708725566665430344579977667788239996046766065305330224652002200
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~t~~~~~ri~r~af~~A~~r~kkVt~v~K~nv~~~~~~~~~~~~eva~eyp~I~~~~~~vD~~~~~lv~~P~~fdViv~ 240 (356)
T d1v53a1 161 AYTREEIERIIEKAFQLAQIRRKKLASVDKANVLESSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVT 240 (356)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTCHHHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEE
T ss_pred EEEEEEEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHCCCCCCEEEC
T ss_conf 02321430034577767874598465775254102450586999999836898699998836678898722344664532
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~Nl~GDIlSDl~a~l~GglGl~~s~ni~~d~~a~fEp~HGsapdiaGk~~aNP~a~ils~ammL~~~lg~~~~A~~i~~A 320 (356)
T d1v53a1 241 ENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLSAALMLRYSFGLEKEAAAIEKA 320 (356)
T ss_dssp CHHHHHHHHHHHTTTTSCTTSCEEEEECSSSCEEEEESSCCCGGGTTSSCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 67888888899988736763111200268731463378887234448996592999999999998637987999999999
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------5
Q 000920 1082 -----------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------~ 1082 (1223)
-
T Consensus 321 v~~~l~~g~~T~Dl~~~~gg~~~T~e~~dav~~~L~ 356 (356)
T d1v53a1 321 VDDVLQDGYCTGDLQVANGKVVSTIELTDRLIEKLN 356 (356)
T ss_dssp HHHHHHTTEESSSSCCTTCEECCHHHHHHHHHHHCC
T ss_pred HHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHCC
T ss_conf 999998599473556679970379999999998429
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=26784.89 Aligned_cols=1 Identities=0% Similarity=-1.057 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~~~~~~~~~~~e~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~~~g~~~~~~~~~~~~ 80 (356)
T d1jnra2 1 VYYPKKYELYKADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTG 80 (356)
T ss_dssp CCCCSSCCCCCGGGSCEEEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSS
T ss_pred CCCCCCHHHHCCCCCCCEEEECCEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 97775033213556776687649899898889999999999978867697999967889997359877899974233323
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~Ds~e~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (356)
T d1jnra2 81 RSERQNTLEDYVRYVTLDMMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAA 160 (356)
T ss_dssp SBSCCCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHH
T ss_conf 56766899999999998606876188999988741123556876097742013323322333100246640788999998
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~i~~~~~~~~l~~~~~~~~~v~~~~~~~~~~G~~~~i~Ak~VILATGG~~~~~~~~~~~~~~~~~~~~~~~tG 240 (356)
T d1jnra2 161 KMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTWYAIFDTG 240 (356)
T ss_dssp HHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCCSCCSGGGGCCSSCTTCBS
T ss_pred HHHHCCEEEEEEEEEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86304517899999887653024665214568877404837984078799917875331357777644564447987577
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 dG~~ma~~aGa~l~~~~~~q~~p~~~~~~~~~~~~~~~~~~~~~~~gl~~~g~~~~~~g~rf~~~~~~~g~~a~~~~~~~ 320 (356)
T d1jnra2 241 SGYYMGLKAGAMLTQAGFWVCGPEDLMPEEYAKLFPLKYNRMTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAVRF 320 (356)
T ss_dssp HHHHHHHHHTCCEESCEECCCCCTTTCCHHHHTTCSSCCTTBCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 09999998534524787247616645782432456567664004352121420017766557355655412328999999
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------5
Q 000920 1082 -----------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------~ 1082 (1223)
.
T Consensus 321 i~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~ 356 (356)
T d1jnra2 321 ILEQKPNPEIDDAVVEELKKKAYAPMERFMQYKDLS 356 (356)
T ss_dssp HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 972899887788999999988776899998507999
|
| >d1vbga1 c.1.12.2 (A:521-876) Pyruvate phosphate dikinase, C-terminal domain {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate phosphate dikinase, C-terminal domain domain: Pyruvate phosphate dikinase, C-terminal domain species: Maize (Zea mays) [TaxId: 4577]
Probab=100.00 E-value=0 Score=26783.89 Aligned_cols=1 Identities=0% Similarity=-0.426 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~ad~~r~i~i~aNi~~~~e~~~a~~~gadGVGL~RtEflfl~~~~~~~~~~~~i~~p~~ee~~~~~~~~~~ 80 (356)
T d1vbga1 1 SGDLGTFMAWVDDVRKLKVLANADTPDDALTARNNGAQGIGLCRTEHMFFASDERIKAVRQMIMAPTLELRQQALDRLLP 80 (356)
T ss_dssp SCHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCCSEEEEEHHHHHTTCHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCEEEHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 93488999987537764899858999999999847997171777888741886304678987629999999999998788
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~q~~~y~~i~~~~~g~pvtiRtlD~~~dk~lp~~~~~~~~~~l~~~~g~dk~~~~~~~~~~~E~NP~LG~RGiR~~l~~p 160 (356)
T d1vbga1 81 YQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGNIEDIVSELCAETGANQEDALARIEKLSEVNPMLGFRGCRLGISYP 160 (356)
T ss_dssp HHHHHHHHHHHHTTTSEEEEECCCSCGGGGSCCSCHHHHHHHHHHHHCCCHHHHHHHHHHHCCSCGGGSSCTHHHHHHSH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHCEEEEECHHHH
T ss_conf 78999999999748996699984278776676630567999999871998024554321334688432020455010211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~f~~ql~Ail~A~~~~~~~~~~~~~~IMiPmV~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~iGiMiEvPsaal~~d~ 240 (356)
T d1vbga1 161 ELTEMQARAIFEAAIAMTNQGVQVFPEIMVPLVGTPQELGHQVTLIRQVAEKVFANVGKTIGYKVGTMIEIPRAALVADE 240 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCEEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEECSHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 21357899999898744545756536550058763999999998887757888873066667435552357289997999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~DF~SIGTNDLtQytla~DRdn~~~~~~~y~~~~~~~~dp~~pav~~~i~~lI~~a~~~~k~~~~~i~vsiCGE~a 320 (356)
T d1vbga1 241 IAEQAEFFSFGTNDLTQMTFGYSRDDVGKFIPVYLAQGILQHDPFEVLDQRGVGELVKFATERGRKARPNLKVGICGEHG 320 (356)
T ss_dssp HTTTCSEEEECHHHHHHHHHTCCTTTGGGTHHHHHHTTSCSSCTTTSCCTTTHHHHHHHHHHHHHHHSTTCEEEEESGGG
T ss_pred HHHEEEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 96567899953038999999861310000026888630122587547789999999999999988507999699706434
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------5
Q 000920 1082 -----------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------~ 1082 (1223)
.
T Consensus 321 sdp~~~~~L~~lGi~~iS~sp~~ip~~k~a~aq~~~ 356 (356)
T d1vbga1 321 GEPSSVAFFAKAGLDYVSCSPFRVPIARLAAAQVLV 356 (356)
T ss_dssp GSHHHHHHHHHTTCSEEEECGGGHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCC
T ss_conf 799999999987999899890778999999977509
|
| >d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase {Streptomyces plicatus [TaxId: 1922]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-N-acetylhexosaminidase catalytic domain domain: beta-N-acetylhexosaminidase species: Streptomyces plicatus [TaxId: 1922]
Probab=100.00 E-value=0 Score=26783.81 Aligned_cols=1 Identities=0% Similarity=-1.291 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 f~~RG~mlD~aR~f~~~~~i~~~id~ma~~K~N~lh~Hl~D~~~~r~e~~~~p~l~~~ga~~~~~~~~~~~yT~~di~~i 80 (356)
T d1jaka1 1 YAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGGGPGGYYTKAEYKEI 80 (356)
T ss_dssp CSEEEEEEECSSSCCCHHHHHHHHHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTTTSCCTTSSCCCCBCHHHHHHH
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEECCCCHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98438678767998599999999999998299079999864887610016873465436756667788885289999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 v~ya~~rgI~viPEid~PgH~~~~~~~~pel~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~v~~E~~~lfp~~~~Hi 160 (356)
T d1jaka1 81 VRYAASRHLEVVPEIDMPGHTNAALASYAELNCDGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHI 160 (356)
T ss_dssp HHHHHHTTCEEEEECCCSSSCHHHHHHCGGGSTTSCCCCCCCSCCCSCCCCCTTCHHHHHHHHHHHHHHHHTCCSSEEEC
T ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999729868644777304679987584002568998644466778865566856789999999999987515507986
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 GgDE~~~~~~~~~~~f~~~~~~~v~~~gk~~~~W~e~~~~~~~~~~vV~~W~~~~~~~~~~~~~~~~~~~G~~vI~s~~~ 240 (356)
T d1jaka1 161 GGDEAHSTPKADFVAFMKRVQPIVAKYGKTVVGWHQLAGAEPVEGALVQYWGLDRTGDAEKAEVAEAARNGTGLILSPAD 240 (356)
T ss_dssp CCCCCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGSCCCTTCEEEECCCTTSCHHHHHHHHHHHHTTCEEEECCTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEECCCC
T ss_conf 00244444078999999999999998599458740013678988867887730356763267999999809969977870
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~Yld~~~~~~~~~~~~w~~~~~~~~~y~~~P~~~~~~~~~~~ilG~e~~lWtE~i~~~~~~~~~~~PR~~AlAEr~Ws~ 320 (356)
T d1jaka1 241 RTYLDMKYTKDTPLGLSWAGYVEVQRSYDWDPAGYLPGAPADAVRGVEAPLWTETLSDPDQLDYMAFPRLPGVAELGWSP 320 (356)
T ss_dssp TTCTTBCSSTTCSSSBCTTCCCCHHHHHSCCGGGSSTTCCGGGEEEEEEEECCTTCCSHHHHHHHHTTHHHHHHHHHHSC
T ss_pred HHEECCCCCCCCCCCCCCCCEEEHHHEEECCCCCCCCCCCHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 12020366789987753345122311450366567874521056478855054777998999988775599999998688
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------5
Q 000920 1082 -----------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~d~~~f~~RL~~~~~~l~~~Gv~y~r~p~~pw~ 356 (356)
T d1jaka1 321 ASTHDWDTYKVRLAAQAPYWEAAGIDFYRSPQVPWT 356 (356)
T ss_dssp GGGCCHHHHHHHHHTTHHHHHHHTCCCCCCTTSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 867999999999999999999779980679999999
|
| >d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Type II chitinase domain: Chitinase B, catalytic domain species: Serratia marcescens [TaxId: 615]
Probab=100.00 E-value=0 Score=26782.66 Aligned_cols=1 Identities=0% Similarity=-0.725 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
-
T Consensus 1 ~~~~~~~yy~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lTHi~yaFa~i~~~g~~~~~~~~~~~~~~~~~~~~~~lK 80 (356)
T d1goia2 1 TRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALK 80 (356)
T ss_dssp CCCEEEEEEECCHHHHHTCCSSCTTTCSSCGGGSCHHHHHHCSEEEEEEEEECTTSSEECCTTCCHHHHHHHHHHHHHGG
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHCCEEEEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98579999867745767624467766776720088404752994999879977996488258765267788999999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~p~lKvllSiGGW~~s~~~~~~~~~fs~~~~~~~~R~~Fi~siv~~l~~ygfDGIDIDWE~P~~~~~~~~~~l~~el~ 160 (356)
T d1goia2 81 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQAAEVDGFIAALQEIR 160 (356)
T ss_dssp GGCTTCEEEEEEECHHHHSTTSTTHHHHHHHTSSHHHHHHHHHHHHHHHHHHTCSEEEEECSCCCHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 87889869999837767788765543067885899999999999999999829982446420135444455336899999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~d~~~l~~~vD~invMtYD~~g~w~~~tg~~spLy~~~~~p~~~~~ 240 (356)
T d1goia2 161 TLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNA 240 (356)
T ss_dssp HHHHHHHHHTTCTTSCCEEEEEEESSHHHHTTTGGGHHHHHTTCSEEEEECCCSSCTTSSSCCCTTCSSBCTTSCCBCCG
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCC
T ss_conf 98778888746545543058840577777752104799863215746787302367888887887745477889733212
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~vsydd~~Si~~K~~y~~~~~LgGv~iW~l~~Dd~ 320 (356)
T d1goia2 241 LREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFDDAESFKYKAKYIKQQQLGGVMFWHLGQDNR 320 (356)
T ss_dssp GGGSSCCCCHHHHHHHCCSSBCCCHHHHHHHHHTSTTCCGGGEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECGGGSCT
T ss_pred CCCCCCCCCHHHCCCCCCCCCCEECCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 55444566765456566887522225899977986599843405882149999999999999957998999981488899
Q ss_pred -----------------------------------C
Q ss_conf -----------------------------------5
Q 000920 1082 -----------------------------------K 1082 (1223)
Q Consensus 1082 -----------------------------------~ 1082 (1223)
-
T Consensus 321 ~gsLl~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (356)
T d1goia2 321 NGDLLAALDRYFNAADYDDSQLDMGTGLRYTGVGPG 356 (356)
T ss_dssp TCHHHHHHHHHHHCTTCCCTTCCCCSCBCCCCCCTT
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf 967999987762687899653506788154178999
|
| >d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: RmlC-like cupins family: Gentisate 1,2-dioxygenase-like domain: Gentisate 1,2-dioxygenase species: Silicibacter pomeroyi [TaxId: 89184]
Probab=100.00 E-value=0 Score=26712.72 Aligned_cols=1 Identities=0% Similarity=-0.460 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~plw~~~~~~~p~~p~~~~~p~~w~~~~~~~~l~~~~~~~~~~~~~rr~~~l~np~~~~~~~ 80 (355)
T d3bu7a1 1 RDTPELEAYYDDLAKIETGALWTVANDIEPWEPTPKSAPVHWKWSDLRREVLRAIDLVRPEDAGRRVVYLRNPQRKDVSA 80 (355)
T ss_dssp CCCHHHHHHHHHHHHTTCCCGGGSCGGGSCSSCCCSSCCCEECHHHHHHHHHHHHHHSCSSCSSCCCEECCCGGGGGGTC
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHCCCHHHCCEEEEEEECCCCCCCCC
T ss_conf 98578999999998768945110046778999998862216009999999998741168311770599960798778777
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~t~~l~~~~q~l~PGe~~~~HrH~~~~~~~vi~G~g~~t~v~ge~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~~l~~~D 160 (355)
T d3bu7a1 81 ACGWLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGHKVELGANDFVLTPNGTWHEHGILESGTECIWQDGLD 160 (355)
T ss_dssp SBTTBEEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTEEEEECTTCEEEECTTCCEEEEECTTCCCEEEEEEEC
T ss_pred CCCHHHHHEEEECCCCCCCCCCCCCCEEEEEEECCCEEEEECCEEEEEECCCEEEECCCCEEEEECCCCCCCEEEEEECC
T ss_conf 67204532076689983730115442048999898079989998877667999995899528622478997489998125
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~Pl~~~l~~~f~e~~p~~~~~~~~~~~~s~~~~~~~~~~p~~~~~~~~~sp~~~ypw~~~~~al~~~~~~~~~~~~~g~~ 240 (355)
T d3bu7a1 161 IPLTNCLEANFYEVHPNDYQTTDIPLNDSPLTYGGPALLPQLDKWDKPYSPLLKYSWEPTYEALLNYAKASDGSPYDGLI 240 (355)
T ss_dssp HHHHHHTTCCCEEECTTSSCCCCCCTTHHHHHHCSTTEEESSCCCCCSSCSCCEECHHHHHHHHHHHHTTCCCBTTTBEE
T ss_pred HHHHHHCCCEECCCCCHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEE
T ss_conf 67876326300125840014555787602455344565443456776668533366442167789898547888778559
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 l~y~nP~tg~~~~~ti~~~~~~l~pG~~~~~hrH~~~~v~~v~~G~g~~~i~g~~~~~~~GDv~~vP~~~~h~~~N~s~~ 320 (355)
T d3bu7a1 241 LRYTNPQTGGHPMLTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGGKRFDWSEHDIFCVPAWTWHEHCNTQER 320 (355)
T ss_dssp EEECCTTTSSCSSSSCEEEEEEECTTCBCCCEEESSCEEEEEEECCEEEEETTEEEEECTTCEEEECTTCCEEEEECCSS
T ss_pred EEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEECCEEEEEECCCEEEECCCCCEEEECCCCC
T ss_conf 99646655577752016789997899705883735707999997849999999998862899899499984785558998
Q ss_pred ----------------------------------C
Q ss_conf ----------------------------------5
Q 000920 1082 ----------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------~ 1082 (1223)
.
T Consensus 321 e~~~Lf~~~D~P~~~~Lg~~~e~~~~~~~~~q~~~ 355 (355)
T d3bu7a1 321 DDACLFSFNDFPVMEKLGFWAEQALEDNGGHQIVA 355 (355)
T ss_dssp CCEEEEEEESHHHHHHTTCCCEEECCSTTTCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 86899995475999876167775411047976569
|
| >d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and second domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FucI/AraA N-terminal and middle domains superfamily: FucI/AraA N-terminal and middle domains family: L-fucose isomerase, N-terminal and second domains domain: L-fucose isomerase, N-terminal and second domains species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=26712.07 Aligned_cols=1 Identities=0% Similarity=-1.125 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~~pkiGirp~~Dgr~~~~re~le~~t~~~ak~~a~~l~~~l~~~~g~~ve~V~~d~~i~~~~eA~~~aekf~~~~v 80 (355)
T d1fuia2 1 MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEKLRHACGAAVECVISDTCIAGMAEAAACEEKFSSQNV 80 (355)
T ss_dssp CCSCSCCEEEEEEBCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHCBCTTSCBCCEEECSSCBCSHHHHHHHHHHHHTTTE
T ss_pred CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 98678980677853356504432038999999999999999987412689976999467516886999999999866598
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 d~~i~v~p~w~~~~~~~~~~~~~p~~vw~fn~~erpG~vgl~a~~aa~~q~Gip~~~iyg~~vqd~~d~~~p~dv~ekll 160 (355)
T d1fuia2 81 GLTITVTPCWCYGSETIDMDPTRPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLL 160 (355)
T ss_dssp EEEEEEESSCCCHHHHSCCCSSSCEEEEECBCSSSBHHHHHHHHHHHHHHTTCCCEEEECSSCCCTTCCCCCHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 77999825546615545314799866882689999868999999999986598734760776668754226699999999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~faRAa~av~~Lrg~~ig~iG~~~mGm~~~~~d~~~l~~~fGi~ve~iDm~El~rr~e~~i~D~eEv~~Al~w~k~~~~~ 240 (355)
T d1fuia2 161 RFARAGLAVASMKGKSYLSLGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRIDQKIYDEAELEMALAWADKNFRY 240 (355)
T ss_dssp HHHHHHHHHHHHTTCEEEEESSCSTTCGGGSCCHHHHHHHHCCEEEEECTHHHHHHHHTTCSCHHHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999999998658927887785677441257999999983995278759999999974689999999999999973302
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 g~d~n~~~~~~~~~~~~e~~e~~vkm~~~~rdlm~~n~~l~~~~~~ee~~g~~aia~gfqgqr~wtd~~p~~d~~ea~LN 320 (355)
T d1fuia2 241 GEDENNKQYQRNAEQSRAVLRESLLMAMCIRDMMQGNSKLADIGRVEESLGYNAIAAGFQGQRHWTDQYPNGDTAEAILN 320 (355)
T ss_dssp CCCCSCGGGCCCHHHHHHHHHHHHHHHHHHHHHHHCCTHHHHTTCHHHHTCCCEEEEEECCTTTTTTTSCCSHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCCCCCEEEEECCCCHHHCCCCCCHHHHHHHC
T ss_conf 41357512477776759899999999999999985081034414157656888425531245202103655107899857
Q ss_pred ----------------------------------C
Q ss_conf ----------------------------------5
Q 000920 1082 ----------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------~ 1082 (1223)
.
T Consensus 321 s~~dwnG~rep~~~AtE~D~~~altMl~~~lLTgt 355 (355)
T d1fuia2 321 SSFDWNGVREPFVVATENDSLNGVAMLMGHQLTGT 355 (355)
T ss_dssp SSEETTEECCCCCEEETTCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 84444787686336633340108999999875089
|
| >d1luca_ c.1.16.1 (A:) Bacterial luciferase alpha chain, LuxA {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Bacterial luciferase-like family: Bacterial luciferase (alkanal monooxygenase) domain: Bacterial luciferase alpha chain, LuxA species: Vibrio harveyi [TaxId: 669]
Probab=100.00 E-value=0 Score=26711.31 Aligned_cols=1 Identities=0% Similarity=-0.660 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 M~fg~f~~~~~~~~~~~~~~~~~~~~~a~~ae~~Gf~~~~~~ehh~~~~~~~~~p~~~~a~~a~~T~~I~lgt~v~~~~~ 80 (355)
T d1luca_ 1 MKFGNFLLTYQPPELSQTEVMKRLVNLGKASEGCGFDTVWLLEHHFTEFGLLGNPYVAAAHLLGATETLNVGTAAIVLPT 80 (355)
T ss_dssp CEEEEEECCCCCTTCCHHHHHHHHHHHHHHTGGGTCSEEEECCCCSBTTBCCSCHHHHHHHHHHHCSSCEEEEEEEEGGG
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 91357668879999799999999999999999879989996235788877767999999999996791068542367887
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~P~~~A~~~atLd~ls~GR~~lGig~G~~~~~~~~~G~~~~~~~~~~~E~~~il~~l~~~~~~~~~G~~~~~~~~~~~P 160 (355)
T d1luca_ 81 AHPVRQAEDVNLLDQMSKGRFRFGICRGLYDKDFRVFGTDMDNSRALMDCWYDLMKEGFNEGYIAADNEHIKFPKIQLNP 160 (355)
T ss_dssp SCHHHHHHHHHHHHHHHTSCEEEEEECCCCHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHSEEEEESSSCEEEEEECSS
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 65999999998887626997146542034300343210121001101578888887520243322222344444322366
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~p~q~~~~Pi~~a~~sp~~~~~Aa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gr~~~~~~~~~~~~~~v~~~~e~A~ 240 (355)
T d1luca_ 161 SAYTQGGAPVYVVAESASTTEWAAERGLPMILSWIINTHEKKAQLDLYNEVATEHGYDVTKIDHCLSYITSVDHDSNRAK 240 (355)
T ss_dssp CCSSTTSSCEEECCCSHHHHHHHHHTTCCBEECSSSCHHHHHHHHHHHHHHHHHTTCCGGGCCCEEEEECEECSSHHHHH
T ss_pred CCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 43567888620120322789999985067644354203331127899999887622454333210010011467799999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGtpe~v~~~l~~~~e~~Gv 320 (355)
T d1luca_ 241 DICRNFLGHWYDSYVNATKIFDDSDQTKGYDFNKGQWRDFVLKGHKDTNRRIDYSYEINPVGTPEECIAIIQQDIDATGI 320 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----------------------------CCSGGGGGSSEESHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHCC
T ss_conf 99999999999986421013576132125421102344555403501678887427741564899999999999997599
Q ss_pred ----------------------------------C
Q ss_conf ----------------------------------5
Q 000920 1082 ----------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------~ 1082 (1223)
+
T Consensus 321 d~~~l~~~~~~~~~~~~~sl~lfae~V~P~lr~~~ 355 (355)
T d1luca_ 321 DNICCGFEANGSEEEIIASMKLFQSDVMPYLKEKQ 355 (355)
T ss_dssp CEEEEECGGGCSHHHHHHHHHHHHHHTGGGCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 97999788999999999999999984101124899
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=26710.76 Aligned_cols=1 Identities=0% Similarity=-2.022 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~IG~TPLv~l~~ls~~~G~~~~i~~K~E~~nptGSfKdRg 80 (355)
T d1jbqa_ 1 WIRPDAPSRCTWQLGRPASESPHHHTAPAKSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRI 80 (355)
T ss_dssp CCCTTSCCCCCCCTTSCGGGCCSCCCCCCCCCSEESSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHH
T ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCEECCCHHHHHCCCCEEEEEECCCCCCCCHHHHH
T ss_conf 98899998865548986888997666776556410318775489973788643277599977999977889755979999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 a~~~i~~a~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~ 160 (355)
T d1jbqa_ 81 SLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPES 160 (355)
T ss_dssp HHHHHHHHHHHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CC
T ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCEEEEECCCCCCHHHHH
T ss_conf 99999999972886667669972555400488999986257708996123168899999844976999216643101555
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep 240 (355)
T d1jbqa_ 161 HVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDP 240 (355)
T ss_dssp HHHHHHHHHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 34699999973356513444576532001005650034441389998568622587037788888752487536986325
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~gs~~~~~~~~~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~v~D~ea~~~~~~L~~~eGi~vepSsaa~laa~l~~~~ 320 (355)
T d1jbqa_ 241 EGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQ 320 (355)
T ss_dssp TTCSCSSSGGGGCCSCCCCSCCSCCCSSCCTTCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHH
T ss_conf 67720133333322334522355456620111100120220358989999999999998095982899999999999977
Q ss_pred ----------------------------------C
Q ss_conf ----------------------------------5
Q 000920 1082 ----------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------~ 1082 (1223)
.
T Consensus 321 ~~~~g~~VVvvlcd~G~kY~s~~~~d~~~~~~~~~ 355 (355)
T d1jbqa_ 321 ELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFL 355 (355)
T ss_dssp GCCTTCEEEEEECBBGGGGTTTTTCHHHHHHTTCC
T ss_pred HCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCCC
T ss_conf 60896989999777976235642689999877899
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=26708.24 Aligned_cols=1 Identities=0% Similarity=0.404 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~~~~~~~~~~~f~i~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~ 80 (355)
T d2b1pa1 1 NQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIS 80 (355)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred CCCEEEEECCCCEEECCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99879995894045337759988962175859999999999989999998823369799999999999998648987648
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~f~~~~~~~~~~~~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl 160 (355)
T d2b1pa1 81 LLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKI 160 (355)
T ss_dssp CSEEECSCCSTTTCCEEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEE
T ss_pred EEEEEECCCCCCCCCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 99897025643457626999841446778765038999999999999999998865221124567763211365443132
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~ 240 (355)
T d2b1pa1 161 LDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPE 240 (355)
T ss_dssp CCCCC---------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHH
T ss_pred ECHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHH
T ss_conf 01023211466655332214655558133147777877433356625789865989988897788999999720589879
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~Hpw~~~~~~~ 320 (355)
T d2b1pa1 241 FMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDP 320 (355)
T ss_dssp HHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGCCH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCCCCC
T ss_conf 99876566777764175435666421264333543210133379999999999876994579089999669420878881
Q ss_pred ----------------------------------C
Q ss_conf ----------------------------------5
Q 000920 1082 ----------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (355)
T d2b1pa1 321 AEVEAPPPQIYDKQLDEREHTIEEWKELIYKEVMN 355 (355)
T ss_dssp HHHTCCCC-------CCCCCCHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCC
T ss_conf 00458999877702332415999999999998629
|
| >d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine transglycosylase, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: tRNA-guanine transglycosylase family: tRNA-guanine transglycosylase domain: Archaeosine tRNA-guanine transglycosylase, N-terminal domain species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=26707.27 Aligned_cols=1 Identities=0% Similarity=0.039 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~m~~F~i~~~d~~AR~G~l~~~~g~i~TP~fmpv~t~~~v~~~p~~l~~~g~~iil~NtYhl~~~p~~~~~~~~gGLh~F 80 (355)
T d1iq8a1 1 KMLKFEIKARDGAGRIGKLEVNGKKIETPAIMPVVNPKQMVVEPKELEKMGFEIIITNSYIIYKDEELRRKALELGIHRM 80 (355)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTEEEEESEEEEBCCSSSCSSCHHHHHHTTCCEEEEEHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCCEEEEEECCEEEECCCEEEEECCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCCHHHH
T ss_conf 95689998611772248999699666089155654587401489999983899892111306789873443124770443
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~w~~~ilTDSGgfQv~sl~~~~~~~e~~i~~q~~lgsDI~m~lD~~~~~~~~~~~~~~s~~rt~~~~~~~~~~~~~~~~ 160 (355)
T d1iq8a1 81 LDYNGIIEVDSGSFQLMKYGSIEVSNREIIEFQHRIGVDIGTFLDIPTPPDAPREQAVKELEITLSRAREAEEIKEIPMN 160 (355)
T ss_dssp HTCCSEEEEECSTTHHHHSSCCSSCHHHHHHHHHHTTCSBBCCCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHCCSCBB
T ss_pred HCCCCCEECCCCCCEEECCCHHHHHHHHHHEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 02789623055663121120011244566201204576179840346787777999999999999988887653205642
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 givqGG~~~dLR~~sa~~l~~~~~dG~aiGG~~~~~~~~~~~~~~~~i~~~~~~Lp~~kPrylmGvG~P~di~~~v~~Gi 240 (355)
T d1iq8a1 161 ATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMALRPDRPVHLFGAGHPIVFALAVAMGV 240 (355)
T ss_dssp CCBCCTTCHHHHHHHHHHHHHSCCSBEEECSCHHHHHTTCHHHHHHHHHHHHHHSCTTSCEEETTCCCGGGHHHHHHTTC
T ss_pred CEECCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHCC
T ss_conf 00012257317699986654178103201166765204789999998864101486336444137887567999998558
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 D~FD~~~p~r~ar~g~~~t~~g~~~l~~~d~~pC~C~~C~~~srayl~HL~~~~e~~LltiHNl~~~~~l~~~iR~aI~~ 320 (355)
T d1iq8a1 241 DLFDSASYALYAKDDRYMTPEGTKRLDELDYFPCSCPVCSKYTPQELREMPKEERTRLLALHNLWVIKEEIKRVKQAIKE 320 (355)
T ss_dssp CEEEESHHHHHHHTTEEEETTEEEEGGGCSSCCCCSTTTTTCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 96520588887640332157885235411013457852140589999976346488999999999999999999999985
Q ss_pred ----------------------------------C
Q ss_conf ----------------------------------5
Q 000920 1082 ----------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------~ 1082 (1223)
-
T Consensus 321 g~f~~~~e~~~~~~p~~~~~~~~l~~~~~~~~~~~ 355 (355)
T d1iq8a1 321 GELWRLVDERARSHPKLYSAYKRLLEHYTFLEEFE 355 (355)
T ss_dssp TCHHHHHHHHHTTCHHHHHHHHHHHHCHHHHHHHS
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999869999999999998888875019
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=0 Score=26706.65 Aligned_cols=1 Identities=0% Similarity=-0.326 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
.
T Consensus 1 ~~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 1 DEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEE
T ss_conf 99717476589999999982664777671999999999499999899998569948999999996777642015899989
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT 160 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred EEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCC
T ss_conf 99999999798898058864031179873499933887157732798820454305788376677058740473069963
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 240 (355)
T d2bbkh_ 161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 240 (355)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred EEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCC
T ss_conf 69993899989998347873799962433300011061021538997388746998299996589907998445784412
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~ 320 (355)
T d2bbkh_ 241 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 320 (355)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEET
T ss_pred EEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEEEC
T ss_conf 68543303510899980799767887406871265179975999867888498996689987799992899969999978
Q ss_pred ----------------------------------C
Q ss_conf ----------------------------------5
Q 000920 1082 ----------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------~ 1082 (1223)
-
T Consensus 321 ~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 321 GDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355 (355)
T ss_dssp TTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCEEEECCCC
T ss_conf 99989999999998999992869796589969999
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=26706.65 Aligned_cols=1 Identities=0% Similarity=-1.690 Sum_probs=0.0
Q ss_pred C-------------------------------------------------------------------------------
Q ss_conf 7-------------------------------------------------------------------------------
Q 000920 1081 G------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1081 ~------------------------------------------------------------------------------- 1081 (1223)
=
T Consensus 1 ~~p~~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 1 FVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD 80 (355)
T ss_dssp CCCEEEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEE
T ss_pred CCCCCEEECCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCC
T ss_conf 98875888983788699999889999999189909999899993999997899988999986999999996452443211
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d1nexb2 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 160 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEEC
T ss_conf 11111111110011111111111112322045543888689998567730012465200010000011234012101100
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 240 (355)
T d1nexb2 161 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 240 (355)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred CCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCC
T ss_conf 22210000256334421144204443013110001100012332111111210021012456368763012211111111
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000920 1082 -------------------------------------------------------------------------------- 1081 (1223)
Q Consensus 1082 -------------------------------------------------------------------------------- 1081 (1223)
T Consensus 241 ~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~ 320 (355)
T d1nexb2 241 GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANI 320 (355)
T ss_dssp CCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCT
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEEECCEEEEEECCCCCEEEEEE
T ss_conf 11111111123210033320111111111111110001246882299998499989999809979999999997988884
Q ss_pred ----------------------------------C
Q ss_conf ----------------------------------5
Q 000920 1082 ----------------------------------K 1082 (1223)
Q Consensus 1082 ----------------------------------~ 1082 (1223)
-
T Consensus 321 ~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~dfs 355 (355)
T d1nexb2 321 LKDADQIWSVNFKGKTLVAAVEKDGQSFLEILDFS 355 (355)
T ss_dssp TTTCSEEEEEEEETTEEEEEEESSSCEEEEEEECC
T ss_pred CCCCCCEEEEEECCCEEEEEEECCCCEEEEEEECC
T ss_conf 58999899999839919999989890999999588
|