Citrus Sinensis ID: 001003

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190--
MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNSFVFVFLFSFLRSLFIIGNV
cccEEEEEcccccEEEEEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEcccccccccccccccccEEccccccccEEEEEEEEEEEEEEEEEEEEcccccccccccEEEEEEccccEEEEEEEcccccEEEEEEEEEcccccccccccccccccccEEEEcccccEEEEEEEccEEEEEEccccccccccccccccccccccccccccEEEEcccccccEEEEEEEEccccccEEEEEEEcccccccccEEcccEEEEEEEEEccccccccEEEEcccccccccEEEEEcccccEEEEEEccEEEEEccccccEEEccccccccccccccccEEEEEEEEEEEEEEEEccEEEEEEccccEEEEEEEEcccEEEEEEEEEEccccccccEEEEcccEEEEEEEEccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccEEEEEEEEccccccccccEEEccccccccccccccccccccEEEEcccccEEEEEEEccccccccccccccccccccccEEEEEEEccEEEEEEcccEEEEEEccccccccccEEEEEEccccEEEEEEcccEEEEEcccccEEEEccccccccccccccccEEEEEEcccEEEEEEEccEEEEEEEcccccEEEEEcccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEccccEEEEEEcccccccEEEEEccccccccccccccccccccccccccccccccccEEEEEEccccccccccEEEEEEEcccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccEEEEEcccccEEEEEEcccEEEEEccccccEEEEEEEEcccccccEEEEEccccEEEEEccccccccccccEEEEEcccccccEEEEcccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccEEEEEEEccccccEEEEEEEEEEcccccccccEEEEEEccccccccccccEEEEEEEEEEccccccccccccEEcccccccccccccEEEEEEccEEEEEEEEcccEEEEEccc
ccHHHHHHccccccHHHHHEEEEcccHHcccccccccccccccccccccccccccccEEEEEccEEEEEEEEEccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEEEcccccccccccEEEEEEcccEEEEEEEccccccEEEEEEEEcccccccccccccEEcccccEEEEcccccEEEEEEEccEEEEEEcccccHHHccccccHHcccccccEEccEEEEEHHHccccccEEHHHHccccccEEEEEEccccccccccEEccccEEEEEEEEEcccccccEEEEEcccccccccEEEccccccEEEEEEEcEEEEEEccccccEEEccccccccccccccccccEEEEEEEEEEEccccEEEEEEccccEEEEEEEEcccEEEEEEEEEccccccccEEEEEcccEEEEEEcccccEEEEEEcccccccccccHcHHcccccccccHcccccccccccccHccccccccHccccHcccccccccEEEEEEccccccccccHEEccccccHHHHHcccccccccEEEEccccccEEEEEEcccccccccccccccccccccEEEEEEEcccEEEEEEcccEEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEccccEccccccccHccccccccccEEEEEEEcccEEEEEEcccEEEEEEEcccccEEEEEcccccccccccEEEEEEEcccccccccccccHHHHHccccccccccccccccccccEEEEEEEccccEEEEcccccEEEEEEccccccccEEEcccccccccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEEEEcccEEEEEEEEcccccccccccccEEEEEEcccccEEEEcccccccccccccccccccccccccEEEEEEEccccccEEEEEcccccEEEEEEccccccccccccccEEEEEcccccccccEEEEEEcccEEEEEEccccccccccccEEEEEEccccccEEEEEccccEEEEEEEcccccccccEEEEcccHHcccHHccccccccccccccccccEEEEEEcccccccccEEEEEEEcccccEEEEEEEEEEEEcccccccEEEEEEEEcccccccccccEEEEEEEEEEcccccccccHHHHHHHHHHHHcccHHHHHHHcccccEEEEEHHHHHHHHEEccc
msfaaykmmhwptgiancgsgfithsradyvpqipliqteeldselpskrgigpvpnlVVTAANVIEIYVVRVQeegskesknsgeTKRRVLMDGISAASLELVCHYRLHGNVESLAILSqggadnsrrrDSIILAFEDAKisvlefddsihglritsmhcfespewlhlkrgresfargplvkvdpqgrcggvLVYGLQMIILKAsqggsglvgdedtfgsgggfsariESSHvinlrdldmkHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSIsttlkqhpliwsamnlphdaykllavpspiggvLVVGANTIHYHSQSASCALALNNYAVsldssqelprssfsVELDAAHATWLQNDVALLSTKTGDLVLLTVVYdgrvvqrldlsktnpsvltsdittIGNSLFFLGSRLGDSLLVQFtcgsgtsmlssglkeefgdieadapstkrlrrSSSDALQdmvngeelslygsasnntesAQKTFSFAVRDSlvnigplkdfsyglrinadasatgiskqsnyelvelpgckgiwtvyhkssrghnadssrmaayddEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGArildgsymtqdlsfgpsnsesgsgsenstVLSVSIAdpyvllgmsdgsirllvgdpstctvsvqtpaaiesskkpvssctlyhdkgpepwlrktstdawlstgvgeaidgadggpldqgdiysVVCYesgaleifdvpnfncvftvdkfvsgrtHIVDTYMREALKDSeteinssseegtgqgrkeNIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYlfegpentsksddpvstsrslsvsnvsasrlrnlrfsrtpldaytreetphgapcqritifknisghqgfflsgsrpcwcmVFRErlrvhpqlcdgsIVAFTVLHNVNCNHGFIYVTSQGILkicqlpsgstydnywpvqkviplkatphqityfaeknlyplivsvpvlkpLNQVLSLLIDqevghqidnhnlssvdlhrtytvEEYEVrilepdraggpwqtratipmqssenALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFstgrnadnpqnlvlsgsygplfssvQIDFASHFFAICSNSFVFVFLFSFLRSLFIIGNV
MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVrvqeegskesknsgetkrrVLMDGISAASLELVCHYRLHGNVESLAIlsqggadnsrRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFArgplvkvdpqgRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGrvvqrldlsktnpsvltsdITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKeefgdieadapstkrlrrsssDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADAsatgiskqsnyELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTiaagnlfgrrrVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQtpaaiesskkpvssCTLYHDkgpepwlrkTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMRealkdseteinssseegtgqgrkenIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPEntsksddpvstsrslsvsnvsasrlrnlrfsrtpldaytreetphgapCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGhqidnhnlssvdlhrtYTVEEYEVRilepdraggpwqtratipmqssenaLTVRVVTLFNtttkenetlLAIGTAYVQGEDVAARGRVLLFStgrnadnpqNLVLSGSYGPLFSSVQIDFASHFFAICSNSFVFVFLFSFLRSLFIIGNV
MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQeegskesknsgeTKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPsnsesgsgsensTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPvstsrslsvsnvsasrlrnLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNsfvfvflfsflrslfIIGNV
***AAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEE********RGIGPVPNLVVTAANVIEIYVVRV*****************VLMDGISAASLELVCHYRLHGNVESLAILSQGGA****RRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSL**********FSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSG*********************************************************TFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHK***********MAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMT********************VLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQ**************CTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMR****************************MKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFE************************************************GAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPM***ENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNSFVFVFLFSFLRSLFIIG**
**FAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEEL********GIGPVPNLVVTAANVIEIYVVRV*********************GISAASLELVCHYRLHGNVESLAILSQGGA**SRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEW*********FARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSG*****************IESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGT*********************KRLRRSSSDALQDMVNGEELS**************TFSFAVRDSLVNIGPLKDFSYGLR***************YELVELPGCKGIWTVYH***************YDDEYHAYLIISLEARTMVLETADL****TESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQT***IESSKKPVSSCTLYHDKGPEPWL****************************DIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYM*****************************MKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLF******************************************************RITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEV******************TVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNSFVFVFLFSFLRSLFIIGNV
MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQE************KRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADA************ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLS****************VLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPA*************LYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALK******************KENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGP*********************SASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNSFVFVFLFSFLRSLFIIGNV
*SFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEE*******************ISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTF**GGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGS************************RLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHKSS**************DEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSET*****SEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNSFVFVFLFSFLRSLFIIGNV
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MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNSFVFVFLFSFLRSLFIIGNV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1192 2.2.26 [Sep-21-2011]
Q9FGR0 1442 Cleavage and polyadenylat yes no 0.953 0.787 0.730 0.0
Q7XWP1 1441 Probable cleavage and pol yes no 0.940 0.777 0.600 0.0
Q9V726 1455 Cleavage and polyadenylat yes no 0.848 0.694 0.274 3e-99
Q9EPU4 1441 Cleavage and polyadenylat yes no 0.498 0.412 0.325 4e-82
Q10570 1443 Cleavage and polyadenylat yes no 0.495 0.409 0.323 3e-81
Q10569 1444 Cleavage and polyadenylat yes no 0.496 0.409 0.325 4e-81
Q7SEY2 1456 Protein cft-1 OS=Neurospo N/A no 0.802 0.657 0.229 4e-50
A8XPU7 1454 Probable cleavage and pol N/A no 0.415 0.340 0.260 2e-46
Q9N4C2 1454 Probable cleavage and pol yes no 0.423 0.347 0.275 1e-45
Q2TZ19 1393 Protein cft1 OS=Aspergill yes no 0.770 0.659 0.227 5e-38
>sp|Q9FGR0|CPSF1_ARATH Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2 Back     alignment and function desciption
 Score = 1759 bits (4556), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 858/1175 (73%), Positives = 994/1175 (84%), Gaps = 39/1175 (3%)

Query: 1    MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQT-EELDSELPS-KRGIGPVPNL 58
            MSFAAYKMMHWPTG+ NC SG+ITHS +D   QIP++   +++++E P+ KRGIGP+PN+
Sbjct: 1    MSFAAYKMMHWPTGVENCASGYITHSLSDSTLQIPIVSVHDDIEAEWPNPKRGIGPLPNV 60

Query: 59   VVTAANVIEIYVVRVQEEG-SKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLA 117
            V+TAAN++E+Y+VR QEEG ++E +N    KR  +MDG+   SLELVCHYRLHGNVES+A
Sbjct: 61   VITAANILEVYIVRAQEEGNTQELRNPKLAKRGGVMDGVYGVSLELVCHYRLHGNVESIA 120

Query: 118  ILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESF 177
            +L  GG ++S+ RDSIIL F DAKISVLEFDDSIH LR+TSMHCFE P+WLHLKRGRESF
Sbjct: 121  VLPMGGGNSSKGRDSIILTFRDAKISVLEFDDSIHSLRMTSMHCFEGPDWLHLKRGRESF 180

Query: 178  ARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVIN 237
             RGPLVKVDPQGRCGGVLVYGLQMIILK SQ GSGLVGD+D F SGG  SAR+ESS++IN
Sbjct: 181  PRGPLVKVDPQGRCGGVLVYGLQMIILKTSQVGSGLVGDDDAFSSGGTVSARVESSYIIN 240

Query: 238  LRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPL 297
            LRDL+MKHVKDF+F+HGYIEPV+VIL E E TWAGRVSWKHHTC++SALSI++TLKQHP+
Sbjct: 241  LRDLEMKHVKDFVFLHGYIEPVIVILQEEEHTWAGRVSWKHHTCVLSALSINSTLKQHPV 300

Query: 298  IWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPR 357
            IWSA+NLPHDAYKLLAVPSPIGGVLV+ ANTIHYHSQSASCALALNNYA S DSSQELP 
Sbjct: 301  IWSAINLPHDAYKLLAVPSPIGGVLVLCANTIHYHSQSASCALALNNYASSADSSQELPA 360

Query: 358  SSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITT 417
            S+FSVELDAAH TW+ NDVALLSTK+G+L+LLT++YDGR VQRLDLSK+  SVL SDIT+
Sbjct: 361  SNFSVELDAAHGTWISNDVALLSTKSGELLLLTLIYDGRAVQRLDLSKSKASVLASDITS 420

Query: 418  IGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQD 477
            +GNSLFFLGSRLGDSLLVQF+C SG +    GL++E  DIE +    KRLR  +SD  QD
Sbjct: 421  VGNSLFFLGSRLGDSLLVQFSCRSGPAASLPGLRDEDEDIEGEGHQAKRLRM-TSDTFQD 479

Query: 478  MVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQS 537
             +  EELSL+GS  NN++SAQK+FSFAVRDSLVN+GP+KDF+YGLRINADA+ATG+SKQS
Sbjct: 480  TIGNEELSLFGSTPNNSDSAQKSFSFAVRDSLVNVGPVKDFAYGLRINADANATGVSKQS 539

Query: 538  NYEL--------------------------VELPGCKGIWTVYHKSSRGHNADSSRMAAY 571
            NYEL                          VELPGCKGIWTVYHKSSRGHNADSS+MAA 
Sbjct: 540  NYELVCCSGHGKNGALCVLRQSIRPEMITEVELPGCKGIWTVYHKSSRGHNADSSKMAAD 599

Query: 572  DDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGA 631
            +DEYHAYLIISLEARTMVLETADLLTEVTESVDY+VQGRTIAAGNLFGRRRVIQVFE GA
Sbjct: 600  EDEYHAYLIISLEARTMVLETADLLTEVTESVDYYVQGRTIAAGNLFGRRRVIQVFEHGA 659

Query: 632  RILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCT 691
            RILDGS+M Q+LSFG SNSES SGSE+STV SVSIADPYVLL M+D SIRLLVGDPSTCT
Sbjct: 660  RILDGSFMNQELSFGASNSESNSGSESSTVSSVSIADPYVLLRMTDDSIRLLVGDPSTCT 719

Query: 692  VSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGD 751
            VS+ +P+ +E SK+ +S+CTLYHDKGPEPWLRK STDAWLS+GVGEA+D  DGGP DQGD
Sbjct: 720  VSISSPSVLEGSKRKISACTLYHDKGPEPWLRKASTDAWLSSGVGEAVDSVDGGPQDQGD 779

Query: 752  IYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGT 811
            IY VVCYESGALEIFDVP+FNCVF+VDKF SGR H+ D  + E     E E+N +SE+ T
Sbjct: 780  IYCVVCYESGALEIFDVPSFNCVFSVDKFASGRRHLSDMPIHEL----EYELNKNSEDNT 835

Query: 812  GQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPV 871
                 + I + +VVELAMQRWS HH+RPFLFA+L DGTILCY AYLF+G ++T K+++ +
Sbjct: 836  S---SKEIKNTRVVELAMQRWSGHHTRPFLFAVLADGTILCYHAYLFDGVDST-KAENSL 891

Query: 872  STSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGS 931
            S+    ++++  +S+LRNL+F R PLD  TRE T  G   QRIT+FKNISGHQGFFLSGS
Sbjct: 892  SSENPAALNSSGSSKLRNLKFLRIPLDTSTREGTSDGVASQRITMFKNISGHQGFFLSGS 951

Query: 932  RPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDN 991
            RP WCM+FRERLR H QLCDGSI AFTVLHNVNCNHGFIYVT+QG+LKICQLPS S YDN
Sbjct: 952  RPGWCMLFRERLRFHSQLCDGSIAAFTVLHNVNCNHGFIYVTAQGVLKICQLPSASIYDN 1011

Query: 992  YWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLS 1051
            YWPVQK IPLKATPHQ+TY+AEKNLYPLIVS PV KPLNQVLS L+DQE G Q+DNHN+S
Sbjct: 1012 YWPVQK-IPLKATPHQVTYYAEKNLYPLIVSYPVSKPLNQVLSSLVDQEAGQQLDNHNMS 1070

Query: 1052 SVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETL 1111
            S DL RTYTVEE+E++ILEP+R+GGPW+T+A IPMQ+SE+ALTVRVVTL N +T ENETL
Sbjct: 1071 SDDLQRTYTVEEFEIQILEPERSGGPWETKAKIPMQTSEHALTVRVVTLLNASTGENETL 1130

Query: 1112 LAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLV 1146
            LA+GTAYVQGEDVAARGRVLLFS G+N DN QN+V
Sbjct: 1131 LAVGTAYVQGEDVAARGRVLLFSFGKNGDNSQNVV 1165
CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction.
Arabidopsis thaliana (taxid: 3702)
>sp|Q7XWP1|CPSF1_ORYSJ Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sativa subsp. japonica GN=Os04g0252200 PE=3 SV=2 Back     alignment and function description
>sp|Q9V726|CPSF1_DROME Cleavage and polyadenylation specificity factor subunit 1 OS=Drosophila melanogaster GN=Cpsf160 PE=1 SV=1 Back     alignment and function description
>sp|Q9EPU4|CPSF1_MOUSE Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus GN=Cpsf1 PE=1 SV=1 Back     alignment and function description
>sp|Q10570|CPSF1_HUMAN Cleavage and polyadenylation specificity factor subunit 1 OS=Homo sapiens GN=CPSF1 PE=1 SV=2 Back     alignment and function description
>sp|Q10569|CPSF1_BOVIN Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus GN=CPSF1 PE=1 SV=1 Back     alignment and function description
>sp|Q7SEY2|CFT1_NEUCR Protein cft-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cft-1 PE=3 SV=2 Back     alignment and function description
>sp|A8XPU7|CPSF1_CAEBR Probable cleavage and polyadenylation specificity factor subunit 1 OS=Caenorhabditis briggsae GN=cpsf-1 PE=3 SV=1 Back     alignment and function description
>sp|Q9N4C2|CPSF1_CAEEL Probable cleavage and polyadenylation specificity factor subunit 1 OS=Caenorhabditis elegans GN=cpsf-1 PE=3 SV=2 Back     alignment and function description
>sp|Q2TZ19|CFT1_ASPOR Protein cft1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=cft1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1192
225455571 1442 PREDICTED: cleavage and polyadenylation 0.947 0.783 0.769 0.0
296084122 1448 unnamed protein product [Vitis vinifera] 0.947 0.780 0.765 0.0
255539681 1461 cleavage and polyadenylation specificity 0.960 0.783 0.775 0.0
356559917 1447 PREDICTED: cleavage and polyadenylation 0.951 0.783 0.754 0.0
356530945 1449 PREDICTED: cleavage and polyadenylation 0.952 0.783 0.754 0.0
224120960 1455 predicted protein [Populus trichocarpa] 0.951 0.779 0.755 0.0
30696088 1442 cleavage and polyadenylation specificity 0.953 0.787 0.730 0.0
24415580 1442 putative cleavage and polyadenylation sp 0.953 0.787 0.729 0.0
297792471 1444 hypothetical protein ARALYDRAFT_495232 [ 0.954 0.788 0.731 0.0
10257491 1448 cleavage and polyadenylation specificity 0.953 0.784 0.726 0.0
>gi|225455571|ref|XP_002268371.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1883 bits (4879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 902/1172 (76%), Positives = 1008/1172 (86%), Gaps = 42/1172 (3%)

Query: 1    MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVV 60
            MS+AAYKMMHWPTGI NC SGF+THSRAD+ PQI  IQT++L+SE P+KR IGP+PNL+V
Sbjct: 1    MSYAAYKMMHWPTGIENCASGFVTHSRADFAPQIAPIQTDDLESEWPTKRQIGPLPNLIV 60

Query: 61   TAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILS 120
            TAAN++E+Y+VRVQE+ S+ES+ S ETKR  +M GIS A+LELVC YRLHGNVE++ +L 
Sbjct: 61   TAANILEVYMVRVQEDDSRESRASAETKRGGVMAGISGAALELVCQYRLHGNVETMTVLP 120

Query: 121  QGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARG 180
             GG DNSRRRDSIILAF+DAKISVLEFDDSIHGLR +SMHCFE PEW HLKRG ESFARG
Sbjct: 121  SGGGDNSRRRDSIILAFQDAKISVLEFDDSIHGLRTSSMHCFEGPEWFHLKRGHESFARG 180

Query: 181  PLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRD 240
            PLVKVDPQGRC GVLVYGLQMIILKASQ G GLVGDE+   SG   SAR+ESS+VI+LRD
Sbjct: 181  PLVKVDPQGRCSGVLVYGLQMIILKASQAGYGLVGDEEALSSGSAVSARVESSYVISLRD 240

Query: 241  LDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWS 300
            LDMKHVKDF FVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWS
Sbjct: 241  LDMKHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWS 300

Query: 301  AMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSF 360
            A+NLPHDAYKLL VPSPIGGV+V+ AN+IHYHSQSASCALALNNYAVS D+SQE+PRSSF
Sbjct: 301  AVNLPHDAYKLLPVPSPIGGVVVISANSIHYHSQSASCALALNNYAVSADNSQEMPRSSF 360

Query: 361  SVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGN 420
            SVELDAA+ATWL NDVA+LSTKTG+L+LLT+ YDGRVV RLDLSK+  SVLTS I  IGN
Sbjct: 361  SVELDAANATWLSNDVAMLSTKTGELLLLTLAYDGRVVHRLDLSKSRASVLTSGIAAIGN 420

Query: 421  SLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVN 480
            SLFFLGSRLGDSLLVQF     TS+LSS +KEE GDIE D PS KRLR+SSSDALQDMVN
Sbjct: 421  SLFFLGSRLGDSLLVQF-----TSILSSSVKEEVGDIEGDVPSAKRLRKSSSDALQDMVN 475

Query: 481  GEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYE 540
            GEELSLYGSA N+TE++QKTFSF+VRDS +N+GPLKDF+YGLRINAD  ATGI+KQSNYE
Sbjct: 476  GEELSLYGSAPNSTETSQKTFSFSVRDSFINVGPLKDFAYGLRINADPKATGIAKQSNYE 535

Query: 541  L--------------------------VELPGCKGIWTVYHKSSRGHNADSSRMAAYDDE 574
            L                          VELPGCKGIWTVYHK++RGHNADS++MA  DDE
Sbjct: 536  LVCCSGHGKNGALCILQQSIRPEMITEVELPGCKGIWTVYHKNTRGHNADSTKMATKDDE 595

Query: 575  YHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARIL 634
            YHAYLIISLE+RTMVLETADLL EVTESVDY+VQG TI+AGNLFGRRRV+QV+ RGARIL
Sbjct: 596  YHAYLIISLESRTMVLETADLLGEVTESVDYYVQGCTISAGNLFGRRRVVQVYARGARIL 655

Query: 635  DGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSV 694
            DG++MTQDL            SE+STVLSVSIADPYVLL MSDG+I+LLVGDPSTCTVS+
Sbjct: 656  DGAFMTQDLPI----------SESSTVLSVSIADPYVLLRMSDGNIQLLVGDPSTCTVSI 705

Query: 695  QTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYS 754
              PA  ESSKK +S+CTLYHDKGPEPWLRKTSTDAWLSTG+GEAIDGADG   DQGDIY 
Sbjct: 706  NIPAVFESSKKSISACTLYHDKGPEPWLRKTSTDAWLSTGIGEAIDGADGAAQDQGDIYC 765

Query: 755  VVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQG 814
            VV YESG LEIFDVPNFNCVF+VDKF+SG  H+VDT + E  +D++  ++ +SEE   QG
Sbjct: 766  VVSYESGDLEIFDVPNFNCVFSVDKFMSGNAHLVDTLILEPSEDTQKVMSKNSEEEADQG 825

Query: 815  RKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTS 874
            RKEN H++KVVELAMQRWS  HSRPFLF ILTDGTILCY AYL+EGPE+T K+++ VS  
Sbjct: 826  RKENAHNIKVVELAMQRWSGQHSRPFLFGILTDGTILCYHAYLYEGPESTPKTEEAVSAQ 885

Query: 875  RSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPC 934
             SLS+SNVSASRLRNLRF R PLD YTREE   G    R+T+FKNI G QG FLSGSRP 
Sbjct: 886  NSLSISNVSASRLRNLRFVRVPLDTYTREEALSGTTSPRMTVFKNIGGCQGLFLSGSRPL 945

Query: 935  WCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWP 994
            W MVFRER+RVHPQLCDGSIVAFTVLHN+NCNHG IYVTSQG LKICQLP+ S+YDNYWP
Sbjct: 946  WFMVFRERIRVHPQLCDGSIVAFTVLHNINCNHGLIYVTSQGFLKICQLPAVSSYDNYWP 1005

Query: 995  VQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVD 1054
            VQK IPLK TPHQ+TYFAEKNLYPLIVSVPVLKPLN VLS L+DQE GHQ++N NLSS +
Sbjct: 1006 VQK-IPLKGTPHQVTYFAEKNLYPLIVSVPVLKPLNHVLSSLVDQEAGHQLENDNLSSDE 1064

Query: 1055 LHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAI 1114
            LHR+Y+V+E+EVR+LEP+++G PWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAI
Sbjct: 1065 LHRSYSVDEFEVRVLEPEKSGAPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAI 1124

Query: 1115 GTAYVQGEDVAARGRVLLFSTGRNADNPQNLV 1146
            GTAYVQGEDVAARGRVLLFS G+N DN QNLV
Sbjct: 1125 GTAYVQGEDVAARGRVLLFSVGKNTDNSQNLV 1156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296084122|emb|CBI24510.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539681|ref|XP_002510905.1| cleavage and polyadenylation specificity factor cpsf, putative [Ricinus communis] gi|223550020|gb|EEF51507.1| cleavage and polyadenylation specificity factor cpsf, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356559917|ref|XP_003548242.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356530945|ref|XP_003534039.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Glycine max] Back     alignment and taxonomy information
>gi|224120960|ref|XP_002318462.1| predicted protein [Populus trichocarpa] gi|222859135|gb|EEE96682.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|30696088|ref|NP_199979.2| cleavage and polyadenylation specificity factor subunit 1 [Arabidopsis thaliana] gi|290457637|sp|Q9FGR0.2|CPSF1_ARATH RecName: Full=Cleavage and polyadenylation specificity factor subunit 1; AltName: Full=Cleavage and polyadenylation specificity factor 160 kDa subunit; Short=AtCPSF160; Short=CPSF 160 kDa subunit gi|332008729|gb|AED96112.1| cleavage and polyadenylation specificity factor subunit 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|24415580|gb|AAN41460.1| putative cleavage and polyadenylation specificity factor 160 kDa subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297792471|ref|XP_002864120.1| hypothetical protein ARALYDRAFT_495232 [Arabidopsis lyrata subsp. lyrata] gi|297309955|gb|EFH40379.1| hypothetical protein ARALYDRAFT_495232 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|10257491|dbj|BAB11613.1| cleavage and polyadenylation specificity factor subunit [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1192
TAIR|locus:2153122 1442 CPSF160 "cleavage and polyaden 0.5 0.413 0.735 0.0
ZFIN|ZDB-GENE-040709-2 1451 cpsf1 "cleavage and polyadenyl 0.370 0.304 0.353 1.3e-105
UNIPROTKB|F1PC28 1398 CPSF1 "Uncharacterized protein 0.339 0.289 0.366 7.4e-104
UNIPROTKB|Q10569 1444 CPSF1 "Cleavage and polyadenyl 0.373 0.308 0.351 2e-103
RGD|1306406 1386 Cpsf1 "cleavage and polyadenyl 0.370 0.318 0.353 7e-103
MGI|MGI:2679722 1441 Cpsf1 "cleavage and polyadenyl 0.370 0.306 0.351 7.3e-103
UNIPROTKB|Q10570 1443 CPSF1 "Cleavage and polyadenyl 0.372 0.307 0.350 2.9e-102
FB|FBgn0024698 1455 Cpsf160 "Cleavage and polyaden 0.395 0.324 0.310 1.6e-86
DICTYBASE|DDB_G0281585 1628 cpsf1 "cleavage and polyadenyl 0.219 0.160 0.349 4.8e-73
UNIPROTKB|F1RSN81108 CPSF1 "Uncharacterized protein 0.256 0.276 0.350 9.9e-71
TAIR|locus:2153122 CPSF160 "cleavage and polyadenylation specificity factor 160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2330 (825.3 bits), Expect = 0., Sum P(2) = 0.
 Identities = 445/605 (73%), Positives = 500/605 (82%)

Query:   542 VELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTE 601
             VELPGCKGIWTVYHKSSRGHNADSS+MAA +DEYHAYLIISLEARTMVLETADLLTEVTE
Sbjct:   570 VELPGCKGIWTVYHKSSRGHNADSSKMAADEDEYHAYLIISLEARTMVLETADLLTEVTE 629

Query:   602 SVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPXXXXXXXXXXXXTV 661
             SVDY+VQGRTIAAGNLFGRRRVIQVFE GARILDGS+M Q+LSFG             TV
Sbjct:   630 SVDYYVQGRTIAAGNLFGRRRVIQVFEHGARILDGSFMNQELSFGASNSESNSGSESSTV 689

Query:   662 LSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPW 721
              SVSIADPYVLL M+D SIRLLVGDPSTCTVS+ +P+ +E SK+ +S+CTLYHDKGPEPW
Sbjct:   690 SSVSIADPYVLLRMTDDSIRLLVGDPSTCTVSISSPSVLEGSKRKISACTLYHDKGPEPW 749

Query:   722 LRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFV 781
             LRK STDAWLS+GVGEA+D  DGGP DQGDIY VVCYESGALEIFDVP+FNCVF+VDKF 
Sbjct:   750 LRKASTDAWLSSGVGEAVDSVDGGPQDQGDIYCVVCYESGALEIFDVPSFNCVFSVDKFA 809

Query:   782 SGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFL 841
             SGR H+ D  + E     E E+N +SE+ T    KE I + +VVELAMQRWS HH+RPFL
Sbjct:   810 SGRRHLSDMPIHEL----EYELNKNSEDNTSS--KE-IKNTRVVELAMQRWSGHHTRPFL 862

Query:   842 FAILTDGTILCYQAYLFEGPENTSKSDDPXXXXXXXXXXXXXXXXXXXLRFSRTPLDAYT 901
             FA+L DGTILCY AYLF+G ++T K+++                    L+F R PLD  T
Sbjct:   863 FAVLADGTILCYHAYLFDGVDST-KAENSLSSENPAALNSSGSSKLRNLKFLRIPLDTST 921

Query:   902 REETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLH 961
             RE T  G   QRIT+FKNISGHQGFFLSGSRP WCM+FRERLR H QLCDGSI AFTVLH
Sbjct:   922 REGTSDGVASQRITMFKNISGHQGFFLSGSRPGWCMLFRERLRFHSQLCDGSIAAFTVLH 981

Query:   962 NVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIV 1021
             NVNCNHGFIYVT+QG+LKICQLPS S YDNYWPVQK IPLKATPHQ+TY+AEKNLYPLIV
Sbjct:   982 NVNCNHGFIYVTAQGVLKICQLPSASIYDNYWPVQK-IPLKATPHQVTYYAEKNLYPLIV 1040

Query:  1022 SVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTR 1081
             S PV KPLNQVLS L+DQE G Q+DNHN+SS DL RTYTVEE+E++ILEP+R+GGPW+T+
Sbjct:  1041 SYPVSKPLNQVLSSLVDQEAGQQLDNHNMSSDDLQRTYTVEEFEIQILEPERSGGPWETK 1100

Query:  1082 ATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADN 1141
             A IPMQ+SE+ALTVRVVTL N +T ENETLLA+GTAYVQGEDVAARGRVLLFS G+N DN
Sbjct:  1101 AKIPMQTSEHALTVRVVTLLNASTGENETLLAVGTAYVQGEDVAARGRVLLFSFGKNGDN 1160

Query:  1142 PQNLV 1146
              QN+V
Sbjct:  1161 SQNVV 1165
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA;IDA
GO:0006378 "mRNA polyadenylation" evidence=ISS
GO:0006379 "mRNA cleavage" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0005829 "cytosol" evidence=IDA
GO:0006397 "mRNA processing" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0016570 "histone modification" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
ZFIN|ZDB-GENE-040709-2 cpsf1 "cleavage and polyadenylation specific factor 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PC28 CPSF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q10569 CPSF1 "Cleavage and polyadenylation specificity factor subunit 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1306406 Cpsf1 "cleavage and polyadenylation specific factor 1, 160kDa" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2679722 Cpsf1 "cleavage and polyadenylation specific factor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q10570 CPSF1 "Cleavage and polyadenylation specificity factor subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0024698 Cpsf160 "Cleavage and polyadenylation specificity factor 160" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281585 cpsf1 "cleavage and polyadenylation specificity factor 160 kDa subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1RSN8 CPSF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FGR0CPSF1_ARATHNo assigned EC number0.73020.95300.7877yesno
Q7XWP1CPSF1_ORYSJNo assigned EC number0.60060.94040.7779yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00038486001
SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (1448 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00037665001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (740 aa)
   •••• 0.865
GSVIVG00016982001
SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (771 aa)
    ••• 0.757
GSVIVG00020879001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (427 aa)
    ••• 0.681
GSVIVG00028411001
SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (572 aa)
    • • 0.676
GSVIVG00000022001
SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (461 aa)
     •• 0.517
GSVIVG00006902001
SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (863 aa)
     •• 0.510
GSVIVG00023663001
SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (97 aa)
   • •  0.506
GSVIVG00010279001
SubName- Full=Chromosome undetermined scaffold_252, whole genome shotgun sequence; (561 aa)
   • •  0.506
GSVIVG00037110001
SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (512 aa)
   • •  0.496
GSVIVG00001949001
SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (2072 aa)
   • •  0.495

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1192
COG5161 1319 COG5161, SFT1, Pre-mRNA cleavage and polyadenylati 2e-22
pfam03178 318 pfam03178, CPSF_A, CPSF A subunit region 2e-08
pfam10433513 pfam10433, MMS1_N, Mono-functional DNA-alkylating 2e-07
COG5161 1319 COG5161, SFT1, Pre-mRNA cleavage and polyadenylati 4e-06
>gnl|CDD|227490 COG5161, SFT1, Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification] Back     alignment and domain information 
 Score =  104 bits (260), Expect = 2e-22
 Identities = 117/652 (17%), Positives = 222/652 (34%), Gaps = 115/652 (17%)

Query: 100 SLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSM 159
            L LV  + L   V  +    Q     S  +D ++L    AKIS+L FD   +  R  S+
Sbjct: 48  GLVLVDEHMLLEKVTQIEKYPQI----SSEQDGLLLLTHRAKISLLRFDSQANEFRTISL 103

Query: 160 HC---------------FESPEW-------LHLKRGRESFARGPLVK-----VDPQGRCG 192
           H                F + E+       L       +F    + K     V      G
Sbjct: 104 HYYEGKFKGKSLVELAKFSTLEFDIRSSCALLFNEDIGNFLPFHVNKNDDDEVRIDVDLG 163

Query: 193 GVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLD--MKHVKDFI 250
            +     +   +  SQG +     + T    G FSA    S V+   +LD  +K++ DF+
Sbjct: 164 -MFQMSKRHFSIFPSQGTNTFNKRKRTL-FPGKFSA---PSKVLKFSELDGKIKNIIDFV 218

Query: 251 FVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYK 310
           F+  Y  P + +L++ +L+   + +   +       ++     +  +I   + LP D   
Sbjct: 219 FLENYSIPTVALLYDPKLSLPRKYTILKNPYNAIVFTLDLGAGRSAVIDEFLVLPRDFR- 277

Query: 311 LLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYA---VSLDSSQELPRSSFSVELDAA 367
            + V  P+G +L      I   S  +S  + LN+ +         +++  S  +      
Sbjct: 278 -VTVAGPVGALLFGSNELILIDSTGSSYTIPLNSMSEKYGGNKIVEDISLSDVNCFSRGT 336

Query: 368 HATWL-----QNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSK----TNPSVLTSDITTI 418
            + W+       +   L    GD   L +  DG+ +   D++      +     S ++ +
Sbjct: 337 TSIWIPSSKCLIETLFLGDLNGDRYYLRISMDGKRIIGFDIASLEFEGDLLKKGSAVSCV 396

Query: 419 ---GNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDAL 475
               N LFF G    +S +++       S+L +    E    E   P    L   + + +
Sbjct: 397 GHVNNLLFFGGVGDSNSRVLRI-----KSLLPT---IETRASEGVGP----LEGGNDEEM 444

Query: 476 QDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYG-------------- 521
            D  +  E  L+G+         + +   + ++L N GP+ DF+ G              
Sbjct: 445 DDEYSAPENKLFGNKEQEVRRQDEPYDAELFNALSNAGPITDFAVGKVDVEKGLPIPNIG 504

Query: 522 ------LRINADASATGISKQSNYELVELP----GCKGIWTVYHKSSRGHNADSSRMAAY 571
                  + +   +A  +   S    +         + +W+      RG+        A 
Sbjct: 505 LLNLVVTKGSDSEAALAVEGTSLEPCICTVSSFIPLEIVWSQ---KIRGYLRC---SRAL 558

Query: 572 DDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGA 631
           D     + I+S  + + +   ++         +Y     T+         RV+QV     
Sbjct: 559 D-----FYILSRVSDSRIFRWSEEFLLEVSG-EYTRDVNTLLFVEFGEENRVVQVTPSYL 612

Query: 632 RILDGSY-MTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRL 682
              D    M   + F            +  V + S+ DP +L+    G I  
Sbjct: 613 LRYDQDLRMLGRVEF-----------ASRAVEARSVRDPLILVVRDSGKILT 653

Length = 1319
>gnl|CDD|217409 pfam03178, CPSF_A, CPSF A subunit region Back     alignment and domain information
>gnl|CDD|220751 pfam10433, MMS1_N, Mono-functional DNA-alkylating methyl methanesulfonate N-term Back     alignment and domain information
>gnl|CDD|227490 COG5161, SFT1, Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1192
KOG1896 1366 consensus mRNA cleavage and polyadenylation factor 100.0
KOG1897 1096 consensus Damage-specific DNA binding complex, sub 100.0
KOG1898 1205 consensus Splicing factor 3b, subunit 3 [RNA proce 100.0
COG5161 1319 SFT1 Pre-mRNA cleavage and polyadenylation specifi 100.0
PF10433504 MMS1_N: Mono-functional DNA-alkylating methyl meth 100.0
PF03178 321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 99.35
KOG2055514 consensus WD40 repeat protein [General function pr 95.67
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 95.28
KOG1539 910 consensus WD repeat protein [General function pred 94.95
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 94.77
KOG1274 933 consensus WD40 repeat protein [General function pr 94.6
KOG2055514 consensus WD40 repeat protein [General function pr 93.83
PF14727418 PHTB1_N: PTHB1 N-terminus 93.36
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 92.76
PF14727418 PHTB1_N: PTHB1 N-terminus 91.74
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 90.76
KOG0294362 consensus WD40 repeat-containing protein [Function 89.78
KOG0318603 consensus WD40 repeat stress protein/actin interac 87.47
KOG0294362 consensus WD40 repeat-containing protein [Function 80.71
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1e-169  Score=1511.92  Aligned_cols=1038  Identities=39%  Similarity=0.642  Sum_probs=850.9

Q ss_pred             chhhhhccCCCceeeEEEEEeecCCCCCCCCCcccccccccccCCCCCCCCCCCeEEEEcCCeEEEEEEEEeccCCcccc
Q 001003            3 FAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKESK   82 (1192)
Q Consensus         3 ~~~~~~~~~pT~V~hsv~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLVvak~n~LeIy~v~~~~~g~~~~~   82 (1192)
                      |++|++.|+||+|+||++|+||+....                           ||||+++|.|+||+++.++.+.+.  
T Consensus         2 ~~vykq~h~~T~ve~s~ag~Ft~~~~~---------------------------nlvV~~~N~L~vyri~~~~e~~t~--   52 (1366)
T KOG1896|consen    2 FAVYKQEHDPTVVENSSAGLFTNNRTE---------------------------NLVVAGTNILRVYRISRDAEALTK--   52 (1366)
T ss_pred             cchhhhccCchhhccceeeeEecCCCc---------------------------ceEEecccEEEEEEeccchhhccc--
Confidence            689999999999999999999987765                           999999999999999865322100  


Q ss_pred             CCccccccccccccccccEEEEEEEEeeeEEeEEEEEecCCCCCCCCccEEEEEeCCCeEEEEEEeCCCCCEEEEeeeee
Q 001003           83 NSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCF  162 (1192)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~L~lv~e~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~~aklsil~~d~~~~~l~t~Slh~~  162 (1192)
                           .....+.+..+.||+|+++|.+||+|++|++++..|+    .+|+|+++|++||+|++|||+.+|+|+|.|||||
T Consensus        53 -----~~~~~~~~~~~~~LeLv~~~~l~GnV~si~~~~~~gs----~rD~LlL~f~~AKiSvlefD~~t~sl~TlSLHyf  123 (1366)
T KOG1896|consen   53 -----NDPGDMGKAHRKKLELVAEFKLFGNVTSIAKLPLKGS----NRDALLLLFKDAKISVLEFDPQTNSLRTLSLHYF  123 (1366)
T ss_pred             -----cCccccccccceEEEEEEEEEeecceeeEEEeecCCC----CcceEEEEeccceEEEEEecCCccceeeeeeEEe
Confidence                 1122344445567999999999999999999999987    6999999999999999999999999999999999


Q ss_pred             eccccccccCCcccccCCCeEEECCCCcEEEEEEcCceEEEEeCccCCCCCCCCCCCCCCCCCccceeeceEEEEccccC
Q 001003          163 ESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLD  242 (1192)
Q Consensus       163 E~~~~~~~~~G~~~~~~~~~l~VDP~~Rc~~l~~y~~~L~ilP~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~i~l~~ld  242 (1192)
                      |.++   .+.|++....+|.++|||++||++|++|+..|+||||++.+ .+++++.. ..+....+.+.+||+|.+.+||
T Consensus       124 E~~~---~~~~~~~~~~~p~vrvDPdsrCa~llvyg~~m~iLpf~~~e-~~~~~~~~-~~~~~~ss~~~pSyvi~~reLd  198 (1366)
T KOG1896|consen  124 EGPE---FRKGLVGRAKIPTVRVDPDSRCALLLVYGLRMAILPFRVNE-HLDDEELF-PSGFSKSSFTAPSYVIALRELD  198 (1366)
T ss_pred             cccc---ccccccccccCceEEECCCCCeEEEEEecceEEEeeccccc-cccccccc-cccccccccccceeEEEhhhhh
Confidence            9986   45566666778999999999999999999999999998863 24433322 2223334578999999999998


Q ss_pred             --ccceeeeeeccCCcccEEEEEEecCCCcccceeeeeeeeEEEEEEEeeccceeeeeeeeccCCcccceeEEecCCCCe
Q 001003          243 --MKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGG  320 (1192)
Q Consensus       243 --i~~V~D~~FL~gy~~PtlaiL~e~~~tw~gr~~~~~dt~~l~~~sLdl~~k~~~~i~s~~~Lp~d~~~LipvP~p~GG  320 (1192)
                        |+||+|++|||||++||+||||||.+||+||+..|+|||.+++++||+++|.||+||++.+||+||+.+.+||.|+||
T Consensus       199 eki~niiD~qFLhgY~ePTl~ILyep~~tw~grv~~r~dt~~~vaisLni~q~~hpVI~sv~sLP~D~~~~~~vp~piGg  278 (1366)
T KOG1896|consen  199 EKIKNIIDFQFLHGYYEPTLAILYEPEQTWAGRVILRKDTCVLVAISLNITQKVHPVIWSVLSLPFDCYQATAVPTPIGG  278 (1366)
T ss_pred             hhhccceeEEeecCcccceEEEEecccccccceEEEecCcEEEEEEEcCccccccceEeeeccCChhhhhceeecccCcc
Confidence              889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecceEEEEeCCC-ceeEeccccccccCCCccCcCCCceeEeeceeeEEeeCcEEEEEcCCCCEEEEEEEEC-CceE
Q 001003          321 VLVVGANTIHYHSQSA-SCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYD-GRVV  398 (1192)
Q Consensus       321 vLVig~n~I~y~d~~~-~~~~a~N~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~Ll~~~~G~L~~l~l~~d-g~~V  398 (1192)
                      |||++.|.++|++|++ ++++++|++++..+.++.+||+.+++.|+++..+|++.+++++++.+|++|+|+|.+| +|.|
T Consensus       279 vLv~~~n~~iy~nqsv~~~gv~LNs~a~~~t~fpl~~qs~v~i~ld~a~~t~i~~dk~vis~~~Gd~y~Ltl~~D~~r~V  358 (1366)
T KOG1896|consen  279 VLVFTVNNLIYLNQSVSPYGVALNSYASKYTAFPLIPQSGVRIELDCANATWISNDKCVISLKNGDLYLLTLILDIGRSV  358 (1366)
T ss_pred             EEEEeeeeEEEEccCCCceeEEecchhhcccCCccccccceEEEEeeccceeecCCeEEEecCCCcEEEEEEEeccccch
Confidence            9999999999999998 5999999999999999999999999999999999999999999999999999999999 7999


Q ss_pred             eeEEEEecCCCccccceEEecCCeEEEEeeeCCeEEEEEeeCCCcccccCCCccccCCcccCCccchhccCCCcchhhcc
Q 001003          399 QRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDM  478 (1192)
Q Consensus       399 ~~l~l~~~~~~~~~s~l~~l~~g~lFvGS~~GDS~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~d~~  478 (1192)
                      +.+++.++..+++++|++-..+++||+||+.|||+|+||+++...+.  .+...|+.+.+....+.++.+...+..+||.
T Consensus       359 ~~~~f~k~~asvl~t~~v~~~n~llFlGSrlgnSlll~~s~~~~~~~--e~~~re~~d~~~~~~~~~~~d~~~d~~~~d~  436 (1366)
T KOG1896|consen  359 QLLHFDKFKASVLATSIVGHGNNLLFLGSRLGNSLLLRFSELLQRAS--EGVRREEGDTESDGYSKKRVDDTQDVRRDDE  436 (1366)
T ss_pred             hhhhhhhhhcccceeeeeccCCccEEEEecCCCEEEEEehhccccCC--ccccccccCCcCCcchhhcccchhhhhhhhh
Confidence            99999999999999999999999999999999999999998764221  2222222222222223333221111111111


Q ss_pred             cCcccc------ccccCCCCCccccccceeEEEEeeecccCCccccccccccCCCC---------------CccCCCCCC
Q 001003          479 VNGEEL------SLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADA---------------SATGISKQS  537 (1192)
Q Consensus       479 ~~~~e~------~ly~~~~~~~~~~~~~~~~~v~Dsl~NigPI~D~~vg~~~~~~~---------------~~sG~g~~g  537 (1192)
                       .-++.      .-||+++..+.   ..+.|++||+|+|||||.||++|...+.+.               .|+|.|++|
T Consensus       437 -~~~~~~~~g~~~~~g~~a~~t~---~~f~fevcDsL~NIGPi~~~avG~~~~~~~~~~gl~~~~~~~elV~~sGhgkng  512 (1366)
T KOG1896|consen  437 -KSAELFEAGSEENYGSGAQETV---QPFSFEVCDSLPNIGPITDFAVGKRSSASEAVEGLSPHNKCLELVATSGHGKNG  512 (1366)
T ss_pred             -hccchhhccccccCCcccceee---eeeEEeehhccccccccccceeccccchhhhccCCCCCCCeEEEEEeccCCCCc
Confidence             00111      22333322211   238899999999999999999998654221               278999999


Q ss_pred             ceEE------------EeCCCcCEEEEEEecCCCCCCCCcccccccCCCcceEEEEEeccceEEEEecCceeeeecccCc
Q 001003          538 NYEL------------VELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDY  605 (1192)
Q Consensus       538 sL~i------------~eLpg~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLvlS~~~~T~Vl~~g~~~eEv~~~~gF  605 (1192)
                      .|.+            ++||||.++|||..+....+         .++.-|.||++|..++|+||++|+++.|++. .+|
T Consensus       513 aL~V~r~sI~P~i~t~fel~Gc~~iWtV~~~~~~~~---------~~~~~h~~lilS~e~~t~il~tge~~~Ev~~-s~f  582 (1366)
T KOG1896|consen  513 ALSVIRRSIRPEIATEFELPGCVDIWTVFIKGRKRE---------EDNTQHLYLILSTESRTMILETGEELLEVSG-SGF  582 (1366)
T ss_pred             ceEEEeecccceeeEEEEecCeeeEEEEEEeccccc---------cccCcceEEEeecccchhhhhccchhhhccc-cee
Confidence            9987            78999999999998654322         2334599999999999999999999999975 589


Q ss_pred             cccCCcEEEEeeCCCCEEEEEecCcEEEEeCC-cceeeeecCCCCCCCCCCCCCCcEEEEEEcCCEEEEEEeCCcEEEEE
Q 001003          606 FVQGRTIAAGNLFGRRRVIQVFERGARILDGS-YMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLV  684 (1192)
Q Consensus       606 ~~~~~TI~ag~l~~~~~IvQVt~~~vrli~~~-~~~q~i~~~~~~~e~~~~~~~~~Iv~asi~dpyvlv~~~dg~i~~l~  684 (1192)
                      ..+++||++|+++++++|||||++++|++|++ .+.|.+++.          .+..+++++++||||+|....|.|.+|.
T Consensus       583 ~~~~~Tl~~gnlg~~rriVQVtp~~~rllDg~~r~lq~i~fd----------~~~~vv~~sv~dpyv~v~~~~g~i~~~~  652 (1366)
T KOG1896|consen  583 TRDGPTLFAGNLGNERRIVQVTPSGLRLLDGDLRMLQRIPFD----------SGAIVVQTSVADPYVAVRSSEGRITLYD  652 (1366)
T ss_pred             EeccceEEEEecCCceEEEEEccceeEEecCcchheeEeccc----------cCCcEEEEeccCceEEEEEcCCceEEEE
Confidence            99999999999999999999999999999995 578888882          3456999999999999999999999999


Q ss_pred             ecCCCceEeeccccccccCCCceeEEEeeccCCC-------------CCcccccccccccccCccccccCCCCCCCCCCc
Q 001003          685 GDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGP-------------EPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGD  751 (1192)
Q Consensus       685 ~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (1192)
                      ++.+..+|-+.++  +   ...+.++++|.|.+.             .+|.+.. ++.+..... ..+++.+++...+..
T Consensus       653 l~~~s~rl~~~~~--~---s~~~~sv~~~~dlsg~f~~~s~l~~k~~~~~gr~~-~~~~~~~~~-~kv~~~egg~~~~~~  725 (1366)
T KOG1896|consen  653 LEEKSHRLALHDP--M---SFKVVSVSLPADLSGMFTTLSDLSLKGNEANGRSS-EAEGLQSLP-CKVDDEEGGSPEQEP  725 (1366)
T ss_pred             eccccchhhccCc--c---cceeEEEechhhhccceEEEeeecccCcccccccc-cccccccCC-ccccCCCCCCcccCc
Confidence            9887666655554  2   345666677766542             2222222 111111111 334433322222223


Q ss_pred             EEEEEEecCCeEEEEECCCceeeEEeeccccccceecccccccccccccccccCCCccCCCCCcccccccccEEEEEEee
Q 001003          752 IYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQR  831 (1192)
Q Consensus       752 ~~l~v~~~~g~l~I~sLP~~~~v~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eil~~~  831 (1192)
                      +||++++++|.|+||++|++++||.++.|+.++++|.|+....++..                  +...+..+.++...+
T Consensus       726 ~~~~~~~e~g~leiy~~pd~~lVf~v~~f~~~~~~L~~~~~~~~~~~------------------~~s~~~~l~q~~~~~  787 (1366)
T KOG1896|consen  726 YWCVFVTESGTLEIYALPDFDLVFEVDMFDTGNRVLMDSRLRGPTTN------------------KESEDLELKQLFVNP  787 (1366)
T ss_pred             eEEEEEcCCCceEEEccCCcceEEEeeccCCCcceEEeecccCcccc------------------ccccchHHHHhhccc
Confidence            99999999999999999999999999999999999988533222100                  001124567777888


Q ss_pred             cCCC--CCccEEEEEecCCcEEEEEEeeecCCCCCCCCCCCCccccccccccccccccceeeEEecCCCccCCCCC----
Q 001003          832 WSAH--HSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREET----  905 (1192)
Q Consensus       832 ~g~~--~~~p~Llv~l~dG~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrF~kv~~~~~~~~~~----  905 (1192)
                      +|.+  ..+|||+..+.+|++++|++|+..   +                     ++..+++|+|+|++...++.+    
T Consensus       788 L~~e~~~~e~~L~lv~~~~eil~Ykaf~~~---~---------------------~~~~~~~f~kvp~~~~~~~~~p~~~  843 (1366)
T KOG1896|consen  788 LGSEIVFKEPHLFLVVSDNEILIYKAFPQL---S---------------------QGNLKVFFKKVPHNLNIRTDKPHFL  843 (1366)
T ss_pred             cchhhhccCCceEEEEeCceEEEEeecccc---C---------------------ccchhhhhhhCCHhhcccccCCccc
Confidence            8877  789999999999999999999611   1                     111256899999866543321    


Q ss_pred             -------------CCCCCccceEEeeccCCceEEEEcCCCCeEEEE-eCCceEEEecCCCCceeEEecccCCCCCCcEEE
Q 001003          906 -------------PHGAPCQRITIFKNISGHQGFFLSGSRPCWCMV-FRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIY  971 (1192)
Q Consensus       906 -------------~~~~g~~~l~~f~~i~G~~gVF~~G~rP~wi~~-~~g~l~~~p~~~~~~v~~~t~F~~~~c~~Gfi~  971 (1192)
                                   ..+...+++++|++++||+|||+||++|+||+. .+|.+++||+.+.++|.+|+||||+|||+||+|
T Consensus       844 ~~~~~~~~~e~~~~~~~~~~~m~~f~~i~ghsgvfv~Gs~P~~il~t~rg~lr~h~~~gngpv~sfapfhnvn~p~gfiy  923 (1366)
T KOG1896|consen  844 CKKREGGGAEEGASVSVIVQRMTYFEDIGGHSGVFVTGSKPYLILLTFRGVLRFHPVFGNGPVGSFAPFHNVNCPRGFIY  923 (1366)
T ss_pred             chhhccccccccccccceeeeEEeeccccCeeEEEEecCCceEEEEEcccccceeeeecCCcceeeeeeeccCCCcceEE
Confidence                         122345689999999999999999999999998 599999999999999999999999999999999


Q ss_pred             EEecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEecCCCEEEEEEeecCccccccccccccccccccccccCCCC
Q 001003          972 VTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLS 1051 (1192)
Q Consensus       972 ~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~~~~~y~v~~s~~~~~~~~~~~~~~~~ee~~~~~~~~~~~ 1051 (1192)
                      |+.++.++||.+|+...||+.||+|| |||++|||+++||++.++|+|+++.+.  ++   +.  .++|..+    +..+
T Consensus       924 vd~~~~l~i~~lp~~~~Ydn~wPvkk-Ipl~~T~~~vvYh~e~~vy~v~t~~~~--~~---~~--~~~d~~e----~~~~  991 (1366)
T KOG1896|consen  924 VDRQGELVICVLPEALSYDNKWPVKK-IPLRKTPHQVVYHYEKKVYAVITSTPV--PY---ER--LGEDGEE----EVIS  991 (1366)
T ss_pred             ECCCceEEEEEcchhcccCCCCcccc-cccccchhheeeeccceEEEEEEeccc--ee---ee--ccccccc----cccc
Confidence            99999999999999999999999999 999999999999999999999998752  22   22  2333221    1345


Q ss_pred             ccccccCcceeeeEEEEEcCCCCCCCceeeeeEECCCCcceEEEEEEEecc-ccCCCCceEEEEEeccccCcccccCceE
Q 001003         1052 SVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFN-TTTKENETLLAIGTAYVQGEDVAARGRV 1130 (1192)
Q Consensus      1052 ~~~~~~~p~~~~~sv~Lldp~~~~~twe~id~~el~~~E~v~sv~~v~L~s-~~t~~~~~ylaVGTa~~~gEd~~~rGRI 1130 (1192)
                      .+|..+.|+.++|+|+|++|.    +|++++.|+|++||||++||.|.|.+ ++++++|+||||||++++|||.|+||||
T Consensus       992 ~de~~~~p~~~~f~i~LisP~----sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~ 1067 (1366)
T KOG1896|consen  992 RDENVIHPEGEQFSIQLISPE----SWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRI 1067 (1366)
T ss_pred             ccccccccccccceeEEecCC----ccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccE
Confidence            678889999999999999995    99999999999999999999999995 4567789999999999999999999999


Q ss_pred             EEEEeee---CCCCCceeEeecccCcccccchhcccCceEEEeecc---------eEEeeeh
Q 001003         1131 LLFSTGR---NADNPQNLVLSGSYGPLFSSVQIDFASHFFAICSNS---------FVFVFLF 1180 (1192)
Q Consensus      1131 lvfev~~---~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---------~~~~~~~ 1180 (1192)
                      +|||||+   +|++|.|.+   |+|-+|.   +|.||++.|.|.++         ||+||-|
T Consensus      1068 hi~diIeVVPepgkP~t~~---KlKel~~---eE~KGtVsavceV~G~l~~~~GqKI~v~~l 1123 (1366)
T KOG1896|consen 1068 HIFDIIEVVPEPGKPFTKN---KLKELYI---EEQKGTVSAVCEVRGHLLSSQGQKIIVRKL 1123 (1366)
T ss_pred             EEEEEEEecCCCCCCcccc---eeeeeeh---hhcccceEEEEEeccEEEEccCcEEEEEEe
Confidence            9999997   999999999   9999999   99999999999988         7888777

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] Back     alignment and domain information
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification] Back     alignment and domain information
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1192
4a0b_A 1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 6e-06
2b5l_A 1140 Crystal Structure Of Ddb1 In Complex With Simian Vi 8e-06
3ei4_A 1158 Structure Of The Hsddb1-Hsddb2 Complex Length = 115 8e-06
3i7h_A 1143 Crystal Structure Of Ddb1 In Complex With The H-Box 9e-06
4a08_A 1159 Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Dup 1e-05
3e0c_A 1140 Crystal Structure Of Dna Damage-Binding Protein 1(D 2e-05
4e54_A 1150 Damaged Dna Induced Uv-Damaged Dna-Binding Protein 2e-05
4a0a_A 1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 2e-05
4a11_A 1159 Structure Of The Hsddb1-Hscsa Complex Length = 1159 2e-05
3ei1_A 1158 Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Pho 2e-05
4a0l_A 1144 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 2e-05
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4) Length = 1159 Back     alignment and structure 
Iteration: 1

 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 96/461 (20%), Positives = 172/461 (37%), Gaps = 116/461 (25%)
Query: 185 VDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMK 244
           +DP+ R  G+ +Y     ++   +    L            F+ R+E  HVI+++     
Sbjct: 143 IDPECRMIGLRLYDGLFKVIPLDRDNKEL----------KAFNIRLEELHVIDVK----- 187
Query: 245 HVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNL 304
                 F++G   P +  +++      GR     H              + P  W   N+
Sbjct: 188 ------FLYGCQAPTICFVYQDP---QGR-----HVKTYEVSLREKEFNKGP--WKQENV 231
Query: 305 PHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSV-- 362
             +A  ++AVPSP GG +++G  +I YH+     A+A             + + S  V  
Sbjct: 232 EAEASMVIAVPSPFGGAIIIGQESITYHNGDKYLAIA-----------PPIIKQSTIVCH 280
Query: 363 -ELDAAHATWLQNDVALLSTKTGDLVLLTV----VYDGRV-VQRLDLSKTNPSVLTSDIT 416
             +D   + +L  D+       G L +L +      DG V ++ L +     + +   +T
Sbjct: 281 NRVDPNGSRYLLGDME------GRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLT 334
Query: 417 TIGNSLFFLGSRLGDSLLVQFTCGS---GTSMLSSGLKEEFGDIEADAPSTKRLRRSSSD 473
            + N + F+GSRLGDS LV+    S   G+ +++       G I  D       R+    
Sbjct: 335 YLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPI-VDMCVVDLERQGQGQ 393
Query: 474 ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGI 533
            +                        T S A ++     G L+    G+ I+  AS    
Sbjct: 394 LV------------------------TCSGAFKE-----GSLRIIRNGIGIHEHAS---- 420
Query: 534 SKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETA 593
                   ++LPG KG+W +    +R              E    L++S   +T VL   
Sbjct: 421 --------IDLPGIKGLWPLRSDPNR--------------ETDDTLVLSFVGQTRVLMLN 458
Query: 594 DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARIL 634
               E TE + +    +T   GN+   +++IQ+     R++
Sbjct: 459 GEEVEETELMGFVDDQQTFFCGNV-AHQQLIQITSASVRLV 498
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V Protein Length = 1140 Back     alignment and structure
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex Length = 1158 Back     alignment and structure
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of Hbx Length = 1143 Back     alignment and structure
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex ( Purine At D-1 Position) At 3.0 A Resolution (Cpd 1) Length = 1159 Back     alignment and structure
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1) Length = 1140 Back     alignment and structure
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 1150 Back     alignment and structure
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3) Length = 1159 Back     alignment and structure
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex Length = 1159 Back     alignment and structure
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct Containing Dna-Duplex Length = 1158 Back     alignment and structure
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 1144 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1192
3ei3_A 1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 4e-54
3ei3_A 1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 4e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Length = 1158 Back     alignment and structure
 Score =  205 bits (523), Expect = 4e-54
 Identities = 121/716 (16%), Positives = 225/716 (31%), Gaps = 166/716 (23%)

Query: 1   MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVV 60
           MS+        PT +  C +G  T +                              NL++
Sbjct: 19  MSYNYVVTAQKPTAVNGCVTGHFTSAEDL---------------------------NLLI 51

Query: 61  TAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILS 120
                +EIY   V  EG                       L  V    ++G +  + +  
Sbjct: 52  AKNTRLEIY--VVTAEG-----------------------LRPVKEVGMYGKIAVMELFR 86

Query: 121 QGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARG 180
             G      +D + +        +LE+  S   + I +       +    + GR S   G
Sbjct: 87  PKGE----SKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQD----RIGRPSE-TG 137

Query: 181 PLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRD 240
            +  +DP+ R  G+ +Y     ++   +    L                       N+R 
Sbjct: 138 IIGIIDPECRMIGLRLYDGLFKVIPLDRDNKEL--------------------KAFNIR- 176

Query: 241 LDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWS 300
           L+  HV D  F++G   P +  +++           K +   +           +   W 
Sbjct: 177 LEELHVIDVKFLYGCQAPTICFVYQDPQGRH----VKTYEVSLREKEF------NKGPWK 226

Query: 301 AMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSF 360
             N+  +A  ++AVP P GG +++G  +I YH+     A+A             + + S 
Sbjct: 227 QENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPP-----------IIKQS- 274

Query: 361 SVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDG-----RVVQRLDLSKTNPSVLTSDI 415
              +   +         LL    G L +L +  +        ++ L +     + +   +
Sbjct: 275 --TIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECL 332

Query: 416 TTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDAL 475
           T + N + F+GSRLGDS LV+    S          E F ++    P            +
Sbjct: 333 TYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNL---GPIV-------DMCV 382

Query: 476 QDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISK 535
            D+    +  L   +    E +                 L+    G+ I+  AS      
Sbjct: 383 VDLERQGQGQLVTCSGAFKEGS-----------------LRIIRNGIGIHEHAS------ 419

Query: 536 QSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADL 595
                 ++LPG KG+W +                  + E    L++S   +T VL     
Sbjct: 420 ------IDLPGIKGLWPLRSDP--------------NRETDDTLVLSFVGQTRVLMLNGE 459

Query: 596 LTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQ-DLSFGPSNSESGS 654
             E TE + +    +T   GN+   +++IQ+     R++             P       
Sbjct: 460 EVEETELMGFVDDQQTFFCGNV-AHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISV 518

Query: 655 GSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSC 710
            S NS+ + V++      L +    +R +        V+      +  S      C
Sbjct: 519 ASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLC 574
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Length = 1158 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1192
3ei3_A 1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 100.0
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 97.66
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 97.32
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 97.09
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 96.98
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 96.93
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 96.85
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 96.56
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 96.49
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 96.25
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 96.12
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 96.08
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.08
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 96.07
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 95.97
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 95.96
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 95.88
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 95.73
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 95.65
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 95.61
2ymu_A577 WD-40 repeat protein; unknown function, two domain 95.56
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 95.4
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 95.39
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 95.27
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 95.12
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 94.99
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 94.82
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 94.76
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 94.76
4e54_B435 DNA damage-binding protein 2; beta barrel, double 94.76
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 94.34
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 94.3
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 94.22
2ymu_A577 WD-40 repeat protein; unknown function, two domain 94.05
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 93.89
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 93.68
4g56_B357 MGC81050 protein; protein arginine methyltransfera 93.35
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 93.26
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 93.1
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 92.83
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 92.79
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 92.69
1pgu_A 615 Actin interacting protein 1; WD repeat, seven-blad 92.61
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 92.21
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 92.2
2oaj_A902 Protein SNI1; WD40 repeat, beta propeller, endocyt 92.09
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 91.94
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 91.42
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 91.25
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 91.12
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 91.11
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 90.87
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 90.87
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 90.62
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 90.09
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 89.77
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 89.64
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 89.23
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 89.17
3ow8_A321 WD repeat-containing protein 61; structural genomi 89.14
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 88.88
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 88.4
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 88.01
4g56_B357 MGC81050 protein; protein arginine methyltransfera 87.85
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 87.6
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 87.37
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 86.66
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 86.64
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 86.07
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 85.84
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 85.66
2xyi_A430 Probable histone-binding protein CAF1; transcripti 85.61
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 84.5
3jro_A 753 Fusion protein of protein transport protein SEC13 84.29
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 83.67
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 83.58
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 83.48
2xyi_A430 Probable histone-binding protein CAF1; transcripti 83.09
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 82.91
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 82.72
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 82.57
3jrp_A379 Fusion protein of protein transport protein SEC13 82.41
3jrp_A379 Fusion protein of protein transport protein SEC13 80.45
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 80.27
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
Probab=100.00  E-value=1.5e-122  Score=1215.00  Aligned_cols=856  Identities=19%  Similarity=0.306  Sum_probs=673.7

Q ss_pred             CcchhhhhccCCCceeeEEEEEeecCCCCCCCCCcccccccccccCCCCCCCCCCCeEEEEcCCeEEEEEEEEeccCCcc
Q 001003            1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKE   80 (1192)
Q Consensus         1 m~~~~~~~~~~pT~V~hsv~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLVvak~n~LeIy~v~~~~~g~~~   80 (1192)
                      |+|+|+.++||||+|+||++|||++++.+                           ||||||+|+||||++.+  +|   
T Consensus        19 m~~~Y~~t~~~pT~V~~av~g~F~~~~~~---------------------------~Lvvak~~~Lel~~~~~--~~---   66 (1158)
T 3ei3_A           19 MSYNYVVTAQKPTAVNGCVTGHFTSAEDL---------------------------NLLIAKNTRLEIYVVTA--EG---   66 (1158)
T ss_dssp             CCCEEEEEEECCCSCCEEEEECSSCSSCC---------------------------EEEEEETTEEEEEEEET--TE---
T ss_pred             ccEEEEEEeeCCChhhEEEEEEcCCCCcc---------------------------EEEEecCCEEEEEEEcc--cc---
Confidence            99999999999999999999999999876                           99999999999999762  23   


Q ss_pred             ccCCccccccccccccccccEEEEEEEEeeeEEeEEEEEecCCCCCCCCccEEEEEeCCCeEEEEEEeCCCCCEEEEeee
Q 001003           81 SKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMH  160 (1192)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~L~lv~e~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~~aklsil~~d~~~~~l~t~Slh  160 (1192)
                                          |++++++++||+|++|+++|++++    ++|+|+|+|+++|+++|+||++++.+.+++.|
T Consensus        67 --------------------L~~v~~~~l~G~I~~l~~~r~~g~----~~D~L~v~td~~~~~il~~d~~~~~~~~~t~~  122 (1158)
T 3ei3_A           67 --------------------LRPVKEVGMYGKIAVMELFRPKGE----SKDLLFILTAKYNACILEYKQSGESIDIITRA  122 (1158)
T ss_dssp             --------------------EEEEEEEECSSCEEEEEEECCTTC----SSCEEEEEETTCEEEEEEEEC-CCCCEEEEEE
T ss_pred             --------------------eEEEEEEEcccEEEEEEEEcCCCC----CceEEEEEeCCceEEEEEEcCCCCceeEEEEe
Confidence                                999999999999999999999886    79999999999999999999997766555555


Q ss_pred             eeeccccccccCCcccccCCCeEEECCCCcEEEEEEcCceEEEEeCccCCCCCCCCCCCCCCCCCccceeeceEEEEccc
Q 001003          161 CFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRD  240 (1192)
Q Consensus       161 ~~E~~~~~~~~~G~~~~~~~~~l~VDP~~Rc~~l~~y~~~L~ilP~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~i~l~~  240 (1192)
                      +..-.    .+.|+ ...++++++|||+|||++|++|+++++|+||.+.+..                  ..++.+++.+
T Consensus       123 ~~~~~----~~~~r-~~~~g~~l~vDP~gR~~~l~~~e~~~~v~pl~~~~~~------------------l~~~~~~l~~  179 (1158)
T 3ei3_A          123 HGNVQ----DRIGR-PSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKE------------------LKAFNIRLEE  179 (1158)
T ss_dssp             EEECC----CSSCC-BCTTCCEEEECTTSSEEEEECBTTEEEEEECCTTCTT------------------CCCEEEECSC
T ss_pred             ccccc----cCccc-cCCCCCEEEEcCCCCEEEEEeccCEEEEEEecCCccc------------------cccccccccc
Confidence            42211    24453 3578999999999999999999999999999764321                  1467888877


Q ss_pred             cCccceeeeeeccCCcccEEEEEEecCCCcccceeeeeeeeEEEEEEEeeccce-eeeeeeeccCCcccceeEEecCCCC
Q 001003          241 LDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQ-HPLIWSAMNLPHDAYKLLAVPSPIG  319 (1192)
Q Consensus       241 ldi~~V~D~~FL~gy~~PtlaiL~e~~~tw~gr~~~~~dt~~l~~~sLdl~~k~-~~~i~s~~~Lp~d~~~LipvP~p~G  319 (1192)
                      +   +|+||+|||||+|||||+|||+..   ||        .+++++||+..+. .+.+|++++||++|++|||||+|+|
T Consensus       180 ~---~v~d~~fL~g~~~P~~A~Ly~d~~---~~--------~l~~y~ldl~~~~~~~~~w~~~~l~~~a~~LipVP~~~g  245 (1158)
T 3ei3_A          180 L---HVIDVKFLYGCQAPTICFVYQDPQ---GR--------HVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFG  245 (1158)
T ss_dssp             C---CEEEEEECSSCSSCEEEEEEEETT---EE--------EEEEEEEETTTTEEEECSSCCEEECTTCCEEEECCTTTC
T ss_pred             c---eEEEEEEecCCCCcEEEEEEECCC---CC--------EEEEEEEEcCCCeeeecccccccCCCCCCEEEECCCCCc
Confidence            6   999999999999999999999854   43        3458999998874 4457998899999999999999999


Q ss_pred             eEEEEecceEEEEeCCCceeEeccccccccCCCccCcCCCceeEeeceeeEEe-eCcEEEEEcCCCCEEEEEEEECCc--
Q 001003          320 GVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWL-QNDVALLSTKTGDLVLLTVVYDGR--  396 (1192)
Q Consensus       320 GvLVig~n~I~y~d~~~~~~~a~N~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~Ll~~~~G~L~~l~l~~dg~--  396 (1192)
                      ||||||+|.|+|+|+++...++.          +..+++   + + .|.+.+. +..++||++++|+||+|+|..|++  
T Consensus       246 Gvlv~g~n~i~y~~~~~~~~~~~----------p~~~~~---~-i-~~~~~~~~~~~~~LL~~~~G~l~~l~l~~d~~~~  310 (1158)
T 3ei3_A          246 GAIIIGQESITYHNGDKYLAIAP----------PIIKQS---T-I-VCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMD  310 (1158)
T ss_dssp             CEEEECSSCEEEEETTEEEEECC----------GGGGGS---C-E-EEEEECSTTSSEEEEEETTCEEEEEEEEEEC---
T ss_pred             eEEEEECCEEEEEcCCCceEEec----------cccCCc---e-E-EEEEEEecCCCEEEEEeCCCCEEEEEEEEcCCcc
Confidence            99999999999999887543221          111111   1 2 2333332 346899999999999999999976  


Q ss_pred             ---eEeeEEEEecCCCccccceEEecCCeEEEEeeeCCeEEEEEeeCCCcccccCCCccccCCcccCCccchhccCCCcc
Q 001003          397 ---VVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSD  473 (1192)
Q Consensus       397 ---~V~~l~l~~~~~~~~~s~l~~l~~g~lFvGS~~GDS~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~  473 (1192)
                         .|++|+++|+|++++|+||++|++|+||+||++|||+||||...+          +                     
T Consensus       311 ~~~~V~~l~i~~~~~~~~~ssl~~l~~g~lFvgS~~Gds~l~~~~~~~----------~---------------------  359 (1158)
T 3ei3_A          311 GTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDS----------N---------------------  359 (1158)
T ss_dssp             --CEEEEEEEEEEEECSCCSEEEECSTTEEEEECSSSCEEEEEECSSC----------C---------------------
T ss_pred             CceeEEEEEEEEcCCccCccEEEEECCCEEEEEEecCCcEEEEEecCC----------C---------------------
Confidence               799999999999999999999999999999999999999997631          0                     


Q ss_pred             hhhcccCccccccccCCCCCccccccceeEEEEeeecccCCccccccccccCCCC----CccCCCCCCceEE--------
Q 001003          474 ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADA----SATGISKQSNYEL--------  541 (1192)
Q Consensus       474 ~~d~~~~~~e~~ly~~~~~~~~~~~~~~~~~v~Dsl~NigPI~D~~vg~~~~~~~----~~sG~g~~gsL~i--------  541 (1192)
                         +                     ...+|+++|+++|+|||.||++++.....+    +|||.|++|+|++        
T Consensus       360 ---~---------------------~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~  415 (1158)
T 3ei3_A          360 ---E---------------------QGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIH  415 (1158)
T ss_dssp             ---T---------------------TSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEE
T ss_pred             ---C---------------------ccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEE
Confidence               0                     012489999999999999999987643332    5999999999997        


Q ss_pred             ----EeCCCcCEEEEEEecCCCCCCCCcccccccCCCcceEEEEEeccceEEEEe-cCceeeeecccCccccCCcEEEEe
Q 001003          542 ----VELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLET-ADLLTEVTESVDYFVQGRTIAAGN  616 (1192)
Q Consensus       542 ----~eLpg~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLvlS~~~~T~Vl~~-g~~~eEv~~~~gF~~~~~TI~ag~  616 (1192)
                          .+|||++++|+++..              .++++|+|||+||.++|+||++ |+++||+++ .||.++++||+||+
T Consensus       416 ~~~~~~l~gv~~iWtl~~~--------------~~~~~~~yLvlS~~~~T~Vl~i~~e~veev~~-~gf~~~~~TL~~~~  480 (1158)
T 3ei3_A          416 EHASIDLPGIKGLWPLRSD--------------PNRETDDTLVLSFVGQTRVLMLNGEEVEETEL-MGFVDDQQTFFCGN  480 (1158)
T ss_dssp             EEEEECCCSCCEEEEECCC--------------SSCSSCCEEEEEETTEEEEEEEETTEEEEECC-TTCCSSSCEEEEEE
T ss_pred             EEEeecCCCccEEEEEeec--------------CCCCCCCEEEEECCCCeEEEEEeCCccccccc-ccccCCCCcEEEEE
Confidence                589999999999864              3578999999999999999997 889999964 79999999999999


Q ss_pred             eCCCCEEEEEecCcEEEEeCCc--ceeeeecCCCCCCCCCCCCCCcEEEEEEcCCEEEEEEeCCcEEEEEecCCCceEee
Q 001003          617 LFGRRRVIQVFERGARILDGSY--MTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSV  694 (1192)
Q Consensus       617 l~~~~~IvQVt~~~vrli~~~~--~~q~i~~~~~~~e~~~~~~~~~Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~  694 (1192)
                      + ++++|||||+++||+++.+.  +++         +|.+| .+..|++|++++++|+++. ++.+.+|+++..+  +..
T Consensus       481 l-~~~~ivQVt~~~Irli~~~~~~~~~---------~w~~p-~~~~I~~As~n~~~vvva~-g~~l~~fel~~~~--L~~  546 (1158)
T 3ei3_A          481 V-AHQQLIQITSASVRLVSQEPKALVS---------EWKEP-QAKNISVASCNSSQVVVAV-GRALYYLQIHPQE--LRQ  546 (1158)
T ss_dssp             E-TTTEEEEEESSCEEEEESSSCCEEE---------EECCT-TCCCCCEEEECSSEEEEEE-TTEEEEEEEETTE--EEE
T ss_pred             c-CCCeEEEEecCEEEEEECCCCeEEE---------EEECC-CCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCc--eee
Confidence            9 57799999999999999764  444         56655 6778999999999999994 8899999998632  322


Q ss_pred             ccccccccCCCceeEEEeeccCCCCCcccccccccccccCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCceee
Q 001003          695 QTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCV  774 (1192)
Q Consensus       695 ~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v  774 (1192)
                      .....+   +.+|+|+++....                            .+.....+.++.+|.+++++||+||+++.+
T Consensus       547 ~~~~~l---~~evscl~i~~~~----------------------------~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~  595 (1158)
T 3ei3_A          547 ISHTEM---EHEVACLDITPLG----------------------------DSNGLSPLCAIGLWTDISARILKLPSFELL  595 (1158)
T ss_dssp             EEEEEC---SSCEEEEECCCCS----------------------------SSTTCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             ecccCC---CCceEEEEeecCC----------------------------CCcccccEEEEEECCCCEEEEEECCCCCeE
Confidence            233334   5678887653110                            001123445555777999999999998887


Q ss_pred             EEeeccccccceecccccccccccccccccCCCccCCCCCcccccccccEEEEEEeecCCCCCccEEEEEecCCcEEEEE
Q 001003          775 FTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQ  854 (1192)
Q Consensus       775 ~~~~~l~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eil~~~~g~~~~~p~Llv~l~dG~l~~Y~  854 (1192)
                      ..+. +   +    +                               +..+.+|++..++   ++|||+++|+||.++.|.
T Consensus       596 ~~~~-L---~----~-------------------------------~~~p~si~l~~~~---~~~~L~igl~dG~l~~~~  633 (1158)
T 3ei3_A          596 HKEM-L---G----G-------------------------------EIIPRSILMTTFE---SSHYLLCALGDGALFYFG  633 (1158)
T ss_dssp             EEEE-C---C----S-------------------------------SCCEEEEEEEEET---TEEEEEEEETTSEEEEEE
T ss_pred             EEEE-C---C----C-------------------------------CCCCcEEEEEEeC---CCcEEEEEeCCCeEEEEE
Confidence            6553 1   1    0                               0134568888883   679999999999999998


Q ss_pred             EeeecCCCCCCCCCCCCccccccccccccccccceeeEEecCCCccCCCCCCCCCCccceE--EeeccCCceEEEEcCCC
Q 001003          855 AYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRIT--IFKNISGHQGFFLSGSR  932 (1192)
Q Consensus       855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrF~kv~~~~~~~~~~~~~~g~~~l~--~f~~i~G~~gVF~~G~r  932 (1192)
                      +....+     .+               +++|.   +|                +|.+|++  +|++.+ ..+||++|+|
T Consensus       634 ~d~~tg-----~l---------------~d~r~---~~----------------LG~~pv~L~~~~~~~-~~~V~a~s~r  673 (1158)
T 3ei3_A          634 LNIETG-----LL---------------SDRKK---VT----------------LGTQPTVLRTFRSLS-TTNVFACSDR  673 (1158)
T ss_dssp             ECTTTC-----CE---------------EEEEE---EE----------------CCSSCCEEEEEESSS-CEEEEEESSS
T ss_pred             EcCCCC-----cc---------------cccee---EE----------------cCCCceEEEEEeeCC-ceeEEEECCC
Confidence            642110     11               22221   23                3666655  556554 5899999999


Q ss_pred             CeEEEEeCCceEEEecCCCCceeEEecccCCCCCCcEEEEEecCeEEEEEcCCCCccCCccceEEEecCCCccCeEEEec
Q 001003          933 PCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFA 1012 (1192)
Q Consensus       933 P~wi~~~~g~l~~~p~~~~~~v~~~t~F~~~~c~~Gfi~~~~~~~LrI~~l~~~~~~d~~~~vrk~ipL~~tp~~Iay~~ 1012 (1192)
                      |+|+++++++++++|+ +..++.++|||++++||+||++++.+ +||||++++..    .||+|+ |||++|||||+|||
T Consensus       674 p~liy~~~~~l~~s~l-~~~~v~~~~~F~se~~~~g~v~~~~~-~LrI~~i~~~~----~~~~~~-ipL~~Tprri~y~~  746 (1158)
T 3ei3_A          674 PTVIYSSNHKLVFSNV-NLKEVNYMCPLNSDGYPDSLALANNS-TLTIGTIDEIQ----KLHIRT-VPLYESPRKICYQE  746 (1158)
T ss_dssp             CEEEEESSSSEEEEEB-SSSCCCEEEEECCSSSTTEEEEECSS-CEEEEEECCSS----SEEEEE-EECSSEEEEEEEEG
T ss_pred             CEEEEEcCCceEEecc-ChHHhceEeccCcccCCCcEEEEcCC-ceEEEEecccC----CeeEEE-EeCCCCceEEEEcC
Confidence            9777777899999997 66899999999999999999998877 79999998774    699999 99999999999999


Q ss_pred             CCCEEEEEEeecCcccccc---cccc------ccccccc-cc-cccCCCCccccccCcceeeeEEEEEcCCCCCCCceee
Q 001003         1013 EKNLYPLIVSVPVLKPLNQ---VLSL------LIDQEVG-HQ-IDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTR 1081 (1192)
Q Consensus      1013 ~~~~y~v~~s~~~~~~~~~---~~~~------~~~ee~~-~~-~~~~~~~~~~~~~~p~~~~~sv~Lldp~~~~~twe~i 1081 (1192)
                      ++++|+|++++.+  ++..   ..+.      ..+++.. .. ...+....++..+.++.++++|+|+||.    +|+++
T Consensus       747 ~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~----t~~~i  820 (1158)
T 3ei3_A          747 VSQCFGVLSSRIE--VQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQH----TFEVL  820 (1158)
T ss_dssp             GGTEEEEEEEEEE--EECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETT----TCCEE
T ss_pred             CCCEEEEEEEecc--ccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCC----CCeEE
Confidence            9999999998642  1100   0000      0000000 00 0000001112223344689999999995    99999


Q ss_pred             eeEECCCCcceEEEEEEEeccccCCCCceEEEEEeccccC-cccccCceEEEEEeeeCCCCCceeEeecccCcccccchh
Q 001003         1082 ATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQG-EDVAARGRVLLFSTGRNADNPQNLVLSGSYGPLFSSVQI 1160 (1192)
Q Consensus      1082 d~~el~~~E~v~sv~~v~L~s~~t~~~~~ylaVGTa~~~g-Ed~~~rGRIlvfev~~~~~~~e~~~~~~~~~~~~~~~~~ 1160 (1192)
                      +.|+|++||+++||++|+|.+    +.++||||||++++| ||+++||||+||++++  .+++.+|.++..+++++..+ 
T Consensus       821 ~~~~l~~nE~~~sv~~v~~~~----~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~--~kL~lv~~~~v~g~v~al~~-  893 (1158)
T 3ei3_A          821 HAHQFLQNEYALSLVSCKLGK----DPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD--GKLQTVAEKEVKGAVYSMVE-  893 (1158)
T ss_dssp             EEEECCTTEEEEEEEEECCTT----CCCCEEEEEEEECCTTCSSCCCEEEEEEEEET--TEEEEEEEEEESSCEEEEEE-
T ss_pred             EEEeCCCCcceEEEEEEEEcc----CCCEEEEEEeeecCCCCCCCCceEEEEEEEEC--CEEEEEEEEEcCCcCEEEee-
Confidence            999999999999999999963    357899999999996 8999999999999993  58999998888777777665 


Q ss_pred             cccCceEEEeecceEEeeehhhh
Q 001003         1161 DFASHFFAICSNSFVFVFLFSFL 1183 (1192)
Q Consensus      1161 ~~~~~~~a~~~~~~~~~~~~~~~ 1183 (1192)
                       |+|+++|++ +++++||.|.--
T Consensus       894 -~~g~Lla~i-g~~l~vy~l~~~  914 (1158)
T 3ei3_A          894 -FNGKLLASI-NSTVRLYEWTTE  914 (1158)
T ss_dssp             -ETTEEEEEE-TTEEEEEEECTT
T ss_pred             -eCCEEEEEc-CCEEEEEECCCC
Confidence             999887776 589999999743
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1192
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 97.08
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 96.67
d1tbga_340 beta1-subunit of the signal-transducing G protein 94.78
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 93.33
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 93.18
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 93.01
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 92.34
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 91.92
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 87.25
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 86.44
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 84.23
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 83.86
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 82.81
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.08  E-value=0.23  Score=51.52  Aligned_cols=75  Identities=17%  Similarity=0.272  Sum_probs=52.4

Q ss_pred             EEEEEEcCCEEEEEEeCCcEEEEEecCCCceEeeccccccccCCCceeEEEeeccCCCCCcccccccccccccCcccccc
Q 001003          661 VLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAID  740 (1192)
Q Consensus       661 Iv~asi~dpyvlv~~~dg~i~~l~~d~~~~~l~~~~~~~l~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~  740 (1192)
                      |+|++..+.|++.+..||+|++|.......+..+.      .....|.++++..                          
T Consensus        16 itc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~------~H~~~V~~l~~s~--------------------------   63 (355)
T d1nexb2          16 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS------GHDGGVWALKYAH--------------------------   63 (355)
T ss_dssp             EEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEE------CCSSCEEEEEEET--------------------------
T ss_pred             EEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEE------CCCCCEEEEEEcC--------------------------
Confidence            67888899999999999999999876543322222      2345677775521                          


Q ss_pred             CCCCCCCCCCcEEEEEEecCCeEEEEECCCceeeEEe
Q 001003          741 GADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTV  777 (1192)
Q Consensus       741 ~~~~~~~~~~~~~l~v~~~~g~l~I~sLP~~~~v~~~  777 (1192)
                               .. +++.+-.+|.+.+|.+...+.....
T Consensus        64 ---------~~-~l~s~s~D~~i~iw~~~~~~~~~~~   90 (355)
T d1nexb2          64 ---------GG-ILVSGSTDRTVRVWDIKKGCCTHVF   90 (355)
T ss_dssp             ---------TT-EEEEEETTCCEEEEETTTTEEEEEE
T ss_pred             ---------CC-EEEEEeccccccccccccccccccc
Confidence                     12 4666778999999999876654433
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure