Citrus Sinensis ID: 001018

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------119
MDVERSSLCNCVVNFLLEEKYLLTAFELLQELLDDGRDAQAIRLKEFFSDPSHFPPDLITRFNSLRVADPQSLLEEKEALVEKLAITEYELRLAQEDVTKLKAELKKKSDSSLENLNESNENNHGNHGVEFQRQKRDISFSDLGPLKDIERKDLNCAVKEYLLLAGYRLTAMTFYEEVTDQNLDIWQNTPARVPDALRHYYYQYLSSTTEAAEEKIAMLRENESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGSHSVRNFATTNGDVIQSQPVERYEEEIKSLLKEIERLRAKSTNASDSLGSVYSESMQTEEKVVEVDEDKTVLAHPSVEVVNSEDAQSLATQTPDNNTAKQPNEVLQGESTSSLKENIASENSENVPNLNDESPLKDSGLPLQSDNASLEAASDKMGLGTIQILADALPKIVPYVLINHREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDADSLDPAHKEALEIIMKDRSGGTLETISKVMGAHLGITSSVTSFFGGGVGEGLLGKKEIAEQSAEPVHSPEPPPPAPAEDTRFMRIMRGNFVGDMLRGKAKTSEDTSRTQNQ
ccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHHHHHccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccHHHcccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccHHHHHcccccccccHHHccccccccccccHHccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHcccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHcccccEEccHHHccHHHccccccccHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHccccHEEEccccccccEEEHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHcccccccccccccccccccccccccccccccccccHcccHHHEEccccccHHHcccccccccccccccc
mdversslcncVVNFLLEEKYLLTAFELLQELLDDGRDAQAIRLKeffsdpshfppdlitrfnslrvadpqsLLEEKEALVEKLAITEYELRLAQEDVTKLKAELKKKSDSSLEnlnesnennhgnhgvefqrqkrdisfsdlgplkdierKDLNCAVKEYLLLAGYRLTAMTFYEEVTDqnldiwqntparvpDALRHYYYQYLSSTTEAAEEKIAMLRENESLLKVNERLNHEKESllktkeisdGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGshsvrnfattngdviqsqpvERYEEEIKSLLKEIERLRAkstnasdslgsvysesmQTEEKVVevdedktvlahpsvevvnsedaqslatqtpdnntakqpnevlqgestSSLKENiasensenvpnlndesplkdsglplqsdnasleaasdkmglGTIQILADALPKIVPYVLINHREELLPLIMCAIerhpdtstrdSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGElaefvrpeirDSLILSIVQQLVEDSATVVREAAARNLALLlplfpntdkyfKVEDLMFQLvcdpsgvvvETTFKELLPAVINWGSKLDHILRVLLSYILSsaqrcpplsgvegsVESHLRVLGERERWNLEVLLRMMAELLPFMqknaietcpfssvslseetvfpsSLLELYagghiewpafewmhvdcfpgLIQLacllpekedNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAvgdnanltffpstihsgirglkprtavGERLATMGVLPLLLagvlgapskhDQLADYLRKLLVEGtmkenhtvKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVtlgsdqnlnvkyASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYLLSKIFqlsavpssssdVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLkdadsldpAHKEALEIIMkdrsggtlETISKVMGAHlgitssvtsffgggvgegllgkkeiaeqsaepvhspeppppapaedtrFMRIMRGNFVgdmlrgkaktsedtsrtqnq
mdversslcnCVVNFLLEEKYLLTAFELLQELLDDGRDAQAIRLKeffsdpshfppdLITRFNSLRVADPQSLLEEKEALVEKLAITEYELRLAQEDVTKLKAELkkksdsslenlnesnennhgnhgvefqrqkrDISFSDLGPLKDIERKDLNCAVKEYLLLAGYRLTAMTFYEEVTDQNLDIWQNTPARVPDALRHYYYQYLSSTTEAAEEKIAMLRENESLLKVNERLNHEkesllktkeisdgqiSALTKSLEALHRDLKDKENLILDlkkttehqrreLNDCTAEITALKMHIEGShsvrnfattngdviqsqpveRYEEEIKSLLKEIERLrakstnasdslgsvysesMQTEEKVVEVDEDKTVLAHPSVEVVNSEDAQSLAtqtpdnntakqpnevlqgeSTSSLKENIAsensenvpnlndESPLKDSGLPLQSDNASLEAASDKMGLGTIQILADALPKIVPYVLINHREELLPLIMCAIERHPdtstrdslTHTLFnlikrpdekqrrIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFpstihsgirgLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYLLSKIfqlsavpssssdvmrRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDADSLDPAHKEALEIIMKDRSGGTLETISKVMGAHLGITSSVTSFFGGGVGEGLLGKKEIAEQsaepvhspeppppapaEDTRFMRIMRGNFVGDmlrgkaktsedtsrtqnq
MDVERSSLCNCVVNFLLEEKYlltafellqellDDGRDAQAIRLKEFFSDPSHFPPDLITRFNSLRVADPQSlleekealveklaITEYELRLAQEDVTKLKAELKKKSDsslenlnesnennhgnhgVEFQRQKRDISFSDLGPLKDIERKDLNCAVKEYLLLAGYRLTAMTFYEEVTDQNLDIWQNTPARVPDALRHYYYQYLSSTTEAAEEKIAMLRENESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGSHSVRNFATTNGDVIQSQPVERYeeeiksllkeieRLRAKSTNASDSLGSVYSESMQteekvvevdedktvLAHPSVEVVNSEDAQSLATQTPDNNTAKQPNEVLQGESTSSLKENIASENSENVPNLNDESPLKDSGLPLQSDNASLEAASDKMGLGTIQILADALPKIVPYVLINHREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREaaarnlalllplFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMgvlplllagvlgapSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEatvavvralavavPHTTERLRDYLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDADSLDPAHKEALEIIMKDRSGGTLETISKVMGAHLgitssvtsffgggvgegllgkkeiAEQSaepvhspeppppapaeDTRFMRIMRGNFVGDMLRGKAKTSEDTSRTQNQ
*******LCNCVVNFLLEEKYLLTAFELLQELLDDGRDAQAIRLKEFFSDPSHFPPDLITRFNSLRVADPQSLLEEKEALVEKLAITEYELRLAQ***********************************************LGPLKDIERKDLNCAVKEYLLLAGYRLTAMTFYEEVTDQNLDIWQNTPARVPDALRHYYYQYLSSTT************************************************************LILDL**********LNDCTAEITALKMHIEGSHSVRNFATTNG*V*********************************************************************************************************************************************GLGTIQILADALPKIVPYVLINHREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYLLSKIFQLSA***************NAFCESIRALDATELSATSVRDFLLPAIQNLLKDADSL***HKEALEIIMKDRSGGTLETISKVMGAHLGITSSVTSFFGGGVGEGLL************************************F*********************
******S*CNCVVNFLLEEKYLLTAFELLQELLDDG****AIR**EF****************************************EY*****************************************************************NCAVKEYLLLA************************************************************************************************************************************************************************************************************************************************************************************************DKMGLGTIQILADALPKIVPYVLINHREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDADSLDPAHKEA***************************************************************************MRGNFVG*******************
MDVERSSLCNCVVNFLLEEKYLLTAFELLQELLDDGRDAQAIRLKEFFSDPSHFPPDLITRFNSLRVADPQSLLEEKEALVEKLAITEYELRLAQEDVTKLKAELKKKSDSSLENLNESNENNHGNHGVEFQRQKRDISFSDLGPLKDIERKDLNCAVKEYLLLAGYRLTAMTFYEEVTDQNLDIWQNTPARVPDALRHYYYQYLSSTTEAAEEKIAMLRENESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGSHSVRNFATTNGDVIQSQPVERYEEEIKSLLKEIERLRAKSTNASDS*****************VDEDKTVLAHPSVEVVNSEDAQSLATQTPDNNTAKQPNEVL*********ENIASENSENVPNLNDESPLKDSGLPLQSDNASLEAASDKMGLGTIQILADALPKIVPYVLINHREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYLLSKIFQLSA************ERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDADSLDPAHKEALEIIMKDRSGGTLETISKVMGAHLGITSSVTSFFGGGVGEGLLGKKEIA****************PAEDTRFMRIMRGNFVGDMLR***************
****RSSLCNCVVNFLLEEKYLLTAFELLQELLDDGRDAQAIRLKEFFSDPSH*************VADPQSLLEEKEALVEKLAITEYELRLAQEDVTKLKAELKKK******************************SFSDLGPLKDIERKDLNCAVKEYLLLAGYRLTAMTFYEEVTDQNLDIWQNTPARVPDALRHYYYQYLSSTTEAAEEKIAMLRENESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGSHSVRNFATTNGDVIQSQPVERYEEEIKSLLKEIERLRAK**********************************************************************************************KDSGLPLQSDNASLEAASDKMGLGTIQILADALPKIVPYVLINHREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDADSLDPAHKEALEIIMKDRSGGTLETISKVMGAHLGITS*****************************************TRFMRIMRGNFVGDMLR***************
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MDVERSSLCNCVVNFLLEEKYLLTAFELLQELLDDGRDAQAIRLKEFFSDPSHFPPDLITRFNSLRVADPQSLLEEKEALVEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNHGNHGVEFQRQKRDISFSDLGPLKDIERKDLNCAVKEYLLLAGYRLTAMTFYEEVTDQNLDIWQNTPARVPDALRHYYYQYLSSTTEAAEEKIAMLRExxxxxxxxxxxxxxxxxxxxxKEISDGQxxxxxxxxxxxxxxxxxxxxxxxxxxxxTEHQRRELNDCTAEITALKMHIEGSHSVRNFATTNGDVIQSQPxxxxxxxxxxxxxxxxxxxxxxxxxxxxLGSVYSESMQTEEKVVEVDEDKTVLAHPSVEVVNSEDAQSLATQTPDNNTAKQPNEVLQGESTSSLKENIASENSENVPNLNDESPLKDSGLPLQSDNASLEAASDKMGLGTIQILADALPKIVPYVLINHREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDYLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDADSLDPAHKEALEIIMKDRSGGTLETISKVMGAHLGITSSVTSFFGGGVGEGLLGKKEIAEQSAEPVHSPEPPPPAPAEDTRFMRIMRGNFVGDMLRGKAKTSEDTSRTQNQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1188 2.2.26 [Sep-21-2011]
Q08BT51196 LisH domain and HEAT repe yes no 0.509 0.505 0.295 6e-80
Q148V71216 LisH domain and HEAT repe yes no 0.613 0.599 0.275 1e-75
Q6P6Y11189 LisH domain and HEAT repe yes no 0.530 0.529 0.283 2e-75
Q9P2601216 LisH domain and HEAT repe yes no 0.502 0.490 0.294 3e-73
>sp|Q08BT5|K1468_XENTR LisH domain and HEAT repeat-containing protein KIAA1468 homolog OS=Xenopus tropicalis PE=2 SV=1 Back     alignment and function desciption
 Score =  300 bits (767), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 200/676 (29%), Positives = 332/676 (49%), Gaps = 71/676 (10%)

Query: 459  GTIQILADALPKIVPYVLINHREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQ 518
            G +++L   LP IVP VL+  REEL+PLI+C    HP++  RD L H LFNLIKRPD++Q
Sbjct: 498  GVMKMLGRCLPHIVPNVLLAKREELIPLILCTACLHPESKERDQLLHILFNLIKRPDDEQ 557

Query: 519  RRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRD 578
            R++I+  CV  A++VG  R E ELLPQCWEQINH Y ERRLLVA+SCG+LA ++  EIR 
Sbjct: 558  RQMILTGCVAFARHVGPTRVEAELLPQCWEQINHKYPERRLLVAESCGDLAPYLPKEIRS 617

Query: 579  SLILSIVQQ-LVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVE 637
            SL+L+++QQ L+ED A +VREA  ++L +++    + DKY +  +L+   + DPS  VV 
Sbjct: 618  SLVLAMLQQMLMEDKADMVREAVIKSLGIIMGYIDDPDKYSQGFELLLTALGDPSERVVS 677

Query: 638  TTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNL 697
             T +  LPA   W  +L ++   L+  +LS  ++   L   E  ++ H           L
Sbjct: 678  ATHQVFLPAYAAWTMELGNLQSHLIPTLLSKIEKL--LKEGEHGLDEH----------KL 725

Query: 698  EVLLRMMAELLPFMQKNAIETCPFSS-------VSLSEETVFP----------------- 733
             + L  +  L+P +    ++  PF+S       V   E T FP                 
Sbjct: 726  HMYLSALQSLIPSLFATVLQNAPFTSKAKLQGEVPQIEVTRFPRPVSPLQDVATIIGSRE 785

Query: 734  --SSLLELY-----AGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAV 786
              + LL+LY       G   W +  W+     P LI++   +        +  ++F   +
Sbjct: 786  QLAVLLQLYDYQLEHEGTTGWESLLWVVNQLLPQLIEIVGRITVTSTASVHEFSRFFWRL 845

Query: 787  SKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLL 846
             + FG  +    + P F         L      I S           G  + T   +P+ 
Sbjct: 846  CRTFGKIFTNTKVKPQF------QEILRLSEENIDS---------TAGNGVLTKATVPIY 890

Query: 847  LAGVLGAPSKHDQ---LADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVF 903
              GVL   ++ +    L  +L  ++   ++         A  V     L T   +H ++ 
Sbjct: 891  ATGVLTCYNQEEDRKLLVGFLEDVMTMLSLSHAPLDSLKASFVE----LGTNPAYHELLL 946

Query: 904  NILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDA 963
             +LW  VV ++  ++  AA + +++V  +N  + + +V+PAL+TL SD  ++V+ A++ A
Sbjct: 947  TVLWYGVVHTSALVRCTAARMFELLVKGVNETLVAQRVVPALITLSSDPEISVRIATVPA 1006

Query: 964  FGAVAQHFKNDMIVDKIRVQMDAFLED----GSHEATVAVVRALAVAVPHTTERLR-DYL 1018
            FG + +      +++++++Q+ +FLED      H     ++R      P+   R R D++
Sbjct: 1007 FGTIMETVTQRELLERVKMQLASFLEDPQYQDQHSLQTEIIRTFGRVGPNAEPRFRDDFV 1066

Query: 1019 LSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDAD 1078
            L  + +LS V +  S   +R + A    E+  AL    +S   + +  LP ++ L  D +
Sbjct: 1067 LPHLHKLSFVNNQQSVDSKRLDIATHLFEAYSALSCCFISEELMMNHFLPGLRCLRTDME 1126

Query: 1079 SLDPAHKEALEIIMKD 1094
             L P H+  L  ++K+
Sbjct: 1127 QLSPEHEVILSSMIKE 1142

Xenopus tropicalis (taxid: 8364)
>sp|Q148V7|K1468_MOUSE LisH domain and HEAT repeat-containing protein KIAA1468 OS=Mus musculus GN=Kiaa1468 PE=1 SV=1 Back     alignment and function description
>sp|Q6P6Y1|K1468_DANRE LisH domain and HEAT repeat-containing protein KIAA1468 homolog OS=Danio rerio GN=zgc:66014 PE=2 SV=1 Back     alignment and function description
>sp|Q9P260|K1468_HUMAN LisH domain and HEAT repeat-containing protein KIAA1468 OS=Homo sapiens GN=KIAA1468 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1188
2254521121184 PREDICTED: lisH domain and HEAT repeat-c 0.989 0.993 0.775 0.0
4494902011190 PREDICTED: LOW QUALITY PROTEIN: lisH dom 0.981 0.979 0.712 0.0
2240793691140 predicted protein [Populus trichocarpa] 0.953 0.993 0.718 0.0
3564996101184 PREDICTED: lisH domain and HEAT repeat-c 0.988 0.991 0.703 0.0
4494420681249 PREDICTED: LOW QUALITY PROTEIN: lisH dom 0.978 0.931 0.677 0.0
2555743301167 conserved hypothetical protein [Ricinus 0.964 0.982 0.693 0.0
2978117591179 hypothetical protein ARALYDRAFT_488471 [ 0.981 0.988 0.691 0.0
223268361180 HEAT repeat-containing protein [Arabidop 0.986 0.993 0.690 0.0
97558311189 putative protein [Arabidopsis thaliana] 0.986 0.985 0.685 0.0
2960872451025 unnamed protein product [Vitis vinifera] 0.852 0.988 0.776 0.0
>gi|225452112|ref|XP_002281005.1| PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1816 bits (4705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 922/1189 (77%), Positives = 1035/1189 (87%), Gaps = 13/1189 (1%)

Query: 3    VERSSLCNCVVNFLLEEKYLLTAFELLQELLDDGRDAQAIRLKEFFSDPSHFPPDLITRF 62
            VER+SLCNCVVNFLLEEKYLL+AFELL ELL+DGR+AQAIRLKEFFSDPSHFPPD I+RF
Sbjct: 4    VERASLCNCVVNFLLEEKYLLSAFELLHELLEDGREAQAIRLKEFFSDPSHFPPDQISRF 63

Query: 63   NSLRVADPQSLLEEKEALVEKLAITEYELRLAQEDVTKLKAELKKKSDSSLENLNESNEN 122
            NSLRVADPQSLLEEKEAL EKLAI+ YELRLAQED+ KLK EL+KK+D  L N ++SN +
Sbjct: 64   NSLRVADPQSLLEEKEALEEKLAISGYELRLAQEDILKLKTELEKKADF-LPNSSKSNSD 122

Query: 123  NHGNHGVEFQRQKRDISFSDLGPLKDIERKDLNCAVKEYLLLAGYRLTAMTFYEEVTDQN 182
               +HG + QRQKRD S+SDLGPLKD ER+DLNCAVKEYLLLAGYRLTAMTFYEEV DQN
Sbjct: 123  VSVDHGQDIQRQKRDASYSDLGPLKDNERRDLNCAVKEYLLLAGYRLTAMTFYEEVIDQN 182

Query: 183  LDIWQNTPARVPDALRHYYYQYLSSTTEAAEEKIAMLRENESLLKVNERLNHEKESLLKT 242
            LD+WQNTPA VPDALRHYYYQYLSST EAAEEKIAMLRENESLLK NE LNHEKE LLK 
Sbjct: 183  LDVWQNTPACVPDALRHYYYQYLSSTAEAAEEKIAMLRENESLLKANENLNHEKECLLKN 242

Query: 243  KEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIEGS 302
            K+++DGQI ALTKS EAL +DLKD+ENL+  LK++ EHQR++LNDC AEIT+LKMHIEG 
Sbjct: 243  KDLADGQIKALTKSSEALQKDLKDRENLVQVLKQSLEHQRKDLNDCRAEITSLKMHIEGY 302

Query: 303  HSVRNFATTNGDVIQSQPVERYEEEIKSLLKEIERLRAKSTNASDSLGS--VYSESMQTE 360
             S R++AT++ D +QS  +ERY+EEIKSL  E+E L+AK++ A+D+L S     ES+Q E
Sbjct: 303  RSGRSWATSDVDDVQSS-LERYKEEIKSLQMEMESLKAKNSIATDALDSSNCGKESIQGE 361

Query: 361  EKVVEVDEDKTVLAH---PSVEVVNSEDAQSLATQTPDNNTAKQPNEVLQGESTSSLKEN 417
            E VVE+ EDKTV++H    +  V+ ++DA  LA QT D+N  K+P EV Q    SS  EN
Sbjct: 362  ENVVEIHEDKTVISHQVDTTSGVLENQDAPLLACQTSDDNM-KKPEEVAQELLISSSSEN 420

Query: 418  IASENSENVPNLNDESPLKDSGLPLQSDNASLEAASDKMGLGTIQILADALPKIVPYVLI 477
              + N  N P  N E P ++S + L+SDN   +  S+K GLGTIQIL+DALPKIVPYVLI
Sbjct: 421  GTAGNVVNAPKQNGEPPPEESEV-LKSDNIGGKIVSEKTGLGTIQILSDALPKIVPYVLI 479

Query: 478  NHREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMR 537
            NHREELLPLIMCAIERHPD+STRDSLTHTLFNLIKRPDE+QRRIIMDACV LAKNVGEMR
Sbjct: 480  NHREELLPLIMCAIERHPDSSTRDSLTHTLFNLIKRPDEQQRRIIMDACVNLAKNVGEMR 539

Query: 538  TEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVR 597
            TE ELLPQCWEQINH+YEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQL+EDS TVVR
Sbjct: 540  TETELLPQCWEQINHIYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLIEDSGTVVR 599

Query: 598  EAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHI 657
            +AAA NLALLLPLFPN DKYFKVE+LMFQLVCDPSGVVVETT KEL+PAVINWG+KLDHI
Sbjct: 600  DAAAHNLALLLPLFPNMDKYFKVEELMFQLVCDPSGVVVETTLKELVPAVINWGNKLDHI 659

Query: 658  LRVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIE 717
            LR+LLS+IL S+QRCPPLSGVEGSVESHL VLGERERWN++VLLRM+ ELLPF+ + AIE
Sbjct: 660  LRILLSHILGSSQRCPPLSGVEGSVESHLHVLGERERWNVDVLLRMLTELLPFVHQKAIE 719

Query: 718  TCPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRN 777
            TCPF +VS S  T+F +SLLELYAGGHIEWPAFEWMH+DCFP LIQLACLLP+KEDNLRN
Sbjct: 720  TCPFPTVSESMGTLFSTSLLELYAGGHIEWPAFEWMHIDCFPSLIQLACLLPQKEDNLRN 779

Query: 778  RITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERL 837
            RITKFLLAVS++FGDSYLTHIMLPVF+VA+GDNA+LTFFPSTIHS I+GL+P+TA+ ERL
Sbjct: 780  RITKFLLAVSERFGDSYLTHIMLPVFLVAIGDNADLTFFPSTIHSVIKGLRPKTAIAERL 839

Query: 838  ATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEE 897
            ATM VLPLLLAGVLGAP KH+QL +YLR LLV+GT+KE+   K NAEIV+AVRFLCTFEE
Sbjct: 840  ATMCVLPLLLAGVLGAPCKHEQLVEYLRNLLVQGTVKESQPTKRNAEIVDAVRFLCTFEE 899

Query: 898  HHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVK 957
            HH M+FNILWEMVVSSNI+MKI+AANLLKVIVPYI+AKV S  VLPALVTLGSDQNLNVK
Sbjct: 900  HHGMIFNILWEMVVSSNIEMKISAANLLKVIVPYIDAKVASTHVLPALVTLGSDQNLNVK 959

Query: 958  YASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRDY 1017
            YASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEAT+AVVRAL VA+PHTT++LRDY
Sbjct: 960  YASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEATIAVVRALVVAIPHTTDKLRDY 1019

Query: 1018 LLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDA 1077
            LLSKIFQ + +PS +SDVMRRRERANAFCESIRALDAT+L ATSVR+ LLPAIQNLLKD 
Sbjct: 1020 LLSKIFQFTTMPSPTSDVMRRRERANAFCESIRALDATDLPATSVRELLLPAIQNLLKDL 1079

Query: 1078 DSLDPAHKEALEIIMKDRSGGTLETISKVMGAHLGITSSVTSFFGGGVGEGLLGKKEIAE 1137
            D+LDPAHKEALEII+K+RSGGTLE ISKVMGAHLGI SSVTS FG G   GLLGKK+  +
Sbjct: 1080 DALDPAHKEALEIILKERSGGTLEAISKVMGAHLGIASSVTSLFGEG---GLLGKKDSGD 1136

Query: 1138 QSAEPVHSPEPPPPAPAEDTRFMRIMRGNFVGDMLRGKAKTSEDTSRTQ 1186
               EPV SP   PP PAEDTRFMRIMRGNF  DMLR KAK  EDTS  Q
Sbjct: 1137 PPPEPVESPRAVPPPPAEDTRFMRIMRGNFT-DMLRSKAKNQEDTSTGQ 1184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449490201|ref|XP_004158535.1| PREDICTED: LOW QUALITY PROTEIN: lisH domain and HEAT repeat-containing protein KIAA1468 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|224079369|ref|XP_002305839.1| predicted protein [Populus trichocarpa] gi|222848803|gb|EEE86350.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356499610|ref|XP_003518631.1| PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog [Glycine max] Back     alignment and taxonomy information
>gi|449442068|ref|XP_004138804.1| PREDICTED: LOW QUALITY PROTEIN: lisH domain and HEAT repeat-containing protein KIAA1468 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|255574330|ref|XP_002528079.1| conserved hypothetical protein [Ricinus communis] gi|223532540|gb|EEF34329.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297811759|ref|XP_002873763.1| hypothetical protein ARALYDRAFT_488471 [Arabidopsis lyrata subsp. lyrata] gi|297319600|gb|EFH50022.1| hypothetical protein ARALYDRAFT_488471 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|22326836|ref|NP_197125.2| HEAT repeat-containing protein [Arabidopsis thaliana] gi|17978919|gb|AAL47427.1| AT5g16210/T21H19_130 [Arabidopsis thaliana] gi|332004878|gb|AED92261.1| HEAT repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9755831|emb|CAC01862.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|296087245|emb|CBI33619.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1188
TAIR|locus:21814071180 AT5G16210 [Arabidopsis thalian 0.988 0.994 0.616 0.0
MGI|MGI:19228321216 2310035C23Rik "RIKEN cDNA 2310 0.282 0.276 0.351 7.7e-70
DICTYBASE|DDB_G02897551169 DDB_G0289755 "LisH domain and 0.240 0.244 0.389 4.4e-67
UNIPROTKB|F1MQN0695 PPP2R1B "Uncharacterized prote 0.073 0.125 0.275 0.00025
ZFIN|ZDB-GENE-050417-469234 zgc:112992 "zgc:112992" [Danio 0.093 0.474 0.267 0.00045
RGD|1304764601 Ppp2r1b "protein phosphatase 2 0.069 0.138 0.265 0.00083
FB|FBgn0260439591 Pp2A-29B "Protein phosphatase 0.044 0.089 0.320 0.00084
TAIR|locus:2181407 AT5G16210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3551 (1255.1 bits), Expect = 0., P = 0.
 Identities = 735/1192 (61%), Positives = 852/1192 (71%)

Query:     1 MDVERSSLCNCVVNFLLEEKYXXXXXXXXXXXXDDGRDAQAIRLKEFFSDPSHFPPDLIT 60
             MD ERSSLCN  VNFL+EE Y            DDGRDAQAIRLKEFFSDPS FPPD I+
Sbjct:     1 MDAERSSLCNFFVNFLMEENYLLTAFELLHELLDDGRDAQAIRLKEFFSDPSRFPPDQIS 60

Query:    61 RFNSLRVADPQSXXXXXXXXXXXXXITEYELRLAQEDVTKLKAELKKKSDXXXXXXXXXX 120
             R+NS+RVADPQS             I+EYE RLAQED+ +LK E +KKS           
Sbjct:    61 RYNSIRVADPQSLLEEKEALAEKLAISEYEFRLAQEDIARLKTEGQKKSVPSIDKSEEMD 120

Query:   121 XXXXXXXXVEFQRQKRDISFSDLGPLKDIERKDLNCAVKEYLLLAGYRLTAMTFYEEVTD 180
                      E QR+K+D SF+D+GPLK+ ER+DLNCAVKEYLLLAGYRLTAMTFYEEVTD
Sbjct:   121 SDEFGGNRPEIQRKKKDFSFTDIGPLKNNERQDLNCAVKEYLLLAGYRLTAMTFYEEVTD 180

Query:   181 QNLDIWQNTPARVPDALRHYYYQYLSSTTEAAEEKIAMLRENESLLKVNERLNHEKESLL 240
             QNLD+WQ++PA VPDALR+YYYQYLSST+EAAEEKIAML+ENESL K  ERL+ EK+ LL
Sbjct:   181 QNLDVWQDSPAHVPDALRYYYYQYLSSTSEAAEEKIAMLQENESLKKEIERLSKEKDGLL 240

Query:   241 KTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITALKMHIE 300
             K+KE  + QI A  KS E+L +DL+D+E  +  LK+++EHQRR LNDC AEIT+LKMHIE
Sbjct:   241 KSKENFEEQIGAFNKSTESLQKDLRDREKQVQSLKQSSEHQRRNLNDCRAEITSLKMHIE 300

Query:   301 GSHSVRNFATTNGDVI--QSQPVERYXXXXXXXXXXXXRLRAKSTNASDSLGSVYSESMQ 358
             GS + +  +   GD +  QS+ VE                  +      S  S+ +E   
Sbjct:   301 GSRAGQYVSLNEGDPVKLQSKEVEEQISTLSEEVVNPT---VEKDGGLISKVSISAEKGH 357

Query:   359 XXXXXXXXXXXXXXLAHPSVEVVNSEDAQSLATQTPDNNTAKQPNEVLQGESTSSLKENI 418
                           +     EV       S A    +N T +   EV      S    N 
Sbjct:   358 IQTEDDMVVEEVKNIIADQREVAGEAGNISYA----NNGTLENQKEV-SNYLLSPSNGNF 412

Query:   419 ASENSENVPNLNDESPLKDSGLPLQSDNASLEAASDKMGLGTIQILADALPKIVPYVLIN 478
             +  +  ++  + D    +DS    +SDNA+ EAAS++MGLGTIQILADALP IVPYVLIN
Sbjct:   413 SPRDLGSILKV-DPGIGRDSNS--KSDNANGEAASEEMGLGTIQILADALPNIVPYVLIN 469

Query:   479 HREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRT 538
             HREELLPL+MCAIERHP +STRDSLTHTLFNLIKRPDE+QRRIIMDACV+L++NVGEMRT
Sbjct:   470 HREELLPLMMCAIERHPVSSTRDSLTHTLFNLIKRPDEQQRRIIMDACVSLSRNVGEMRT 529

Query:   539 EMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVRE 598
             E ELLPQCWEQINH YEERRLLVAQSCGELAE+VRPEIRDSLILSIVQQL+EDSATVVRE
Sbjct:   530 ETELLPQCWEQINHTYEERRLLVAQSCGELAEYVRPEIRDSLILSIVQQLIEDSATVVRE 589

Query:   599 XXXXXXXXXXXXFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHIL 658
                         FPNTDKYFKVE++MFQL+CDPSG+VVETT KELLPAVI WG++LDHIL
Sbjct:   590 AAAHNLALLLPLFPNTDKYFKVEEMMFQLICDPSGLVVETTLKELLPAVIKWGNRLDHIL 649

Query:   659 RVLLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIET 718
             R LLS+ LSSAQ CPPLSGVEGS+ESHLRVLGERERWN++VLLRM+ ELLP + + A+ T
Sbjct:   650 RGLLSHTLSSAQHCPPLSGVEGSLESHLRVLGERERWNIDVLLRMLMELLPAIHQKAMTT 709

Query:   719 CPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNR 778
             CPFSS+S SEE+ F  SLLE+YA G  EWP FEWMHVDCF  L+QLAC+LP+KED+LRNR
Sbjct:   710 CPFSSISKSEESAFSVSLLEIYAEGRSEWPMFEWMHVDCFANLLQLACMLPQKEDHLRNR 769

Query:   779 ITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDN-ANLTFFPSTIHSGIRGLKPRTAVGERL 837
             ITKFLLAVS++FG SYLTHI LPVF+VA GD+ A+L F PS IH  I+GLKPRTAV  RL
Sbjct:   770 ITKFLLAVSERFGSSYLTHIELPVFLVAAGDDEADLRFLPSAIHPRIKGLKPRTAVANRL 829

Query:   838 ATMXXXXXXXXXXXXXXSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEE 897
             AT+              SK ++L  +LR+LLVE   KEN + K N E+++AVRFLCTFE 
Sbjct:   830 ATLCILPLLLAGVLGAPSKREELTIFLRQLLVESKTKENQSSKHNNEVLDAVRFLCTFEV 889

Query:   898 HHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVK 957
             HH M+F ILWEMVV S  ++KINAA LLK IVPYI+AKV S  VLPAL+TLGSDQNLNVK
Sbjct:   890 HHNMIFGILWEMVVDSTAELKINAAKLLKTIVPYIDAKVASANVLPALITLGSDQNLNVK 949

Query:   958 YASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEXXXXXXXXXXXXXPHTTERLRDY 1017
             YASIDAFG+VAQHFK DMIVDKI VQMDAF+EDGSHE             PHTTERLRDY
Sbjct:   950 YASIDAFGSVAQHFKVDMIVDKILVQMDAFMEDGSHEAIIAVIRALLVAIPHTTERLRDY 1009

Query:  1018 LLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDA 1077
             LLSKI QLSA PSSS+DV RRRERANAFCE+IRALDAT+LS TSV+++LLPAIQNLLKD 
Sbjct:  1010 LLSKILQLSASPSSSTDVNRRRERANAFCEAIRALDATDLSQTSVKEYLLPAIQNLLKDP 1069

Query:  1078 DSLDPAHKEALEIIMKDRSGGTLETISKVMGAHLXXXXXXXXXXXXXXXXXXXXXXXXAE 1137
             D+LDPAHKEALEIIMK+RSGGT E ISK MGAHL                          
Sbjct:  1070 DALDPAHKEALEIIMKERSGGTFEAISKAMGAHLGIASSVTSLFGEGGLLGKKEATESTA 1129

Query:  1138 QSXXXXXXXXX--XXXXXXXDTRFMRIMRGNFVGDMLRGKAKTSEDTSRTQN 1187
                                 DTRF RIMRGNF  +MLR KAKT ++T + QN
Sbjct:  1130 PGSPTGQGPESPKVVAAASEDTRFRRIMRGNFT-EMLRSKAKTQDET-QPQN 1179
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
MGI|MGI:1922832 2310035C23Rik "RIKEN cDNA 2310035C23 gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289755 DDB_G0289755 "LisH domain and HEAT repeat-containing protein KIAA1468" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1MQN0 PPP2R1B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050417-469 zgc:112992 "zgc:112992" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1304764 Ppp2r1b "protein phosphatase 2, regulatory subunit A, beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0260439 Pp2A-29B "Protein phosphatase 2A at 29B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00038273001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (1154 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1188
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.002
pfam13166713 pfam13166, AAA_13, AAA domain 0.003
pfam05483787 pfam05483, SCP-1, Synaptonemal complex protein 1 ( 0.004
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 43.2 bits (102), Expect = 0.001
 Identities = 65/310 (20%), Positives = 112/310 (36%), Gaps = 21/310 (6%)

Query: 61  RFNSLRVADPQSLLEEKEALVEKLAITEYELRL----AQEDVTKLKAELKKKSDSSLENL 116
                 +   ++ L   E L+E+L     EL       + ++  L+ EL++   S LE L
Sbjct: 684 EKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQ-SRLEEL 742

Query: 117 NESNENNHGNHGVEFQRQKRDISFSDLGPLKDIERKDLNCAVKEYLLLAGYRLTAMTFYE 176
            E  E          +R +      +L  L++     L   ++E           +   E
Sbjct: 743 EEELEELEEELEELQERLEEL--EEELESLEE-ALAKLKEEIEELEEKRQALQEELEELE 799

Query: 177 EV-TDQNLDIWQNTPARVPDALRHYYYQYLSSTTEAAEEKIAMLRENESLLKVNERLNHE 235
           E   +    +            R    + L    E  EE+I  L E     K++E L  E
Sbjct: 800 EELEEAERRLDALERELESLEQRR---ERLEQEIEELEEEIEELEE-----KLDE-LEEE 850

Query: 236 KESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRRELNDCTAEITAL 295
            E L K  E    ++  L    E L  +LK+ E    +L++       EL +   EI  L
Sbjct: 851 LEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910

Query: 296 KMHIEGSHSVRNFATTNGDVIQSQPVERYEEEIKSLLKEIERLRAKSTNASDSLGSVYSE 355
           +  +E   +           ++    E  EE   +L  E+ER   +     ++LG V   
Sbjct: 911 RERLEELEAKLERLEVELPELE---EELEEEYEDTLETELEREIERLEEEIEALGPVNLR 967

Query: 356 SMQTEEKVVE 365
           +++  E+V E
Sbjct: 968 AIEEYEEVEE 977

Length = 1163
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain Back     alignment and domain information
>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1188
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 100.0
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.56
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.39
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.32
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 99.09
PRK09687280 putative lyase; Provisional 99.05
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.05
PRK09687280 putative lyase; Provisional 98.98
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.95
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.89
KOG1242569 consensus Protein containing adaptin N-terminal re 98.87
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 98.82
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.78
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 98.73
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.68
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.67
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 98.66
PTZ00429746 beta-adaptin; Provisional 98.65
PTZ00429 746 beta-adaptin; Provisional 98.63
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.54
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.52
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.5
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.42
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.41
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.28
KOG1242569 consensus Protein containing adaptin N-terminal re 98.27
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.17
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.14
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.11
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 97.98
KOG1243690 consensus Protein kinase [General function predict 97.94
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.76
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.72
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 97.72
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.71
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.7
KOG2137700 consensus Protein kinase [Signal transduction mech 97.68
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.62
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 97.53
KOG2259 823 consensus Uncharacterized conserved protein [Funct 97.49
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.3
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 97.15
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 97.12
KOG2137 700 consensus Protein kinase [Signal transduction mech 96.98
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.94
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.93
KOG2259823 consensus Uncharacterized conserved protein [Funct 96.72
COG1413335 FOG: HEAT repeat [Energy production and conversion 96.6
KOG1243690 consensus Protein kinase [General function predict 96.54
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 96.53
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.52
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 96.48
KOG0413 1529 consensus Uncharacterized conserved protein relate 96.41
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 96.35
TIGR02270410 conserved hypothetical protein. Members are found 96.21
KOG0212675 consensus Uncharacterized conserved protein [Funct 96.19
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 96.19
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 96.17
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 95.91
PF05004309 IFRD: Interferon-related developmental regulator ( 95.8
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 95.41
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 95.37
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 95.19
KOG0212675 consensus Uncharacterized conserved protein [Funct 95.13
PF0851327 LisH: LisH; InterPro: IPR013720 The LisH motif is 94.84
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 94.78
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 94.76
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 94.69
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 94.64
COG5096 757 Vesicle coat complex, various subunits [Intracellu 94.64
KOG4653982 consensus Uncharacterized conserved protein [Funct 94.57
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 94.33
COG1413335 FOG: HEAT repeat [Energy production and conversion 94.31
KOG2956516 consensus CLIP-associating protein [General functi 94.22
TIGR02270410 conserved hypothetical protein. Members are found 93.95
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 93.8
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 93.41
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 93.23
KOG2062929 consensus 26S proteasome regulatory complex, subun 93.17
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 93.05
KOG1820 815 consensus Microtubule-associated protein [Cytoskel 92.93
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 92.92
KOG2025892 consensus Chromosome condensation complex Condensi 92.52
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 92.48
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 92.47
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 92.34
KOG4653982 consensus Uncharacterized conserved protein [Funct 92.23
KOG1820 815 consensus Microtubule-associated protein [Cytoskel 92.23
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 91.86
PF05804708 KAP: Kinesin-associated protein (KAP) 91.64
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 91.32
PF05004309 IFRD: Interferon-related developmental regulator ( 91.19
smart0066734 LisH Lissencephaly type-1-like homology motif. Alp 90.7
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 90.7
KOG12481176 consensus Uncharacterized conserved protein [Funct 90.69
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 90.46
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 90.44
KOG0567289 consensus HEAT repeat-containing protein [General 90.1
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 89.91
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 89.89
KOG2025 892 consensus Chromosome condensation complex Condensi 89.77
COG5096757 Vesicle coat complex, various subunits [Intracellu 89.51
KOG4224550 consensus Armadillo repeat protein VAC8 required f 89.5
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 89.38
COG5218885 YCG1 Chromosome condensation complex Condensin, su 89.16
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 88.65
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 88.23
KOG2956516 consensus CLIP-associating protein [General functi 87.73
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 87.35
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 87.19
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 86.11
PF05804708 KAP: Kinesin-associated protein (KAP) 85.72
KOG4224550 consensus Armadillo repeat protein VAC8 required f 85.56
smart00638574 LPD_N Lipoprotein N-terminal Domain. 83.96
KOG2032533 consensus Uncharacterized conserved protein [Funct 83.48
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 83.37
COG5116926 RPN2 26S proteasome regulatory complex component [ 82.7
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 82.65
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 82.49
KOG2032533 consensus Uncharacterized conserved protein [Funct 82.34
PHA0262961 A-type inclusion body protein; Provisional 82.23
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 81.8
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 81.76
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 81.46
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 81.36
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 81.14
KOG04141251 consensus Chromosome condensation complex Condensi 80.65
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-53  Score=519.76  Aligned_cols=747  Identities=20%  Similarity=0.188  Sum_probs=596.8

Q ss_pred             HHhhhcCCCCCCCccccccCCCCCCCchhHHHhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHhhhccCcccccccCCCCC
Q 001018           44 LKEFFSDPSHFPPDLITRFNSLRVADPQSLLEEKEALVEKLAITEYELRLAQEDVTKLKAELKKKSDSSLENLNESNENN  123 (1188)
Q Consensus        44 Lr~fFsnp~~f~~~~~~r~~s~~~~D~~~~~~~~~~~~ekvavle~ELR~a~e~I~~Lr~~l~~~~~~~~~~~~~~~~~~  123 (1188)
                      .+++|..+++|+++.++|++.+..+++.-+..    -+...|+-.|+.+.++..+......-.+....+. ..+..+...
T Consensus         3 ~k~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~   77 (759)
T KOG0211|consen    3 AKELRHIFSNLGSEKISRANEIRLVPSLILFC----PDIPAAVDKVQFPLFQKVTEDQENQVQKKSVASS-FKSLEDDPN   77 (759)
T ss_pred             hhhhccccccccchhhhhhhhhhcCCchHhhc----CChHHHHHHHhhhhhhHHHhhcccccccCCcchh-hcccccCcc
Confidence            58899999999999999999999999999888    7789999999999999999877665554433322 111110000


Q ss_pred             CCCCCcccccccccccccCCCCCChhhhhHhHHHHHHHHHHcCCcccceeccccccCCCCCCCCCCCCCCChHHHHHHHH
Q 001018          124 HGNHGVEFQRQKRDISFSDLGPLKDIERKDLNCAVKEYLLLAGYRLTAMTFYEEVTDQNLDIWQNTPARVPDALRHYYYQ  203 (1188)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~ikp~E~r~LN~lv~eYLl~~~Ykltsitf~dE~~dqd~e~W~dv~~~~P~~L~~~yr~  203 (1188)
                      -....+ +.-..+..+..+-.+.....++.-|..+..|....  |+..|+|..|+.+++++.|.+...+.+..+..+|.+
T Consensus        78 ~~~~~~-ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~t--r~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~  154 (759)
T KOG0211|consen   78 EDSLYP-IAVLIDELSNTDIQLRLNSGRKLSNLALALGVERT--RLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGP  154 (759)
T ss_pred             cccccc-HHHHhhccCchhhhhhhhhhccccchhhhcccchh--hhhhhhHHHHhccchhHHHHHHHHHhcccchhccch
Confidence            001111 33344455555667788889999999999999988  999999999999999999999988888777778888


Q ss_pred             hhccchHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhcchhhhhhhhhhHHHHhhhhhhHHHHHHHHHhhHHHHHH
Q 001018          204 YLSSTTEAAEEKIAMLRENESLLKVNERLNHEKESLLKTKEISDGQISALTKSLEALHRDLKDKENLILDLKKTTEHQRR  283 (1188)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (1188)
                      ++.|......+.++...||+...|..|.|....+.+.                                   |+      
T Consensus       155 ~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~-----------------------------------~~------  193 (759)
T KOG0211|consen  155 EYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLP-----------------------------------KE------  193 (759)
T ss_pred             hHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcC-----------------------------------hH------
Confidence            8888888888888877776544444333332111000                                   00      


Q ss_pred             HhhhhHHHHhhhhhhhccccccccccccCCCcccCchhhhhHHHHHHHHHHHHHHhhhccCCCCCCCcccccccccchhh
Q 001018          284 ELNDCTAEITALKMHIEGSHSVRNFATTNGDVIQSQPVERYEEEIKSLLKEIERLRAKSTNASDSLGSVYSESMQTEEKV  363 (1188)
Q Consensus       284 ~l~~~~~e~~~l~~~ie~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (1188)
                       .                                      ..++-..+      ++.   .+                  
T Consensus       194 -~--------------------------------------~~~~lv~l------~~~---l~------------------  207 (759)
T KOG0211|consen  194 -K--------------------------------------LREHLVPL------LKR---LA------------------  207 (759)
T ss_pred             -H--------------------------------------HHHHHHHH------HHH---cc------------------
Confidence             0                                      00000000      000   00                  


Q ss_pred             hccccccccccCCcccccCccccccccccCCCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCCCcCCCCCCc
Q 001018          364 VEVDEDKTVLAHPSVEVVNSEDAQSLATQTPDNNTAKQPNEVLQGESTSSLKENIASENSENVPNLNDESPLKDSGLPLQ  443 (1188)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (1188)
                                       .+  ++.+                                                       
T Consensus       208 -----------------~~--d~~~-------------------------------------------------------  213 (759)
T KOG0211|consen  208 -----------------TG--DWFQ-------------------------------------------------------  213 (759)
T ss_pred             -----------------ch--hhhh-------------------------------------------------------
Confidence                             00  0000                                                       


Q ss_pred             cccchhhhhhcccchhHHHHHHhhhcccchhcchhhHHhHhhHHHHHhhcCCChhhHHHHHHHHHHhhcCCCHHHHHHHH
Q 001018          444 SDNASLEAASDKMGLGTIQILADALPKIVPYVLINHREELLPLIMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIM  523 (1188)
Q Consensus       444 ~~~~~~~~~~~~~~~~~v~lls~~lP~Ivp~V~~~~R~ellPli~~aa~~h~~~~~R~~Ll~ll~nLiKdddp~vRr~aa  523 (1188)
                                  +..++||+++.+|++.-                       +..+|.+++.++..+|+|++||||++++
T Consensus       214 ------------sr~sacglf~~~~~~~~-----------------------~~~vk~elr~~~~~lc~d~~~~Vr~~~a  258 (759)
T KOG0211|consen  214 ------------SRLSACGLFGKLYVSLP-----------------------DDAVKRELRPIVQSLCQDDTPMVRRAVA  258 (759)
T ss_pred             ------------cchhhhhhhHHhccCCC-----------------------hHHHHHHHHHHHHhhccccchhhHHHHH
Confidence                        12448899998887754                       3558999999999999999999999999


Q ss_pred             HHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChh-hhhhhhHHHHHHhhcCCcHHHHHHHHH
Q 001018          524 DACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPE-IRDSLILSIVQQLVEDSATVVREAAAR  602 (1188)
Q Consensus       524 ~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e-~r~slLL~~LqqL~eD~e~~VR~aAAk  602 (1188)
                      +.|+.||+.++.+.+.++++|.+..+.+|++|.||+++.++|+.+.+++... ...+.+.+.+.++.+|.+|+||+++++
T Consensus       259 ~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~  338 (759)
T KOG0211|consen  259 SNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVAD  338 (759)
T ss_pred             hhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999877 777778999999999999999999999


Q ss_pred             HHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccchHHHHHHHHHHHhhhhccCCCc--cccch
Q 001018          603 NLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSAQRCPPL--SGVEG  680 (1188)
Q Consensus       603 sL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll~~L~~~v~~lp~~--~~v~~  680 (1188)
                      .+..+.+.++++-...+..+.+..+++|.+++||.+.+... ..++...+...+. ....+.+++.++.+.++  .+|+.
T Consensus       339 ~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~-~~l~~~l~~~~~~-~i~~~~ilp~~~~lv~d~~~~vr~  416 (759)
T KOG0211|consen  339 KFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKV-QKLACYLNASCYP-NIPDSSILPEVQVLVLDNALHVRS  416 (759)
T ss_pred             hhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcch-HHHhhhcCccccc-ccchhhhhHHHHHHHhcccchHHH
Confidence            99999999999656678899999999999999999998876 6666655421110 11122333444555554  67777


Q ss_pred             hhhhhh----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccchh-hhhhhhcCCCCccchhhHHh
Q 001018          681 SVESHL----RVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPSS-LLELYAGGHIEWPAFEWMHV  755 (1188)
Q Consensus       681 ~la~~l----~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~~~-ll~l~~~~~~~w~~~~wl~~  755 (1188)
                      ++++..    +.+|++.         ++..++|.+...+.        +++++|+++.. .+..+ ...++|+|++|+++
T Consensus       417 a~a~~~~~~~p~~~k~~---------ti~~llp~~~~~l~--------de~~~V~lnli~~ls~~-~~v~~v~g~~~~s~  478 (759)
T KOG0211|consen  417 ALASVITGLSPILPKER---------TISELLPLLIGNLK--------DEDPIVRLNLIDKLSLL-EEVNDVIGISTVSN  478 (759)
T ss_pred             HHhccccccCccCCcCc---------CccccChhhhhhcc--------hhhHHHHHhhHHHHHHH-HhccCcccchhhhh
Confidence            776665    6778877         89999998887666        34578888622 22222 36788999999999


Q ss_pred             hhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCCccccccccCCCcchhHhh
Q 001018          756 DCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGE  835 (1188)
Q Consensus       756 ~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R~a~~~~I~~L~~rtaig~  835 (1188)
                      +.+|.+.+++   +|.+||||.++.+++|.+|.++|.+|++.++-+.++.|+.|.++. | |.++.+.+..+.  -..|.
T Consensus       479 slLp~i~el~---~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~-I-r~~aa~~l~~l~--~~~G~  551 (759)
T KOG0211|consen  479 SLLPAIVELA---EDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYS-I-REAAARNLPALV--ETFGS  551 (759)
T ss_pred             hhhhhhhhhc---cchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHH-H-HHHHHHHhHHHH--HHhCc
Confidence            9999999998   999999999999999999999999999999999999999998753 3 777766666553  22489


Q ss_pred             hhhhhchhhHHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHHhhhchhhHHHhHHHHHHHhhcCCCh
Q 001018          836 RLATMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSNI  915 (1188)
Q Consensus       836 ~l~~~~lLP~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg~~e~~~~~iLpiL~~lv~D~~p  915 (1188)
                      +|+...++|..++..+.        .||++|+++.++.+             .+..+++.+.+.++++|+++++++|++|
T Consensus       552 ~w~~~~~i~k~L~~~~q--------~~y~~R~t~l~si~-------------~la~v~g~ei~~~~Llp~~~~l~~D~va  610 (759)
T KOG0211|consen  552 EWARLEEIPKLLAMDLQ--------DNYLVRMTTLFSIH-------------ELAEVLGQEITCEDLLPVFLDLVKDPVA  610 (759)
T ss_pred             chhHHHhhHHHHHHhcC--------cccchhhHHHHHHH-------------HHHHHhccHHHHHHHhHHHHHhccCCch
Confidence            99999999988873333        26999999865532             2222345599999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCChhH
Q 001018          916 DMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKNDMIVDKIRVQMDAFLEDGSHEA  995 (1188)
Q Consensus       916 nVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~l~~e~~~ekl~~~~~slL~D~~~~v  995 (1188)
                      |||||+|+.|..+.+.+........|+|++++|.+|++.||||+++.|++.+....-......+...++.+++.+..+..
T Consensus       611 nVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~~d~~~~~~~~a~~~~~~~~~  690 (759)
T KOG0211|consen  611 NVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLESSLDVRDKKQLIAFLEQDSHVL  690 (759)
T ss_pred             hhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999998888888889999999999999999


Q ss_pred             HHHHHHHHHHhcccCCHHHHH-HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHhhccccCchhhhhhhHHHHHHHHH
Q 001018          996 TVAVVRALAVAVPHTTERLRD-YLLSKIFQLSAVPSSSSDVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLL 1074 (1188)
Q Consensus       996 R~~vv~al~~l~p~~~~~~r~-~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~~aL~~~~l~~~~v~~~ilP~L~~L~ 1074 (1188)
                      .+..++++.+-.|+.+.++|+ ...+                        .++++++++||..+.....++.+|++.++.
T Consensus       691 ~~~~~~~~~~~~~~~~~~~~d~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  746 (759)
T KOG0211|consen  691 EVEIIKTKLVKGPNATLRFRDEFVIK------------------------SFEAITAKSCCKRKQKWSKNQNLPAICALR  746 (759)
T ss_pred             HHHHHHHHhhcccccCcccccccchh------------------------hhhhhhHHHHHhhhHHHHHhhcchHHHHhh
Confidence            999999999999999999988 5544                        578899999999999999999999999999


Q ss_pred             hccCCCChHHHH
Q 001018         1075 KDADSLDPAHKE 1086 (1188)
Q Consensus      1075 ~D~d~l~~~~k~ 1086 (1188)
                      +|.+.|+|.|..
T Consensus       747 ~~~~~l~~~~~~  758 (759)
T KOG0211|consen  747 KDDECLSPEHFV  758 (759)
T ss_pred             cCcccCCccccC
Confidence            999999999964

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>smart00667 LisH Lissencephaly type-1-like homology motif Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PHA02629 A-type inclusion body protein; Provisional Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1188
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-26
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-24
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-11
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-10
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-14
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-10
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-06
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-04
2pff_A1688 Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl 2e-04
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
 Score =  114 bits (287), Expect = 3e-26
 Identities = 77/491 (15%), Positives = 158/491 (32%), Gaps = 62/491 (12%)

Query: 487 IMCAIERHPDTSTRDSLTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQC 546
           +         ++ +  L     NL        RR         AK +     + E++P  
Sbjct: 149 LFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMF 208

Query: 547 WEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLAL 606
               +   +  RLL  ++C  +A+ +  E  ++L++  ++Q  ED +  VR   A     
Sbjct: 209 SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTE 268

Query: 607 LLPLFPNTDKYFKVEDLMFQLVCDPSGVVVET------TFKELLPAVINWGSKLDHILRV 660
           L            +      L+ D    V          F E L A       +  IL  
Sbjct: 269 LQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC 328

Query: 661 LLSYILSSAQRCPPLSGVEGSVESHLRVLGERERWN--LEVLLRMMAELLPFMQKNAIET 718
           +   +  + Q     S +   +     +LG+       L + L  + +  P ++ N I  
Sbjct: 329 IKELVSDANQHVK--SALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 386

Query: 719 CPFSSVSLSEETVFPSSLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNR 778
                                      E      +     P +++LA    + +  +R  
Sbjct: 387 L----------------------DCVNEVIGIRQLSQSLLPAIVELAE---DAKWRVRLA 421

Query: 779 ITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLA 838
           I +++  ++ Q G  +    +  + M  + D                      A+  R A
Sbjct: 422 IIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD-------------------HVYAI--REA 460

Query: 839 TMGVLPLLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNA-EIVNAVRFLCTFEE 897
               L  L+    G    H  +   +  +  +     N+  +      +N +  +C  + 
Sbjct: 461 ATSNLKKLVE-KFGKEWAHATIIPKVLAMSGD----PNYLHRMTTLFCINVLSEVCGQDI 515

Query: 898 HHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVK 957
               +   +  M      +++ N A  L+ I P ++      +V P L  L  DQ+++VK
Sbjct: 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVK 575

Query: 958 YASIDAFGAVA 968
           Y + +A   ++
Sbjct: 576 YFAQEALTVLS 586
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1188
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 100.0
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.85
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.81
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.81
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.79
1qgr_A876 Protein (importin beta subunit); transport recepto 99.78
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 99.78
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.72
1qgr_A876 Protein (importin beta subunit); transport recepto 99.71
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.62
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.42
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.42
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.39
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.39
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.25
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.22
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.21
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.19
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.19
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.16
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.11
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.1
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.08
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.05
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.01
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.01
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.97
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 98.96
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.95
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.89
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.87
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.84
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 98.8
2x1g_F 971 Cadmus; transport protein, developmental protein, 98.76
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 98.7
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 98.67
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.64
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 98.61
2x19_B 963 Importin-13; nuclear transport, protein transport; 98.61
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.61
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.6
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.56
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 98.49
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 98.47
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 98.46
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 98.38
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.35
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.34
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.31
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.27
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.27
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 98.26
2x1g_F971 Cadmus; transport protein, developmental protein, 98.24
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 98.23
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.21
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.2
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.11
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.05
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.04
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.98
2x19_B 963 Importin-13; nuclear transport, protein transport; 97.98
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.95
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.94
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.91
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.91
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.88
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.82
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 97.76
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 97.66
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.63
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 97.49
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.39
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 97.31
3nmz_A458 APC variant protein; protein-protein complex, arma 97.3
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 97.25
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 97.22
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 97.19
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 97.18
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.04
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 96.96
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.85
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.76
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 96.69
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 96.68
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 96.62
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 96.6
3nmz_A458 APC variant protein; protein-protein complex, arma 96.21
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 96.1
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 96.1
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 96.03
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 95.87
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 95.61
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 95.5
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 95.13
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 95.06
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 94.9
2db0_A253 253AA long hypothetical protein; heat repeats, hel 94.71
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 93.99
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 93.92
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 93.83
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 93.77
2db0_A253 253AA long hypothetical protein; heat repeats, hel 92.52
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 91.2
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 91.14
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 91.02
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 88.89
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 88.03
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 86.75
2xtc_A90 F-box-like/WD repeat-containing protein TBL1X; tra 85.67
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 84.8
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 81.11
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
Probab=100.00  E-value=2.4e-33  Score=334.62  Aligned_cols=506  Identities=18%  Similarity=0.184  Sum_probs=378.7

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhH
Q 001018          503 LTHTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLIL  582 (1188)
Q Consensus       503 Ll~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL  582 (1188)
                      -+..+++-++++++.+|..|++.|..++..+|++.+..+|+|++.+.+ |++++||..+++.+|.|.+++|+..+...++
T Consensus        11 ~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll   89 (588)
T 1b3u_A           11 PIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLL   89 (588)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGH
T ss_pred             cHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence            367788889999999999999999999999999999999999998876 6888999999999999999999888888899


Q ss_pred             HHHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccchHHHHHHHH
Q 001018          583 SIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLL  662 (1188)
Q Consensus       583 ~~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~~~~ll~~ll  662 (1188)
                      +.|.++..|+++.||.+|++.|..++..++++.....+.+++..+.+++...+|.+++..+ ..+.....  ......++
T Consensus        90 ~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l-~~~~~~~~--~~~~~~l~  166 (588)
T 1b3u_A           90 PPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLF-SVCYPRVS--SAVKAELR  166 (588)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGH-HHHTTTSC--HHHHHHHH
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHHHhcC--HHHHHHHH
Confidence            9999999999999999999999999999987766667889999999999999999887766 55544332  12233444


Q ss_pred             HHHhhhhccCCCccccchhhhhhh----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccc-hhhh
Q 001018          663 SYILSSAQRCPPLSGVEGSVESHL----RVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFP-SSLL  737 (1188)
Q Consensus       663 ~~L~~~v~~lp~~~~v~~~la~~l----~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~-~~ll  737 (1188)
                      +.+..-+++-  +..|+......+    ..++.+.         ....++|.+...+.        +++..+|.. ...+
T Consensus       167 ~~l~~l~~d~--~~~VR~~a~~~l~~l~~~~~~~~---------~~~~l~~~l~~~~~--------d~~~~vr~~a~~~l  227 (588)
T 1b3u_A          167 QYFRNLCSDD--TPMVRRAAASKLGEFAKVLELDN---------VKSEIIPMFSNLAS--------DEQDSVRLLAVEAC  227 (588)
T ss_dssp             HHHHHHHTCS--CHHHHHHHHHHHHHHHHTSCHHH---------HHHTHHHHHHHHHT--------CSCHHHHTTHHHHH
T ss_pred             HHHHHHhCCC--CHHHHHHHHHHHHHHHHHhcHHh---------HHHHHHHHHHHHhc--------CCcHHHHHHHHHHH
Confidence            4433221111  123332222222    2333333         45678887666443        233455542 2222


Q ss_pred             hhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCC
Q 001018          738 ELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFP  817 (1188)
Q Consensus       738 ~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R  817 (1188)
                      ..+..    ..+.+-....++|.+..+.   .|.+|+||.+++..+..++..+|.+.+...++|.|+.+++|+...    
T Consensus       228 ~~l~~----~~~~~~~~~~~~~~l~~~~---~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~----  296 (588)
T 1b3u_A          228 VNIAQ----LLPQEDLEALVMPTLRQAA---EDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAE----  296 (588)
T ss_dssp             HHHHH----HSCHHHHHHHTHHHHHHHH---TCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHH----
T ss_pred             HHHHH----hCCHHHHHHHHHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHH----
Confidence            21111    0112234567999999987   899999999999999999999999998889999999999997421    


Q ss_pred             ccccccccCCCcchhHhhhhhhhch-hh------HHhhhhcCCCCcchhhhHHHHHHHhhcccccccccchhhhHHHHHH
Q 001018          818 STIHSGIRGLKPRTAVGERLATMGV-LP------LLLAGVLGAPSKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVR  890 (1188)
Q Consensus       818 ~a~~~~I~~L~~rtaig~~l~~~~l-LP------~il~gVL~~~~~~~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~  890 (1188)
                                 +|......+...+. ++      .++.          .+..++.++..    +.+|.+ +.. .+.++.
T Consensus       297 -----------vr~~a~~~l~~~~~~~~~~~~~~~~~~----------~l~p~l~~~l~----d~~~~v-R~~-a~~~l~  349 (588)
T 1b3u_A          297 -----------VRAAASHKVKEFCENLSADCRENVIMS----------QILPCIKELVS----DANQHV-KSA-LASVIM  349 (588)
T ss_dssp             -----------HHHHHHHHHHHHHHTSCTTTHHHHHHH----------THHHHHHHHHT----CSCHHH-HHH-HHTTGG
T ss_pred             -----------HHHHHHHHHHHHHHHhChhhhhhHHHH----------HHHHHHHHHhc----CCCHHH-HHH-HHHHHH
Confidence                       12222222211111 10      1111          12234555443    345777 332 244443


Q ss_pred             hhh---chhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHH
Q 001018          891 FLC---TFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAV  967 (1188)
Q Consensus       891 ~Lg---~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~L  967 (1188)
                      .++   ..+.....++|.+..+++|+.++||.+++..|..+...+|.+.....++|.|.++.+|++|+||.+++.+++.+
T Consensus       350 ~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l  429 (588)
T 1b3u_A          350 GLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLL  429 (588)
T ss_dssp             GGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            333   23445678999999999999999999999999999999998888899999999999999999999999999999


Q ss_pred             HHhhchHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHH-HHHHHHHHhhcCCCCChhhHHHHHHHHHHH
Q 001018          968 AQHFKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRD-YLLSKIFQLSAVPSSSSDVMRRRERANAFC 1046 (1188)
Q Consensus       968 A~~l~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~-~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~ 1046 (1188)
                      +..+|.+++.+.+.|.+..++.|++..+|..++.+++.++..+++.+.. .++|.|..+..-+|+    ..|...+.++.
T Consensus       430 ~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~----~~R~~a~~~l~  505 (588)
T 1b3u_A          430 AGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNY----LHRMTTLFCIN  505 (588)
T ss_dssp             HHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCH----HHHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCH----HHHHHHHHHHH
Confidence            9999998777889999999999999999999999999999999988766 899999988776665    34766766666


Q ss_pred             HHHHhhccccCchhhhhhhHHHHHHHHHhccC
Q 001018         1047 ESIRALDATELSATSVRDFLLPAIQNLLKDAD 1078 (1188)
Q Consensus      1047 ~a~~aL~~~~l~~~~v~~~ilP~L~~L~~D~d 1078 (1188)
                      .....+.     .+...+.++|.|..+++|.+
T Consensus       506 ~l~~~~~-----~~~~~~~~~~~l~~~l~d~~  532 (588)
T 1b3u_A          506 VLSEVCG-----QDITTKHMLPTVLRMAGDPV  532 (588)
T ss_dssp             HHHHHHH-----HHHHHHHTHHHHHHGGGCSC
T ss_pred             HHHHhcC-----HHHHHHHHHHHHHhhCCCCC
Confidence            6555443     33466789999999988765
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1188
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-20
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-18
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 4e-08
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 4e-05
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 0.001
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 0.003
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (233), Expect = 2e-20
 Identities = 77/586 (13%), Positives = 180/586 (30%), Gaps = 27/586 (4%)

Query: 501  DSLT--HTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERR 558
            DSL     L + ++  D + R   +    T+A  +G  RT  ELLP   + I    +E  
Sbjct: 7    DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-DEVL 65

Query: 559  LLVAQSCGELAEFVRPEIRDSLILSIVQQLVEDSATVVREAAARNLALLLPLFPNTDKYF 618
            L +A+  G     V        +L  ++ L     TVVR+ A  +L  +      +D   
Sbjct: 66   LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125

Query: 619  KVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSKLDHILRVLLSYILSSA----QRCPP 674
                L+ +L          +             S +   LR     + S      +R   
Sbjct: 126  HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185

Query: 675  LSGVEGSVESHLRVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFPS 734
                E +    L  +          L     + +  +   A             E +   
Sbjct: 186  SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245

Query: 735  SLLELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSY 794
            +L +       +     +M  D F  L +       K D +       +     +   + 
Sbjct: 246  TLRQAA---EDKSWRVRYMVADKFTELQKAVGPEITKTDLVP-AFQNLMKDCEAEVRAAA 301

Query: 795  LTHIMLPVFMVAVGDNANLTFFPSTIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAP 854
                     +    +N +     + I S I                  L  ++ G+    
Sbjct: 302  SHK------VKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355

Query: 855  SKHDQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLCTFEEHHTMVFNILWEMVVSSN 914
             K + +   L   L +   +           ++ V  +    +    +   + E+   + 
Sbjct: 356  GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415

Query: 915  IDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQHFKND 974
              +++     + ++   +  +    ++    +    D    ++ A+      + + F  +
Sbjct: 416  WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE 475

Query: 975  MIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPH-TTERLRDYLLSKIFQLSAVPSSSS 1033
                 I  ++ A   D ++   +  +  + V       +    ++L  + +++  P ++ 
Sbjct: 476  WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 535

Query: 1034 DVMRRRERANAFCESIRALDATELSATSVRDFLLPAIQNLLKDADS 1079
                   R N   +S++ +    L  ++++  + P ++ L +D D 
Sbjct: 536  -------RFNV-AKSLQKI-GPILDNSTLQSEVKPILEKLTQDQDV 572
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1188
d1b3ua_588 Constant regulatory domain of protein phosphatase 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.53
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.41
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.37
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.31
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.28
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.26
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.25
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.24
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.16
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.14
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.12
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.04
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.99
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.67
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.63
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.62
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.62
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.43
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.25
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.19
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.19
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.05
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 97.98
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 97.98
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.98
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 97.91
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.89
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 97.43
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.12
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.81
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 96.02
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 91.04
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 81.51
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-36  Score=358.80  Aligned_cols=507  Identities=18%  Similarity=0.188  Sum_probs=376.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCchhhHhhHHHHHHHHhhcCchhHHHHHHHHHHHHHhhhChhhhhhhhHH
Q 001018          504 THTLFNLIKRPDEKQRRIIMDACVTLAKNVGEMRTEMELLPQCWEQINHMYEERRLLVAQSCGELAEFVRPEIRDSLILS  583 (1188)
Q Consensus       504 l~ll~nLiKdddp~vRr~aa~~l~~iA~~lg~ert~~ELLP~l~eli~Dd~dEVRlLvAescg~La~~vg~e~r~slLL~  583 (1188)
                      +..|...++++++.+|..+++.++.+|..+|+++++.+|+|++.+.++ +.|||+..+++.+|.+.+++|++.+.+.|+|
T Consensus        12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~-~~~ev~~~~~~~l~~~~~~~~~~~~~~~ll~   90 (588)
T d1b3ua_          12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIY-DEDEVLLALAEQLGTFTTLVGGPEYVHCLLP   90 (588)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCC-CCHHHHHHHHHHHTTCSGGGTSGGGGGGGHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence            567899999999999999999999999999999999999999999887 4578999999999999999999999999999


Q ss_pred             HHHHhhcCCcHHHHHHHHHHHHhhcccCCCchhhhhHHHHHHHhccCCChhHHHHHHHhhHHHHHhcccc-hHHHHHHHH
Q 001018          584 IVQQLVEDSATVVREAAARNLALLLPLFPNTDKYFKVEDLMFQLVCDPSGVVVETTFKELLPAVINWGSK-LDHILRVLL  662 (1188)
Q Consensus       584 ~LqqL~eD~e~~VR~aAAksL~~l~~~l~~~d~~~qi~~~f~~Ll~D~s~~Vr~aa~~~Llpala~~~~~-~~~ll~~ll  662 (1188)
                      ++++++.|+++.||++|+++|..++..++..+....+.|++..|..+....+|..+...+ +.+..-... ....+..++
T Consensus        91 ~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll-~~~~~~~~~~~~~~l~~~~  169 (588)
T d1b3ua_          91 PLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLF-SVCYPRVSSAVKAELRQYF  169 (588)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGH-HHHTTTSCHHHHHHHHHHH
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHH-HHHHHHhhHHHHHHHHHHH
Confidence            999999999999999999999999999988877778899999999998888888776665 555443321 111112223


Q ss_pred             HHHhhhhccCCCccccchhhhhhh----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCcccccc-hhhh
Q 001018          663 SYILSSAQRCPPLSGVEGSVESHL----RVLGERERWNLEVLLRMMAELLPFMQKNAIETCPFSSVSLSEETVFP-SSLL  737 (1188)
Q Consensus       663 ~~L~~~v~~lp~~~~v~~~la~~l----~~Lg~d~sWrV~~~l~~l~~LLP~i~~~l~~~~pf~s~~qd~evrl~-~~ll  737 (1188)
                      ..++.+  ..   ..||...+..+    ..++.+.         ....++|.+...+.        +++..+|.. ...+
T Consensus       170 ~~l~~D--~~---~~VR~~a~~~l~~~~~~~~~~~---------~~~~l~~~l~~l~~--------d~~~~vr~~a~~~l  227 (588)
T d1b3ua_         170 RNLCSD--DT---PMVRRAAASKLGEFAKVLELDN---------VKSEIIPMFSNLAS--------DEQDSVRLLAVEAC  227 (588)
T ss_dssp             HHHHTC--SC---HHHHHHHHHHHHHHHHTSCHHH---------HHHTHHHHHHHHHT--------CSCHHHHTTHHHHH
T ss_pred             HHHhcc--CC---HHHHHHHHHHHHHHHHHhcHHH---------HHHHHHHHHHHHhc--------CCchhhHHHHHHHH
Confidence            333322  12   22332222222    2334444         45567776555432        334445542 1111


Q ss_pred             hhhhcCCCCccchhhHHhhhhHHHHHhhccCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHhCCccccccCC
Q 001018          738 ELYAGGHIEWPAFEWMHVDCFPGLIQLACLLPEKEDNLRNRITKFLLAVSKQFGDSYLTHIMLPVFMVAVGDNANLTFFP  817 (1188)
Q Consensus       738 ~l~~~~~~~w~~~~wl~~~lLP~l~~LA~~~~D~sWrVR~Aia~~l~~La~~fG~e~t~~~LlP~fl~lL~D~~~~~i~R  817 (1188)
                      ..+..    ..+.+.....++|.+.++.   .|.+|+||.++++.+..++..+|.+.....++|.|..+++|....    
T Consensus       228 ~~i~~----~~~~~~~~~~i~~~l~~~~---~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~----  296 (588)
T d1b3ua_         228 VNIAQ----LLPQEDLEALVMPTLRQAA---EDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAE----  296 (588)
T ss_dssp             HHHHH----HSCHHHHHHHTHHHHHHHH---TCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHH----
T ss_pred             HHhhc----cCCHHHHHHHHHHHHHHhc---ccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchH----
Confidence            11110    1112334567899999987   999999999999999999999999999999999999999997521    


Q ss_pred             ccccccccCCCcchhHhhhhhhhchhhHHhhhhcCCCCcc----hhhhHHHHHHHhhcccccccccchhhhHHHHHHhhh
Q 001018          818 STIHSGIRGLKPRTAVGERLATMGVLPLLLAGVLGAPSKH----DQLADYLRKLLVEGTMKENHTVKCNAEIVNAVRFLC  893 (1188)
Q Consensus       818 ~a~~~~I~~L~~rtaig~~l~~~~lLP~il~gVL~~~~~~----~~l~nyL~rLt~~~s~~~~W~v~~~p~ll~ai~~Lg  893 (1188)
                                 +|......+...+.       .++.....    +.+...+..+..    +.+|.+ +.. +..++..++
T Consensus       297 -----------vr~~a~~~l~~~~~-------~l~~~~~~~~~~~~i~~~l~~~~~----d~~~~v-r~~-~~~~l~~~~  352 (588)
T d1b3ua_         297 -----------VRAAASHKVKEFCE-------NLSADCRENVIMSQILPCIKELVS----DANQHV-KSA-LASVIMGLS  352 (588)
T ss_dssp             -----------HHHHHHHHHHHHHH-------TSCTTTHHHHHHHTHHHHHHHHHT----CSCHHH-HHH-HHTTGGGGH
T ss_pred             -----------HHHHHHHHHHHHHH-------HHhhhhhhhhhHHHHHHHHHHhhc----CCChHH-HHH-HHHHHhhhh
Confidence                       12222222211111       11110000    011123333333    234555 222 223332222


Q ss_pred             ---chhhHHHhHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhchhhhhhhhhhHHHhhccCCCcchHHHHHHHHHHHHHh
Q 001018          894 ---TFEEHHTMVFNILWEMVVSSNIDMKINAANLLKVIVPYINAKVTSMQVLPALVTLGSDQNLNVKYASIDAFGAVAQH  970 (1188)
Q Consensus       894 ---~~e~~~~~iLpiL~~lv~D~~pnVR~naak~L~~L~~~ig~~~ls~~VlPaLv~LasD~d~dVR~aaieAl~~LA~~  970 (1188)
                         ..+.+.+.++|.+..+++|+.++||.+++..+..+...+|...+.+.++|.+..+.+|++|+||.+++++++.++..
T Consensus       353 ~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~  432 (588)
T d1b3ua_         353 PILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ  432 (588)
T ss_dssp             HHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence               34667788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhcccCCHHHHH-HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHH
Q 001018          971 FKNDMIVDKIRVQMDAFLEDGSHEATVAVVRALAVAVPHTTERLRD-YLLSKIFQLSAVPSSSSDVMRRRERANAFCESI 1049 (1188)
Q Consensus       971 l~~e~~~ekl~~~~~slL~D~~~~vR~~vv~al~~l~p~~~~~~r~-~IlP~L~~L~~vpN~~~~~~~R~~vAk~l~~a~ 1049 (1188)
                      +|.+++.+++.+.+..++.|+++.+|.+.+++++.++..+++++.. .|+|.+..+..-+|+    ..|...+.++..+.
T Consensus       433 ~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~----~~R~~~~~~l~~l~  508 (588)
T d1b3ua_         433 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNY----LHRMTTLFCINVLS  508 (588)
T ss_dssp             HCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCH----HHHHHHHHHHHHHH
T ss_pred             cChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998877 899999999988886    34655544444333


Q ss_pred             HhhccccCchhhhhhhHHHHHHHHHhccC
Q 001018         1050 RALDATELSATSVRDFLLPAIQNLLKDAD 1078 (1188)
Q Consensus      1050 ~aL~~~~l~~~~v~~~ilP~L~~L~~D~d 1078 (1188)
                      ..+     +.+.+.++++|.|..+++|..
T Consensus       509 ~~~-----~~~~~~~~ilp~ll~~~~D~v  532 (588)
T d1b3ua_         509 EVC-----GQDITTKHMLPTVLRMAGDPV  532 (588)
T ss_dssp             HHH-----HHHHHHHHTHHHHHHGGGCSC
T ss_pred             HHc-----ChHHHHHHHHHHHHHHcCCCC
Confidence            322     345677889999999998865
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure