Citrus Sinensis ID: 001037

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------118

MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAGSSGSSSNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQTTVGQSKRHKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQIPQKESRLGSGSGSSREQSQPDDSPHPGELVICKKKRKDREKSVVKPRSVSGPVSPPSLGRNIKSPGLGLVPKDMRHTQQTTHQHGWANQPAQPANGGSGAVGWANPVKRLRTDAGKRRPSQL

cccHHHHHHHHccccEEEEEEccHHHHHHHHHHccccccccEEEcHHHHHHHHHccccccccEEEEEEccccccccccHHHHHHHccccccEEEEccccccccHHHHHHHHccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHcHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHccHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHccccccccEEEEcccccccccccccccEEEEEcccccccHHHHHHHHHHHccccccEEEEEEEEcHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccHHHHHHHHHHHHHcccHHHHccccccHHHHHHcHHHHHHHHHHcccccccccccccccccccHHHHHHHcccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccHHHcccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccHHHHHHHHcccEEEEEEEccHHHHHHHHHHHHcccccEEEEEEHHHHHHcHHHHHHHHHEEEEEccHHHcccHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHcHHHHccHHHHHHHHccccccccccccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcHHHHHHHHHHHHHHcccEEEccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHcccHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHccccccEEEEEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHHHcccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccHHHHHHHHHHHHHHcHHHHccccccccHHHHHHHHHccHHHHHHHHHHcHHHHHHHHHHccccccHHHccccHHHHHHHHHHcccccccEEEccccccccccHHHHHcccccccccccEEEEccccccccccccHHcccccccccccccccccccccccccccccccccccHccccccccccccccccHHHHccccHHccccccccccccccccccccccHHHcccHHHHccccccccccccHHccccEEEEEccccccccccccccccccccccccEEccccccccEEEEccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccEHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccc

msmwqselhkwlpsvsciyyvgakdqrsRLFSQEVAALKFNVLVTTYEFImydrsklskvdwKYIIIDEAQRMKDRESVLARDLDRYRCQRRLlltgtplqNDLKELWSLLNLLlpevfdnrkafhdwfsqpfqkegpthnadddwlETEKKVIIIHRLHQILEPFMLRRRvedvegslppkvSIVLRCRMSAIQSAIYDWIKAtgtlrvdpedekrrvqknpiyQAKVYKTLNNRCMELRKtcnhpllnypyfsdlsKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRidgttsledresaivdfnshdsdCFIFLLSIRAAgrglnlqsadtviiydpdpnpknEEQAVARAHRIGQKREVKVIYMEAVVDKISShqkedelrsggtvdleddlagkdrYIGSIEGLIRNNIQQYKIDMADEVinagrfdqrttHEERRMTLETLLHDEEryqetvhdvpslqEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANlskkpsknilfgsnigvdsgeieterkrgpkgkkypnykevddeigeyseassderngypvqeeegeigefeddeysgavgaplsnkdqseedgpvceggydylrpsentrnnhvveeagssgsssnsrrltqivspvspqkfgslsalearpgslskrmpdeleegeiavsgdshmdhqqsgswthdrdegedeqvlqpkikrkrsirvrprhtverpeersctdtplhrgdssllpfqmdnkypaqlrtdtemkahgesnslrhdqsepssksrrnlpsrkianapksraslktgrlncmpghtedaadhfkeswdgkianasgssnfsaKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRietsgyvsgagnnildlrkIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLkiafpdtdFREARSalsftgplstsvstpsprqttvgqskrhkiinemepgpsppqkppqrgsvpvsedsrirvqipqkesrlgsgsgssreqsqpddsphpgelvickkkrkdreksvvkprsvsgpvsppslgrnikspglglvpkdmrhtqqtthqhgwanqpaqpanggsgavgwanpvkrlrtdagkrrpsql

msmwqselhkwlpSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFimydrsklskvdwKYIIIDeaqrmkdresvlardldryrCQRRLlltgtplqndLKELWSLLNLLLPEVFDNRKAFHDWFsqpfqkegpthNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKAtgtlrvdpedekrrvqknpiyqakvykTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAhrigqkrevkVIYMEAVVDKisshqkedelrsggtvdleddlaGKDRYIGSIEGLIRNNIQQYKIDMADEVINAgrfdqrttheeRRMTLETllhdeeryqetvhdvpslqevNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATianlskkpsknilfgsnigvdsgeieterkrgpkgkkypnykevddeigeyseassderngypVQEEEGEIGEFEDDEYSGAVGaplsnkdqseedgpVCEGGYDYLRPSENTRNNHVVEeagssgsssnsrrLTQIVspvspqkfgslsalearpgslskrmpDELEEGEiavsgdshMDHQQSgswthdrdegedeqvlqpkikrkrsirvrprhtverpeersctdtplhrgdssllpfqmdNKYPAQLRTDTEMKAHgesnslrhdqsepssksrrnlpsrkianapksraslktgrlnCMPGHTEDAADHFKESWDGKIANasgssnfsakmsDVIQRRCKNVISKLqrriekeghqivpLLTDLWKRIETSgyvsgagnnildlrkidQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSftgplstsvstpsprqttvgqskRHKIINemepgpsppqkppqrgsvpvsedsrirvqipqkesrlgsgsgssreqsqpddsphpgelvickkkrkdreksvvkprsvsgpvsppslgrnikSPGLGLVPKDMRHTQQTTHQHGWANQPAQPANGGSGAVGWANPVKrlrtdagkrrpsql

MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDlkelwsllnlllPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQeeegeigefeddeYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAgssgsssnsRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQTTVGQSKRHKIINEMEpgpsppqkppqrgsVPVSEDSRIRVQIPQKesrlgsgsgssreqsqPDDSPHPGELVICKKKRKDREKsvvkprsvsgpvsppsLGRNIKSPGLGLVPKDMRHTQQTTHQHGWANQPAQPANGGSGAVGWANPVKRLRTDAGKRRPSQL

******ELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQK****HNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVD********QKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD*****************IGQKREVKVIYMEAVVDKI*******************DLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFD*********************************************VELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANL*******ILFGS***********************************************************************************************************************************************************************************************************************************************************************************************************************************VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFR********************************************************************************************************************************************************************************************

MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEG**********ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP*****************YKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDL***********************QYKIDMADEVINA**********************************SLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR**************************************************************************************************************************************************************************************VSGDSHMDHQQSGSWTHDRDEG*D*******************************************PFQM****************************************************************************************************************************************SGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDF*********************************************************************************************************************************************************************************************

********HKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKI*************TVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEY******************EIGEFEDDEYSGAVGAPL**********PVCEGGYDYLRPSENTRNNHVV***************TQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGD*********************QVLQPKIKRKRSIRVR****************PLHRGDSSLLPFQMDNKYPAQLRTDTEMK***********************PSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFT*********************RHKIINEMEP*********************IRVQIPQ***********************PGELVICKKK******************SPPSLGRNIKSPGLGLVPKDM*************NQPAQPANGGSGAVGWANPVKRLRT**********

MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQK******ADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED***********QAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERY***VHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDE*****************************************************EG*************************************************************PDELEEGEIAVSGD*******************DEQVLQPKIKRKRSIRVRPR*************************************************************************************************************************SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARS*************************************************************************************PHPGELVICKKKR**************************************************************************************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1179	2.2.26 [Sep-21-2011]
Q6EVK6		2193	ATP-dependent helicase BR	yes	no	0.965	0.518	0.717	0.0
P25439		1638	ATP-dependent helicase br	yes	no	0.387	0.278	0.408	1e-104
O94421		1680	SWI/SNF chromatin-remodel	yes	no	0.388	0.272	0.395	1e-101
A7Z019		1606	Transcription activator B	yes	no	0.409	0.300	0.401	2e-99
Q8K1P7		1613	Transcription activator B	yes	no	0.409	0.299	0.401	2e-99
Q3TKT4		1613	Transcription activator B	yes	no	0.409	0.299	0.401	3e-99
P51532		1647	Transcription activator B	yes	no	0.410	0.293	0.386	4e-99
Q6DIC0		1577	Probable global transcrip	no	no	0.387	0.289	0.404	7e-99
P51531		1590	Probable global transcrip	no	no	0.387	0.287	0.404	9e-99
Q9UTN6		1199	Chromatin structure-remod	no	no	0.390	0.383	0.408	5e-97

>sp\|Q6EVK6\|BRM_ARATH ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1	Back alignment and function desciption

 Score = 1671 bits (4327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 852/1187 (71%), Positives = 970/1187 (81%), Gaps = 49/1187 (4%)

Query: 4    WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
            W+SELH WLPSVSCIYYVG KDQRS+LFSQEV A+KFNVLVTTYEFIMYDRSKLSKVDWK
Sbjct: 1045 WKSELHTWLPSVSCIYYVGTKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKVDWK 1104

Query: 64   YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRK 123
            YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLP+VFDNRK
Sbjct: 1105 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRK 1164

Query: 124  AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
            AFHDWF+QPFQKEGP HN +DDWLETEKKVI+IHRLHQILEPFMLRRRVEDVEGSLP KV
Sbjct: 1165 AFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLPAKV 1224

Query: 184  SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 243
            S+VLRCRMSAIQSA+YDWIKATGTLRVDP+DEK R QKNPIYQAK+Y+TLNNRCMELRK 
Sbjct: 1225 SVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIYRTLNNRCMELRKA 1284

Query: 244  CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL 303
            CNHPLLNYPYF+D SKDFLV+SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL
Sbjct: 1285 CNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL 1344

Query: 304  QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP 363
            QWR+LVYRRIDGTTSLEDRESAIVDFN  D+DCFIFLLSIRAAGRGLNLQ+ADTV+IYDP
Sbjct: 1345 QWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDP 1404

Query: 364  DPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD 423
            DPNPKNEEQAVARAHRIGQ REVKVIYMEAVV+K+SSHQKEDELRSGG+VDLEDD+AGKD
Sbjct: 1405 DPNPKNEEQAVARAHRIGQTREVKVIYMEAVVEKLSSHQKEDELRSGGSVDLEDDMAGKD 1464

Query: 424  RYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHD 483
            RYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHD
Sbjct: 1465 RYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHD 1524

Query: 484  VPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSK 543
            VPSL EVNRMIARSE+EVELFDQMDEEF W EEMT ++QVPKWLRAST+EVNAT+A+LSK
Sbjct: 1525 VPSLHEVNRMIARSEEEVELFDQMDEEFDWTEEMTNHEQVPKWLRASTREVNATVADLSK 1584

Query: 544  KPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQ 602
            KPSKN+L  SN+ V  G    ERKRG PK KK  NYKE++D+I  YSE SS+ERN     
Sbjct: 1585 KPSKNMLSSSNLIVQPGGPGGERKRGRPKSKKI-NYKEIEDDIAGYSEESSEERNIDSGN 1643

Query: 603  EEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAGSS 662
            EEEG+I +F+DDE +GA+G   +NK + + + PVC  GYDY   S + + N   ++AGSS
Sbjct: 1644 EEEGDIRQFDDDELTGALGDHQTNKGEFDGENPVC--GYDYPPGSGSYKKNPPRDDAGSS 1701

Query: 663  GSSSNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQS 722
            GSS  S R  ++ SPVS QKFGSLSAL+ RPGS+SKR+ D+LEEGEIA SGDSH+D Q+S
Sbjct: 1702 GSSPESHRSKEMASPVSSQKFGSLSALDTRPGSVSKRLLDDLEEGEIAASGDSHIDLQRS 1761

Query: 723  GSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMD 782
            GSW HDRDEG++EQVLQP IKRKRSIR+RPR T ER +    ++ P  +      P Q+D
Sbjct: 1762 GSWAHDRDEGDEEQVLQPTIKRKRSIRLRPRQTAERVD---GSEMPAAQ------PLQVD 1812

Query: 783  NKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSR-ASLKTGRLNC 841
              Y ++LRT  +  +H             SS   R++P++K+A+  K   +S K+GRLN 
Sbjct: 1813 RSYRSKLRTVVD--SHSSRQD-----QSDSSSRLRSVPAKKVASTSKLHVSSPKSGRLNA 1865

Query: 842  MPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIV 901
                 ED A+  +E+WDG   +   SSN  A+MS +IQ+RCK VISKLQRRI+KEG QIV
Sbjct: 1866 TQLTVEDNAEASRETWDG--TSPISSSNAGARMSHIIQKRCKIVISKLQRRIDKEGQQIV 1923

Query: 902  PLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 961
            P+LT+LWKRI+ +GY +G  NN+L+LR+ID RV+RLEY GVMEL SDVQ ML+GAMQFYG
Sbjct: 1924 PMLTNLWKRIQ-NGYAAGGVNNLLELREIDHRVERLEYAGVMELASDVQLMLRGAMQFYG 1982

Query: 962  FSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQTTVGQSK 1021
            FSHEVRSEA+KVH+LFFDLLK++FPDTDFREAR+ALSF+G   T VSTP+PR   + Q K
Sbjct: 1983 FSHEVRSEAKKVHNLFFDLLKMSFPDTDFREARNALSFSGSAPTLVSTPTPRGAGISQGK 2042

Query: 1022 RHKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQIPQKESRLGSGSGSSREQSQPDDSP 1081
            R K++NE E  PS PQ+  QR      E+SRIRVQIPQKE++LG  +      S  D+SP
Sbjct: 2043 RQKLVNEPETEPSSPQRSQQR------ENSRIRVQIPQKETKLGGTT------SHTDESP 2090

Query: 1082 ---HPGELVICKKKRKDREKSVVKPRS----VSGPVSPPSLGRNIKSPGLGLVPKDMRHT 1134
               HPGELVICKKKRKDREKS  K R+          P  +GR ++SP  G VP++ R  
Sbjct: 2091 ILAHPGELVICKKKRKDREKSGPKTRTGGSSSPVSPPPAMIGRGLRSPVSGGVPRETRLA 2150

Query: 1135 QQTTHQHGWANQPAQPANGGSG--AVGWANPVKRLRTDAGKRRPSQL 1179
            Q    Q  W NQP  P N G+   +VGWANPVKRLRTD+GKRRPS L
Sbjct: 2151 Q----QQRWPNQPTHPNNSGAAGDSVGWANPVKRLRTDSGKRRPSHL 2193

ATPase subunit of a multiprotein complex equivalent of the SWI/SNF complex that acts by remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. Represses embryonic genes in leaves and controls shoot development and flowering. Activates flower homeotic genes.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp\|P25439\|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2	Back alignment and function description

>sp\|O94421\|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf22 PE=1 SV=2	Back alignment and function description

>sp\|A7Z019\|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1	Back alignment and function description

>sp\|Q8K1P7\|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1	Back alignment and function description

>sp\|Q3TKT4\|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1	Back alignment and function description

>sp\|P51532\|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2	Back alignment and function description

>sp\|Q6DIC0\|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1	Back alignment and function description

>sp\|P51531\|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2	Back alignment and function description

>sp\|Q9UTN6\|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf21 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1179
224064045		2222	chromatin remodeling complex subunit [Po	0.992	0.526	0.826	0.0
255541636		2248	Chromo domain protein, putative [Ricinus	0.993	0.520	0.824	0.0
359489634		2263	PREDICTED: ATP-dependent helicase BRM-li	0.989	0.515	0.805	0.0
147789690		2238	hypothetical protein VITISV_024679 [Viti	0.965	0.508	0.802	0.0
356560792		2229	PREDICTED: ATP-dependent helicase BRM-li	0.978	0.517	0.758	0.0
356520394		2226	PREDICTED: ATP-dependent helicase BRM-li	0.977	0.517	0.763	0.0
449432144		2247	PREDICTED: ATP-dependent helicase BRM-li	0.985	0.517	0.772	0.0
449480215		2251	PREDICTED: LOW QUALITY PROTEIN: ATP-depe	0.985	0.516	0.768	0.0
356568407		2222	PREDICTED: ATP-dependent helicase BRM-li	0.979	0.519	0.731	0.0
356531981		2222	PREDICTED: ATP-dependent helicase BRM-li	0.982	0.521	0.728	0.0

>gi\|224064045\|ref\|XP_002301364.1\| chromatin remodeling complex subunit [Populus trichocarpa] gi\|222843090\|gb\|EEE80637.1\| chromatin remodeling complex subunit [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1951 bits (5053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 975/1179 (82%), Positives = 1062/1179 (90%), Gaps = 9/1179 (0%)

Query: 4    WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
            W+SELH WLPSVSCIYYVG KDQR++LFSQEV+A+KFNVLVTTYEFIMYDR+KLSK+DWK
Sbjct: 1050 WKSELHSWLPSVSCIYYVGGKDQRAKLFSQEVSAMKFNVLVTTYEFIMYDRTKLSKLDWK 1109

Query: 64   YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRK 123
            YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRK
Sbjct: 1110 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRK 1169

Query: 124  AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
            AFHDWFS+PFQ+E P H+ +DDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV
Sbjct: 1170 AFHDWFSKPFQREAPVHDGEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 1229

Query: 184  SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 243
            SIVLRCRMSAIQS IYDWIK+TGT+RVDPEDEKRRVQKNP YQAKVY+TLNNRCMELRKT
Sbjct: 1230 SIVLRCRMSAIQSTIYDWIKSTGTIRVDPEDEKRRVQKNPAYQAKVYRTLNNRCMELRKT 1289

Query: 244  CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL 303
            CNHPLLNYPYF+DLSKDFLVKSCGKLW+LDRILIKLQRTGHRVLLFSTMTKLLDILEEYL
Sbjct: 1290 CNHPLLNYPYFNDLSKDFLVKSCGKLWVLDRILIKLQRTGHRVLLFSTMTKLLDILEEYL 1349

Query: 304  QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP 363
            QWR+LVYRRIDGTTSLEDRESAIVDFNS  SDCFIFLLSIRAAGRGLNLQSADTV+IYDP
Sbjct: 1350 QWRRLVYRRIDGTTSLEDRESAIVDFNSPGSDCFIFLLSIRAAGRGLNLQSADTVVIYDP 1409

Query: 364  DPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD 423
            DPNPKNEEQAVARAHRIGQ REVKVIYMEAVV+KISS QKEDELRSGGTVDLEDDL GKD
Sbjct: 1410 DPNPKNEEQAVARAHRIGQTREVKVIYMEAVVNKISSCQKEDELRSGGTVDLEDDLVGKD 1469

Query: 424  RYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHD 483
            RY+GSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQET+HD
Sbjct: 1470 RYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETLHD 1529

Query: 484  VPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSK 543
            VPSLQEVNRMIARSEDEVELFDQMDEEF WIEEMTRYDQVPKWLRASTKEV+ATIA LSK
Sbjct: 1530 VPSLQEVNRMIARSEDEVELFDQMDEEFDWIEEMTRYDQVPKWLRASTKEVDATIAVLSK 1589

Query: 544  KPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQ 602
            KPSK ILF   +G+ SGE+ETERKRG PKGKK PNYKE+D+E G+YSEASSDERNGY   
Sbjct: 1590 KPSKAILFADGMGMASGEMETERKRGRPKGKKSPNYKEIDEETGDYSEASSDERNGYSAH 1649

Query: 603  EEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAGSS 662
            EEEGEI EFEDDE S AVGAP  NKDQSE+DGP C+GGY+Y +  E+TRN+H ++EAGSS
Sbjct: 1650 EEEGEIREFEDDESSDAVGAPPVNKDQSEDDGPACDGGYEYHQAVESTRNDHALDEAGSS 1709

Query: 663  GSSSNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQS 722
            GSSS+S+R+T+++SPVSPQKFGSLSALEARPGSLSK++PDELEEGEIAVSGDSHMDHQQS
Sbjct: 1710 GSSSDSQRMTRMISPVSPQKFGSLSALEARPGSLSKKLPDELEEGEIAVSGDSHMDHQQS 1769

Query: 723  GSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMD 782
            GSW HDRDEGEDEQVLQPKIKRKRSIR+RPR TVE+PEE+S  D  + RGDS LLPFQ+D
Sbjct: 1770 GSWIHDRDEGEDEQVLQPKIKRKRSIRLRPRLTVEKPEEKSSND--VQRGDSFLLPFQVD 1827

Query: 783  NKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCM 842
            NKY AQL++DTEMKA  E +  +HDQS+ SS+SRRNLPSR+IA   K RAS K+ RLN  
Sbjct: 1828 NKYQAQLKSDTEMKALVEPSGFKHDQSD-SSRSRRNLPSRRIAKTSKLRASPKSSRLNLQ 1886

Query: 843  PGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVP 902
                EDAA+H +ESWDGK+ + SG+S    KMSDVIQRRCKNVISK QRRI+KEG QIVP
Sbjct: 1887 SAPAEDAAEHSRESWDGKVPSTSGASTL-GKMSDVIQRRCKNVISKFQRRIDKEGQQIVP 1945

Query: 903  LLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGF 962
            LL DLWKRIE  GY+SGAG N+LDLRKI+QRVDRLEY+GVMELV DVQFMLKGAMQFYGF
Sbjct: 1946 LLADLWKRIENPGYISGAGTNLLDLRKIEQRVDRLEYSGVMELVFDVQFMLKGAMQFYGF 2005

Query: 963  SHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQTTVGQSKR 1022
            SHEVR+EARKVHDLFFD+LKIAFPDTDFREAR   SF+GP STS+S PSP+Q  +G  KR
Sbjct: 2006 SHEVRTEARKVHDLFFDILKIAFPDTDFREARDTFSFSGPSSTSISAPSPKQAALGLIKR 2065

Query: 1023 HKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQIPQKESRLGSGSGSSREQSQPDDSP- 1081
            HK IN++EP  S   KP QRGS+P  +D+R RV +PQKE+RLGSGSGSSREQ   DDSP 
Sbjct: 2066 HKSINDVEPDNSTTHKPMQRGSIPTGDDTR-RVHVPQKETRLGSGSGSSREQYPQDDSPL 2124

Query: 1082 HPGELVICKKKRKDREKSVVKPRS-VSGPVSPPSLGRNIKSPGLGLVPKDMRHTQQTTHQ 1140
            HPGELVICKKKRKDR+KSVV+ R+  SGPVSPPS+GRNI SP L  +PKD R  QQ THQ
Sbjct: 2125 HPGELVICKKKRKDRDKSVVRSRTGSSGPVSPPSMGRNITSPILSSIPKDARPNQQNTHQ 2184

Query: 1141 HGWANQPAQPANGGSGAVGWANPVKRLRTDAGKRRPSQL 1179
             GW NQP QP NGG+G+VGWANPVKRLRTDAGKRRPS L
Sbjct: 2185 QGWVNQP-QPTNGGAGSVGWANPVKRLRTDAGKRRPSHL 2222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255541636\|ref\|XP_002511882.1\| Chromo domain protein, putative [Ricinus communis] gi\|223549062\|gb\|EEF50551.1\| Chromo domain protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|359489634\|ref\|XP_002276245.2\| PREDICTED: ATP-dependent helicase BRM-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147789690\|emb\|CAN74059.1\| hypothetical protein VITISV_024679 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356560792\|ref\|XP_003548671.1\| PREDICTED: ATP-dependent helicase BRM-like [Glycine max]	Back alignment and taxonomy information

>gi\|356520394\|ref\|XP_003528847.1\| PREDICTED: ATP-dependent helicase BRM-like [Glycine max]	Back alignment and taxonomy information

>gi\|449432144\|ref\|XP_004133860.1\| PREDICTED: ATP-dependent helicase BRM-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449480215\|ref\|XP_004155832.1\| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent helicase BRM-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356568407\|ref\|XP_003552402.1\| PREDICTED: ATP-dependent helicase BRM-like [Glycine max]	Back alignment and taxonomy information

>gi\|356531981\|ref\|XP_003534554.1\| PREDICTED: ATP-dependent helicase BRM-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1179
TAIR\|locus:2062999		2193	BRM "AT2G46020" [Arabidopsis t	0.689	0.370	0.740	0.0
UNIPROTKB\|K7GT64		980	LOC100622433 "Uncharacterized	0.330	0.397	0.425	2.2e-96
TAIR\|locus:2062840		3574	SYD "SPLAYED" [Arabidopsis tha	0.317	0.104	0.465	5.2e-93
UNIPROTKB\|F1S594		866	LOC100622433 "Uncharacterized	0.416	0.566	0.370	8.3e-86
UNIPROTKB\|P51532		1647	SMARCA4 "Transcription activat	0.330	0.236	0.425	2e-85
POMBASE\|SPAC1250.01		1199	snf21 "ATP-dependent DNA helic	0.313	0.308	0.434	1.6e-84
UNIPROTKB\|Q9HBD4		1679	SMARCA4 "SMARCA4 isoform 2" [H	0.330	0.232	0.425	2.2e-84
UNIPROTKB\|D4AA07		1262	Smarca4 "Transcription activat	0.330	0.309	0.425	2.6e-83
ASPGD\|ASPL0000042729		1407	AN2278 [Emericella nidulans (t	0.368	0.309	0.376	3.8e-83
CGD\|CAL0003962		1303	orf19.239 [Candida albicans (t	0.478	0.432	0.344	1.4e-82

TAIR\|locus:2062999 BRM "AT2G46020" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3127 (1105.8 bits), Expect = 0., Sum P(2) = 0.
 Identities = 615/830 (74%), Positives = 685/830 (82%)

Query:     4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
             W+SELH WLPSVSCIYYVG KDQRS+LFSQEV A+KFNVLVTTYEFIMYDRSKLSKVDWK
Sbjct:  1045 WKSELHTWLPSVSCIYYVGTKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKVDWK 1104

Query:    64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
             YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND            P+VFDNRK
Sbjct:  1105 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRK 1164

Query:   124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
             AFHDWF+QPFQKEGP HN +DDWLETEKKVI+IHRLHQILEPFMLRRRVEDVEGSLP KV
Sbjct:  1165 AFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLPAKV 1224

Query:   184 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 243
             S+VLRCRMSAIQSA+YDWIKATGTLRVDP+DEK R QKNPIYQAK+Y+TLNNRCMELRK 
Sbjct:  1225 SVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIYRTLNNRCMELRKA 1284

Query:   244 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL 303
             CNHPLLNYPYF+D SKDFLV+SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL
Sbjct:  1285 CNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL 1344

Query:   304 QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP 363
             QWR+LVYRRIDGTTSLEDRESAIVDFN  D+DCFIFLLSIRAAGRGLNLQ+ADTV+IYDP
Sbjct:  1345 QWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDP 1404

Query:   364 DPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD 423
             DPNPKNEEQAVARAHRIGQ REVKVIYMEAVV+K+SSHQKEDELRSGG+VDLEDD+AGKD
Sbjct:  1405 DPNPKNEEQAVARAHRIGQTREVKVIYMEAVVEKLSSHQKEDELRSGGSVDLEDDMAGKD 1464

Query:   424 RYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHD 483
             RYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHD
Sbjct:  1465 RYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHD 1524

Query:   484 VPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSK 543
             VPSL EVNRMIARSE+EVELFDQMDEEF W EEMT ++QVPKWLRAST+EVNAT+A+LSK
Sbjct:  1525 VPSLHEVNRMIARSEEEVELFDQMDEEFDWTEEMTNHEQVPKWLRASTREVNATVADLSK 1584

Query:   544 KPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQ 602
             KPSKN+L  SN+ V  G    ERKRG PK KK  NYKE++D+I  YSE SS+ERN     
Sbjct:  1585 KPSKNMLSSSNLIVQPGGPGGERKRGRPKSKKI-NYKEIEDDIAGYSEESSEERNIDSGN 1643

Query:   603 XXXXXXXXXXXXXYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAXXX 662
                           +GA+G   +NK + + + PVC  GYDY   S + + N   ++A   
Sbjct:  1644 EEEGDIRQFDDDELTGALGDHQTNKGEFDGENPVC--GYDYPPGSGSYKKNPPRDDAGSS 1701

Query:   663 XXXXXXRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQS 722
                    R  ++ SPVS QKFGSLSAL+ RPGS+SKR+ D+LEEGEIA SGDSH+D Q+S
Sbjct:  1702 GSSPESHRSKEMASPVSSQKFGSLSALDTRPGSVSKRLLDDLEEGEIAASGDSHIDLQRS 1761

Query:   723 GSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMD 782
             GSW HDRDEG++EQVLQP IKRKRSIR+RPR T ER +    ++ P  +      P Q+D
Sbjct:  1762 GSWAHDRDEGDEEQVLQPTIKRKRSIRLRPRQTAERVDG---SEMPAAQ------PLQVD 1812

Query:   783 NKYPAQLRT--DTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKS 830
               Y ++LRT  D+      +S+S    +S P+ K      S+   ++PKS
Sbjct:  1813 RSYRSKLRTVVDSHSSRQDQSDSSSRLRSVPAKKVAST--SKLHVSSPKS 1860

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0004386 "helicase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IGI

GO:0043044 "ATP-dependent chromatin remodeling" evidence=NAS;TAS

GO:0040029 "regulation of gene expression, epigenetic" evidence=RCA;IMP

GO:0005829 "cytosol" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB\|K7GT64 LOC100622433 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

TAIR\|locus:2062840 SYD "SPLAYED" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S594 LOC100622433 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|P51532 SMARCA4 "Transcription activator BRG1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

POMBASE\|SPAC1250.01 snf21 "ATP-dependent DNA helicase Snf21" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9HBD4 SMARCA4 "SMARCA4 isoform 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|D4AA07 Smarca4 "Transcription activator BRG1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000042729 AN2278 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

CGD\|CAL0003962 orf19.239 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6EVK6	BRM_ARATH	3, ., 6, ., 4, ., 1, 2	0.7177	0.9652	0.5189	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	0.824
3rd Layer	3.6.4	0.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1179
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	6e-96
pfam00176		301	pfam00176, SNF2_N, SNF2 family N-terminal domain	6e-67
COG0553		866	COG0553, HepA, Superfamily II DNA/RNA helicases, S	7e-66
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	5e-27
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	5e-21
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	5e-20
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	4e-16
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	7e-13
smart00297		107	smart00297, BROMO, bromo domain	2e-12
cd04369		99	cd04369, Bromodomain, Bromodomain	1e-05
pfam00270		169	pfam00270, DEAD, DEAD/DEAH box helicase	7e-05
COG1061		442	COG1061, SSL2, DNA or RNA helicases of superfamily	0.002
pfam11496		279	pfam11496, HDA2-3, Class II histone deacetylase co	0.003
cd05502		109	cd05502, Bromo_tif1_like, Bromodomain; tif1_like s	0.003

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

 Score =  329 bits (846), Expect = 6e-96
 Identities = 160/393 (40%), Positives = 234/393 (59%), Gaps = 42/393 (10%)

Query: 4   WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
           W +E+ ++ P +  + + G  ++R+    + + A KF+V VT++E  + +++ L +  W+
Sbjct: 234 WMNEIRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWR 293

Query: 64  YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRK 123
           YIIIDEA R+K+  S+L++ +  +    RLL+TGTPLQN+L ELW+LLN LLPE+F + +
Sbjct: 294 YIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAE 353

Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
            F +WF    Q  G     +           ++ +LH++L PF+LRR   DVE  LPPK 
Sbjct: 354 TFDEWF----QISGENDQQE-----------VVQQLHKVLRPFLLRRLKSDVEKGLPPKK 398

Query: 184 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKN--PIYQAKVYKTLNNRCMELR 241
             +L+  MS +Q   Y                K  +QK+   +      K L N  M+LR
Sbjct: 399 ETILKVGMSQMQKQYY----------------KALLQKDLDVVNAGGERKRLLNIAMQLR 442

Query: 242 KTCNHPLL------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKL 295
           K CNHP L        PY +    + LV++ GK+ +LD++L KL+    RVL+FS MT+L
Sbjct: 443 KCCNHPYLFQGAEPGPPYTTG---EHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRL 499

Query: 296 LDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA 355
           LDILE+YL +R   Y RIDG T  EDR+++I  FN   S+ F+FLLS RA G G+NL +A
Sbjct: 500 LDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATA 559

Query: 356 DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
           D VI+YD D NP+ + QA  RAHRIGQK+EV+V
Sbjct: 560 DIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQV 592

Length = 1033

>gnl\|CDD\|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain	Back alignment and domain information

>gnl\|CDD\|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|197636 smart00297, BROMO, bromo domain	Back alignment and domain information

>gnl\|CDD\|99922 cd04369, Bromodomain, Bromodomain	Back alignment and domain information

>gnl\|CDD\|215832 pfam00270, DEAD, DEAD/DEAH box helicase	Back alignment and domain information

>gnl\|CDD\|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|221124 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 2 and 3	Back alignment and domain information

>gnl\|CDD\|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1179
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	100.0
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	100.0
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	100.0
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	100.0
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	100.0
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	100.0
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	100.0
KOG0387		923	consensus Transcription-coupled repair protein CSB	100.0
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	100.0
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	100.0
KOG1015		1567	consensus Transcription regulator XNP/ATRX, DEAD-b	100.0
KOG1002		791	consensus Nucleotide excision repair protein RAD16	100.0
KOG4439		901	consensus RNA polymerase II transcription terminat	100.0
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	100.0
KOG1016		1387	consensus Predicted DNA helicase, DEAD-box superfa	100.0
PRK04914		956	ATP-dependent helicase HepA; Validated	100.0
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	100.0
KOG1001		674	consensus Helicase-like transcription factor HLTF/	100.0
KOG0383		696	consensus Predicted helicase [General function pre	100.0
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	99.95
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	99.95
PRK13766		773	Hef nuclease; Provisional	99.93
KOG0298		1394	consensus DEAD box-containing helicase-like transc	99.92
cd05524		113	Bromo_polybromo_I Bromodomain, polybromo repeat I.	99.9
cd05525		106	Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1	99.89
cd05515		105	Bromo_polybromo_V Bromodomain, polybromo repeat V.	99.89
cd05517		103	Bromo_polybromo_II Bromodomain, polybromo repeat I	99.89
cd05516		107	Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s	99.88
cd05518		103	Bromo_polybromo_IV Bromodomain, polybromo repeat I	99.88
cd05521		106	Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik	99.86
cd05519		103	Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci	99.86
cd05520		103	Bromo_polybromo_III Bromodomain, polybromo repeat	99.84
PHA02558		501	uvsW UvsW helicase; Provisional	99.84
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.83
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.83
cd05522		104	Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l	99.82
cd05502		109	Bromo_tif1_like Bromodomain; tif1_like subfamily.	99.79
smart00297		107	BROMO bromo domain.	99.77
cd05526		110	Bromo_polybromo_VI Bromodomain, polybromo repeat V	99.77
PTZ00110		545	helicase; Provisional	99.75
cd05505		97	Bromo_WSTF_like Bromodomain; Williams syndrome tra	99.75
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	99.74
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	99.73
cd05504		115	Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li	99.72
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	99.71
cd05499		102	Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam	99.71
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	99.71
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	99.71
cd05510		112	Bromo_SPT7_like Bromodomain; SPT7_like subfamily.	99.71
cd05496		119	Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub	99.71
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	99.71
cd05498		102	Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil	99.71
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	99.69
cd05509		101	Bromo_gcn5_like Bromodomain; Gcn5_like subfamily.	99.69
cd05503		97	Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s	99.69
cd05495		108	Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb	99.68
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	99.68
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	99.68
cd05497		107	Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily	99.68
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.68
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	99.68
cd05529		128	Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like	99.68
cd05507		104	Bromo_brd8_like Bromodomain, brd8_like subgroup. I	99.68
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	99.67
KOG0354		746	consensus DEAD-box like helicase [General function	99.67
cd05500		103	Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami	99.67
KOG1123		776	consensus RNA polymerase II transcription initiati	99.65
cd05501		102	Bromo_SP100C_like Bromodomain, SP100C_like subfami	99.64
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.64
cd04369		99	Bromodomain Bromodomain. Bromodomains are found in	99.63
cd05511		112	Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum	99.63
cd05508		99	Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC	99.63
cd05528		112	Bromo_AAA Bromodomain; sub-family co-occurring wit	99.63
cd05506		99	Bromo_plant1 Bromodomain, uncharacterized subfamil	99.63
cd05512		98	Bromo_brd1_like Bromodomain; brd1_like subfamily.	99.62
PTZ00424		401	helicase 45; Provisional	99.62
cd05513		98	Bromo_brd7_like Bromodomain, brd7_like subgroup. T	99.61
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.61
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.58
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	99.58
PF00439		84	Bromodomain: Bromodomain; InterPro: IPR001487 Brom	99.57
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.56
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	99.56
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	99.55
PRK10689		1147	transcription-repair coupling factor; Provisional	99.55
COG5076		371	Transcription factor involved in chromatin remodel	99.53
PRK13767		876	ATP-dependent helicase; Provisional	99.52
cd05492		109	Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family	99.48
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.48
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	99.47
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.46
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	99.44
KOG1474		640	consensus Transcription initiation factor TFIID, s	99.44
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.38
KOG0343		758	consensus RNA Helicase [RNA processing and modific	99.38
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.38
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.37
PRK02362		737	ski2-like helicase; Provisional	99.36
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.35
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	99.34
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.34
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.34
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	99.32
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	99.3
PRK01172		674	ski2-like helicase; Provisional	99.29
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.29
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.28
KOG4284		980	consensus DEAD box protein [Transcription]	99.28
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	99.28
PRK00254		720	ski2-like helicase; Provisional	99.26
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.22
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.22
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	99.2
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	99.18
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	99.17
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	99.17
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.16
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	99.15
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.12
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	99.11
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.11
KOG1827		629	consensus Chromatin remodeling complex RSC, subuni	99.11
PRK09401		1176	reverse gyrase; Reviewed	99.07
PHA02653		675	RNA helicase NPH-II; Provisional	99.02
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.01
KOG1245		1404	consensus Chromatin remodeling complex WSTF-ISWI,	98.97
COG4096		875	HsdR Type I site-specific restriction-modification	98.97
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	98.96
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	98.95
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	98.95
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	98.95
PRK09694		878	helicase Cas3; Provisional	98.89
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	98.88
KOG0347		731	consensus RNA helicase [RNA processing and modific	98.87
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	98.85
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	98.85
PRK12904		830	preprotein translocase subunit SecA; Reviewed	98.85
PRK13107		908	preprotein translocase subunit SecA; Reviewed	98.81
COG1205		851	Distinct helicase family with a unique C-terminal	98.81
PRK05580		679	primosome assembly protein PriA; Validated	98.81
KOG0334		997	consensus RNA helicase [RNA processing and modific	98.8
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	98.8
COG1204		766	Superfamily II helicase [General function predicti	98.8
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	98.78
PRK05298		652	excinuclease ABC subunit B; Provisional	98.77
PF11496		297	HDA2-3: Class II histone deacetylase complex subun	98.76
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	98.75
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	98.74
COG1202		830	Superfamily II helicase, archaea-specific [General	98.71
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	98.71
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	98.69
PRK14701		1638	reverse gyrase; Provisional	98.67
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	98.63
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	98.63
KOG0327		397	consensus Translation initiation factor 4F, helica	98.62
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	98.54
KOG0346		569	consensus RNA helicase [RNA processing and modific	98.49
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	98.47
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	98.47
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	98.45
COG4889		1518	Predicted helicase [General function prediction on	98.43
KOG1472		720	consensus Histone acetyltransferase SAGA/ADA, cata	98.42
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	98.3
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	98.2
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	98.2
PRK12326		764	preprotein translocase subunit SecA; Reviewed	98.19
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	98.05
KOG1513		1300	consensus Nuclear helicase MOP-3/SNO (DEAD-box sup	97.99
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	97.99
cd05491		119	Bromo_TBP7_like Bromodomain; TBP7_like subfamily,	97.99
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	97.98
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	97.97
smart00487		201	DEXDc DEAD-like helicases superfamily.	97.96
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	97.93
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	97.92
KOG0353		695	consensus ATP-dependent DNA helicase [General func	97.91
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	97.85
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	97.8
KOG0955		1051	consensus PHD finger protein BR140/LIN-49 [General	97.61
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	97.6
PF13871		278	Helicase_C_4: Helicase_C-like	97.59
KOG0329		387	consensus ATP-dependent RNA helicase [RNA processi	97.5
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	97.26
COG0610		962	Type I site-specific restriction-modification syst	97.16
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	97.12
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	97.07
CHL00122		870	secA preprotein translocase subunit SecA; Validate	96.96
cd05494		114	Bromodomain_1 Bromodomain; uncharacterized subfami	96.93
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	96.85
cd05516		107	Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s	96.8
KOG0008		1563	consensus Transcription initiation factor TFIID, s	96.79
cd05525		106	Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1	96.78
cd05520		103	Bromo_polybromo_III Bromodomain, polybromo repeat	96.69
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	96.66
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	96.64
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	96.64
cd05517		103	Bromo_polybromo_II Bromodomain, polybromo repeat I	96.62
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	96.59
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	96.5
cd05515		105	Bromo_polybromo_V Bromodomain, polybromo repeat V.	96.35
cd05524		113	Bromo_polybromo_I Bromodomain, polybromo repeat I.	96.34
cd05519		103	Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci	96.34
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	96.27
cd05522		104	Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l	96.27
KOG0950		1008	consensus DNA polymerase theta/eta, DEAD-box super	96.12
cd05518		103	Bromo_polybromo_IV Bromodomain, polybromo repeat I	96.07
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	96.0
KOG1472		720	consensus Histone acetyltransferase SAGA/ADA, cata	95.82
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	95.77
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	95.63
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	95.48
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	95.43
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	95.42
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	95.33
KOG0922		674	consensus DEAH-box RNA helicase [RNA processing an	95.13
KOG0920		924	consensus ATP-dependent RNA helicase A [RNA proces	95.12
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	95.08
COG5076		371	Transcription factor involved in chromatin remodel	95.04
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	94.95
cd05521		106	Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik	94.9
KOG0008		1563	consensus Transcription initiation factor TFIID, s	94.86
KOG1828		418	consensus IRF-2-binding protein CELTIX-1, contains	94.48
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	93.94
cd05505		97	Bromo_WSTF_like Bromodomain; Williams syndrome tra	93.86
cd05508		99	Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC	93.78
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	93.63
cd05507		104	Bromo_brd8_like Bromodomain, brd8_like subgroup. I	93.62
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	93.38
cd05493		131	Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-	93.37
cd05512		98	Bromo_brd1_like Bromodomain; brd1_like subfamily.	93.37
cd05497		107	Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily	93.28
cd05526		110	Bromo_polybromo_VI Bromodomain, polybromo repeat V	92.96
cd05496		119	Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub	92.65
cd05510		112	Bromo_SPT7_like Bromodomain; SPT7_like subfamily.	92.42
cd05511		112	Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum	92.28
cd05503		97	Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s	91.94
cd05498		102	Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil	91.94
smart00492		141	HELICc3 helicase superfamily c-terminal domain.	91.83
cd05495		108	Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb	91.68
cd05499		102	Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam	91.62
cd05528		112	Bromo_AAA Bromodomain; sub-family co-occurring wit	91.56
smart00491		142	HELICc2 helicase superfamily c-terminal domain.	91.49
smart00297		107	BROMO bromo domain.	91.48
KOG1828		418	consensus IRF-2-binding protein CELTIX-1, contains	91.43
cd05513		98	Bromo_brd7_like Bromodomain, brd7_like subgroup. T	91.39
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	91.29
cd05509		101	Bromo_gcn5_like Bromodomain; Gcn5_like subfamily.	91.24
COG1198		730	PriA Primosomal protein N' (replication factor Y)	91.22
cd05504		115	Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li	90.95
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	90.7
KOG0924		1042	consensus mRNA splicing factor ATP-dependent RNA h	90.68
PF06733		174	DEAD_2: DEAD_2; InterPro: IPR010614 This represent	90.66
KOG1474		640	consensus Transcription initiation factor TFIID, s	90.63
cd05529		128	Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like	90.36
PF00439		84	Bromodomain: Bromodomain; InterPro: IPR001487 Brom	89.82
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	87.92
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	87.92
cd05502		109	Bromo_tif1_like Bromodomain; tif1_like subfamily.	87.29
cd05492		109	Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family	87.15
cd05506		99	Bromo_plant1 Bromodomain, uncharacterized subfamil	86.5
cd04369		99	Bromodomain Bromodomain. Bromodomains are found in	85.27
PF14619		74	SnAC: Snf2-ATP coupling, chromatin remodelling com	85.02
TIGR00595		505	priA primosomal protein N'. All proteins in this f	84.68
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	84.64
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	84.35
cd05494		114	Bromodomain_1 Bromodomain; uncharacterized subfami	83.89
cd05500		103	Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami	83.26
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	82.43
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	82.19
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	81.5
cd05501		102	Bromo_SP100C_like Bromodomain, SP100C_like subfami	81.43
PRK05580		679	primosome assembly protein PriA; Validated	81.09

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

Probab=100.00  E-value=2.6e-108  Score=980.78  Aligned_cols=663  Identities=42%  Similarity=0.632  Sum_probs=572.8

Q ss_pred             ChhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhHH
Q 001037            1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL   80 (1179)
Q Consensus         1 LsQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk~   80 (1179)
                      |+||..||.+|+|++..++|+|.+..|..+..+. ..++|+|++|||+++++++..|.++.|.++||||+|+|||..|++
T Consensus       456 L~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qi-r~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KL  534 (1157)
T KOG0386|consen  456 LVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQ-RHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKL  534 (1157)
T ss_pred             cCCchhhccccccceeeeeeeCCHHHHhhHHHHH-hcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHH
Confidence            6899999999999999999999999999988764 459999999999999999999999999999999999999999999


Q ss_pred             HHHHH-hhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHHHHHHH
Q 001037           81 ARDLD-RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL  159 (1179)
Q Consensus        81 tkaL~-~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ii~rL  159 (1179)
                      +..|. .+.+++||||||||+||++.|||+|||||.|.+|+++..|.+||+.||+..|     +..++..++.+++|+||
T Consensus       535 t~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantG-----ek~eLteEEtlLIIrRL  609 (1157)
T KOG0386|consen  535 TDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTG-----EKVELTEEETLLIIRRL  609 (1157)
T ss_pred             HHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcC-----CcccccchHHHHHHHHH
Confidence            99999 6799999999999999999999999999999999999999999999999987     34567889999999999


Q ss_pred             HHhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHHHHHHH
Q 001037          160 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME  239 (1179)
Q Consensus       160 ~kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~~l~~  239 (1179)
                      |++|+||++||.|++|+.+||++++.++.|.||+.|+.+|..+.....+.++.           ......++.|+|.+|+
T Consensus       610 HkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~-----------~~g~~g~k~L~N~imq  678 (1157)
T KOG0386|consen  610 HKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDT-----------AKGKKGYKPLFNTIMQ  678 (1157)
T ss_pred             HHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCc-----------hhccccchhhhhHhHH
Confidence            99999999999999999999999999999999999999999999887776554           1122357889999999


Q ss_pred             HHHHcCCCCCCC----CcccccchhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcC
Q 001037          240 LRKTCNHPLLNY----PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG  315 (1179)
Q Consensus       240 LRkicnhP~L~~----~~l~~l~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdG  315 (1179)
                      ||++||||+++.    ..........+++.|||+++|+++|.+|.++||+||+|||||.++++|++||..+++.|+++||
T Consensus       679 LRKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG  758 (1157)
T KOG0386|consen  679 LRKLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDG  758 (1157)
T ss_pred             HHHhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecC
Confidence            999999999983    2222333368999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeeh
Q 001037          316 TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVV  395 (1179)
Q Consensus       316 sts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVE  395 (1179)
                      .|+.++|..++..||.++++|++||+||+|||.|||||+||+||+||++|||+++.||.+|+|||||+++|+|+++++  
T Consensus       759 ~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t--  836 (1157)
T KOG0386|consen  759 QTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT--  836 (1157)
T ss_pred             CcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999988  


Q ss_pred             hhhhhhhhhhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhhh
Q 001037          396 DKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEE  475 (1179)
Q Consensus       396 E~I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~Vi~ag~Fd~~~~~eEr~~~Le~ll~~e~  475 (1179)
                                                    .+++||.|+.+ +.+|++++.+||++|.|++++++++|++.|+.+++.+.
T Consensus       837 ------------------------------v~sveE~il~~-a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~  885 (1157)
T KOG0386|consen  837 ------------------------------VNSVEEKILAE-AFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEG  885 (1157)
T ss_pred             ------------------------------hhHHHHHHHHH-HHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCC
Confidence                                          38999999985 68999999999999999999999999999999999887


Q ss_pred             cccccccCCCCHHHHHHHHhcChhHHHHHHHhhhhcCcc-------hhhcccccchHHHhhchHHHHHHHHhhccCCccc
Q 001037          476 RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWI-------EEMTRYDQVPKWLRASTKEVNATIANLSKKPSKN  548 (1179)
Q Consensus       476 ~~~e~~~~v~~~~eln~liaRseeE~~lf~~~D~e~~~~-------~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  548 (1179)
                      .+.+  ++|+++++||+||||+++|+++|.+||.++.|.       ++|+.++++|.|+.....+++..-+         
T Consensus       886 ~~~~--~~v~~~~~ln~~larseeE~~~f~~md~~r~~~e~~~~~k~rl~ee~e~p~~i~~~~~~~~~~~~---------  954 (1157)
T KOG0386|consen  886 DEEE--EEVPDDEVLNSMLARSEEEFELFHKMDEERRATENQQEKKPRLVEEAELPADIYKRDQGVERLSE---------  954 (1157)
T ss_pred             cccc--ccCCcHHHHHHHHhcchHHHHHHHHhhHHHHhhhhhccccchhhhhhhcHHHHHhcchhhhhhhh---------
Confidence            5544  789999999999999999999999999998763       3789999999999987776553211         


Q ss_pred             ccccCCcccCchhhhHhhhcCCCCCCCCCccccCccccccccccccccCCCCcccccccCCCcccccCCCCCCCCCCCCC
Q 001037          549 ILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQEEEGEIGEFEDDEYSGAVGAPLSNKD  628 (1179)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  628 (1179)
                                +++.+....||.+.+|+..|. +...+.-|..+.++.....+.            +++            
T Consensus       955 ----------~~~~~~~~~rg~r~Rkev~y~-d~~te~q~~k~~e~~~~~~~~------------~~~------------  999 (1157)
T KOG0386|consen  955 ----------EEEEEKILGRGRRARKEVVYS-DRLTEMQWLKENESVNKEDSE------------EEE------------  999 (1157)
T ss_pred             ----------hhhhhccccccccccceeecc-cccchhhhhhhccccccccch------------hhh------------
Confidence                      111122235778888888888 222233343333332111000            000            


Q ss_pred             CcccCCCcccCCccccCccccccccchhhhccCCCCCCCccccccccCCCCccccCchhhhhcCCCCccccccccccccc
Q 001037          629 QSEEDGPVCEGGYDYLRPSENTRNNHVVEEAGSSGSSSNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGE  708 (1179)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  708 (1179)
                                     +             ..|                .+.       .+++.+|.+.+|+         
T Consensus      1000 ---------------~-------------~~~----------------~~~-------~~~~~~~~~~~~~--------- 1019 (1157)
T KOG0386|consen 1000 ---------------R-------------RRG----------------RKK-------SSLDTRPLSQKKR--------- 1019 (1157)
T ss_pred             ---------------h-------------ccC----------------CCc-------cccccccchhhcc---------
Confidence                           0             000                000       0223333333331         


Q ss_pred             ccccCCCccccccCCCccccCCcCccccccchhhhcccccccccCCCcCCcccccCCCCCcccCCCCccccccCCCCcch
Q 001037          709 IAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQ  788 (1179)
Q Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1179)
                                                                                                      
T Consensus      1020 -------------------------------------------------------------------------------- 1019 (1157)
T KOG0386|consen 1020 -------------------------------------------------------------------------------- 1019 (1157)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhccCCCCccccCCCCcccccCCCCCCcccCCCcCccccccCCCCCCCCCCccchhccccccCCCcccCCCCCC
Q 001037          789 LRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSS  868 (1179)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  868 (1179)
                                                              ++     .+|.                             
T Consensus      1020 ----------------------------------------~~-----~~~~----------------------------- 1025 (1157)
T KOG0386|consen 1020 ----------------------------------------KL-----RPRS----------------------------- 1025 (1157)
T ss_pred             ----------------------------------------cc-----cCCC-----------------------------
Confidence                                                    00     0000                             


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHH
Q 001037          869 NFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSD  948 (1179)
Q Consensus       869 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d  948 (1179)
                             +   +.|+.|+++.-.++|++||.+.+.|+.+|+|+++||||.+ |..|+++.+|-++|....|.+..++..|
T Consensus      1026 -------~---~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~-i~~~~~~~~~~~~i~~~~~~~~~~~~~~ 1094 (1157)
T KOG0386|consen 1026 -------P---KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEI-IKKPVAIDKIKKRIENHKYNSLKELEKD 1094 (1157)
T ss_pred             -------h---HHHHHHHHHHHhcccccccccchhcccCcccccccchHHH-hcchhhHHHHhhhccccccchHHHHHHH
Confidence                   0   8999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhh
Q 001037          949 VQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA  984 (1179)
Q Consensus       949 ~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~  984 (1179)
                      |.+||.||..||+.+|.+|.||..|..+|.......
T Consensus      1095 ~~~~~~na~~~~~egs~~y~d~~~l~~~~~~~~~~~ 1130 (1157)
T KOG0386|consen 1095 FMLLFNNARTYNEEGSRVYEDAIVLQSVFKSARQEI 1130 (1157)
T ss_pred             HHhhcchhhhhccCCceechhHHHHHHHHhhhHHHH
Confidence            999999999999999999999999999998766554

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0383 consensus Predicted helicase [General function prediction only]	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]	Back alignment and domain information

>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I	Back alignment and domain information

>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family	Back alignment and domain information

>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V	Back alignment and domain information

>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II	Back alignment and domain information

>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals	Back alignment and domain information

>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV	Back alignment and domain information

>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi	Back alignment and domain information

>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi	Back alignment and domain information

>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi	Back alignment and domain information

>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily	Back alignment and domain information

>smart00297 BROMO bromo domain	Back alignment and domain information

>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like)	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>cd05499 Bromo_BDF1_2_II Bromodomain	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily	Back alignment and domain information

>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily	Back alignment and domain information

>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily	Back alignment and domain information

>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily	Back alignment and domain information

>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>cd05500 Bromo_BDF1_2_I Bromodomain	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>cd04369 Bromodomain Bromodomain	Back alignment and domain information

>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily	Back alignment and domain information

>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily	Back alignment and domain information

>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains	Back alignment and domain information

>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants	Back alignment and domain information

>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PF13871 Helicase_C_4: Helicase_C-like	Back alignment and domain information

>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals	Back alignment and domain information

>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]	Back alignment and domain information

>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family	Back alignment and domain information

>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V	Back alignment and domain information

>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I	Back alignment and domain information

>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi	Back alignment and domain information

>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi	Back alignment and domain information

>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]	Back alignment and domain information

>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like)	Back alignment and domain information

>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins	Back alignment and domain information

>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily	Back alignment and domain information

>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I	Back alignment and domain information

>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI	Back alignment and domain information

>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily	Back alignment and domain information

>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily	Back alignment and domain information

>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily	Back alignment and domain information

>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily	Back alignment and domain information

>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II	Back alignment and domain information

>smart00492 HELICc3 helicase superfamily c-terminal domain	Back alignment and domain information

>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily	Back alignment and domain information

>cd05499 Bromo_BDF1_2_II Bromodomain	Back alignment and domain information

>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains	Back alignment and domain information

>smart00491 HELICc2 helicase superfamily c-terminal domain	Back alignment and domain information

>smart00297 BROMO bromo domain	Back alignment and domain information

>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]	Back alignment and domain information

>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin	Back alignment and domain information

>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]	Back alignment and domain information

>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily	Back alignment and domain information

>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily	Back alignment and domain information

>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family	Back alignment and domain information

>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants	Back alignment and domain information

>cd04369 Bromodomain Bromodomain	Back alignment and domain information

>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily	Back alignment and domain information

>cd05500 Bromo_BDF1_2_I Bromodomain	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1179
3mwy_W		800	Crystal Structure Of The Chromodomain-atpase Portio		8e-66
1z3i_X		644	Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA		4e-36
1z6a_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN		4e-26
1z63_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM		4e-25
1z5z_A		271	Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal		3e-08

>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800